AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1273620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1273620 MtrunA17_Chr8g0339281 99.362 470 3 0 1 470 1 470 0.0 954
Msa1273620 MtrunA17_Chr4g0059081 74.522 471 116 3 1 469 1 469 0.0 726
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1273620 AT5G62790.1 73.830 470 114 4 1 465 2 467 0.0 696
Msa1273620 AT5G62790.2 70.468 491 115 5 1 465 1 487 0.0 684

Find 108 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAACAATAGACTCTTTC+TGG 0.113929 8_3:-7374679 None:intergenic
CTGGTTCTGGAGGTGCTTTC+AGG 0.116417 8_3:+7374028 Msa1273620:CDS
ACGATACATCACTTTGATTT+TGG 0.128678 8_3:+7375634 Msa1273620:three_prime_UTR
TGCTCCCCAGGGATGATTTC+AGG 0.155639 8_3:-7373075 None:intergenic
GCAATATATATGTGTTAAAA+AGG 0.179844 8_3:+7375424 Msa1273620:three_prime_UTR
CCCACAACTCTAAATCTTTC+TGG 0.190443 8_3:-7372400 None:intergenic
CACCTCCAGAACCAGTTAAT+TGG 0.231332 8_3:-7374020 None:intergenic
ATGCATTAAAGCATCCTATT+TGG 0.236011 8_3:+7374209 Msa1273620:CDS
TTTCTTCCTAAACTCCAAAT+AGG 0.264648 8_3:-7374223 None:intergenic
AAAATCCAATTAACTGGTTC+TGG 0.278312 8_3:+7374015 Msa1273620:CDS
AAGCATCCTATTTGGAGTTT+AGG 0.286041 8_3:+7374217 Msa1273620:CDS
GTAACTACTGTGGCCGCATC+AGG 0.322322 8_3:-7373231 None:intergenic
CCAAAACCCATTTCTGTCTT+AGG 0.325179 8_3:+7371516 Msa1273620:CDS
TGTTACTCTTCTTGCTGAAC+AGG 0.340001 8_3:+7372441 Msa1273620:CDS
ATTGAAGCACACTACTTGTT+TGG 0.341913 8_3:+7374413 Msa1273620:CDS
CCTAAGACAGAAATGGGTTT+TGG 0.343835 8_3:-7371516 None:intergenic
TGCTATGCTGCCGGACGTGC+TGG 0.364387 8_3:+7374996 Msa1273620:CDS
TGATGAACTCAAAGAGGCTT+TGG 0.369480 8_3:+7373035 Msa1273620:CDS
AATTCATATAAGTTCTTCTC+TGG 0.371576 8_3:-7375547 None:intergenic
ATTTCTGTCTTAGGCTCAAC+TGG 0.373291 8_3:+7371525 Msa1273620:CDS
TTAGGCTCAACTGGTTCAAT+TGG 0.387627 8_3:+7371534 Msa1273620:CDS
AGAGTTGTGGGGCTTGCAGC+TGG 0.407476 8_3:+7372412 Msa1273620:CDS
TCTTCTGTTATTGCACAGTT+GGG 0.407522 8_3:+7374613 Msa1273620:CDS
GATGAAAGACATTAAGCTTA+AGG 0.407814 8_3:+7374186 Msa1273620:CDS
GGCTGAGGAATAGCTGTTCC+TGG 0.408782 8_3:-7371468 None:intergenic
ACAAAGTTACCTTATTGAAA+AGG 0.409791 8_3:-7374267 None:intergenic
CCAGAAAGATTTAGAGTTGT+GGG 0.417586 8_3:+7372400 Msa1273620:CDS
TTCTTCTGTTATTGCACAGT+TGG 0.418400 8_3:+7374612 Msa1273620:CDS
CTGGCCATGACAAAGTATAA+AGG 0.421069 8_3:-7374660 None:intergenic
TTTGTTTGTATAAAATGTAA+AGG 0.425025 8_3:+7375398 Msa1273620:three_prime_UTR
AATGAGGGCTTCACTTGAGC+TGG 0.425141 8_3:-7369516 None:intergenic
AGTTGGTTGTGCAGGATTGA+AGG 0.426456 8_3:+7373260 Msa1273620:CDS
GATGCGGCCACAGTAGTTAC+AGG 0.427903 8_3:+7373234 Msa1273620:CDS
TTTGGCTAATTCGTTGATCA+TGG 0.442514 8_3:+7369476 Msa1273620:exon
TCTATTGTTCTGAAATTACT+TGG 0.443822 8_3:+7374689 Msa1273620:CDS
AAATTCTTCACTATGATCAA+TGG 0.443929 8_3:+7375265 Msa1273620:CDS
TTTGCAGACACTTAATATAG+TGG 0.444020 8_3:+7372369 Msa1273620:intron
AGTTGAGCCTAAGACAGAAA+TGG 0.444065 8_3:-7371523 None:intergenic
ACAGTTGCGGCGATTGAAGC+AGG 0.447063 8_3:+7373753 Msa1273620:CDS
CAAAGTTACCTTATTGAAAA+GGG 0.449932 8_3:-7374266 None:intergenic
CATGGTGCCTCCAGCACGTC+CGG 0.450053 8_3:-7375006 None:intergenic
AGGAGTGGCAACCGCATGTC+AGG 0.450100 8_3:-7374640 None:intergenic
AACAAAGAGACAATGATTGC+TGG 0.450546 8_3:+7373795 Msa1273620:CDS
ATGTCTTTCATCTTCTCAGC+AGG 0.451171 8_3:-7374175 None:intergenic
ACAGGAATAGTTGGTTGTGC+AGG 0.452774 8_3:+7373252 Msa1273620:CDS
TTGTTTGTATAAAATGTAAA+GGG 0.455410 8_3:+7375399 Msa1273620:three_prime_UTR
GATGGAAACTTCTTAGTGTC+TGG 0.458287 8_3:-7374963 None:intergenic
GCTTCAATCGCCGCAACTGT+TGG 0.459796 8_3:-7373750 None:intergenic
AATTCTTCACTATGATCAAT+GGG 0.464591 8_3:+7375266 Msa1273620:CDS
GTTGAGCCTAAGACAGAAAT+GGG 0.465989 8_3:-7371522 None:intergenic
ACAGTAGTTACAGGAATAGT+TGG 0.466428 8_3:+7373243 Msa1273620:CDS
GGGCTTCACTTGAGCTGGGG+AGG 0.469449 8_3:-7369511 None:intergenic
CACAAACCTGAAATCATCCC+TGG 0.472085 8_3:+7373069 Msa1273620:CDS
AACTGGTTCAATTGGAACTC+AGG 0.475794 8_3:+7371542 Msa1273620:CDS
TCAATGACTCCTTGCTCCCC+AGG 0.481009 8_3:-7373087 None:intergenic
GTTCCTGGCCAAGCTGGTGG+TGG 0.483247 8_3:-7371453 None:intergenic
GGCTTCACTTGAGCTGGGGA+GGG 0.484400 8_3:-7369510 None:intergenic
CGAGTGGAAGAACTACATAT+TGG 0.486387 8_3:-7375506 None:intergenic
GTGCACCCTTTGGCAAACCT+TGG 0.492039 8_3:-7373987 None:intergenic
TTCTCTTCACAGTGTATCCA+AGG 0.495462 8_3:+7373970 Msa1273620:intron
GATTGTACTTGGTAAGATCA+AGG 0.497374 8_3:-7374717 None:intergenic
CACTCCTTTATACTTTGTCA+TGG 0.504667 8_3:+7374656 Msa1273620:CDS
TCACCACCACCAGCTTGGCC+AGG 0.507652 8_3:+7371450 Msa1273620:CDS
ATGAGGGCTTCACTTGAGCT+GGG 0.509509 8_3:-7369515 None:intergenic
CGTGCTGGAGGCACCATGAC+CGG 0.512996 8_3:+7375011 Msa1273620:CDS
CACACTCACCACCACCAGCT+TGG 0.516652 8_3:+7371445 Msa1273620:CDS
TCCAGAAAGATTTAGAGTTG+TGG 0.529260 8_3:+7372399 Msa1273620:CDS
TGAAGAATTTCTTCAAGTGT+AGG 0.529338 8_3:-7375252 None:intergenic
CTTTGCATTGAAGAGAAAAG+AGG 0.531645 8_3:+7371380 Msa1273620:CDS
GAAATCATCCCTGGGGAGCA+AGG 0.537606 8_3:+7373078 Msa1273620:CDS
GTGAATCTTTGCTATGCTGC+CGG 0.539876 8_3:+7374987 Msa1273620:CDS
ATGTTATTCTTGTGAGCAAG+AGG 0.541192 8_3:-7373834 None:intergenic
GAACTCAAAGAGGCTTTGGC+TGG 0.544181 8_3:+7373039 Msa1273620:CDS
TGTATCCAAGGTTTGCCAAA+GGG 0.545399 8_3:+7373982 Msa1273620:CDS
CGTAATTCAGTGAAATTCAT+CGG 0.546454 8_3:-7375614 None:intergenic
GCAGAATGTTCTGAATCAGC+AGG 0.549134 8_3:-7373867 None:intergenic
GTAGCTGTGTGGTCAATTGT+TGG 0.553090 8_3:+7375340 Msa1273620:three_prime_UTR
TAAAATTGATGAACTCAAAG+AGG 0.559890 8_3:+7373029 Msa1273620:CDS
ATAGCTGTTCCTGGCCAAGC+TGG 0.560525 8_3:-7371459 None:intergenic
TGGGCAAGACAATATGCTGC+TGG 0.564280 8_3:+7375285 Msa1273620:CDS
TGTTGTCAGTGTTCATTGAG+TGG 0.567366 8_3:+7369413 None:intergenic
CAATGACTCCTTGCTCCCCA+GGG 0.582111 8_3:-7373086 None:intergenic
ACAAACCTGAAATCATCCCT+GGG 0.582550 8_3:+7373070 Msa1273620:CDS
TTTGCATTGAAGAGAAAAGA+GGG 0.583030 8_3:+7371381 Msa1273620:CDS
TATGCTGCCGGACGTGCTGG+AGG 0.583393 8_3:+7374999 Msa1273620:CDS
ATCCAATTAACTGGTTCTGG+AGG 0.587262 8_3:+7374018 Msa1273620:CDS
TCTCTAAGAGCTACTAACTC+AGG 0.587556 8_3:-7373000 None:intergenic
AATGAATGTATGATAGATTG+TGG 0.591032 8_3:-7374470 None:intergenic
GCATAGCAAAGATTCACTGA+TGG 0.591366 8_3:-7374981 None:intergenic
AGCACTAAGAACTCCGGTCA+TGG 0.591579 8_3:-7375024 None:intergenic
GCTGTTCCTGGCCAAGCTGG+TGG 0.597035 8_3:-7371456 None:intergenic
CAGAAAGATTTAGAGTTGTG+GGG 0.597402 8_3:+7372401 Msa1273620:CDS
ACATTCATTAGTTGAAACAC+AGG 0.602985 8_3:+7374484 Msa1273620:CDS
TAACTACTGTGGCCGCATCA+GGG 0.604825 8_3:-7373230 None:intergenic
GTGTATCCAAGGTTTGCCAA+AGG 0.606096 8_3:+7373981 Msa1273620:intron
GGTTGCTCGTCACCCTGATG+CGG 0.616790 8_3:+7373218 Msa1273620:intron
CAGTTGCGGCGATTGAAGCA+GGG 0.637242 8_3:+7373754 Msa1273620:CDS
CATGACAAAGTATAAAGGAG+TGG 0.651485 8_3:-7374655 None:intergenic
GTTTGCAGCACTAAGAACTC+CGG 0.652712 8_3:-7375030 None:intergenic
AACTATTCCTGTAACTACTG+TGG 0.654183 8_3:-7373241 None:intergenic
TGAGGGCTTCACTTGAGCTG+GGG 0.662479 8_3:-7369514 None:intergenic
AAATTTATAACATCTTCGAG+TGG 0.674904 8_3:-7375522 None:intergenic
AAAGAGACAATGATTGCTGG+AGG 0.680798 8_3:+7373798 Msa1273620:CDS
TGGGGAGCAAGGAGTCATTG+AGG 0.682191 8_3:+7373089 Msa1273620:CDS
AGTTGGGATTACCTGACATG+CGG 0.683657 8_3:+7374629 Msa1273620:CDS
TTGAATCTCATGTAGCTGTG+TGG 0.713858 8_3:+7375329 Msa1273620:exon
TACTTGGTAAGATCAAGGCG+AGG 0.738378 8_3:-7374712 None:intergenic
CAAACCTGAAATCATCCCTG+GGG 0.777747 8_3:+7373071 Msa1273620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTAATTATTTTTCTTAAA+AGG + chr8_3:7370000-7370019 Msa1273620:intron 10.0%
!!! TAATTTTATAGAGTAAAAAA+AGG + chr8_3:7371156-7371175 Msa1273620:intron 10.0%
!!! TTATTAAAAACTTCTATTTT+TGG - chr8_3:7371717-7371736 None:intergenic 10.0%
!!! TTATTTAATTTGTAGTATTA+AGG + chr8_3:7372153-7372172 Msa1273620:intron 10.0%
!!! TATGGTTGATATTTTTTTTT+TGG + chr8_3:7369626-7369645 Msa1273620:intron 15.0%
!!! AATATTATCATTTTTATGAC+CGG - chr8_3:7369730-7369749 None:intergenic 15.0%
!! ATAATAATAAGTTATAAGCA+AGG - chr8_3:7369800-7369819 None:intergenic 15.0%
!!! AATAAAATAATTTGTAACAC+AGG - chr8_3:7369833-7369852 None:intergenic 15.0%
!! AAAATATTAATAACTAACGA+AGG + chr8_3:7369924-7369943 Msa1273620:intron 15.0%
!! ACATAAATAAAAAATGATAG+TGG - chr8_3:7370047-7370066 None:intergenic 15.0%
!! TAAAAAAAAATTATTCACTG+CGG - chr8_3:7370444-7370463 None:intergenic 15.0%
!!! AATTTTTTTGTTTTTGTTGA+GGG - chr8_3:7370642-7370661 None:intergenic 15.0%
!!! TAATTTTTTTGTTTTTGTTG+AGG - chr8_3:7370643-7370662 None:intergenic 15.0%
!! AAAAATTATCTTTCTACATT+CGG + chr8_3:7370655-7370674 Msa1273620:intron 15.0%
!! ACAGACAAAATTATAATAAT+AGG - chr8_3:7371310-7371329 None:intergenic 15.0%
!!! CTATTTTAGTAAAAAAATGT+TGG + chr8_3:7371639-7371658 Msa1273620:intron 15.0%
!! TGTAAAATAACATATAAAGT+GGG - chr8_3:7371665-7371684 None:intergenic 15.0%
!! TTGTAAAATAACATATAAAG+TGG - chr8_3:7371666-7371685 None:intergenic 15.0%
!!! TATTTTTCAAAGGTATTTTT+AGG - chr8_3:7372098-7372117 None:intergenic 15.0%
!! ACATATTTATATGATATAAG+AGG + chr8_3:7373648-7373667 Msa1273620:intron 15.0%
!! AACACATTATATTGTAAAAA+AGG - chr8_3:7374515-7374534 None:intergenic 15.0%
!! AATAGTAAAAATATGAAACA+AGG - chr8_3:7374749-7374768 None:intergenic 15.0%
!! TTTGTTTGTATAAAATGTAA+AGG + chr8_3:7375398-7375417 Msa1273620:three_prime_UTR 15.0%
!! TTGTTTGTATAAAATGTAAA+GGG + chr8_3:7375399-7375418 Msa1273620:three_prime_UTR 15.0%
!! CAATATATATGTGTTAAAAA+GGG + chr8_3:7375425-7375444 Msa1273620:three_prime_UTR 15.0%
!!! TGATCAAAGTTTTTTTCATT+TGG + chr8_3:7369458-7369477 Msa1273620:five_prime_UTR 20.0%
!!! TTGATATTTTTTTTTTGGAG+AGG + chr8_3:7369631-7369650 Msa1273620:intron 20.0%
!! AAATAATCATTATCATGATC+CGG + chr8_3:7369708-7369727 Msa1273620:intron 20.0%
!! AAATATATGTTACAGAAAAG+AGG - chr8_3:7369767-7369786 None:intergenic 20.0%
!! GATTGGAAAAAGAATAATAT+AGG - chr8_3:7369877-7369896 None:intergenic 20.0%
!!! GTTATGATAATATTGATGAT+TGG - chr8_3:7369894-7369913 None:intergenic 20.0%
!! AAAAAAAAATTATTCACTGC+GGG - chr8_3:7370443-7370462 None:intergenic 20.0%
!!! AAAGTTTTTTTAAGCTTCAA+TGG + chr8_3:7370472-7370491 Msa1273620:intron 20.0%
!!! AAACTTTCATTGATAGTTAA+AGG - chr8_3:7370568-7370587 None:intergenic 20.0%
!!! ATTTTTTTGTTTTTGTTGAG+GGG - chr8_3:7370641-7370660 None:intergenic 20.0%
!! TACAACAATCAAAATAGAAT+TGG + chr8_3:7370879-7370898 Msa1273620:intron 20.0%
!! TAAATCATCTTATTATCAAC+TGG + chr8_3:7371107-7371126 Msa1273620:intron 20.0%
!! AGTTTAATAATTGTTTGATC+AGG + chr8_3:7371354-7371373 Msa1273620:intron 20.0%
!! CAATCATATAAAGTTTATGT+GGG + chr8_3:7371913-7371932 Msa1273620:intron 20.0%
!! AATCATATAAAGTTTATGTG+GGG + chr8_3:7371914-7371933 Msa1273620:intron 20.0%
!!! GTTTCAAAGATATTTTTCAA+AGG - chr8_3:7372108-7372127 None:intergenic 20.0%
!! ATTCTTTCATTTCAAAGATT+TGG - chr8_3:7372313-7372332 None:intergenic 20.0%
!!! AATAAGTTGAAAATAGCTTA+TGG - chr8_3:7372561-7372580 None:intergenic 20.0%
!!! CAGTATTAATTTTTTCTTTC+AGG + chr8_3:7373197-7373216 Msa1273620:intron 20.0%
!! TAGAACTAAAAGAAGTTTAT+TGG + chr8_3:7373680-7373699 Msa1273620:intron 20.0%
!! CTGTAGAAAATAATAACAAT+AGG - chr8_3:7373730-7373749 None:intergenic 20.0%
!!! TATTTTTACTATTTCGTAGA+CGG + chr8_3:7374756-7374775 Msa1273620:intron 20.0%
!! TTCATTGAAATATATTCTGA+TGG + chr8_3:7374910-7374929 Msa1273620:intron 20.0%
!! TAATGAACATCAAAAAGAAT+TGG + chr8_3:7375221-7375240 Msa1273620:CDS 20.0%
!! GCAATATATATGTGTTAAAA+AGG + chr8_3:7375424-7375443 Msa1273620:three_prime_UTR 20.0%
! ATGATATCAGAGAAAAATGA+GGG - chr8_3:7369534-7369553 None:intergenic 25.0%
!! ATAATTTGTAACACAGGTTA+TGG - chr8_3:7369827-7369846 None:intergenic 25.0%
! CAATATTATCATAACATCAC+AGG + chr8_3:7369899-7369918 Msa1273620:intron 25.0%
!!! GGCTTTGTCATATATTTTTT+TGG - chr8_3:7370257-7370276 None:intergenic 25.0%
! AAAAATATATGACAAAGCCT+AGG + chr8_3:7370258-7370277 Msa1273620:intron 25.0%
! AAAAAAAATTATTCACTGCG+GGG - chr8_3:7370442-7370461 None:intergenic 25.0%
!!! TTTTTTTGTTTTTGTTGAGG+GGG - chr8_3:7370640-7370659 None:intergenic 25.0%
!! TAGTATTAGGATTTTGTTAG+CGG - chr8_3:7371053-7371072 None:intergenic 25.0%
! ATTACAAACTATGCACAAAT+TGG - chr8_3:7371256-7371275 None:intergenic 25.0%
! GATAGAGAAACTAACATAAA+AGG - chr8_3:7371607-7371626 None:intergenic 25.0%
!! TTAAAGAAAGAAAGTTTTGC+TGG + chr8_3:7371688-7371707 Msa1273620:intron 25.0%
! CCACATAAACTTTATATGAT+TGG - chr8_3:7371915-7371934 None:intergenic 25.0%
! CCAATCATATAAAGTTTATG+TGG + chr8_3:7371912-7371931 Msa1273620:intron 25.0%
! TAAATCCCATCAAATTATGT+GGG - chr8_3:7371940-7371959 None:intergenic 25.0%
! ATAAATCCCATCAAATTATG+TGG - chr8_3:7371941-7371960 None:intergenic 25.0%
! CATCATTGTATTATGTTATG+AGG + chr8_3:7372028-7372047 Msa1273620:intron 25.0%
!!! AGGTATTTTTAGGTGTTTAT+AGG - chr8_3:7372088-7372107 None:intergenic 25.0%
!!! ATATCTTTGAAACTTGAAAC+TGG + chr8_3:7372115-7372134 Msa1273620:intron 25.0%
! GTGTTACAAATCTATAAACA+AGG - chr8_3:7372183-7372202 None:intergenic 25.0%
!! TTTATTACATGTTTGGAGTA+AGG - chr8_3:7372484-7372503 None:intergenic 25.0%
! GATAAGGTTTATTACATGTT+TGG - chr8_3:7372491-7372510 None:intergenic 25.0%
!! GGAAATGTAATAAAAAGTGT+AGG - chr8_3:7372540-7372559 None:intergenic 25.0%
!!! CTTATTTCTATAAGCTCTTA+AGG + chr8_3:7372575-7372594 Msa1273620:intron 25.0%
! ATAATCTGTGAATCAATACT+AGG + chr8_3:7372664-7372683 Msa1273620:intron 25.0%
! ATCAATACTAGGATATGAAA+AGG + chr8_3:7372675-7372694 Msa1273620:intron 25.0%
! AAAAACCAAAGTTACCTTTA+TGG + chr8_3:7372712-7372731 Msa1273620:intron 25.0%
!! CAAGTATATCTCATTTTCAT+AGG + chr8_3:7372946-7372965 Msa1273620:intron 25.0%
! TAAAATTGATGAACTCAAAG+AGG + chr8_3:7373029-7373048 Msa1273620:CDS 25.0%
!!! ATACGTATATGATTAGCTTA+TGG + chr8_3:7373146-7373165 Msa1273620:intron 25.0%
! AAATTAATACTGCTCAGAAA+AGG - chr8_3:7373189-7373208 None:intergenic 25.0%
! TATTGTAAACTTAGCCATAT+TGG - chr8_3:7373328-7373347 None:intergenic 25.0%
! CTAAGAAAAATCCAATTAAC+TGG + chr8_3:7374009-7374028 Msa1273620:CDS 25.0%
! CAAAGTTACCTTATTGAAAA+GGG - chr8_3:7374269-7374288 None:intergenic 25.0%
! ACAAAGTTACCTTATTGAAA+AGG - chr8_3:7374270-7374289 None:intergenic 25.0%
! AATGAATGTATGATAGATTG+TGG - chr8_3:7374473-7374492 None:intergenic 25.0%
!!! TTTTTGTTGTTGTTATTTGC+AGG + chr8_3:7374588-7374607 Msa1273620:intron 25.0%
!!! TCTATTGTTCTGAAATTACT+TGG + chr8_3:7374689-7374708 Msa1273620:CDS 25.0%
!!! TAAACTATTTTTCTCTCATC+AGG + chr8_3:7375157-7375176 Msa1273620:intron 25.0%
! AAATTCTTCACTATGATCAA+TGG + chr8_3:7375265-7375284 Msa1273620:CDS 25.0%
! AATTCTTCACTATGATCAAT+GGG + chr8_3:7375266-7375285 Msa1273620:CDS 25.0%
! CATAAACAAAAATATGCTAG+TGG - chr8_3:7375369-7375388 None:intergenic 25.0%
! AAATTTATAACATCTTCGAG+TGG - chr8_3:7375525-7375544 None:intergenic 25.0%
! AATTCATATAAGTTCTTCTC+TGG - chr8_3:7375550-7375569 None:intergenic 25.0%
GATGATATCAGAGAAAAATG+AGG - chr8_3:7369535-7369554 None:intergenic 30.0%
CTATTTCCTCCTACTAAAAA+AGG - chr8_3:7369953-7369972 None:intergenic 30.0%
GTGTATGTTAAAGTTATACG+AGG + chr8_3:7370202-7370221 Msa1273620:intron 30.0%
CATTTCCTTACCGAATAATT+CGG + chr8_3:7370537-7370556 Msa1273620:intron 30.0%
TTATCTTTCTACATTCGGTT+AGG + chr8_3:7370660-7370679 Msa1273620:intron 30.0%
TATCTTTCTACATTCGGTTA+GGG + chr8_3:7370661-7370680 Msa1273620:intron 30.0%
! TTTTCCCCGATTTCAAAATA+CGG - chr8_3:7370739-7370758 None:intergenic 30.0%
GAAAAGTAGTTTAGATGAGT+CGG + chr8_3:7370958-7370977 Msa1273620:intron 30.0%
! AGTATTAGGATTTTGTTAGC+GGG - chr8_3:7371052-7371071 None:intergenic 30.0%
! CAACTCTCATTGATAGTATT+AGG - chr8_3:7371066-7371085 None:intergenic 30.0%
TTTGCATTGAAGAGAAAAGA+GGG + chr8_3:7371381-7371400 Msa1273620:CDS 30.0%
!!! AGCCTAGTGATTTTAAAACA+TGG + chr8_3:7371487-7371506 Msa1273620:CDS 30.0%
!!! GCCTAGTGATTTTAAAACAT+GGG + chr8_3:7371488-7371507 Msa1273620:CDS 30.0%
!!! TCCCATGTTTTAAAATCACT+AGG - chr8_3:7371492-7371511 None:intergenic 30.0%
!!! AGTGATTTTAAAACATGGGA+TGG + chr8_3:7371492-7371511 Msa1273620:CDS 30.0%
! TGTTTTCTCGTTCTCTTTAA+TGG - chr8_3:7371976-7371995 None:intergenic 30.0%
TGAGGTCTGTTTACTTAATA+AGG + chr8_3:7372046-7372065 Msa1273620:intron 30.0%
! TGTTCATTTTCATAGACTTC+AGG - chr8_3:7372273-7372292 None:intergenic 30.0%
AGTCTATGAAAATGAACACT+CGG + chr8_3:7372275-7372294 Msa1273620:intron 30.0%
TGTCTGCAAATTTAAACAAG+AGG - chr8_3:7372359-7372378 None:intergenic 30.0%
TTTGCAGACACTTAATATAG+TGG + chr8_3:7372369-7372388 Msa1273620:intron 30.0%
! ACATTCAGTCTTATGTGATA+AGG - chr8_3:7372507-7372526 None:intergenic 30.0%
TAAGCTCTTAAGGATAACTT+AGG + chr8_3:7372585-7372604 Msa1273620:intron 30.0%
GATTATGAAGAAATGCAAAG+TGG - chr8_3:7372650-7372669 None:intergenic 30.0%
ATCAACCATAAAGGTAACTT+TGG - chr8_3:7372720-7372739 None:intergenic 30.0%
TAGAGAGAAATCAACCATAA+AGG - chr8_3:7372729-7372748 None:intergenic 30.0%
! CCTCAGATTTAAGATATGTA+TGG - chr8_3:7372906-7372925 None:intergenic 30.0%
CCATACATATCTTAAATCTG+AGG + chr8_3:7372903-7372922 Msa1273620:intron 30.0%
! ATATCTTAAATCTGAGGTGT+TGG + chr8_3:7372909-7372928 Msa1273620:intron 30.0%
!! CATAGGTTTTAATATTGTGC+AGG + chr8_3:7372963-7372982 Msa1273620:intron 30.0%
!! GTTTTAATATTGTGCAGGTA+AGG + chr8_3:7372968-7372987 Msa1273620:intron 30.0%
ATCCTCATATGTAACCAATA+TGG + chr8_3:7373311-7373330 Msa1273620:intron 30.0%
CATGTGATATGTACTAATCA+AGG + chr8_3:7373585-7373604 Msa1273620:intron 30.0%
! AGAACATTCTGCAATTTTTC+AGG + chr8_3:7373878-7373897 Msa1273620:CDS 30.0%
AGAGTTTATGCATATGATGA+TGG - chr8_3:7373914-7373933 None:intergenic 30.0%
TAATTGATCACTGATGCTTA+TGG + chr8_3:7373943-7373962 Msa1273620:intron 30.0%
! AAAATCCAATTAACTGGTTC+TGG + chr8_3:7374015-7374034 Msa1273620:CDS 30.0%
GATGAAAGACATTAAGCTTA+AGG + chr8_3:7374186-7374205 Msa1273620:CDS 30.0%
! ATGCATTAAAGCATCCTATT+TGG + chr8_3:7374209-7374228 Msa1273620:CDS 30.0%
TTTCTTCCTAAACTCCAAAT+AGG - chr8_3:7374226-7374245 None:intergenic 30.0%
!!! CTCTTTTTGTTTTTCCTTCT+TGG + chr8_3:7374375-7374394 Msa1273620:intron 30.0%
ACATTCATTAGTTGAAACAC+AGG + chr8_3:7374484-7374503 Msa1273620:CDS 30.0%
! GAAATATATTCTGATGGATC+AGG + chr8_3:7374916-7374935 Msa1273620:intron 30.0%
TGAAGAATTTCTTCAAGTGT+AGG - chr8_3:7375255-7375274 None:intergenic 30.0%
CGTAATTCAGTGAAATTCAT+CGG - chr8_3:7375617-7375636 None:intergenic 30.0%
!! ACGATACATCACTTTGATTT+TGG + chr8_3:7375634-7375653 Msa1273620:three_prime_UTR 30.0%
TTTGGCTAATTCGTTGATCA+TGG + chr8_3:7369476-7369495 Msa1273620:exon 35.0%
!! AAAAACCTGGAAGTTTTGTG+GGG - chr8_3:7369572-7369591 None:intergenic 35.0%
!! GAAAAACCTGGAAGTTTTGT+GGG - chr8_3:7369573-7369592 None:intergenic 35.0%
! AGAAAAACCTGGAAGTTTTG+TGG - chr8_3:7369574-7369593 None:intergenic 35.0%
TCATCATGCACGTACATATA+TGG + chr8_3:7369608-7369627 Msa1273620:intron 35.0%
!!! CGAAGGTATCCTTTTTTAGT+AGG + chr8_3:7369941-7369960 Msa1273620:intron 35.0%
!!! AGGTATCCTTTTTTAGTAGG+AGG + chr8_3:7369944-7369963 Msa1273620:intron 35.0%
GTAGGAGGAAATAGAGAAAA+AGG + chr8_3:7369959-7369978 Msa1273620:intron 35.0%
AGGGTAACAGGTAAGTATAT+GGG - chr8_3:7370341-7370360 None:intergenic 35.0%
TAGGGTAACAGGTAAGTATA+TGG - chr8_3:7370342-7370361 None:intergenic 35.0%
! ATTTAATTTCTCATCCCCGT+TGG - chr8_3:7370372-7370391 None:intergenic 35.0%
CTAAAATGAGCGCAAATTGT+TGG - chr8_3:7370517-7370536 None:intergenic 35.0%
AAAGGAGCAACCGAATTATT+CGG - chr8_3:7370550-7370569 None:intergenic 35.0%
TTTCCCCGATTTCAAAATAC+GGG - chr8_3:7370738-7370757 None:intergenic 35.0%
TTTAGATGAGTCGGATTTCA+TGG + chr8_3:7370967-7370986 Msa1273620:intron 35.0%
ATCCCTATTCTGTCTTTAGT+GGG - chr8_3:7370993-7371012 None:intergenic 35.0%
AATCCCTATTCTGTCTTTAG+TGG - chr8_3:7370994-7371013 None:intergenic 35.0%
CTTTGCATTGAAGAGAAAAG+AGG + chr8_3:7371380-7371399 Msa1273620:CDS 35.0%
!!! GTTTTAAAATCACTAGGCTG+AGG - chr8_3:7371486-7371505 None:intergenic 35.0%
!! GTGTTGTTAGTCTTGTTTCT+TGG - chr8_3:7371853-7371872 None:intergenic 35.0%
! GACTAACAACACATTTTTCG+AGG + chr8_3:7371861-7371880 Msa1273620:intron 35.0%
! TCCAGAAAGATTTAGAGTTG+TGG + chr8_3:7372399-7372418 Msa1273620:CDS 35.0%
! CCAGAAAGATTTAGAGTTGT+GGG + chr8_3:7372400-7372419 Msa1273620:CDS 35.0%
! CAGAAAGATTTAGAGTTGTG+GGG + chr8_3:7372401-7372420 Msa1273620:CDS 35.0%
AAGAAATGCAAAGTGGAAGA+TGG - chr8_3:7372643-7372662 None:intergenic 35.0%
AGTAACATGTTCGATATTCG+TGG - chr8_3:7372794-7372813 None:intergenic 35.0%
GTAATGTGTTAGTGTCATGT+CGG + chr8_3:7372860-7372879 Msa1273620:intron 35.0%
!! CGTATATGATTAGCTTATGG+AGG + chr8_3:7373149-7373168 Msa1273620:intron 35.0%
AACTATTCCTGTAACTACTG+TGG - chr8_3:7373244-7373263 None:intergenic 35.0%
ACAGTAGTTACAGGAATAGT+TGG + chr8_3:7373243-7373262 Msa1273620:CDS 35.0%
! AGCCATATTGGTTACATATG+AGG - chr8_3:7373316-7373335 None:intergenic 35.0%
GTTAATGCAGTTCAAAGAGA+AGG + chr8_3:7373369-7373388 Msa1273620:intron 35.0%
!! AGTTAATGAGTTTTGACGTC+TGG - chr8_3:7373437-7373456 None:intergenic 35.0%
AACAAAGAGACAATGATTGC+TGG + chr8_3:7373795-7373814 Msa1273620:CDS 35.0%
ATGTTATTCTTGTGAGCAAG+AGG - chr8_3:7373837-7373856 None:intergenic 35.0%
! ATTTTTCTTAGTGCACCCTT+TGG - chr8_3:7374000-7374019 None:intergenic 35.0%
! CGTTTGTCGATTGATAATTC+AGG - chr8_3:7374123-7374142 None:intergenic 35.0%
TCAATCGACAAACGCTAATA+TGG + chr8_3:7374129-7374148 Msa1273620:intron 35.0%
CCATTCTCTGTCAATAATAC+CGG - chr8_3:7374155-7374174 None:intergenic 35.0%
! AAGCATCCTATTTGGAGTTT+AGG + chr8_3:7374217-7374236 Msa1273620:CDS 35.0%
! TTCTGCTACCCTTTTCAATA+AGG + chr8_3:7374258-7374277 Msa1273620:CDS 35.0%
!!! TTTTGTTTTTCCTTCTTGGC+AGG + chr8_3:7374379-7374398 Msa1273620:intron 35.0%
!! TTTGTTTTTCCTTCTTGGCA+GGG + chr8_3:7374380-7374399 Msa1273620:intron 35.0%
ATTGAAGCACACTACTTGTT+TGG + chr8_3:7374413-7374432 Msa1273620:CDS 35.0%
TTCTTCTGTTATTGCACAGT+TGG + chr8_3:7374612-7374631 Msa1273620:CDS 35.0%
TCTTCTGTTATTGCACAGTT+GGG + chr8_3:7374613-7374632 Msa1273620:CDS 35.0%
CATGACAAAGTATAAAGGAG+TGG - chr8_3:7374658-7374677 None:intergenic 35.0%
CACTCCTTTATACTTTGTCA+TGG + chr8_3:7374656-7374675 Msa1273620:CDS 35.0%
TCAGAACAATAGACTCTTTC+TGG - chr8_3:7374682-7374701 None:intergenic 35.0%
GATTGTACTTGGTAAGATCA+AGG - chr8_3:7374720-7374739 None:intergenic 35.0%
CAAGGAGAATTGATTGTACT+TGG - chr8_3:7374731-7374750 None:intergenic 35.0%
ACTTGTAAGACTGTTTGAGA+GGG + chr8_3:7374852-7374871 Msa1273620:intron 35.0%
! ATATTCTGATGGATCAGGTA+TGG + chr8_3:7374921-7374940 Msa1273620:intron 35.0%
TTCTCAATGCAGAATTGCTA+AGG - chr8_3:7375111-7375130 None:intergenic 35.0%
!! AAAACCTGGAAGTTTTGTGG+GGG - chr8_3:7369571-7369590 None:intergenic 40.0%
AAAGACAGGAGAGAAAAACC+TGG - chr8_3:7369585-7369604 None:intergenic 40.0%
ACTTCTTCCTATAAGCTGCA+TGG + chr8_3:7370119-7370138 Msa1273620:intron 40.0%
TCTCTATCCATGCAGCTTAT+AGG - chr8_3:7370129-7370148 None:intergenic 40.0%
AGAGATATGCTACCTGAGTA+CGG + chr8_3:7370144-7370163 Msa1273620:intron 40.0%
TATATGACAAAGCCTAGGCA+TGG + chr8_3:7370263-7370282 Msa1273620:intron 40.0%
AGTATATGGGAGTAGGAGAT+GGG - chr8_3:7370328-7370347 None:intergenic 40.0%
AAGTATATGGGAGTAGGAGA+TGG - chr8_3:7370329-7370348 None:intergenic 40.0%
ACAGGTAAGTATATGGGAGT+AGG - chr8_3:7370335-7370354 None:intergenic 40.0%
AAAATTATTCACTGCGGGGA+CGG - chr8_3:7370438-7370457 None:intergenic 40.0%
AGCAACCGAATTATTCGGTA+AGG - chr8_3:7370545-7370564 None:intergenic 40.0%
TTCTACATTCGGTTAGGGTT+TGG + chr8_3:7370666-7370685 Msa1273620:intron 40.0%
TCTACATTCGGTTAGGGTTT+GGG + chr8_3:7370667-7370686 Msa1273620:intron 40.0%
CGATTTCAAAATACGGGTAC+GGG - chr8_3:7370732-7370751 None:intergenic 40.0%
CCGATTTCAAAATACGGGTA+CGG - chr8_3:7370733-7370752 None:intergenic 40.0%
!!! CCGTACCCGTATTTTGAAAT+CGG + chr8_3:7370730-7370749 Msa1273620:intron 40.0%
!!! CGTACCCGTATTTTGAAATC+GGG + chr8_3:7370731-7370750 Msa1273620:intron 40.0%
!!! GTACCCGTATTTTGAAATCG+GGG + chr8_3:7370732-7370751 Msa1273620:intron 40.0%
ATACCCAAACCCAGTCAAAT+CGG + chr8_3:7370768-7370787 Msa1273620:intron 40.0%
GAACGACACTTTGTTAGACA+AGG - chr8_3:7370853-7370872 None:intergenic 40.0%
!! GTCTAACAAAGTGTCGTTCA+TGG + chr8_3:7370854-7370873 Msa1273620:intron 40.0%
!! CCTAAGACAGAAATGGGTTT+TGG - chr8_3:7371519-7371538 None:intergenic 40.0%
CCAAAACCCATTTCTGTCTT+AGG + chr8_3:7371516-7371535 Msa1273620:CDS 40.0%
GTTGAGCCTAAGACAGAAAT+GGG - chr8_3:7371525-7371544 None:intergenic 40.0%
AGTTGAGCCTAAGACAGAAA+TGG - chr8_3:7371526-7371545 None:intergenic 40.0%
ATTTCTGTCTTAGGCTCAAC+TGG + chr8_3:7371525-7371544 Msa1273620:CDS 40.0%
! TTAGGCTCAACTGGTTCAAT+TGG + chr8_3:7371534-7371553 Msa1273620:CDS 40.0%
! AACTGGTTCAATTGGAACTC+AGG + chr8_3:7371542-7371561 Msa1273620:CDS 40.0%
CCCACAACTCTAAATCTTTC+TGG - chr8_3:7372403-7372422 None:intergenic 40.0%
TGTTACTCTTCTTGCTGAAC+AGG + chr8_3:7372441-7372460 Msa1273620:CDS 40.0%
ATCAGTGCTTCATAGCTCAA+AGG - chr8_3:7372767-7372786 None:intergenic 40.0%
! TCTCTAAGAGCTACTAACTC+AGG - chr8_3:7373003-7373022 None:intergenic 40.0%
TGATGAACTCAAAGAGGCTT+TGG + chr8_3:7373035-7373054 Msa1273620:CDS 40.0%
ACAAACCTGAAATCATCCCT+GGG + chr8_3:7373070-7373089 Msa1273620:CDS 40.0%
! TTTTCTACAGCCAACAGTTG+CGG + chr8_3:7373740-7373759 Msa1273620:intron 40.0%
AAAGAGACAATGATTGCTGG+AGG + chr8_3:7373798-7373817 Msa1273620:CDS 40.0%
TTCTCTTCACAGTGTATCCA+AGG + chr8_3:7373970-7373989 Msa1273620:intron 40.0%
TGTATCCAAGGTTTGCCAAA+GGG + chr8_3:7373982-7374001 Msa1273620:CDS 40.0%
!! ATCCAATTAACTGGTTCTGG+AGG + chr8_3:7374018-7374037 Msa1273620:CDS 40.0%
CCGGTATTATTGACAGAGAA+TGG + chr8_3:7374152-7374171 Msa1273620:intron 40.0%
ATGTCTTTCATCTTCTCAGC+AGG - chr8_3:7374178-7374197 None:intergenic 40.0%
CTGGCCATGACAAAGTATAA+AGG - chr8_3:7374663-7374682 None:intergenic 40.0%
CACTTGTAAGACTGTTTGAG+AGG + chr8_3:7374851-7374870 Msa1273620:intron 40.0%
CTTGTAAGACTGTTTGAGAG+GGG + chr8_3:7374853-7374872 Msa1273620:intron 40.0%
GATGGAAACTTCTTAGTGTC+TGG - chr8_3:7374966-7374985 None:intergenic 40.0%
GCATAGCAAAGATTCACTGA+TGG - chr8_3:7374984-7375003 None:intergenic 40.0%
TTGAATCTCATGTAGCTGTG+TGG + chr8_3:7375329-7375348 Msa1273620:exon 40.0%
CGAGTGGAAGAACTACATAT+TGG - chr8_3:7375509-7375528 None:intergenic 40.0%
! GTTTTGTGGGGGTGATAACT+GGG - chr8_3:7369560-7369579 None:intergenic 45.0%
!! AGTTTTGTGGGGGTGATAAC+TGG - chr8_3:7369561-7369580 None:intergenic 45.0%
GTGCATGATGAGACAAAGAC+AGG - chr8_3:7369599-7369618 None:intergenic 45.0%
TGCATCTTGTATCCGTACTC+AGG - chr8_3:7370159-7370178 None:intergenic 45.0%
GTATATGGGAGTAGGAGATG+GGG - chr8_3:7370327-7370346 None:intergenic 45.0%
TTGGATATGGGTAGGGTAAC+AGG - chr8_3:7370353-7370372 None:intergenic 45.0%
GTTACCCTACCCATATCCAA+CGG + chr8_3:7370353-7370372 Msa1273620:intron 45.0%
TTACCCTACCCATATCCAAC+GGG + chr8_3:7370354-7370373 Msa1273620:intron 45.0%
TTCTCATCCCCGTTGGATAT+GGG - chr8_3:7370365-7370384 None:intergenic 45.0%
TTTCTCATCCCCGTTGGATA+TGG - chr8_3:7370366-7370385 None:intergenic 45.0%
AAATTATTCACTGCGGGGAC+GGG - chr8_3:7370437-7370456 None:intergenic 45.0%
ATTCGGTTAGGGTTTGGGTA+TGG + chr8_3:7370672-7370691 Msa1273620:intron 45.0%
TTCGGTTAGGGTTTGGGTAT+GGG + chr8_3:7370673-7370692 Msa1273620:intron 45.0%
TTAGGGTTTGGGTATGGGTT+CGG + chr8_3:7370678-7370697 Msa1273620:intron 45.0%
TTCAAAATACGGGTACGGGA+CGG - chr8_3:7370728-7370747 None:intergenic 45.0%
TACCCAAACCCAGTCAAATC+GGG + chr8_3:7370769-7370788 Msa1273620:intron 45.0%
TGGCCCACTAAAGACAGAAT+AGG + chr8_3:7370987-7371006 Msa1273620:intron 45.0%
GGCCCACTAAAGACAGAATA+GGG + chr8_3:7370988-7371007 Msa1273620:intron 45.0%
TGGGGCCCACATAATTTGAT+GGG + chr8_3:7371932-7371951 Msa1273620:intron 45.0%
CACAAACCTGAAATCATCCC+TGG + chr8_3:7373069-7373088 Msa1273620:CDS 45.0%
CAAACCTGAAATCATCCCTG+GGG + chr8_3:7373071-7373090 Msa1273620:CDS 45.0%
ACAGGAATAGTTGGTTGTGC+AGG + chr8_3:7373252-7373271 Msa1273620:CDS 45.0%
AGTTGGTTGTGCAGGATTGA+AGG + chr8_3:7373260-7373279 Msa1273620:CDS 45.0%
AGTGACTACGTACACGTTCT+TGG - chr8_3:7373472-7373491 None:intergenic 45.0%
! GCAGAATGTTCTGAATCAGC+AGG - chr8_3:7373870-7373889 None:intergenic 45.0%
GTGTATCCAAGGTTTGCCAA+AGG + chr8_3:7373981-7374000 Msa1273620:intron 45.0%
CACCTCCAGAACCAGTTAAT+TGG - chr8_3:7374023-7374042 None:intergenic 45.0%
TCGACAAACGCTAATATGGC+CGG + chr8_3:7374133-7374152 Msa1273620:intron 45.0%
ACTTCTAAACCCTGCCAAGA+AGG - chr8_3:7374392-7374411 None:intergenic 45.0%
AGTTGGGATTACCTGACATG+CGG + chr8_3:7374629-7374648 Msa1273620:CDS 45.0%
TACTTGGTAAGATCAAGGCG+AGG - chr8_3:7374715-7374734 None:intergenic 45.0%
! GTGAATCTTTGCTATGCTGC+CGG + chr8_3:7374987-7375006 Msa1273620:CDS 45.0%
GTTTGCAGCACTAAGAACTC+CGG - chr8_3:7375033-7375052 None:intergenic 45.0%
GTAGCTGTGTGGTCAATTGT+TGG + chr8_3:7375340-7375359 Msa1273620:three_prime_UTR 45.0%
!!! AATTATTTTATTGAATTAAA+TGG + chr8_3:7369841-7369860 Msa1273620:intron 5.0%
!!! TATATTGTATATATTTTTAA+GGG - chr8_3:7371227-7371246 None:intergenic 5.0%
!!! TTATATTGTATATATTTTTA+AGG - chr8_3:7371228-7371247 None:intergenic 5.0%
ATGAGGGCTTCACTTGAGCT+GGG - chr8_3:7369518-7369537 None:intergenic 50.0%
AATGAGGGCTTCACTTGAGC+TGG - chr8_3:7369519-7369538 None:intergenic 50.0%
ATCACCCCCACAAAACTTCC+AGG + chr8_3:7369564-7369583 Msa1273620:CDS 50.0%
ACAAAGCCTAGGCATGGCAA+TGG + chr8_3:7370269-7370288 Msa1273620:intron 50.0%
CAAAGCCTAGGCATGGCAAT+GGG + chr8_3:7370270-7370289 Msa1273620:intron 50.0%
AAAGCCTAGGCATGGCAATG+GGG + chr8_3:7370271-7370290 Msa1273620:intron 50.0%
TACCCTACCCATATCCAACG+GGG + chr8_3:7370355-7370374 Msa1273620:intron 50.0%
ATCCCCGTTGGATATGGGTA+GGG - chr8_3:7370360-7370379 None:intergenic 50.0%
AATTATTCACTGCGGGGACG+GGG - chr8_3:7370436-7370455 None:intergenic 50.0%
TAGGGTTTGGGTATGGGTTC+GGG + chr8_3:7370679-7370698 Msa1273620:intron 50.0%
TCAAAATACGGGTACGGGAC+GGG - chr8_3:7370727-7370746 None:intergenic 50.0%
ACCCAAACCCAGTCAAATCG+GGG + chr8_3:7370770-7370789 Msa1273620:intron 50.0%
! TCCCCGATTTGACTGGGTTT+GGG - chr8_3:7370774-7370793 None:intergenic 50.0%
! TTCCCCGATTTGACTGGGTT+TGG - chr8_3:7370775-7370794 None:intergenic 50.0%
!! GGGTTTTCCCCGATTTGACT+GGG - chr8_3:7370780-7370799 None:intergenic 50.0%
TCGGGGAAAACCCGTCAAAT+CGG + chr8_3:7370787-7370806 Msa1273620:intron 50.0%
AAAACCCGTCAAATCGGGGT+TGG + chr8_3:7370793-7370812 Msa1273620:intron 50.0%
! CAAACCAACCCCGATTTGAC+GGG - chr8_3:7370800-7370819 None:intergenic 50.0%
! CCAAACCAACCCCGATTTGA+CGG - chr8_3:7370801-7370820 None:intergenic 50.0%
!! CGTCAAATCGGGGTTGGTTT+GGG + chr8_3:7370799-7370818 Msa1273620:intron 50.0%
GTGGGGCCCACATAATTTGA+TGG + chr8_3:7371931-7371950 Msa1273620:intron 50.0%
TGTCGGACACTGACACATGT+TGG + chr8_3:7372877-7372896 Msa1273620:intron 50.0%
!! CTGAGGTGTTGGTACTACGT+CGG + chr8_3:7372920-7372939 Msa1273620:intron 50.0%
! GAACTCAAAGAGGCTTTGGC+TGG + chr8_3:7373039-7373058 Msa1273620:CDS 50.0%
TAACTACTGTGGCCGCATCA+GGG - chr8_3:7373233-7373252 None:intergenic 50.0%
AGCACTAAGAACTCCGGTCA+TGG - chr8_3:7375027-7375046 None:intergenic 50.0%
TGGGCAAGACAATATGCTGC+TGG + chr8_3:7375285-7375304 Msa1273620:CDS 50.0%
TGAGGGCTTCACTTGAGCTG+GGG - chr8_3:7369517-7369536 None:intergenic 55.0%
TGGGAGTAGGAGATGGGGAT+GGG - chr8_3:7370322-7370341 None:intergenic 55.0%
ATGGGAGTAGGAGATGGGGA+TGG - chr8_3:7370323-7370342 None:intergenic 55.0%
CATCCCCGTTGGATATGGGT+AGG - chr8_3:7370361-7370380 None:intergenic 55.0%
AATCTCATCCCCGTCCCCAA+TGG + chr8_3:7370389-7370408 Msa1273620:intron 55.0%
ATCTCATCCCCGTCCCCAAT+GGG + chr8_3:7370390-7370409 Msa1273620:intron 55.0%
ATACCCGAACCCATTGGGGA+CGG - chr8_3:7370402-7370421 None:intergenic 55.0%
GGGAATACCCGAACCCATTG+GGG - chr8_3:7370406-7370425 None:intergenic 55.0%
CGGGAATACCCGAACCCATT+GGG - chr8_3:7370407-7370426 None:intergenic 55.0%
AGGGTTTGGGTATGGGTTCG+GGG + chr8_3:7370680-7370699 Msa1273620:intron 55.0%
TTTGGGTATGGGTTCGGGGT+GGG + chr8_3:7370684-7370703 Msa1273620:intron 55.0%
!! CGGGTTTTCCCCGATTTGAC+TGG - chr8_3:7370781-7370800 None:intergenic 55.0%
CGGGGAAAACCCGTCAAATC+GGG + chr8_3:7370788-7370807 Msa1273620:intron 55.0%
GGGGAAAACCCGTCAAATCG+GGG + chr8_3:7370789-7370808 Msa1273620:intron 55.0%
!! CCGTCAAATCGGGGTTGGTT+TGG + chr8_3:7370798-7370817 Msa1273620:intron 55.0%
!! CAAATCGGGGTTGGTTTGGG+CGG + chr8_3:7370802-7370821 Msa1273620:intron 55.0%
!! AAATCGGGGTTGGTTTGGGC+GGG + chr8_3:7370803-7370822 Msa1273620:intron 55.0%
GCAACAAAACCCGTGCCCAT+GGG - chr8_3:7370831-7370850 None:intergenic 55.0%
ATAGCTGTTCCTGGCCAAGC+TGG - chr8_3:7371462-7371481 None:intergenic 55.0%
GGCTGAGGAATAGCTGTTCC+TGG - chr8_3:7371471-7371490 None:intergenic 55.0%
TGCTCCCCAGGGATGATTTC+AGG - chr8_3:7373078-7373097 None:intergenic 55.0%
GAAATCATCCCTGGGGAGCA+AGG + chr8_3:7373078-7373097 Msa1273620:CDS 55.0%
CAATGACTCCTTGCTCCCCA+GGG - chr8_3:7373089-7373108 None:intergenic 55.0%
TCAATGACTCCTTGCTCCCC+AGG - chr8_3:7373090-7373109 None:intergenic 55.0%
TGGGGAGCAAGGAGTCATTG+AGG + chr8_3:7373089-7373108 Msa1273620:CDS 55.0%
GTAACTACTGTGGCCGCATC+AGG - chr8_3:7373234-7373253 None:intergenic 55.0%
GATGCGGCCACAGTAGTTAC+AGG + chr8_3:7373234-7373253 Msa1273620:CDS 55.0%
GCTTCAATCGCCGCAACTGT+TGG - chr8_3:7373753-7373772 None:intergenic 55.0%
ACAGTTGCGGCGATTGAAGC+AGG + chr8_3:7373753-7373772 Msa1273620:CDS 55.0%
CAGTTGCGGCGATTGAAGCA+GGG + chr8_3:7373754-7373773 Msa1273620:CDS 55.0%
GTGCACCCTTTGGCAAACCT+TGG - chr8_3:7373990-7374009 None:intergenic 55.0%
!! CTGGTTCTGGAGGTGCTTTC+AGG + chr8_3:7374028-7374047 Msa1273620:CDS 55.0%
GGCTTCACTTGAGCTGGGGA+GGG - chr8_3:7369513-7369532 None:intergenic 60.0%
CCTAGGCATGGCAATGGGGT+GGG + chr8_3:7370275-7370294 Msa1273620:intron 60.0%
CTAGGCATGGCAATGGGGTG+GGG + chr8_3:7370276-7370295 Msa1273620:intron 60.0%
GTAGGAGATGGGGATGGGGA+AGG - chr8_3:7370317-7370336 None:intergenic 60.0%
GGGAGTAGGAGATGGGGATG+GGG - chr8_3:7370321-7370340 None:intergenic 60.0%
! ATCCCCGTCCCCAATGGGTT+CGG + chr8_3:7370395-7370414 Msa1273620:intron 60.0%
TACCCGAACCCATTGGGGAC+GGG - chr8_3:7370401-7370420 None:intergenic 60.0%
GCGGGAATACCCGAACCCAT+TGG - chr8_3:7370408-7370427 None:intergenic 60.0%
GTTTGGGTATGGGTTCGGGG+TGG + chr8_3:7370683-7370702 Msa1273620:intron 60.0%
!! TTGGTTTGGGCGGGTACCCA+TGG + chr8_3:7370812-7370831 Msa1273620:intron 60.0%
! TGGTTTGGGCGGGTACCCAT+GGG + chr8_3:7370813-7370832 Msa1273620:intron 60.0%
GGCAACAAAACCCGTGCCCA+TGG - chr8_3:7370832-7370851 None:intergenic 60.0%
CACACTCACCACCACCAGCT+TGG + chr8_3:7371445-7371464 Msa1273620:CDS 60.0%
AGAGTTGTGGGGCTTGCAGC+TGG + chr8_3:7372412-7372431 Msa1273620:CDS 60.0%
GGTTGCTCGTCACCCTGATG+CGG + chr8_3:7373218-7373237 Msa1273620:intron 60.0%
AGGAGTGGCAACCGCATGTC+AGG - chr8_3:7374643-7374662 None:intergenic 60.0%
GGGCTTCACTTGAGCTGGGG+AGG - chr8_3:7369514-7369533 None:intergenic 65.0%
GCCTAGGCATGGCAATGGGG+TGG + chr8_3:7370274-7370293 Msa1273620:intron 65.0%
CCCACCCCATTGCCATGCCT+AGG - chr8_3:7370278-7370297 None:intergenic 65.0%
CATGGCAATGGGGTGGGGTG+CGG + chr8_3:7370281-7370300 Msa1273620:intron 65.0%
! TCCCCGTCCCCAATGGGTTC+GGG + chr8_3:7370396-7370415 Msa1273620:intron 65.0%
ACCCGAACCCATTGGGGACG+GGG - chr8_3:7370400-7370419 None:intergenic 65.0%
TTCACTGCGGGGACGGGGAT+GGG - chr8_3:7370431-7370450 None:intergenic 65.0%
ATTCACTGCGGGGACGGGGA+TGG - chr8_3:7370432-7370451 None:intergenic 65.0%
TCACCACCACCAGCTTGGCC+AGG + chr8_3:7371450-7371469 Msa1273620:CDS 65.0%
GTTCCTGGCCAAGCTGGTGG+TGG - chr8_3:7371456-7371475 None:intergenic 65.0%
GCTGTTCCTGGCCAAGCTGG+TGG - chr8_3:7371459-7371478 None:intergenic 65.0%
TGCTATGCTGCCGGACGTGC+TGG + chr8_3:7374996-7375015 Msa1273620:CDS 65.0%
TATGCTGCCGGACGTGCTGG+AGG + chr8_3:7374999-7375018 Msa1273620:CDS 65.0%
CATGGTGCCTCCAGCACGTC+CGG - chr8_3:7375009-7375028 None:intergenic 65.0%
!! CGTGCTGGAGGCACCATGAC+CGG + chr8_3:7375011-7375030 Msa1273620:CDS 65.0%
GCAATGGGGTGGGGTGCGGA+CGG + chr8_3:7370285-7370304 Msa1273620:intron 70.0%
CAATGGGGTGGGGTGCGGAC+GGG + chr8_3:7370286-7370305 Msa1273620:intron 70.0%
TCACTGCGGGGACGGGGATG+GGG - chr8_3:7370430-7370449 None:intergenic 70.0%
CGGGTACGGGACGGGTAACG+AGG - chr8_3:7370719-7370738 None:intergenic 70.0%
TGGGCGGGTACCCATGGGCA+CGG + chr8_3:7370818-7370837 Msa1273620:intron 70.0%
GGGCGGGTACCCATGGGCAC+GGG + chr8_3:7370819-7370838 Msa1273620:intron 75.0%
! TGCGGGGACGGGGATGGGGC+GGG - chr8_3:7370426-7370445 None:intergenic 80.0%
! CTGCGGGGACGGGGATGGGG+CGG - chr8_3:7370427-7370446 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 7369420 7375732 7369420 ID=Msa1273620;Name=Msa1273620
chr8_3 mRNA 7369420 7375732 7369420 ID=Msa1273620-mRNA-1;Parent=Msa1273620;Name=Msa1273620-mRNA-1;_AED=0.06;_eAED=0.06;_QI=75|1|1|1|1|1|12|400|470
chr8_3 exon 7369420 7369585 7369420 ID=Msa1273620-mRNA-1:exon:2871;Parent=Msa1273620-mRNA-1
chr8_3 exon 7371376 7371563 7371376 ID=Msa1273620-mRNA-1:exon:2872;Parent=Msa1273620-mRNA-1
chr8_3 exon 7372376 7372462 7372376 ID=Msa1273620-mRNA-1:exon:2873;Parent=Msa1273620-mRNA-1
chr8_3 exon 7372985 7373110 7372985 ID=Msa1273620-mRNA-1:exon:2874;Parent=Msa1273620-mRNA-1
chr8_3 exon 7373219 7373281 7373219 ID=Msa1273620-mRNA-1:exon:2875;Parent=Msa1273620-mRNA-1
chr8_3 exon 7373750 7373899 7373750 ID=Msa1273620-mRNA-1:exon:2876;Parent=Msa1273620-mRNA-1
chr8_3 exon 7373982 7374049 7373982 ID=Msa1273620-mRNA-1:exon:2877;Parent=Msa1273620-mRNA-1
chr8_3 exon 7374168 7374279 7374168 ID=Msa1273620-mRNA-1:exon:2878;Parent=Msa1273620-mRNA-1
chr8_3 exon 7374401 7374505 7374401 ID=Msa1273620-mRNA-1:exon:2879;Parent=Msa1273620-mRNA-1
chr8_3 exon 7374610 7374731 7374610 ID=Msa1273620-mRNA-1:exon:2880;Parent=Msa1273620-mRNA-1
chr8_3 exon 7374938 7375084 7374938 ID=Msa1273620-mRNA-1:exon:2881;Parent=Msa1273620-mRNA-1
chr8_3 exon 7375179 7375732 7375179 ID=Msa1273620-mRNA-1:exon:2882;Parent=Msa1273620-mRNA-1
chr8_3 five_prime_UTR 7369420 7369494 7369420 ID=Msa1273620-mRNA-1:five_prime_utr;Parent=Msa1273620-mRNA-1
chr8_3 CDS 7369495 7369585 7369495 ID=Msa1273620-mRNA-1:cds;Parent=Msa1273620-mRNA-1
chr8_3 CDS 7371376 7371563 7371376 ID=Msa1273620-mRNA-1:cds;Parent=Msa1273620-mRNA-1
chr8_3 CDS 7372376 7372462 7372376 ID=Msa1273620-mRNA-1:cds;Parent=Msa1273620-mRNA-1
chr8_3 CDS 7372985 7373110 7372985 ID=Msa1273620-mRNA-1:cds;Parent=Msa1273620-mRNA-1
chr8_3 CDS 7373219 7373281 7373219 ID=Msa1273620-mRNA-1:cds;Parent=Msa1273620-mRNA-1
chr8_3 CDS 7373750 7373899 7373750 ID=Msa1273620-mRNA-1:cds;Parent=Msa1273620-mRNA-1
chr8_3 CDS 7373982 7374049 7373982 ID=Msa1273620-mRNA-1:cds;Parent=Msa1273620-mRNA-1
chr8_3 CDS 7374168 7374279 7374168 ID=Msa1273620-mRNA-1:cds;Parent=Msa1273620-mRNA-1
chr8_3 CDS 7374401 7374505 7374401 ID=Msa1273620-mRNA-1:cds;Parent=Msa1273620-mRNA-1
chr8_3 CDS 7374610 7374731 7374610 ID=Msa1273620-mRNA-1:cds;Parent=Msa1273620-mRNA-1
chr8_3 CDS 7374938 7375084 7374938 ID=Msa1273620-mRNA-1:cds;Parent=Msa1273620-mRNA-1
chr8_3 CDS 7375179 7375332 7375179 ID=Msa1273620-mRNA-1:cds;Parent=Msa1273620-mRNA-1
chr8_3 three_prime_UTR 7375333 7375732 7375333 ID=Msa1273620-mRNA-1:three_prime_utr;Parent=Msa1273620-mRNA-1
Gene Sequence

>Msa1273620

ATGGCTTTGAATTTGCCCTCCCCAGCTCAAGTGAAGCCCTCATTTTTCTCTGATATCATCAACCCAGTTATCACCCCCACAAAACTTCCAGGTAGCTTTGCATTGAAGAGAAAAGAGGGTGACACAAAAGTAGTAAAGAGAAGAGTTTATTGCTCTGCAGCACACTCACCACCACCAGCTTGGCCAGGAACAGCTATTCCTCAGCCTAGTGATTTTAAAACATGGGATGGACCAAAACCCATTTCTGTCTTAGGCTCAACTGGTTCAATTGGAACTCAGACACTTAATATAGTGGCAGAGTTTCCAGAAAGATTTAGAGTTGTGGGGCTTGCAGCTGGTTCAAATGTTACTCTTCTTGCTGAACAGGTAAGGATATTTAAGCCTGAGTTAGTAGCTCTTAGAGACGAGTCTAAAATTGATGAACTCAAAGAGGCTTTGGCTGGTATTGATCACAAACCTGAAATCATCCCTGGGGAGCAAGGAGTCATTGAGGTTGCTCGTCACCCTGATGCGGCCACAGTAGTTACAGGAATAGTTGGTTGTGCAGGATTGAAGCCAACAGTTGCGGCGATTGAAGCAGGGAAAGACATAGCATTAGCTAACAAAGAGACAATGATTGCTGGAGGCGCTTTTGTTCTTCCTCTTGCTCACAAGAATAACATCAAAATTCTTCCTGCTGATTCAGAACATTCTGCAATTTTTCAGTGTATCCAAGGTTTGCCAAAGGGTGCACTAAGAAAAATCCAATTAACTGGTTCTGGAGGTGCTTTCAGAGAATGGCCTGCTGAGAAGATGAAAGACATTAAGCTTAAGGATGCATTAAAGCATCCTATTTGGAGTTTAGGAAGAAAGATAACTATAGATTCTGCTACCCTTTTCAATAAGGGTTTAGAAGTAATTGAAGCACACTACTTGTTTGGAGCAGAATATGATGATATTGAGATTGTTATTCATCCACAATCTATCATACATTCATTAGTTGAAACACAGGATTCTTCTGTTATTGCACAGTTGGGATTACCTGACATGCGGTTGCCACTCCTTTATACTTTGTCATGGCCAGAAAGAGTCTATTGTTCTGAAATTACTTGGCCTCGCCTTGATCTTACCAAGTATGGTTCTCTAACATTTCAAGCTCCAGACACTAAGAAGTTTCCATCAGTGAATCTTTGCTATGCTGCCGGACGTGCTGGAGGCACCATGACCGGAGTTCTTAGTGCTGCAAACGAGATAGCTGTCGAACTGTTTGTTGCAGAAAAGATTAGCTATCTAGATATTTTCAAGATTGCAGAGCTAACATGTAATGAACATCAAAAAGAATTGGTAACATCTCCTACACTTGAAGAAATTCTTCACTATGATCAATGGGCAAGACAATATGCTGCTGGTTTGCAAAAAGCTTTAAGTGTTTGA

Protein sequence

>Msa1273620

MALNLPSPAQVKPSFFSDIINPVITPTKLPGSFALKRKEGDTKVVKRRVYCSAAHSPPPAWPGTAIPQPSDFKTWDGPKPISVLGSTGSIGTQTLNIVAEFPERFRVVGLAAGSNVTLLAEQVRIFKPELVALRDESKIDELKEALAGIDHKPEIIPGEQGVIEVARHPDAATVVTGIVGCAGLKPTVAAIEAGKDIALANKETMIAGGAFVLPLAHKNNIKILPADSEHSAIFQCIQGLPKGALRKIQLTGSGGAFREWPAEKMKDIKLKDALKHPIWSLGRKITIDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSLVETQDSSVIAQLGLPDMRLPLLYTLSWPERVYCSEITWPRLDLTKYGSLTFQAPDTKKFPSVNLCYAAGRAGGTMTGVLSAANEIAVELFVAEKISYLDIFKIAELTCNEHQKELVTSPTLEEILHYDQWARQYAAGLQKALSV*