AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1311600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1311600 MtrunA17_Chr8g0339281 99.362 470 3 0 1 470 1 470 0.0 954
Msa1311600 MtrunA17_Chr4g0059081 74.522 471 116 3 1 469 1 469 0.0 726
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1311600 AT5G62790.1 73.830 470 114 4 1 465 2 467 0.0 696
Msa1311600 AT5G62790.2 70.468 491 115 5 1 465 1 487 0.0 684

Find 107 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAACAATAGACTCTTTC+TGG 0.113929 8_4:-8456008 None:intergenic
CTGGTTCTGGAGGTGCTTTC+AGG 0.116417 8_4:+8455357 Msa1311600:CDS
ACGATACATCACTTTGATTT+TGG 0.128678 8_4:+8456963 Msa1311600:three_prime_UTR
TGCTCCCCAGGGATGATTTC+AGG 0.155639 8_4:-8454404 None:intergenic
GCAATATATATGTGTTAAAA+AGG 0.179844 8_4:+8456753 Msa1311600:three_prime_UTR
CCCACAACTCTAAATCTTTC+TGG 0.190443 8_4:-8453714 None:intergenic
CACCTCCAGAACCAGTTAAT+TGG 0.231332 8_4:-8455349 None:intergenic
ATGCATTAAAGCATCCTATT+TGG 0.236011 8_4:+8455538 Msa1311600:CDS
TTTCTTCCTAAACTCCAAAT+AGG 0.264648 8_4:-8455552 None:intergenic
AAAATCCAATTAACTGGTTC+TGG 0.278312 8_4:+8455344 Msa1311600:CDS
AAGCATCCTATTTGGAGTTT+AGG 0.286041 8_4:+8455546 Msa1311600:CDS
GTAACTACTGTGGCCGCATC+AGG 0.322322 8_4:-8454560 None:intergenic
CCTAAGACAGAGATGGGTTT+TGG 0.331433 8_4:-8452830 None:intergenic
TGTTACTCTTCTTGCTGAAC+AGG 0.340001 8_4:+8453755 Msa1311600:CDS
ATTGAAGCACACTACTTGTT+TGG 0.341913 8_4:+8455742 Msa1311600:CDS
ATCTCTGTCTTAGGCTCAAC+TGG 0.361820 8_4:+8452839 Msa1311600:CDS
TGCTATGCTGCCGGACGTGC+TGG 0.364387 8_4:+8456325 Msa1311600:CDS
TGATGAACTCAAAGAGGCTT+TGG 0.369480 8_4:+8454364 Msa1311600:CDS
ATTTCATATAAGTTCTTCTC+TGG 0.376382 8_4:-8456876 None:intergenic
TTAGGCTCAACTGGTTCAAT+TGG 0.387627 8_4:+8452848 Msa1311600:CDS
CCAAAACCCATCTCTGTCTT+AGG 0.391999 8_4:+8452830 Msa1311600:CDS
AGAGTTGTGGGGCTTGCAGC+TGG 0.407476 8_4:+8453726 Msa1311600:CDS
TCTTCTGTTATTGCACAGTT+GGG 0.407522 8_4:+8455942 Msa1311600:CDS
GATGAAAGACATTAAGCTTA+AGG 0.407814 8_4:+8455515 Msa1311600:CDS
GGCTGAGGAATAGCTGTTCC+TGG 0.408782 8_4:-8452782 None:intergenic
ACAAAGTTACCTTATTGAAA+AGG 0.409791 8_4:-8455596 None:intergenic
CCAGAAAGATTTAGAGTTGT+GGG 0.417586 8_4:+8453714 Msa1311600:CDS
TTCTTCTGTTATTGCACAGT+TGG 0.418400 8_4:+8455941 Msa1311600:CDS
CTGGCCATGACAAAGTATAA+AGG 0.421069 8_4:-8455989 None:intergenic
TTTGTTTGTATAAAATGTAA+AGG 0.425025 8_4:+8456727 Msa1311600:three_prime_UTR
AATGAGGGCTTCACTTGAGC+TGG 0.425141 8_4:-8450831 None:intergenic
AGTTGGTTGTGCAGGATTGA+AGG 0.426456 8_4:+8454589 Msa1311600:CDS
GATGCGGCCACAGTAGTTAC+AGG 0.427903 8_4:+8454563 Msa1311600:CDS
TTTGGCTAATTCGTTGATCA+TGG 0.442514 8_4:+8450791 Msa1311600:exon
TCTATTGTTCTGAAATTACT+TGG 0.443822 8_4:+8456018 Msa1311600:CDS
AAATTCTTCACTATGATCAA+TGG 0.443929 8_4:+8456594 Msa1311600:CDS
AACAAAGAGACAATGATTGC+TGG 0.445010 8_4:+8455124 Msa1311600:CDS
CAAAGTTACCTTATTGAAAA+GGG 0.449932 8_4:-8455595 None:intergenic
CATGGTGCCTCCAGCACGTC+CGG 0.450053 8_4:-8456335 None:intergenic
AGGAGTGGCAACCGCATGTC+AGG 0.450100 8_4:-8455969 None:intergenic
ATGTCTTTCATCTTCTCAGC+AGG 0.451171 8_4:-8455504 None:intergenic
ACAGGAATAGTTGGTTGTGC+AGG 0.452774 8_4:+8454581 Msa1311600:CDS
TTGTTTGTATAAAATGTAAA+GGG 0.455410 8_4:+8456728 Msa1311600:three_prime_UTR
GATGGAAACTTCTTAGTGTC+TGG 0.458287 8_4:-8456292 None:intergenic
AATTCTTCACTATGATCAAT+GGG 0.464591 8_4:+8456595 Msa1311600:CDS
ACAGTAGTTACAGGAATAGT+TGG 0.466428 8_4:+8454572 Msa1311600:CDS
GGGCTTCACTTGAGCTGGGG+AGG 0.469449 8_4:-8450826 None:intergenic
CACAAACCTGAAATCATCCC+TGG 0.472085 8_4:+8454398 Msa1311600:CDS
AACTGGTTCAATTGGAACTC+AGG 0.475794 8_4:+8452856 Msa1311600:CDS
TCAATGACTCCTTGCTCCCC+AGG 0.481009 8_4:-8454416 None:intergenic
GCTTCAATCGCCGCAACTGT+TGG 0.481536 8_4:-8455079 None:intergenic
GTTCCTGGCCAAGCTGGTGG+TGG 0.483247 8_4:-8452767 None:intergenic
GGCTTCACTTGAGCTGGGGA+GGG 0.484400 8_4:-8450825 None:intergenic
CGAGTGGAAGAACTACATAT+TGG 0.486387 8_4:-8456835 None:intergenic
ACAGTTGCGGCGATTGAAGC+AGG 0.491544 8_4:+8455082 Msa1311600:CDS
GTGCACCCTTTGGCAAACCT+TGG 0.492039 8_4:-8455316 None:intergenic
TTCTCTTCACAGTGTATCCA+AGG 0.495462 8_4:+8455299 Msa1311600:intron
TTTGCAGACACTAAATATAG+TGG 0.502520 8_4:+8453683 Msa1311600:intron
CACTCCTTTATACTTTGTCA+TGG 0.504667 8_4:+8455985 Msa1311600:CDS
TCACCACCACCAGCTTGGCC+AGG 0.507652 8_4:+8452764 Msa1311600:CDS
ATGAGGGCTTCACTTGAGCT+GGG 0.509509 8_4:-8450830 None:intergenic
CGTGCTGGAGGCACCATGAC+CGG 0.512996 8_4:+8456340 Msa1311600:CDS
CACACTCACCACCACCAGCT+TGG 0.516652 8_4:+8452759 Msa1311600:CDS
TCCAGAAAGATTTAGAGTTG+TGG 0.529260 8_4:+8453713 Msa1311600:CDS
TGAAGAATTTCTTCAAGTGT+AGG 0.529338 8_4:-8456581 None:intergenic
CTTTGCATTGAAGAGAAAAG+AGG 0.531645 8_4:+8452694 Msa1311600:CDS
GAAATCATCCCTGGGGAGCA+AGG 0.537606 8_4:+8454407 Msa1311600:CDS
GTGAATCTTTGCTATGCTGC+CGG 0.539876 8_4:+8456316 Msa1311600:CDS
GAACTCAAAGAGGCTTTGGC+TGG 0.544181 8_4:+8454368 Msa1311600:CDS
TGTATCCAAGGTTTGCCAAA+GGG 0.545399 8_4:+8455311 Msa1311600:CDS
CGTAATTCAGTGAAATTCAT+CGG 0.546454 8_4:-8456943 None:intergenic
GCAGAATGTTCTGAATCAGC+AGG 0.549134 8_4:-8455196 None:intergenic
GTAGCTGTGTGGTCAATTGT+TGG 0.553090 8_4:+8456669 Msa1311600:three_prime_UTR
TAAAATTGATGAACTCAAAG+AGG 0.559890 8_4:+8454358 Msa1311600:CDS
ATAGCTGTTCCTGGCCAAGC+TGG 0.560525 8_4:-8452773 None:intergenic
TGGGCAAGACAATATGCTGC+TGG 0.564280 8_4:+8456614 Msa1311600:CDS
GTTGAGCCTAAGACAGAGAT+GGG 0.565679 8_4:-8452836 None:intergenic
TGTTGTCAGTGTTCATTGAG+TGG 0.567366 8_4:+8450728 None:intergenic
CAATGACTCCTTGCTCCCCA+GGG 0.582111 8_4:-8454415 None:intergenic
ACAAACCTGAAATCATCCCT+GGG 0.582550 8_4:+8454399 Msa1311600:CDS
TTTGCATTGAAGAGAAAAGA+GGG 0.583030 8_4:+8452695 Msa1311600:CDS
TATGCTGCCGGACGTGCTGG+AGG 0.583393 8_4:+8456328 Msa1311600:CDS
AGTTGAGCCTAAGACAGAGA+TGG 0.584169 8_4:-8452837 None:intergenic
ATCCAATTAACTGGTTCTGG+AGG 0.587262 8_4:+8455347 Msa1311600:CDS
TCTCTAAGAGCTACTAACTC+AGG 0.587556 8_4:-8454329 None:intergenic
AATGAATGTATGATAGATTG+TGG 0.591032 8_4:-8455799 None:intergenic
GCATAGCAAAGATTCACTGA+TGG 0.591366 8_4:-8456310 None:intergenic
AGCACTAAGAACTCCGGTCA+TGG 0.591579 8_4:-8456353 None:intergenic
GCTGTTCCTGGCCAAGCTGG+TGG 0.597035 8_4:-8452770 None:intergenic
CAGAAAGATTTAGAGTTGTG+GGG 0.597402 8_4:+8453715 Msa1311600:CDS
AGCAGGAAAAGACATAGCAT+TGG 0.599243 8_4:+8455099 Msa1311600:CDS
ACATTCATTAGTTGAAACAC+AGG 0.602985 8_4:+8455813 Msa1311600:CDS
TAACTACTGTGGCCGCATCA+GGG 0.604825 8_4:-8454559 None:intergenic
GTGTATCCAAGGTTTGCCAA+AGG 0.606096 8_4:+8455310 Msa1311600:intron
GGTTGCTCGTCACCCTGATG+CGG 0.616790 8_4:+8454547 Msa1311600:intron
TGCTGCAAACGAGATAGCTG+TGG 0.648183 8_4:+8456372 Msa1311600:CDS
CATGACAAAGTATAAAGGAG+TGG 0.651485 8_4:-8455984 None:intergenic
GTTTGCAGCACTAAGAACTC+CGG 0.652712 8_4:-8456359 None:intergenic
AACTATTCCTGTAACTACTG+TGG 0.654183 8_4:-8454570 None:intergenic
TGAGGGCTTCACTTGAGCTG+GGG 0.662479 8_4:-8450829 None:intergenic
AAAGAGACAATGATTGCTGG+AGG 0.669240 8_4:+8455127 Msa1311600:CDS
AAATTTATAACATCTTCGAG+TGG 0.674904 8_4:-8456851 None:intergenic
TGGGGAGCAAGGAGTCATTG+AGG 0.682191 8_4:+8454418 Msa1311600:CDS
AGTTGGGATTACCTGACATG+CGG 0.683657 8_4:+8455958 Msa1311600:CDS
TACTTGGTAAGATCGAGTCG+AGG 0.705310 8_4:-8456041 None:intergenic
TTGAATCTCATGTAGCTGTG+TGG 0.713858 8_4:+8456658 Msa1311600:exon
CAAACCTGAAATCATCCCTG+GGG 0.777747 8_4:+8454400 Msa1311600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTAATTATTTTTCTTAAA+AGG + chr8_4:8451315-8451334 Msa1311600:intron 10.0%
!!! TAATTTTATAGAGTAAAAAA+AGG + chr8_4:8452470-8452489 Msa1311600:intron 10.0%
!!! TTATTAAAAACTTCTATTTT+TGG - chr8_4:8453031-8453050 None:intergenic 10.0%
!!! TTATTTAATTTGTAGTATTA+AGG + chr8_4:8453458-8453477 Msa1311600:intron 10.0%
!!! TATTTAATTTGTAGTATTAA+GGG + chr8_4:8453459-8453478 Msa1311600:intron 10.0%
!!! TATGGTTGATATTTTTTTTT+TGG + chr8_4:8450941-8450960 Msa1311600:intron 15.0%
!!! AATATTATCATTTTTATGAC+CGG - chr8_4:8451045-8451064 None:intergenic 15.0%
!! ATAATAATAAGTTATAAGCA+AGG - chr8_4:8451115-8451134 None:intergenic 15.0%
!!! AATAAAATAATTTGTAACAC+AGG - chr8_4:8451148-8451167 None:intergenic 15.0%
!! AAAATATTAATAACTAACGA+AGG + chr8_4:8451239-8451258 Msa1311600:intron 15.0%
!! TAAAAAAAAATTATTCACTG+CGG - chr8_4:8451759-8451778 None:intergenic 15.0%
!! ACAGACAAAATTATAATAAT+AGG - chr8_4:8452624-8452643 None:intergenic 15.0%
!!! CTATTTTAGTAAAAAAATGT+TGG + chr8_4:8452953-8452972 Msa1311600:intron 15.0%
!! TGTAAAATAACATATAAAGT+GGG - chr8_4:8452979-8452998 None:intergenic 15.0%
!! TTGTAAAATAACATATAAAG+TGG - chr8_4:8452980-8452999 None:intergenic 15.0%
!!! TATTTTTCAAAGGTATTTTT+AGG - chr8_4:8453403-8453422 None:intergenic 15.0%
!! AACACATTATATTGTAAAAA+AGG - chr8_4:8455844-8455863 None:intergenic 15.0%
!! AATAGTAAAAATATGAAACA+AGG - chr8_4:8456078-8456097 None:intergenic 15.0%
!! TTTGTTTGTATAAAATGTAA+AGG + chr8_4:8456727-8456746 Msa1311600:three_prime_UTR 15.0%
!! TTGTTTGTATAAAATGTAAA+GGG + chr8_4:8456728-8456747 Msa1311600:three_prime_UTR 15.0%
!! CAATATATATGTGTTAAAAA+GGG + chr8_4:8456754-8456773 Msa1311600:three_prime_UTR 15.0%
!!! TGATCAAAGTTTTTTTCATT+TGG + chr8_4:8450773-8450792 Msa1311600:five_prime_UTR 20.0%
!!! TTGATATTTTTTTTTTGGAG+AGG + chr8_4:8450946-8450965 Msa1311600:intron 20.0%
!! AAATAATCATTATCATGATC+CGG + chr8_4:8451023-8451042 Msa1311600:intron 20.0%
!! AAATATATGTTACAGAAAAG+AGG - chr8_4:8451082-8451101 None:intergenic 20.0%
!! GATTGGAAAAAGAATAATAT+AGG - chr8_4:8451192-8451211 None:intergenic 20.0%
!!! GTTATGATAATATTGATGAT+TGG - chr8_4:8451209-8451228 None:intergenic 20.0%
!! ACGTAAATAAAAAATGATAG+TGG - chr8_4:8451362-8451381 None:intergenic 20.0%
!! AAAAAAAAATTATTCACTGC+GGG - chr8_4:8451758-8451777 None:intergenic 20.0%
!!! AAAGTTTTTTTAAGCTTCAA+TGG + chr8_4:8451786-8451805 Msa1311600:intron 20.0%
!! TAATGATATGTCATGTTATT+TGG - chr8_4:8451927-8451946 None:intergenic 20.0%
!!! ATTTTTTTGTTTTTGTTGAG+GGG - chr8_4:8451955-8451974 None:intergenic 20.0%
!!! CATTTTTTTGTTTTTGTTGA+GGG - chr8_4:8451956-8451975 None:intergenic 20.0%
!!! TCATTTTTTTGTTTTTGTTG+AGG - chr8_4:8451957-8451976 None:intergenic 20.0%
!! TACAACAATCAAAATAGAAT+TGG + chr8_4:8452193-8452212 Msa1311600:intron 20.0%
!! TAAATCATCTTATTATCAAC+TGG + chr8_4:8452421-8452440 Msa1311600:intron 20.0%
!! CAATCATATAAAGTTTATGT+GGG + chr8_4:8453224-8453243 Msa1311600:intron 20.0%
!! TAAATTCCATCAAATTATGT+GGG - chr8_4:8453251-8453270 None:intergenic 20.0%
!! ATAAATTCCATCAAATTATG+TGG - chr8_4:8453252-8453271 None:intergenic 20.0%
!! AACATTGTATTATGTTTATG+AGG + chr8_4:8453333-8453352 Msa1311600:intron 20.0%
!!! GTTTCAAAGATATTTTTCAA+AGG - chr8_4:8453413-8453432 None:intergenic 20.0%
!! ATTCTTTCATTTCAAAGATT+TGG - chr8_4:8453629-8453648 None:intergenic 20.0%
!!! AATAAGTTGAAAATAGCTTA+TGG - chr8_4:8453888-8453907 None:intergenic 20.0%
!!! CAGTATTAATTTTTTCTTTC+AGG + chr8_4:8454526-8454545 Msa1311600:intron 20.0%
!! ACATATTTATATGATACAAG+AGG + chr8_4:8454977-8454996 Msa1311600:intron 20.0%
!! TAGAACTAAAAGAAGTTTAT+TGG + chr8_4:8455009-8455028 Msa1311600:intron 20.0%
!! CTGTAGAAAATAATAACAAT+AGG - chr8_4:8455059-8455078 None:intergenic 20.0%
!!! TATTTTTACTATTTCGTAGA+CGG + chr8_4:8456085-8456104 Msa1311600:intron 20.0%
!! TTCATTGAAATATATTCTGA+TGG + chr8_4:8456239-8456258 Msa1311600:intron 20.0%
!! TTTATCAGAATCAACAAAAA+TGG - chr8_4:8456470-8456489 None:intergenic 20.0%
!! TAATGAACATCAAAAAGAAT+TGG + chr8_4:8456550-8456569 Msa1311600:CDS 20.0%
!! GCAATATATATGTGTTAAAA+AGG + chr8_4:8456753-8456772 Msa1311600:three_prime_UTR 20.0%
! ATGATATCAGAGAAAAATGA+GGG - chr8_4:8450849-8450868 None:intergenic 25.0%
!! ATAATTTGTAACACAGGTTA+TGG - chr8_4:8451142-8451161 None:intergenic 25.0%
! CAATATTATCATAACATCAC+AGG + chr8_4:8451214-8451233 Msa1311600:intron 25.0%
!! TGTATGTTTAAAGTTATACG+AGG + chr8_4:8451518-8451537 Msa1311600:intron 25.0%
!!! AGGCTTTGTCATATATTTTT+TGG - chr8_4:8451573-8451592 None:intergenic 25.0%
! AAAAATATATGACAAAGCCT+AGG + chr8_4:8451573-8451592 Msa1311600:intron 25.0%
! AAAAAAAATTATTCACTGCG+GGG - chr8_4:8451757-8451776 None:intergenic 25.0%
!! GAACTTTCATTGATAGTTAA+AGG - chr8_4:8451882-8451901 None:intergenic 25.0%
!!! TTTTTTTGTTTTTGTTGAGG+GGG - chr8_4:8451954-8451973 None:intergenic 25.0%
! AAAAATGACCTTTCTACATT+CGG + chr8_4:8451969-8451988 Msa1311600:intron 25.0%
!! TAGTATTAGGATTTTGTTAG+CGG - chr8_4:8452367-8452386 None:intergenic 25.0%
! ATTACAAACTATGCACAAAT+TGG - chr8_4:8452570-8452589 None:intergenic 25.0%
!! AGTTTGATAATTGTTTGATC+AGG + chr8_4:8452668-8452687 Msa1311600:intron 25.0%
! GATAGAGAAACTAACATAAA+AGG - chr8_4:8452921-8452940 None:intergenic 25.0%
! CCACATAAACTTTATATGAT+TGG - chr8_4:8453226-8453245 None:intergenic 25.0%
! CCAATCATATAAAGTTTATG+TGG + chr8_4:8453223-8453242 Msa1311600:intron 25.0%
! AAATTCCATCAAATTATGTG+GGG - chr8_4:8453250-8453269 None:intergenic 25.0%
!! TGTTTTATCGTTCTCTTTAA+TGG - chr8_4:8453287-8453306 None:intergenic 25.0%
!!! AGGTATTTTTAGGTGTTTAT+AGG - chr8_4:8453393-8453412 None:intergenic 25.0%
!!! ATATCTTTGAAACTTGAAAC+TGG + chr8_4:8453420-8453439 Msa1311600:intron 25.0%
! GTGTTACAAATCTATAAACA+AGG - chr8_4:8453489-8453508 None:intergenic 25.0%
! GATAAGGTTTATTACATGTT+TGG - chr8_4:8453818-8453837 None:intergenic 25.0%
!! GGAAATGTAATAAAAAGTGT+AGG - chr8_4:8453867-8453886 None:intergenic 25.0%
!!! CTTATTTCTATAAGCTCTTA+AGG + chr8_4:8453902-8453921 Msa1311600:intron 25.0%
! ATAATCTGTGAATCAATACT+AGG + chr8_4:8453991-8454010 Msa1311600:intron 25.0%
! ATCAATACTAGGATATGAAA+AGG + chr8_4:8454002-8454021 Msa1311600:intron 25.0%
! AAAAACCAAAGTTACCTTTA+TGG + chr8_4:8454039-8454058 Msa1311600:intron 25.0%
!! CAAGTATATCTCATTTTCAT+AGG + chr8_4:8454275-8454294 Msa1311600:intron 25.0%
! TAAAATTGATGAACTCAAAG+AGG + chr8_4:8454358-8454377 Msa1311600:CDS 25.0%
!!! ATACGTATATGATTAGCTTA+TGG + chr8_4:8454475-8454494 Msa1311600:intron 25.0%
! AAATTAATACTGCTCAGAAA+AGG - chr8_4:8454518-8454537 None:intergenic 25.0%
! TATTGTAAACTTAGCCATAT+TGG - chr8_4:8454657-8454676 None:intergenic 25.0%
! CTAAGAAAAATCCAATTAAC+TGG + chr8_4:8455338-8455357 Msa1311600:CDS 25.0%
! CAAAGTTACCTTATTGAAAA+GGG - chr8_4:8455598-8455617 None:intergenic 25.0%
! ACAAAGTTACCTTATTGAAA+AGG - chr8_4:8455599-8455618 None:intergenic 25.0%
! AATGAATGTATGATAGATTG+TGG - chr8_4:8455802-8455821 None:intergenic 25.0%
!!! TTTTTGTTGTTGTTATTTGC+AGG + chr8_4:8455917-8455936 Msa1311600:intron 25.0%
!!! TCTATTGTTCTGAAATTACT+TGG + chr8_4:8456018-8456037 Msa1311600:CDS 25.0%
!!! TAAACTATTTTTCTCTCATC+AGG + chr8_4:8456486-8456505 Msa1311600:intron 25.0%
! AAATTCTTCACTATGATCAA+TGG + chr8_4:8456594-8456613 Msa1311600:CDS 25.0%
! AATTCTTCACTATGATCAAT+GGG + chr8_4:8456595-8456614 Msa1311600:CDS 25.0%
! CATAAACAAAAATATGCTAG+TGG - chr8_4:8456698-8456717 None:intergenic 25.0%
! AAATTTATAACATCTTCGAG+TGG - chr8_4:8456854-8456873 None:intergenic 25.0%
! ATTTCATATAAGTTCTTCTC+TGG - chr8_4:8456879-8456898 None:intergenic 25.0%
GATGATATCAGAGAAAAATG+AGG - chr8_4:8450850-8450869 None:intergenic 30.0%
CTATTTCCTCCTACTAAAAA+AGG - chr8_4:8451268-8451287 None:intergenic 30.0%
AAAGGAGCAACTGAATTATT+CGG - chr8_4:8451864-8451883 None:intergenic 30.0%
! TTTTCCCCGATTTCAAAATA+CGG - chr8_4:8452053-8452072 None:intergenic 30.0%
GAAAAGTAGTTTAGATGAGT+CGG + chr8_4:8452272-8452291 Msa1311600:intron 30.0%
! AGTATTAGGATTTTGTTAGC+GGG - chr8_4:8452366-8452385 None:intergenic 30.0%
CAACTCTCATTGTTAGTATT+AGG - chr8_4:8452380-8452399 None:intergenic 30.0%
TTTGCATTGAAGAGAAAAGA+GGG + chr8_4:8452695-8452714 Msa1311600:CDS 30.0%
!!! AGCCTAGTGATTTTAAAACA+TGG + chr8_4:8452801-8452820 Msa1311600:CDS 30.0%
!!! GCCTAGTGATTTTAAAACAT+GGG + chr8_4:8452802-8452821 Msa1311600:CDS 30.0%
!!! TCCCATGTTTTAAAATCACT+AGG - chr8_4:8452806-8452825 None:intergenic 30.0%
!!! AGTGATTTTAAAACATGGGA+TGG + chr8_4:8452806-8452825 Msa1311600:CDS 30.0%
! TTAAAGAAAGAGAGTTTTGC+TGG + chr8_4:8453002-8453021 Msa1311600:intron 30.0%
TGAGGTCTGTTTACTTAATA+AGG + chr8_4:8453351-8453370 Msa1311600:intron 30.0%
! TGTTCATTTTCATAGACTTC+AGG - chr8_4:8453579-8453598 None:intergenic 30.0%
TGTCTGCAAATTTAAGTAAG+AGG - chr8_4:8453673-8453692 None:intergenic 30.0%
TTTGCAGACACTAAATATAG+TGG + chr8_4:8453683-8453702 Msa1311600:intron 30.0%
! ACATTCAGTCTTATGTGATA+AGG - chr8_4:8453834-8453853 None:intergenic 30.0%
TAAGCTCTTAAGGATAACTT+AGG + chr8_4:8453912-8453931 Msa1311600:intron 30.0%
GATTATGAAGAAATGCAAAG+TGG - chr8_4:8453977-8453996 None:intergenic 30.0%
ATCAACCATAAAGGTAACTT+TGG - chr8_4:8454047-8454066 None:intergenic 30.0%
TAGAGAGAAATCAACCATAA+AGG - chr8_4:8454056-8454075 None:intergenic 30.0%
! CCTCAGATTTAAGATATGTA+TGG - chr8_4:8454235-8454254 None:intergenic 30.0%
CCATACATATCTTAAATCTG+AGG + chr8_4:8454232-8454251 Msa1311600:intron 30.0%
! ATATCTTAAATCTGAGGTGT+TGG + chr8_4:8454238-8454257 Msa1311600:intron 30.0%
!! CATAGGTTTTAATATTGTGC+AGG + chr8_4:8454292-8454311 Msa1311600:intron 30.0%
!! GTTTTAATATTGTGCAGGTA+AGG + chr8_4:8454297-8454316 Msa1311600:intron 30.0%
ATCCTCATATGTAACCAATA+TGG + chr8_4:8454640-8454659 Msa1311600:intron 30.0%
CATGTGATATGTACTAATCA+AGG + chr8_4:8454914-8454933 Msa1311600:intron 30.0%
!!! ATGTTATTTTTGTGAGCAAG+AGG - chr8_4:8455166-8455185 None:intergenic 30.0%
! AGAACATTCTGCAATTTTTC+AGG + chr8_4:8455207-8455226 Msa1311600:CDS 30.0%
AGAGTTTATGCATATGATGA+TGG - chr8_4:8455243-8455262 None:intergenic 30.0%
TAATTGATCACTGATGCTTA+TGG + chr8_4:8455272-8455291 Msa1311600:intron 30.0%
! AAAATCCAATTAACTGGTTC+TGG + chr8_4:8455344-8455363 Msa1311600:CDS 30.0%
GATGAAAGACATTAAGCTTA+AGG + chr8_4:8455515-8455534 Msa1311600:CDS 30.0%
! ATGCATTAAAGCATCCTATT+TGG + chr8_4:8455538-8455557 Msa1311600:CDS 30.0%
TTTCTTCCTAAACTCCAAAT+AGG - chr8_4:8455555-8455574 None:intergenic 30.0%
!!! CTCTTTTTGTTTTTCCTTCT+CGG + chr8_4:8455704-8455723 Msa1311600:intron 30.0%
ACATTCATTAGTTGAAACAC+AGG + chr8_4:8455813-8455832 Msa1311600:CDS 30.0%
! GAAATATATTCTGATGGATC+AGG + chr8_4:8456245-8456264 Msa1311600:intron 30.0%
TTCTCAAAGCATAATTGCTA+AGG - chr8_4:8456440-8456459 None:intergenic 30.0%
TGAAGAATTTCTTCAAGTGT+AGG - chr8_4:8456584-8456603 None:intergenic 30.0%
CGTAATTCAGTGAAATTCAT+CGG - chr8_4:8456946-8456965 None:intergenic 30.0%
!! ACGATACATCACTTTGATTT+TGG + chr8_4:8456963-8456982 Msa1311600:three_prime_UTR 30.0%
TTTGGCTAATTCGTTGATCA+TGG + chr8_4:8450791-8450810 Msa1311600:exon 35.0%
!! AAAAACCTGGAAGTTTTGTG+GGG - chr8_4:8450887-8450906 None:intergenic 35.0%
!! GAAAAACCTGGAAGTTTTGT+GGG - chr8_4:8450888-8450907 None:intergenic 35.0%
! AGAAAAACCTGGAAGTTTTG+TGG - chr8_4:8450889-8450908 None:intergenic 35.0%
TCATCATGCACGTACATATA+TGG + chr8_4:8450923-8450942 Msa1311600:intron 35.0%
!!! CGAAGGTATCCTTTTTTAGT+AGG + chr8_4:8451256-8451275 Msa1311600:intron 35.0%
!!! AGGTATCCTTTTTTAGTAGG+AGG + chr8_4:8451259-8451278 Msa1311600:intron 35.0%
GTAGGAGGAAATAGAGAAAA+AGG + chr8_4:8451274-8451293 Msa1311600:intron 35.0%
AGGGTAACAGGTAAGTATTT+GGG - chr8_4:8451656-8451675 None:intergenic 35.0%
TAGGGTAACAGGTAAGTATT+TGG - chr8_4:8451657-8451676 None:intergenic 35.0%
! TTTAATTTCTCATCCCCGTT+GGG - chr8_4:8451686-8451705 None:intergenic 35.0%
! ATTTAATTTCTCATCCCCGT+TGG - chr8_4:8451687-8451706 None:intergenic 35.0%
AGCAACTGAATTATTCGGTA+AGG - chr8_4:8451859-8451878 None:intergenic 35.0%
AACCTTAACCGAATGTAGAA+AGG - chr8_4:8451980-8451999 None:intergenic 35.0%
TTCTACATTCGGTTAAGGTT+TGG + chr8_4:8451980-8451999 Msa1311600:intron 35.0%
ATTCGGTTAAGGTTTGGATA+TGG + chr8_4:8451986-8452005 Msa1311600:intron 35.0%
TTCGGTTAAGGTTTGGATAT+GGG + chr8_4:8451987-8452006 Msa1311600:intron 35.0%
TTAAGGTTTGGATATGGGTT+CGG + chr8_4:8451992-8452011 Msa1311600:intron 35.0%
TTTCCCCGATTTCAAAATAC+GGG - chr8_4:8452052-8452071 None:intergenic 35.0%
TTTAGATGAGTCGGATTTCA+TGG + chr8_4:8452281-8452300 Msa1311600:intron 35.0%
AATCCCTATTCTGTCTTTAG+TGG - chr8_4:8452308-8452327 None:intergenic 35.0%
CTTTGCATTGAAGAGAAAAG+AGG + chr8_4:8452694-8452713 Msa1311600:CDS 35.0%
!!! GTTTTAAAATCACTAGGCTG+AGG - chr8_4:8452800-8452819 None:intergenic 35.0%
!! GTGTTGTTAGTCTTGTTTCT+TGG - chr8_4:8453164-8453183 None:intergenic 35.0%
! GACTAACAACACATTTTTCG+AGG + chr8_4:8453172-8453191 Msa1311600:intron 35.0%
AATGAACACTCTAAGTTCTC+AGG + chr8_4:8453591-8453610 Msa1311600:intron 35.0%
! TCCAGAAAGATTTAGAGTTG+TGG + chr8_4:8453713-8453732 Msa1311600:CDS 35.0%
! CCAGAAAGATTTAGAGTTGT+GGG + chr8_4:8453714-8453733 Msa1311600:CDS 35.0%
! CAGAAAGATTTAGAGTTGTG+GGG + chr8_4:8453715-8453734 Msa1311600:CDS 35.0%
! ACATGTTTGGAGTACATGTT+TGG - chr8_4:8453805-8453824 None:intergenic 35.0%
AAGAAATGCAAAGTGGAAGA+TGG - chr8_4:8453970-8453989 None:intergenic 35.0%
GTAATGTGTTAGTGTCATGT+CGG + chr8_4:8454189-8454208 Msa1311600:intron 35.0%
!! CGTATATGATTAGCTTATGG+AGG + chr8_4:8454478-8454497 Msa1311600:intron 35.0%
AACTATTCCTGTAACTACTG+TGG - chr8_4:8454573-8454592 None:intergenic 35.0%
ACAGTAGTTACAGGAATAGT+TGG + chr8_4:8454572-8454591 Msa1311600:CDS 35.0%
! AGCCATATTGGTTACATATG+AGG - chr8_4:8454645-8454664 None:intergenic 35.0%
GTTAATGCAGTTCAAAGAGA+AGG + chr8_4:8454698-8454717 Msa1311600:intron 35.0%
TACGTTCAGCAGATGATTAA+TGG + chr8_4:8454735-8454754 Msa1311600:intron 35.0%
!! AGTTAATGAGTTTTGACGTC+TGG - chr8_4:8454766-8454785 None:intergenic 35.0%
AACAAAGAGACAATGATTGC+TGG + chr8_4:8455124-8455143 Msa1311600:CDS 35.0%
! ATTTTTCTTAGTGCACCCTT+TGG - chr8_4:8455329-8455348 None:intergenic 35.0%
! CGTTTGTCGATTGATAATTC+AGG - chr8_4:8455452-8455471 None:intergenic 35.0%
TCAATCGACAAACGCTAATA+TGG + chr8_4:8455458-8455477 Msa1311600:intron 35.0%
CCATTCTCTGTCAATAATAC+CGG - chr8_4:8455484-8455503 None:intergenic 35.0%
! AAGCATCCTATTTGGAGTTT+AGG + chr8_4:8455546-8455565 Msa1311600:CDS 35.0%
! TTCTGCTACCCTTTTCAATA+AGG + chr8_4:8455587-8455606 Msa1311600:CDS 35.0%
ATTGAAGCACACTACTTGTT+TGG + chr8_4:8455742-8455761 Msa1311600:CDS 35.0%
TTCTTCTGTTATTGCACAGT+TGG + chr8_4:8455941-8455960 Msa1311600:CDS 35.0%
TCTTCTGTTATTGCACAGTT+GGG + chr8_4:8455942-8455961 Msa1311600:CDS 35.0%
CATGACAAAGTATAAAGGAG+TGG - chr8_4:8455987-8456006 None:intergenic 35.0%
CACTCCTTTATACTTTGTCA+TGG + chr8_4:8455985-8456004 Msa1311600:CDS 35.0%
TCAGAACAATAGACTCTTTC+TGG - chr8_4:8456011-8456030 None:intergenic 35.0%
CAAGGAGAATTGATTGTACT+TGG - chr8_4:8456060-8456079 None:intergenic 35.0%
ACTTGTAAGACTGTTTGAGA+GGG + chr8_4:8456181-8456200 Msa1311600:intron 35.0%
! ATATTCTGATGGATCAGGTA+TGG + chr8_4:8456250-8456269 Msa1311600:intron 35.0%
!! AAAACCTGGAAGTTTTGTGG+GGG - chr8_4:8450886-8450905 None:intergenic 40.0%
AAAGACAGGAGAGAAAAACC+TGG - chr8_4:8450900-8450919 None:intergenic 40.0%
ACTTCTTCCTATAAGCTGCA+TGG + chr8_4:8451434-8451453 Msa1311600:intron 40.0%
TCTCTATCCATGCAGCTTAT+AGG - chr8_4:8451444-8451463 None:intergenic 40.0%
AGAGATATGCTACCTGAGTA+CGG + chr8_4:8451459-8451478 Msa1311600:intron 40.0%
TATATGACAAAGCCTAGGCA+TGG + chr8_4:8451578-8451597 Msa1311600:intron 40.0%
AGGTAAGTATTTGGGAGTAG+GGG - chr8_4:8451648-8451667 None:intergenic 40.0%
CAGGTAAGTATTTGGGAGTA+GGG - chr8_4:8451649-8451668 None:intergenic 40.0%
ACAGGTAAGTATTTGGGAGT+AGG - chr8_4:8451650-8451669 None:intergenic 40.0%
AAAATTATTCACTGCGGGGA+CGG - chr8_4:8451753-8451772 None:intergenic 40.0%
CTAAAATGCGCGCAAATTGT+TGG - chr8_4:8451831-8451850 None:intergenic 40.0%
GACCTTTCTACATTCGGTTA+AGG + chr8_4:8451975-8451994 Msa1311600:intron 40.0%
TAAGGTTTGGATATGGGTTC+GGG + chr8_4:8451993-8452012 Msa1311600:intron 40.0%
CGATTTCAAAATACGGGTAC+GGG - chr8_4:8452046-8452065 None:intergenic 40.0%
CCGATTTCAAAATACGGGTA+CGG - chr8_4:8452047-8452066 None:intergenic 40.0%
!!! CCGTACCCGTATTTTGAAAT+CGG + chr8_4:8452044-8452063 Msa1311600:intron 40.0%
!!! CGTACCCGTATTTTGAAATC+GGG + chr8_4:8452045-8452064 Msa1311600:intron 40.0%
!!! GTACCCGTATTTTGAAATCG+GGG + chr8_4:8452046-8452065 Msa1311600:intron 40.0%
ATACCCAAACCCAGTCAAAT+CGG + chr8_4:8452082-8452101 Msa1311600:intron 40.0%
!! GAACGACAGTTTGTTAGACA+AGG - chr8_4:8452167-8452186 None:intergenic 40.0%
GTCTAACAAACTGTCGTTCA+TGG + chr8_4:8452168-8452187 Msa1311600:intron 40.0%
TGGTCCACTAAAGACAGAAT+AGG + chr8_4:8452301-8452320 Msa1311600:intron 40.0%
GGTCCACTAAAGACAGAATA+GGG + chr8_4:8452302-8452321 Msa1311600:intron 40.0%
! TTAGGCTCAACTGGTTCAAT+TGG + chr8_4:8452848-8452867 Msa1311600:CDS 40.0%
! AACTGGTTCAATTGGAACTC+AGG + chr8_4:8452856-8452875 Msa1311600:CDS 40.0%
CCCACAACTCTAAATCTTTC+TGG - chr8_4:8453717-8453736 None:intergenic 40.0%
TGTTACTCTTCTTGCTGAAC+AGG + chr8_4:8453755-8453774 Msa1311600:CDS 40.0%
! TGGAGTACATGTTTGGAGTA+AGG - chr8_4:8453798-8453817 None:intergenic 40.0%
ATCAGTGCTTCATAGCTCAA+AGG - chr8_4:8454094-8454113 None:intergenic 40.0%
! TCTCTAAGAGCTACTAACTC+AGG - chr8_4:8454332-8454351 None:intergenic 40.0%
TGATGAACTCAAAGAGGCTT+TGG + chr8_4:8454364-8454383 Msa1311600:CDS 40.0%
ACAAACCTGAAATCATCCCT+GGG + chr8_4:8454399-8454418 Msa1311600:CDS 40.0%
! TTTTCTACAGCCAACAGTTG+CGG + chr8_4:8455069-8455088 Msa1311600:intron 40.0%
AGCAGGAAAAGACATAGCAT+TGG + chr8_4:8455099-8455118 Msa1311600:CDS 40.0%
AAAGAGACAATGATTGCTGG+AGG + chr8_4:8455127-8455146 Msa1311600:CDS 40.0%
TTCTCTTCACAGTGTATCCA+AGG + chr8_4:8455299-8455318 Msa1311600:intron 40.0%
TGTATCCAAGGTTTGCCAAA+GGG + chr8_4:8455311-8455330 Msa1311600:CDS 40.0%
!! ATCCAATTAACTGGTTCTGG+AGG + chr8_4:8455347-8455366 Msa1311600:CDS 40.0%
CCGGTATTATTGACAGAGAA+TGG + chr8_4:8455481-8455500 Msa1311600:intron 40.0%
ATGTCTTTCATCTTCTCAGC+AGG - chr8_4:8455507-8455526 None:intergenic 40.0%
!!! TTTTGTTTTTCCTTCTCGGC+AGG + chr8_4:8455708-8455727 Msa1311600:intron 40.0%
!! TTTGTTTTTCCTTCTCGGCA+GGG + chr8_4:8455709-8455728 Msa1311600:intron 40.0%
CTGGCCATGACAAAGTATAA+AGG - chr8_4:8455992-8456011 None:intergenic 40.0%
CACTTGTAAGACTGTTTGAG+AGG + chr8_4:8456180-8456199 Msa1311600:intron 40.0%
CTTGTAAGACTGTTTGAGAG+GGG + chr8_4:8456182-8456201 Msa1311600:intron 40.0%
GATGGAAACTTCTTAGTGTC+TGG - chr8_4:8456295-8456314 None:intergenic 40.0%
GCATAGCAAAGATTCACTGA+TGG - chr8_4:8456313-8456332 None:intergenic 40.0%
TTGAATCTCATGTAGCTGTG+TGG + chr8_4:8456658-8456677 Msa1311600:exon 40.0%
CGAGTGGAAGAACTACATAT+TGG - chr8_4:8456838-8456857 None:intergenic 40.0%
! GTTTTGTGGGGGTGATAACT+GGG - chr8_4:8450875-8450894 None:intergenic 45.0%
!! AGTTTTGTGGGGGTGATAAC+TGG - chr8_4:8450876-8450895 None:intergenic 45.0%
GTGCATGATGAGACAAAGAC+AGG - chr8_4:8450914-8450933 None:intergenic 45.0%
TGCATCTTGTATCCGTACTC+AGG - chr8_4:8451474-8451493 None:intergenic 45.0%
AGTATTTGGGAGTAGGGGAT+GGG - chr8_4:8451643-8451662 None:intergenic 45.0%
AAGTATTTGGGAGTAGGGGA+TGG - chr8_4:8451644-8451663 None:intergenic 45.0%
AAATTATTCACTGCGGGGAC+GGG - chr8_4:8451752-8451771 None:intergenic 45.0%
AAGGTTTGGATATGGGTTCG+GGG + chr8_4:8451994-8452013 Msa1311600:intron 45.0%
TTCAAAATACGGGTACGGGA+CGG - chr8_4:8452042-8452061 None:intergenic 45.0%
TACCCAAACCCAGTCAAATC+GGG + chr8_4:8452083-8452102 Msa1311600:intron 45.0%
AAAACCCGTCAAATCAGGGT+TGG + chr8_4:8452107-8452126 Msa1311600:intron 45.0%
! CAAACCAACCCTGATTTGAC+GGG - chr8_4:8452114-8452133 None:intergenic 45.0%
! CCAAACCAACCCTGATTTGA+CGG - chr8_4:8452115-8452134 None:intergenic 45.0%
!! CGTCAAATCAGGGTTGGTTT+GGG + chr8_4:8452113-8452132 Msa1311600:intron 45.0%
!! CCTAAGACAGAGATGGGTTT+TGG - chr8_4:8452833-8452852 None:intergenic 45.0%
CCAAAACCCATCTCTGTCTT+AGG + chr8_4:8452830-8452849 Msa1311600:CDS 45.0%
GTTGAGCCTAAGACAGAGAT+GGG - chr8_4:8452839-8452858 None:intergenic 45.0%
AGTTGAGCCTAAGACAGAGA+TGG - chr8_4:8452840-8452859 None:intergenic 45.0%
ATCTCTGTCTTAGGCTCAAC+TGG + chr8_4:8452839-8452858 Msa1311600:CDS 45.0%
CACAAACCTGAAATCATCCC+TGG + chr8_4:8454398-8454417 Msa1311600:CDS 45.0%
CAAACCTGAAATCATCCCTG+GGG + chr8_4:8454400-8454419 Msa1311600:CDS 45.0%
ACAGGAATAGTTGGTTGTGC+AGG + chr8_4:8454581-8454600 Msa1311600:CDS 45.0%
AGTTGGTTGTGCAGGATTGA+AGG + chr8_4:8454589-8454608 Msa1311600:CDS 45.0%
AGTGACTACGTACACGTTCT+TGG - chr8_4:8454801-8454820 None:intergenic 45.0%
! GCAGAATGTTCTGAATCAGC+AGG - chr8_4:8455199-8455218 None:intergenic 45.0%
GTGTATCCAAGGTTTGCCAA+AGG + chr8_4:8455310-8455329 Msa1311600:intron 45.0%
CACCTCCAGAACCAGTTAAT+TGG - chr8_4:8455352-8455371 None:intergenic 45.0%
TCGACAAACGCTAATATGGC+CGG + chr8_4:8455462-8455481 Msa1311600:intron 45.0%
AGTTGGGATTACCTGACATG+CGG + chr8_4:8455958-8455977 Msa1311600:CDS 45.0%
TACTTGGTAAGATCGAGTCG+AGG - chr8_4:8456044-8456063 None:intergenic 45.0%
! GTGAATCTTTGCTATGCTGC+CGG + chr8_4:8456316-8456335 Msa1311600:CDS 45.0%
GTTTGCAGCACTAAGAACTC+CGG - chr8_4:8456362-8456381 None:intergenic 45.0%
GTAGCTGTGTGGTCAATTGT+TGG + chr8_4:8456669-8456688 Msa1311600:three_prime_UTR 45.0%
!!! AATTATTTTATTGAATTAAA+TGG + chr8_4:8451156-8451175 Msa1311600:intron 5.0%
!!! TATATTGTATATATTTTTAA+GGG - chr8_4:8452541-8452560 None:intergenic 5.0%
!!! TTATATTGTATATATTTTTA+AGG - chr8_4:8452542-8452561 None:intergenic 5.0%
ATGAGGGCTTCACTTGAGCT+GGG - chr8_4:8450833-8450852 None:intergenic 50.0%
AATGAGGGCTTCACTTGAGC+TGG - chr8_4:8450834-8450853 None:intergenic 50.0%
ATCACCCCCACAAAACTTCC+AGG + chr8_4:8450879-8450898 Msa1311600:CDS 50.0%
ACAAAGCCTAGGCATGGCAA+TGG + chr8_4:8451584-8451603 Msa1311600:intron 50.0%
CAAAGCCTAGGCATGGCAAT+GGG + chr8_4:8451585-8451604 Msa1311600:intron 50.0%
AAAGCCTAGGCATGGCAATG+GGG + chr8_4:8451586-8451605 Msa1311600:intron 50.0%
GTATTTGGGAGTAGGGGATG+GGG - chr8_4:8451642-8451661 None:intergenic 50.0%
TTGGGTATGGGTAGGGTAAC+AGG - chr8_4:8451668-8451687 None:intergenic 50.0%
GTTACCCTACCCATACCCAA+CGG + chr8_4:8451668-8451687 Msa1311600:intron 50.0%
TTACCCTACCCATACCCAAC+GGG + chr8_4:8451669-8451688 Msa1311600:intron 50.0%
TTCTCATCCCCGTTGGGTAT+GGG - chr8_4:8451680-8451699 None:intergenic 50.0%
TTTCTCATCCCCGTTGGGTA+TGG - chr8_4:8451681-8451700 None:intergenic 50.0%
AATCTCATCCCCGTCCTCAA+TGG + chr8_4:8451704-8451723 Msa1311600:intron 50.0%
ATCTCATCCCCGTCCTCAAT+GGG + chr8_4:8451705-8451724 Msa1311600:intron 50.0%
AATTATTCACTGCGGGGACG+GGG - chr8_4:8451751-8451770 None:intergenic 50.0%
TCAAAATACGGGTACGGGAC+GGG - chr8_4:8452041-8452060 None:intergenic 50.0%
ACCCAAACCCAGTCAAATCG+GGG + chr8_4:8452084-8452103 Msa1311600:intron 50.0%
! TCCCCGATTTGACTGGGTTT+GGG - chr8_4:8452088-8452107 None:intergenic 50.0%
! TTCCCCGATTTGACTGGGTT+TGG - chr8_4:8452089-8452108 None:intergenic 50.0%
!! GGGTTTTCCCCGATTTGACT+GGG - chr8_4:8452094-8452113 None:intergenic 50.0%
GGGGAAAACCCGTCAAATCA+GGG + chr8_4:8452103-8452122 Msa1311600:intron 50.0%
!! CCGTCAAATCAGGGTTGGTT+TGG + chr8_4:8452112-8452131 Msa1311600:intron 50.0%
!! CAAATCAGGGTTGGTTTGGG+CGG + chr8_4:8452116-8452135 Msa1311600:intron 50.0%
!! AAATCAGGGTTGGTTTGGGC+GGG + chr8_4:8452117-8452136 Msa1311600:intron 50.0%
GCAACAAAACCCGTGCCTAT+GGG - chr8_4:8452145-8452164 None:intergenic 50.0%
GTGGGCCCCACATAATTTGA+TGG + chr8_4:8453242-8453261 Msa1311600:intron 50.0%
TGTCGGACACTGACACATGT+TGG + chr8_4:8454206-8454225 Msa1311600:intron 50.0%
!! CTGAGGTGTTGGTACTACGT+CGG + chr8_4:8454249-8454268 Msa1311600:intron 50.0%
! GAACTCAAAGAGGCTTTGGC+TGG + chr8_4:8454368-8454387 Msa1311600:CDS 50.0%
TAACTACTGTGGCCGCATCA+GGG - chr8_4:8454562-8454581 None:intergenic 50.0%
ACTTCTAAACCCTGCCGAGA+AGG - chr8_4:8455721-8455740 None:intergenic 50.0%
AGCACTAAGAACTCCGGTCA+TGG - chr8_4:8456356-8456375 None:intergenic 50.0%
TGCTGCAAACGAGATAGCTG+TGG + chr8_4:8456372-8456391 Msa1311600:CDS 50.0%
TGGGCAAGACAATATGCTGC+TGG + chr8_4:8456614-8456633 Msa1311600:CDS 50.0%
TGAGGGCTTCACTTGAGCTG+GGG - chr8_4:8450832-8450851 None:intergenic 55.0%
TACCCTACCCATACCCAACG+GGG + chr8_4:8451670-8451689 Msa1311600:intron 55.0%
ATCCCCGTTGGGTATGGGTA+GGG - chr8_4:8451675-8451694 None:intergenic 55.0%
ATACCCGGACCCATTGAGGA+CGG - chr8_4:8451717-8451736 None:intergenic 55.0%
GTTTGGATATGGGTTCGGGG+TGG + chr8_4:8451997-8452016 Msa1311600:intron 55.0%
!! CGGGTTTTCCCCGATTTGAC+TGG - chr8_4:8452095-8452114 None:intergenic 55.0%
CGGGGAAAACCCGTCAAATC+AGG + chr8_4:8452102-8452121 Msa1311600:intron 55.0%
GGCAACAAAACCCGTGCCTA+TGG - chr8_4:8452146-8452165 None:intergenic 55.0%
ATAGCTGTTCCTGGCCAAGC+TGG - chr8_4:8452776-8452795 None:intergenic 55.0%
GGCTGAGGAATAGCTGTTCC+TGG - chr8_4:8452785-8452804 None:intergenic 55.0%
TGCTCCCCAGGGATGATTTC+AGG - chr8_4:8454407-8454426 None:intergenic 55.0%
GAAATCATCCCTGGGGAGCA+AGG + chr8_4:8454407-8454426 Msa1311600:CDS 55.0%
CAATGACTCCTTGCTCCCCA+GGG - chr8_4:8454418-8454437 None:intergenic 55.0%
TCAATGACTCCTTGCTCCCC+AGG - chr8_4:8454419-8454438 None:intergenic 55.0%
TGGGGAGCAAGGAGTCATTG+AGG + chr8_4:8454418-8454437 Msa1311600:CDS 55.0%
GTAACTACTGTGGCCGCATC+AGG - chr8_4:8454563-8454582 None:intergenic 55.0%
GATGCGGCCACAGTAGTTAC+AGG + chr8_4:8454563-8454582 Msa1311600:CDS 55.0%
GCTTCAATCGCCGCAACTGT+TGG - chr8_4:8455082-8455101 None:intergenic 55.0%
ACAGTTGCGGCGATTGAAGC+AGG + chr8_4:8455082-8455101 Msa1311600:CDS 55.0%
GTGCACCCTTTGGCAAACCT+TGG - chr8_4:8455319-8455338 None:intergenic 55.0%
!! CTGGTTCTGGAGGTGCTTTC+AGG + chr8_4:8455357-8455376 Msa1311600:CDS 55.0%
GGCTTCACTTGAGCTGGGGA+GGG - chr8_4:8450828-8450847 None:intergenic 60.0%
CCTAGGCATGGCAATGGGGT+GGG + chr8_4:8451590-8451609 Msa1311600:intron 60.0%
CTAGGCATGGCAATGGGGTG+GGG + chr8_4:8451591-8451610 Msa1311600:intron 60.0%
TGGGAGTAGGGGATGGGGAT+GGG - chr8_4:8451637-8451656 None:intergenic 60.0%
TTGGGAGTAGGGGATGGGGA+TGG - chr8_4:8451638-8451657 None:intergenic 60.0%
CATCCCCGTTGGGTATGGGT+AGG - chr8_4:8451676-8451695 None:intergenic 60.0%
ATCCCCGTCCTCAATGGGTC+CGG + chr8_4:8451710-8451729 Msa1311600:intron 60.0%
TACCCGGACCCATTGAGGAC+GGG - chr8_4:8451716-8451735 None:intergenic 60.0%
GGGAATACCCGGACCCATTG+AGG - chr8_4:8451721-8451740 None:intergenic 60.0%
TACGGGTACGGGACGGGTAA+CGG - chr8_4:8452035-8452054 None:intergenic 60.0%
! TGGTTTGGGCGGGTACCCAT+AGG + chr8_4:8452127-8452146 Msa1311600:intron 60.0%
CACACTCACCACCACCAGCT+TGG + chr8_4:8452759-8452778 Msa1311600:CDS 60.0%
AGAGTTGTGGGGCTTGCAGC+TGG + chr8_4:8453726-8453745 Msa1311600:CDS 60.0%
GGTTGCTCGTCACCCTGATG+CGG + chr8_4:8454547-8454566 Msa1311600:intron 60.0%
AGGAGTGGCAACCGCATGTC+AGG - chr8_4:8455972-8455991 None:intergenic 60.0%
GGGCTTCACTTGAGCTGGGG+AGG - chr8_4:8450829-8450848 None:intergenic 65.0%
GCCTAGGCATGGCAATGGGG+TGG + chr8_4:8451589-8451608 Msa1311600:intron 65.0%
CCCACCCCATTGCCATGCCT+AGG - chr8_4:8451593-8451612 None:intergenic 65.0%
CATGGCAATGGGGTGGGGTG+CGG + chr8_4:8451596-8451615 Msa1311600:intron 65.0%
GTAGGGGATGGGGATGGGGA+TGG - chr8_4:8451632-8451651 None:intergenic 65.0%
GGGAGTAGGGGATGGGGATG+GGG - chr8_4:8451636-8451655 None:intergenic 65.0%
TCCCCGTCCTCAATGGGTCC+GGG + chr8_4:8451711-8451730 Msa1311600:intron 65.0%
ACCCGGACCCATTGAGGACG+GGG - chr8_4:8451715-8451734 None:intergenic 65.0%
TTCACTGCGGGGACGGGGAT+GGG - chr8_4:8451746-8451765 None:intergenic 65.0%
ATTCACTGCGGGGACGGGGA+TGG - chr8_4:8451747-8451766 None:intergenic 65.0%
ACGGGTACGGGACGGGTAAC+GGG - chr8_4:8452034-8452053 None:intergenic 65.0%
TGGGCGGGTACCCATAGGCA+CGG + chr8_4:8452132-8452151 Msa1311600:intron 65.0%
TCACCACCACCAGCTTGGCC+AGG + chr8_4:8452764-8452783 Msa1311600:CDS 65.0%
GTTCCTGGCCAAGCTGGTGG+TGG - chr8_4:8452770-8452789 None:intergenic 65.0%
GCTGTTCCTGGCCAAGCTGG+TGG - chr8_4:8452773-8452792 None:intergenic 65.0%
TGCTATGCTGCCGGACGTGC+TGG + chr8_4:8456325-8456344 Msa1311600:CDS 65.0%
TATGCTGCCGGACGTGCTGG+AGG + chr8_4:8456328-8456347 Msa1311600:CDS 65.0%
CATGGTGCCTCCAGCACGTC+CGG - chr8_4:8456338-8456357 None:intergenic 65.0%
!! CGTGCTGGAGGCACCATGAC+CGG + chr8_4:8456340-8456359 Msa1311600:CDS 65.0%
GCAATGGGGTGGGGTGCGGA+CGG + chr8_4:8451600-8451619 Msa1311600:intron 70.0%
CAATGGGGTGGGGTGCGGAC+GGG + chr8_4:8451601-8451620 Msa1311600:intron 70.0%
GGGGATGGGGCGGGAATACC+CGG - chr8_4:8451732-8451751 None:intergenic 70.0%
TCACTGCGGGGACGGGGATG+GGG - chr8_4:8451745-8451764 None:intergenic 70.0%
CGGGTACGGGACGGGTAACG+GGG - chr8_4:8452033-8452052 None:intergenic 70.0%
GGGCGGGTACCCATAGGCAC+GGG + chr8_4:8452133-8452152 Msa1311600:intron 70.0%
! TGCGGGGACGGGGATGGGGC+GGG - chr8_4:8451741-8451760 None:intergenic 80.0%
! CTGCGGGGACGGGGATGGGG+CGG - chr8_4:8451742-8451761 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 8450735 8457061 8450735 ID=Msa1311600;Name=Msa1311600
chr8_4 mRNA 8450735 8457061 8450735 ID=Msa1311600-mRNA-1;Parent=Msa1311600;Name=Msa1311600-mRNA-1;_AED=0.07;_eAED=0.07;_QI=75|1|1|1|1|1|12|400|470
chr8_4 exon 8450735 8450900 8450735 ID=Msa1311600-mRNA-1:exon:3109;Parent=Msa1311600-mRNA-1
chr8_4 exon 8452690 8452877 8452690 ID=Msa1311600-mRNA-1:exon:3110;Parent=Msa1311600-mRNA-1
chr8_4 exon 8453690 8453776 8453690 ID=Msa1311600-mRNA-1:exon:3111;Parent=Msa1311600-mRNA-1
chr8_4 exon 8454314 8454439 8454314 ID=Msa1311600-mRNA-1:exon:3112;Parent=Msa1311600-mRNA-1
chr8_4 exon 8454548 8454610 8454548 ID=Msa1311600-mRNA-1:exon:3113;Parent=Msa1311600-mRNA-1
chr8_4 exon 8455079 8455228 8455079 ID=Msa1311600-mRNA-1:exon:3114;Parent=Msa1311600-mRNA-1
chr8_4 exon 8455311 8455378 8455311 ID=Msa1311600-mRNA-1:exon:3115;Parent=Msa1311600-mRNA-1
chr8_4 exon 8455497 8455608 8455497 ID=Msa1311600-mRNA-1:exon:3116;Parent=Msa1311600-mRNA-1
chr8_4 exon 8455730 8455834 8455730 ID=Msa1311600-mRNA-1:exon:3117;Parent=Msa1311600-mRNA-1
chr8_4 exon 8455939 8456060 8455939 ID=Msa1311600-mRNA-1:exon:3118;Parent=Msa1311600-mRNA-1
chr8_4 exon 8456267 8456413 8456267 ID=Msa1311600-mRNA-1:exon:3119;Parent=Msa1311600-mRNA-1
chr8_4 exon 8456508 8457061 8456508 ID=Msa1311600-mRNA-1:exon:3120;Parent=Msa1311600-mRNA-1
chr8_4 five_prime_UTR 8450735 8450809 8450735 ID=Msa1311600-mRNA-1:five_prime_utr;Parent=Msa1311600-mRNA-1
chr8_4 CDS 8450810 8450900 8450810 ID=Msa1311600-mRNA-1:cds;Parent=Msa1311600-mRNA-1
chr8_4 CDS 8452690 8452877 8452690 ID=Msa1311600-mRNA-1:cds;Parent=Msa1311600-mRNA-1
chr8_4 CDS 8453690 8453776 8453690 ID=Msa1311600-mRNA-1:cds;Parent=Msa1311600-mRNA-1
chr8_4 CDS 8454314 8454439 8454314 ID=Msa1311600-mRNA-1:cds;Parent=Msa1311600-mRNA-1
chr8_4 CDS 8454548 8454610 8454548 ID=Msa1311600-mRNA-1:cds;Parent=Msa1311600-mRNA-1
chr8_4 CDS 8455079 8455228 8455079 ID=Msa1311600-mRNA-1:cds;Parent=Msa1311600-mRNA-1
chr8_4 CDS 8455311 8455378 8455311 ID=Msa1311600-mRNA-1:cds;Parent=Msa1311600-mRNA-1
chr8_4 CDS 8455497 8455608 8455497 ID=Msa1311600-mRNA-1:cds;Parent=Msa1311600-mRNA-1
chr8_4 CDS 8455730 8455834 8455730 ID=Msa1311600-mRNA-1:cds;Parent=Msa1311600-mRNA-1
chr8_4 CDS 8455939 8456060 8455939 ID=Msa1311600-mRNA-1:cds;Parent=Msa1311600-mRNA-1
chr8_4 CDS 8456267 8456413 8456267 ID=Msa1311600-mRNA-1:cds;Parent=Msa1311600-mRNA-1
chr8_4 CDS 8456508 8456661 8456508 ID=Msa1311600-mRNA-1:cds;Parent=Msa1311600-mRNA-1
chr8_4 three_prime_UTR 8456662 8457061 8456662 ID=Msa1311600-mRNA-1:three_prime_utr;Parent=Msa1311600-mRNA-1
Gene Sequence

>Msa1311600

ATGGCTTTGAATTTGCCCTCCCCAGCTCAAGTGAAGCCCTCATTTTTCTCTGATATCATCAACCCAGTTATCACCCCCACAAAACTTCCAGGTAGCTTTGCATTGAAGAGAAAAGAGGGTGACACAAAAGTAGTAAAGAGAAGAGTTTATTGCTCTGCAGCACACTCACCACCACCAGCTTGGCCAGGAACAGCTATTCCTCAGCCTAGTGATTTTAAAACATGGGATGGACCAAAACCCATCTCTGTCTTAGGCTCAACTGGTTCAATTGGAACTCAGACACTAAATATAGTGGCAGAGTTTCCAGAAAGATTTAGAGTTGTGGGGCTTGCAGCTGGTTCAAATGTTACTCTTCTTGCTGAACAGGTAAGGATATTTAAGCCTGAGTTAGTAGCTCTTAGAGACGAGTCTAAAATTGATGAACTCAAAGAGGCTTTGGCTGGTATTGATCACAAACCTGAAATCATCCCTGGGGAGCAAGGAGTCATTGAGGTTGCTCGTCACCCTGATGCGGCCACAGTAGTTACAGGAATAGTTGGTTGTGCAGGATTGAAGCCAACAGTTGCGGCGATTGAAGCAGGAAAAGACATAGCATTGGCAAACAAAGAGACAATGATTGCTGGAGGCGCTTTTGTTCTTCCTCTTGCTCACAAAAATAACATCAAAATTCTTCCTGCTGATTCAGAACATTCTGCAATTTTTCAGTGTATCCAAGGTTTGCCAAAGGGTGCACTAAGAAAAATCCAATTAACTGGTTCTGGAGGTGCTTTCAGAGAATGGCCTGCTGAGAAGATGAAAGACATTAAGCTTAAGGATGCATTAAAGCATCCTATTTGGAGTTTAGGAAGAAAGATAACTATAGATTCTGCTACCCTTTTCAATAAGGGTTTAGAAGTAATTGAAGCACACTACTTGTTTGGAGCAGAATATGATGATATTGAGATTGTTATTCATCCACAATCTATCATACATTCATTAGTTGAAACACAGGATTCTTCTGTTATTGCACAGTTGGGATTACCTGACATGCGGTTGCCACTCCTTTATACTTTGTCATGGCCAGAAAGAGTCTATTGTTCTGAAATTACTTGGCCTCGACTCGATCTTACCAAGTATGGTTCTCTAACATTTCAAGCTCCAGACACTAAGAAGTTTCCATCAGTGAATCTTTGCTATGCTGCCGGACGTGCTGGAGGCACCATGACCGGAGTTCTTAGTGCTGCAAACGAGATAGCTGTGGAACTGTTTGTTGCAGAAAAGATTAGCTATCTAGATATTTTCAAGATTGCAGAGCTAACATGTAATGAACATCAAAAAGAATTGGTAACATCTCCTACACTTGAAGAAATTCTTCACTATGATCAATGGGCAAGACAATATGCTGCTGGTTTGCAAAAAGCTTTAAGTGTTTGA

Protein sequence

>Msa1311600

MALNLPSPAQVKPSFFSDIINPVITPTKLPGSFALKRKEGDTKVVKRRVYCSAAHSPPPAWPGTAIPQPSDFKTWDGPKPISVLGSTGSIGTQTLNIVAEFPERFRVVGLAAGSNVTLLAEQVRIFKPELVALRDESKIDELKEALAGIDHKPEIIPGEQGVIEVARHPDAATVVTGIVGCAGLKPTVAAIEAGKDIALANKETMIAGGAFVLPLAHKNNIKILPADSEHSAIFQCIQGLPKGALRKIQLTGSGGAFREWPAEKMKDIKLKDALKHPIWSLGRKITIDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSLVETQDSSVIAQLGLPDMRLPLLYTLSWPERVYCSEITWPRLDLTKYGSLTFQAPDTKKFPSVNLCYAAGRAGGTMTGVLSAANEIAVELFVAEKISYLDIFKIAELTCNEHQKELVTSPTLEEILHYDQWARQYAAGLQKALSV*