Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667990 | XP_003604693.2 | 97.878 | 1037 | 20 | 2 | 1 | 1035 | 1 | 1037 | 0.0 | 2088 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667990 | sp|Q80XC6|NRDE2_MOUSE | 26.606 | 436 | 249 | 9 | 137 | 537 | 160 | 559 | 1.62e-27 | 124 |
| Msa0667990 | sp|Q80XC6|NRDE2_MOUSE | 26.840 | 462 | 283 | 15 | 607 | 1030 | 586 | 1030 | 2.82e-20 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667990 | G7JP36 | 97.878 | 1037 | 20 | 2 | 1 | 1035 | 1 | 1037 | 0.0 | 2088 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044090 | Msa0667990 | 0.802760 | 4.814038e-49 | -8.615850e-47 |
| Msa0090340 | Msa0667990 | 0.830346 | 3.092280e-55 | -8.615850e-47 |
| Msa0663240 | Msa0667990 | 0.818889 | 1.548662e-52 | -8.615850e-47 |
| Msa0667990 | Msa0688480 | 0.808859 | 2.518290e-50 | -8.615850e-47 |
| Msa0667990 | Msa0925250 | 0.817669 | 2.925772e-52 | -8.615850e-47 |
| Msa0667990 | Msa0925270 | 0.808492 | 3.015874e-50 | -8.615850e-47 |
| Msa0667990 | Msa0925290 | 0.809914 | 1.495041e-50 | -8.615850e-47 |
| Msa0667990 | Msa1117530 | 0.821371 | 4.183116e-53 | -8.615850e-47 |
| Msa0667990 | Msa1186060 | 0.822414 | 2.398827e-53 | -8.615850e-47 |
| Msa0667990 | Msa1367850 | 0.813199 | 2.888897e-51 | -8.615850e-47 |
| Msa0667990 | Msa1403480 | 0.840025 | 1.114445e-57 | -8.615850e-47 |
| Msa0667990 | Msa1411020 | 0.832990 | 6.895480e-56 | -8.615850e-47 |
| Msa0667990 | Msa1420490 | 0.813883 | 2.043217e-51 | -8.615850e-47 |
| Msa0667990 | Msa1423390 | 0.813949 | 1.975148e-51 | -8.615850e-47 |
| Msa0667990 | Msa1424290 | 0.833955 | 3.961697e-56 | -8.615850e-47 |
| Msa0667990 | Msa1434350 | 0.835009 | 2.153351e-56 | -8.615850e-47 |
| Msa0667990 | Msa1439320 | 0.836266 | 1.035060e-56 | -8.615850e-47 |
| Msa0667990 | Msa1440370 | 0.818709 | 1.701610e-52 | -8.615850e-47 |
| Msa0667990 | Msa1440810 | 0.816830 | 4.517877e-52 | -8.615850e-47 |
| Msa0667990 | Msa1443060 | 0.839158 | 1.873618e-57 | -8.615850e-47 |
| Msa0667990 | Msa1453560 | 0.807807 | 4.220365e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667990 | MtrunA17_Chr4g0006741 | 97.878 | 1037 | 20 | 2 | 1 | 1035 | 1 | 1037 | 0.0 | 2088 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667990 | AT3G17740.1 | 53.152 | 1031 | 444 | 15 | 24 | 1035 | 18 | 1028 | 0.0 | 1006 |
| Msa0667990 | AT3G17712.1 | 51.142 | 788 | 347 | 14 | 24 | 794 | 18 | 784 | 0.0 | 698 |
| Msa0667990 | AT3G17712.2 | 48.810 | 840 | 350 | 16 | 24 | 846 | 49 | 825 | 0.0 | 689 |
| Msa0667990 | AT3G17712.3 | 48.985 | 788 | 339 | 15 | 24 | 794 | 18 | 759 | 0.0 | 650 |
Find 221 sgRNAs with CRISPR-Local
Find 532 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCACCTCTTCTATATTTA+TGG | 0.091238 | 4_4:-8847783 | Msa0667990:CDS |
| GATAGCTCAGATGTGTTAAT+TGG | 0.177328 | 4_4:-8851537 | Msa0667990:CDS |
| AGTTGCTACTGCTTTATTTC+AGG | 0.181398 | 4_4:-8850823 | Msa0667990:CDS |
| GGAGAAGTCTTACGCGATTC+TGG | 0.230448 | 4_4:-8853651 | Msa0667990:CDS |
| TTGTTTGAGGAGCTTACTTC+TGG | 0.250717 | 4_4:-8847520 | Msa0667990:CDS |
| AAAATACTCTTGCAACATTC+TGG | 0.251489 | 4_4:-8851504 | Msa0667990:CDS |
| CATCATCACTTGAAGAATCT+TGG | 0.255261 | 4_4:-8851800 | Msa0667990:CDS |
| TGAAAAGAAAATTAGCATTC+TGG | 0.276086 | 4_4:-8851631 | Msa0667990:CDS |
| AAAAGAGGCTCGACTATATT+TGG | 0.284322 | 4_4:-8850051 | Msa0667990:CDS |
| ATGTCTGGGCGACATGTTAA+AGG | 0.285959 | 4_4:-8852074 | Msa0667990:CDS |
| TTCTAAAGCCATATACTTTC+CGG | 0.294879 | 4_4:+8851956 | None:intergenic |
| TGATGCGGGCATTGAAGTTT+TGG | 0.295063 | 4_4:-8847494 | Msa0667990:CDS |
| GACATATTCAAGGGATTATA+CGG | 0.303008 | 4_4:+8852092 | None:intergenic |
| AATCAGGTCTGATGAAAGTT+TGG | 0.310085 | 4_4:-8846378 | Msa0667990:CDS |
| TCCCAATTCATTGACTTCTA+TGG | 0.311831 | 4_4:-8850026 | Msa0667990:CDS |
| ATTGAAGCTTTGTCTGCTTC+AGG | 0.321667 | 4_4:-8851387 | Msa0667990:CDS |
| TTGCGTTTGGCTGTATCTAT+AGG | 0.337095 | 4_4:-8853439 | Msa0667990:intron |
| ATTCTGGAAGTTACAAGTTA+TGG | 0.348037 | 4_4:-8851488 | Msa0667990:CDS |
| TATAATCCCTTGAATATGTC+TGG | 0.349363 | 4_4:-8852089 | Msa0667990:CDS |
| GCATTCCTGCAACCTTATCT+TGG | 0.357772 | 4_4:+8851685 | None:intergenic |
| TGCAAGAAAGGTGTTTGATA+TGG | 0.360767 | 4_4:-8848043 | Msa0667990:CDS |
| ATACTGGTCCGGAAAGTATA+TGG | 0.373451 | 4_4:-8851964 | Msa0667990:CDS |
| CACCATAGAAGTCAATGAAT+TGG | 0.376393 | 4_4:+8850024 | None:intergenic |
| CAAATTCTCAGTATCATCTT+CGG | 0.376651 | 4_4:+8850470 | None:intergenic |
| GCACGAAGAGAGGCTGATTA+TGG | 0.379965 | 4_4:-8848078 | Msa0667990:CDS |
| ATTTATACTTTCAAAGCATA+AGG | 0.380048 | 4_4:+8846220 | None:intergenic |
| TGAGAACAGTATTATCATCT+TGG | 0.381863 | 4_4:-8847594 | Msa0667990:CDS |
| AAATGAAACTGACAATGATT+TGG | 0.382298 | 4_4:-8850538 | Msa0667990:CDS |
| ATTGTATGAGGTGACAATTT+TGG | 0.384240 | 4_4:+8851897 | None:intergenic |
| TAAAGTCTGCTGGGCGATAC+TGG | 0.393649 | 4_4:-8851980 | Msa0667990:CDS |
| TGATATTAATGCTGGGGATG+GGG | 0.400245 | 4_4:-8850430 | Msa0667990:CDS |
| AGTTTGGGAATCCGTTTCTC+AGG | 0.400962 | 4_4:-8846362 | Msa0667990:CDS |
| AACTGACAATGATTTGGTTA+TGG | 0.406218 | 4_4:-8850532 | Msa0667990:CDS |
| GGAAATCGCGTGTTCGAGCT+TGG | 0.407333 | 4_4:-8853526 | Msa0667990:CDS |
| ACCCGCATGATGAAATAGTT+TGG | 0.410461 | 4_4:-8851725 | Msa0667990:CDS |
| TCTGATGAGAGAAGTGGATT+TGG | 0.413272 | 4_4:-8853554 | Msa0667990:CDS |
| AGATGGCGATATTGATGCTT+TGG | 0.414986 | 4_4:-8852012 | Msa0667990:CDS |
| TGTCAGTTTGTTGAACTCCC+TGG | 0.415865 | 4_4:+8851755 | None:intergenic |
| ATGTTCTGCTTCATTGTTTG+AGG | 0.421531 | 4_4:-8847533 | Msa0667990:CDS |
| GATATTAATGCTGGGGATGG+GGG | 0.421772 | 4_4:-8850429 | Msa0667990:CDS |
| ATCATCACTTGAAGAATCTT+GGG | 0.421872 | 4_4:-8851799 | Msa0667990:CDS |
| ATATTGTCTTGCTTAGGAAA+TGG | 0.422114 | 4_4:-8847694 | Msa0667990:CDS |
| AGAGAAGTGGATTTGGTTCG+AGG | 0.423815 | 4_4:-8853547 | Msa0667990:CDS |
| ATGTTAAAGGTTTGTATTGG+TGG | 0.430835 | 4_4:-8852061 | Msa0667990:CDS |
| ATGCCTATTCGAAGGAAGTT+AGG | 0.435294 | 4_4:-8850336 | Msa0667990:intron |
| TTGATATTAATGCTGGGGAT+GGG | 0.436562 | 4_4:-8850431 | Msa0667990:CDS |
| GAGGAATTTCTCCAAGTTCA+AGG | 0.436742 | 4_4:-8851442 | Msa0667990:CDS |
| AAATGAATTCTTCTAACTGT+GGG | 0.442499 | 4_4:-8849000 | Msa0667990:CDS |
| CATTTCAACTTCTCTAACAT+AGG | 0.443693 | 4_4:+8849217 | None:intergenic |
| GAGTTCCAAGATAAGGTTGC+AGG | 0.444561 | 4_4:-8851690 | Msa0667990:CDS |
| GATGATAAAATAAAGTCTGC+TGG | 0.445495 | 4_4:-8851990 | Msa0667990:CDS |
| TTCTTCTGACCATTTGATCC+AGG | 0.447092 | 4_4:+8850386 | None:intergenic |
| GGTTACGCCATGTCGAGCTT+TGG | 0.447534 | 4_4:-8848978 | Msa0667990:CDS |
| TGAGAATTTGCTAAAGCTGC+TGG | 0.447644 | 4_4:-8850457 | Msa0667990:CDS |
| ATCAGGTCTGATGAAAGTTT+GGG | 0.449772 | 4_4:-8846377 | Msa0667990:CDS |
| TTTATACCTTTATCAGATGT+TGG | 0.452048 | 4_4:-8851864 | Msa0667990:CDS |
| CATCCACTGATCACAATCTC+TGG | 0.452538 | 4_4:+8850356 | None:intergenic |
| GCACTTCTTCCCTTCCTCAA+TGG | 0.452858 | 4_4:-8853802 | Msa0667990:CDS |
| GAAATCGCGTGTTCGAGCTT+GGG | 0.455497 | 4_4:-8853525 | Msa0667990:CDS |
| GACATGTTAAAGGTTTGTAT+TGG | 0.456197 | 4_4:-8852064 | Msa0667990:CDS |
| CAATATTGATCTTGCAAGAA+AGG | 0.458569 | 4_4:-8848055 | Msa0667990:CDS |
| CAGAGGCATCAGAAGCAATC+AGG | 0.458800 | 4_4:-8846394 | Msa0667990:CDS |
| AGAAGAAGCGGAAGCGTGAT+AGG | 0.459511 | 4_4:-8853577 | Msa0667990:CDS |
| AACTTCTCTAACATAGGATC+AGG | 0.460179 | 4_4:+8849223 | None:intergenic |
| GTCGTTTCTTCCGCCGGATG+AGG | 0.461191 | 4_4:+8853899 | None:intergenic |
| GGCGCCGTCGTTTCTTCCGC+CGG | 0.463420 | 4_4:+8853893 | None:intergenic |
| CTACCTAACTTCCTTCGAAT+AGG | 0.464372 | 4_4:+8850333 | None:intergenic |
| TGCAGATTTGAGTGGCAGGC+TGG | 0.464824 | 4_4:-8850855 | Msa0667990:CDS |
| CTGGGAATTGATATTAATGC+TGG | 0.465869 | 4_4:-8850438 | Msa0667990:CDS |
| TTAAAAGGTGTAGTGGAAGT+TGG | 0.465903 | 4_4:-8846307 | Msa0667990:CDS |
| GGTGCTAGAGTAGGAGAAGA+AGG | 0.467287 | 4_4:-8850711 | Msa0667990:CDS |
| GACAGAGAACACACTTAGCT+TGG | 0.468388 | 4_4:-8849254 | Msa0667990:CDS |
| ACACTTTGACCTGGATCAAA+TGG | 0.468618 | 4_4:-8850395 | Msa0667990:CDS |
| CTTCAGGCAGCAAGCACTCT+AGG | 0.468679 | 4_4:-8851371 | Msa0667990:CDS |
| ACCATAGAAGTCAATGAATT+GGG | 0.472745 | 4_4:+8850025 | None:intergenic |
| AAATCTAAAGTGAAACTAGT+AGG | 0.473342 | 4_4:+8849160 | None:intergenic |
| TCTTTGCAGATTTGAGTGGC+AGG | 0.476187 | 4_4:-8850859 | Msa0667990:CDS |
| GATTATTTCATTGATTCTCA+TGG | 0.477148 | 4_4:-8853476 | Msa0667990:CDS |
| GAAAATTAGCATTCTGGAGA+AGG | 0.477612 | 4_4:-8851625 | Msa0667990:CDS |
| AAATCATCTTGTATTGTATG+AGG | 0.477643 | 4_4:+8851885 | None:intergenic |
| AGTTCAAGGTTTCCATGGTT+AGG | 0.478362 | 4_4:-8851428 | Msa0667990:CDS |
| TTACGCGATTCTGGAATCTT+CGG | 0.478744 | 4_4:-8853642 | Msa0667990:CDS |
| GTCCACATGGTTGGAGAAAG+AGG | 0.479968 | 4_4:-8850676 | Msa0667990:CDS |
| GATCGTGATAATCTTGCGTT+TGG | 0.480835 | 4_4:-8853452 | Msa0667990:CDS |
| TATTAGACGTTGTGTGGAAG+TGG | 0.480847 | 4_4:+8846284 | None:intergenic |
| AGAAGAGGAAGAAGAAGAAG+CGG | 0.480918 | 4_4:-8853589 | Msa0667990:CDS |
| GTCTAAAGATAAGGAGGGTA+CGG | 0.481907 | 4_4:-8850571 | Msa0667990:CDS |
| ATAGCTCAGATGTGTTAATT+GGG | 0.481935 | 4_4:-8851536 | Msa0667990:CDS |
| CTCCAAGTTCAAGGTTTCCA+TGG | 0.483168 | 4_4:-8851433 | Msa0667990:CDS |
| TTTCACCCTGAACACAAAAG+AGG | 0.486554 | 4_4:-8850066 | Msa0667990:CDS |
| GTCTTGCGGCGGCGATTGCA+CGG | 0.486642 | 4_4:+8853706 | None:intergenic |
| AAAATTCAAGTTGATAGCTA+TGG | 0.486757 | 4_4:+8846443 | None:intergenic |
| ATACATATATTGTCTTGCTT+AGG | 0.487166 | 4_4:-8847700 | Msa0667990:CDS |
| TAGCTGGAGGCCCTGAGAAA+CGG | 0.488750 | 4_4:+8846351 | None:intergenic |
| ACTTGTAACAGCGTTCATCT+AGG | 0.489334 | 4_4:+8846248 | None:intergenic |
| TCTGCTGGGCGATACTGGTC+CGG | 0.492360 | 4_4:-8851975 | Msa0667990:CDS |
| ATGAAAATGAAGGCGGAGGT+TGG | 0.497135 | 4_4:-8850614 | Msa0667990:CDS |
| AAATGACCAATCTGTCGCTC+TGG | 0.499183 | 4_4:-8847557 | Msa0667990:CDS |
| GGGATTATACGGTTTGTGCC+GGG | 0.499324 | 4_4:+8852103 | None:intergenic |
| CTTACTTCTGGATGTGATGC+GGG | 0.501804 | 4_4:-8847508 | Msa0667990:CDS |
| CTCTGCTCTGTGAGTAGCAA+AGG | 0.502309 | 4_4:+8850771 | None:intergenic |
| AACCATGGAAACCTTGAACT+TGG | 0.502602 | 4_4:+8851431 | None:intergenic |
| TTTCAACAAACAGTCCAACT+TGG | 0.503210 | 4_4:-8849276 | Msa0667990:CDS |
| AATGAAGGCGGAGGTTGGTC+TGG | 0.504419 | 4_4:-8850609 | Msa0667990:CDS |
| AACATACCAGAGCGACAGAT+TGG | 0.504775 | 4_4:+8847551 | None:intergenic |
| TGCTGAACAATAGCAGGATC+CGG | 0.505380 | 4_4:+8850912 | None:intergenic |
| GTATTATCATCTTGGTTTCG+TGG | 0.505889 | 4_4:-8847586 | Msa0667990:CDS |
| AGGGATTATACGGTTTGTGC+CGG | 0.507851 | 4_4:+8852102 | None:intergenic |
| GATGTACCAACATCTGATAA+AGG | 0.510740 | 4_4:+8851858 | None:intergenic |
| GGGCTCTCGGTTGGTCCACA+TGG | 0.512719 | 4_4:-8850689 | Msa0667990:CDS |
| AAATTCTCAGTATCATCTTC+GGG | 0.515100 | 4_4:+8850471 | None:intergenic |
| TAAATATAGAAGAGGTGCAT+TGG | 0.516208 | 4_4:+8847786 | None:intergenic |
| CAGATGTGTTAATTGGGAGA+TGG | 0.517234 | 4_4:-8851530 | Msa0667990:CDS |
| AGAACCTTTGTCTAAAGATA+AGG | 0.517317 | 4_4:-8850580 | Msa0667990:CDS |
| TCAGATGTTGGTACATCTCA+AGG | 0.520098 | 4_4:-8851852 | Msa0667990:CDS |
| GATTCTGGAATCTTCGGAAT+CGG | 0.520902 | 4_4:-8853636 | Msa0667990:CDS |
| GAATGGAGAGAGAGAAGAAG+AGG | 0.522028 | 4_4:-8853604 | Msa0667990:CDS |
| AGGCAGCAAGCACTCTAGGC+AGG | 0.522323 | 4_4:-8851367 | Msa0667990:intron |
| CAATTCATTGACTTCTATGG+TGG | 0.522961 | 4_4:-8850023 | Msa0667990:CDS |
| ATCGCGTAAGACTTCTCCTT+CGG | 0.525172 | 4_4:+8853656 | None:intergenic |
| CTCCTCTTTCTCCAACCATG+TGG | 0.525797 | 4_4:+8850674 | None:intergenic |
| TGGAGAAAGAGGAGGAAACT+AGG | 0.527396 | 4_4:-8850665 | Msa0667990:CDS |
| ATATTTATGGTATGCTGAAG+TGG | 0.527552 | 4_4:-8847770 | Msa0667990:CDS |
| AGATGTGTTAATTGGGAGAT+GGG | 0.527919 | 4_4:-8851529 | Msa0667990:CDS |
| TCAAGCTGATGATTCTTCAC+CGG | 0.528047 | 4_4:-8850931 | Msa0667990:CDS |
| CATCATATCAGCATTCCTCA+TGG | 0.528935 | 4_4:+8849123 | None:intergenic |
| TGGAATCAAAGTGGTTCACT+TGG | 0.529079 | 4_4:-8852041 | Msa0667990:CDS |
| CATGCAGAATGGATATTGCC+CGG | 0.529446 | 4_4:-8852121 | Msa0667990:intron |
| TCTTCGGAATCGGATGGAGA+TGG | 0.530873 | 4_4:-8853626 | Msa0667990:CDS |
| ACCAAACTATTTCATCATGC+GGG | 0.535900 | 4_4:+8851724 | None:intergenic |
| GAGAATTTGCTAAAGCTGCT+GGG | 0.536239 | 4_4:-8850456 | Msa0667990:CDS |
| AGTTCTTGCTGAACAATAGC+AGG | 0.537433 | 4_4:+8850906 | None:intergenic |
| TTTAAAAGTTCTGGACTGAA+GGG | 0.539764 | 4_4:+8846325 | None:intergenic |
| GGAATCAAAGTGGTTCACTT+GGG | 0.541162 | 4_4:-8852040 | Msa0667990:CDS |
| GAGTGCTTCACTAGTAGAAG+AGG | 0.542272 | 4_4:+8850151 | None:intergenic |
| GTAGGAGAAGAAGGGGCTCT+CGG | 0.542781 | 4_4:-8850702 | Msa0667990:CDS |
| CTGGACTGAAGGGATATAGC+TGG | 0.546217 | 4_4:+8846335 | None:intergenic |
| CTAGAGTTACTGAGCCATTG+AGG | 0.547683 | 4_4:+8853788 | None:intergenic |
| AATTCTTGCATGTTGTTCAG+AGG | 0.548394 | 4_4:-8851461 | Msa0667990:CDS |
| AAGGCGGAGGTTGGTCTGGT+TGG | 0.548589 | 4_4:-8850605 | Msa0667990:CDS |
| CCCTCCTTATCTTTAGACAA+AGG | 0.550303 | 4_4:+8850576 | None:intergenic |
| GCAATTTATTAGACGTTGTG+TGG | 0.551393 | 4_4:+8846278 | None:intergenic |
| TGCAACCTTATCTTGGAACT+CGG | 0.552722 | 4_4:+8851692 | None:intergenic |
| ATGTCGCCCAGACATATTCA+AGG | 0.553525 | 4_4:+8852082 | None:intergenic |
| TCTCGGTTGGTCCACATGGT+TGG | 0.553706 | 4_4:-8850685 | Msa0667990:CDS |
| AGTTACTGAGCCATTGAGGA+AGG | 0.554051 | 4_4:+8853792 | None:intergenic |
| GTTGTTGATGACGGCGATGT+CGG | 0.556211 | 4_4:+8853757 | None:intergenic |
| AGTGTGTTCTCTGTCCAAGT+TGG | 0.558347 | 4_4:+8849262 | None:intergenic |
| GTGCTAGAGTAGGAGAAGAA+GGG | 0.560165 | 4_4:-8850710 | Msa0667990:CDS |
| AACCAAACTATTTCATCATG+CGG | 0.561510 | 4_4:+8851723 | None:intergenic |
| TCAGTCTTTGCAGATTTGAG+TGG | 0.565941 | 4_4:-8850863 | Msa0667990:CDS |
| CTGATATGATGAAATTCGTA+CGG | 0.566214 | 4_4:-8849111 | Msa0667990:CDS |
| GCAGGAATGCAACGGCAGAA+AGG | 0.566264 | 4_4:-8851672 | Msa0667990:CDS |
| AAAATGAATTCTTCTAACTG+TGG | 0.566727 | 4_4:-8849001 | Msa0667990:CDS |
| GAGAAGAAGGGGCTCTCGGT+TGG | 0.567543 | 4_4:-8850698 | Msa0667990:CDS |
| ATTGATATTAATGCTGGGGA+TGG | 0.569601 | 4_4:-8850432 | Msa0667990:CDS |
| GGAATCGGATGGAGATGGAA+TGG | 0.571757 | 4_4:-8853621 | Msa0667990:CDS |
| ACCTTTGTCTAAAGATAAGG+AGG | 0.573969 | 4_4:-8850577 | Msa0667990:CDS |
| TCGAGCTTGGGCTGATTCTG+AGG | 0.575772 | 4_4:-8853513 | Msa0667990:CDS |
| TGTGGAAGGGCTTCCTCCCG+AGG | 0.576194 | 4_4:-8848010 | Msa0667990:intron |
| GAGCTCTCACATGAAAATGA+AGG | 0.577121 | 4_4:-8850624 | Msa0667990:CDS |
| GTTTGGGAATCCGTTTCTCA+GGG | 0.578296 | 4_4:-8846361 | Msa0667990:CDS |
| ATGATAAAATAAAGTCTGCT+GGG | 0.579028 | 4_4:-8851989 | Msa0667990:CDS |
| TGACAATGATTTGGTTATGG+AGG | 0.580928 | 4_4:-8850529 | Msa0667990:CDS |
| AGAGAACACACTTAGCTTGG+AGG | 0.581855 | 4_4:-8849251 | Msa0667990:CDS |
| AGCATACATCTTCCTAACCA+TGG | 0.583395 | 4_4:+8851416 | None:intergenic |
| ATGGCATTGTTATCTGTGGA+AGG | 0.586327 | 4_4:-8848024 | Msa0667990:CDS |
| TGCTAGAGTAGGAGAAGAAG+GGG | 0.586562 | 4_4:-8850709 | Msa0667990:CDS |
| GGTTCACTTGGGGAAAGAGA+TGG | 0.587707 | 4_4:-8852029 | Msa0667990:CDS |
| GTTACTGAGCCATTGAGGAA+GGG | 0.590186 | 4_4:+8853793 | None:intergenic |
| AGCGACGTCGTTGTTGATGA+CGG | 0.591464 | 4_4:+8853748 | None:intergenic |
| AATAGTCATGGTGCTAGAGT+AGG | 0.592523 | 4_4:-8850720 | Msa0667990:CDS |
| TGGGAATTGATATTAATGCT+GGG | 0.592965 | 4_4:-8850437 | Msa0667990:CDS |
| ATAATCCCTTGAATATGTCT+GGG | 0.593366 | 4_4:-8852088 | Msa0667990:CDS |
| CTGGAATCTTCGGAATCGGA+TGG | 0.596249 | 4_4:-8853632 | Msa0667990:CDS |
| ATCAGTGGATGCCTATTCGA+AGG | 0.597051 | 4_4:-8850344 | Msa0667990:CDS |
| TGGCATTGTTATCTGTGGAA+GGG | 0.597415 | 4_4:-8848023 | Msa0667990:CDS |
| ATTACATAAGGATGCTTCAG+AGG | 0.597554 | 4_4:-8846411 | Msa0667990:CDS |
| CAACTGCTTAGAGCACGTCA+AGG | 0.599219 | 4_4:-8847631 | Msa0667990:CDS |
| GTTTCTTCCGCCGGATGAGG+TGG | 0.601810 | 4_4:+8853902 | None:intergenic |
| AACTGCTTAGAGCACGTCAA+GGG | 0.603024 | 4_4:-8847630 | Msa0667990:CDS |
| TCACATGAAAATGAAGGCGG+AGG | 0.604343 | 4_4:-8850618 | Msa0667990:CDS |
| TGAAGCACTCGAAACAGAAG+AGG | 0.607630 | 4_4:-8850138 | Msa0667990:CDS |
| GACTTTGCCAAAGCTCGACA+TGG | 0.608155 | 4_4:+8848971 | None:intergenic |
| ATGAAATGTTAAATAAAACC+AGG | 0.609052 | 4_4:-8851773 | Msa0667990:CDS |
| GATAGGTCTGATGAGAGAAG+TGG | 0.611307 | 4_4:-8853560 | Msa0667990:CDS |
| CTTCCAGAGATTGTGATCAG+TGG | 0.611821 | 4_4:-8850359 | Msa0667990:CDS |
| TCTCTAACATAGGATCAGGC+AGG | 0.613185 | 4_4:+8849227 | None:intergenic |
| AATTCATTGACTTCTATGGT+GGG | 0.613871 | 4_4:-8850022 | Msa0667990:CDS |
| GCATACCATAAATATAGAAG+AGG | 0.615993 | 4_4:+8847778 | None:intergenic |
| GCTTACTTCTGGATGTGATG+CGG | 0.617239 | 4_4:-8847509 | Msa0667990:CDS |
| GAATCAAAGTGGTTCACTTG+GGG | 0.619557 | 4_4:-8852039 | Msa0667990:CDS |
| TGATATGGCATTGTTATCTG+TGG | 0.623363 | 4_4:-8848028 | Msa0667990:CDS |
| TCTTCCAAAACGTGATTACG+TGG | 0.625230 | 4_4:+8849058 | None:intergenic |
| GGGAGTTCAACAAACTGACA+AGG | 0.625965 | 4_4:-8851752 | Msa0667990:CDS |
| TGCTCTGTGAGTAGCAAAGG+AGG | 0.632640 | 4_4:+8850774 | None:intergenic |
| TTGTATTGGTGGAATCAAAG+TGG | 0.634447 | 4_4:-8852050 | Msa0667990:CDS |
| ATAAGGTTGCAGGAATGCAA+CGG | 0.637235 | 4_4:-8851680 | Msa0667990:CDS |
| TATGGAGGATAATCAAGATG+AGG | 0.643787 | 4_4:-8850514 | Msa0667990:CDS |
| GGGAAGACAGGGAAGAGTGA+AGG | 0.644577 | 4_4:+8853851 | None:intergenic |
| AAGTTAATGACACTTTGACC+TGG | 0.647706 | 4_4:-8850404 | Msa0667990:CDS |
| CAGCTATGAAAATCGACCGA+AGG | 0.650061 | 4_4:-8853672 | Msa0667990:CDS |
| AATGAATTCTTCTAACTGTG+GGG | 0.651322 | 4_4:-8848999 | Msa0667990:CDS |
| GACTGAAGGGATATAGCTGG+AGG | 0.651632 | 4_4:+8846338 | None:intergenic |
| CTCTCACATGAAAATGAAGG+CGG | 0.657419 | 4_4:-8850621 | Msa0667990:CDS |
| GAGCTTGCAAATAACACTAA+CGG | 0.658106 | 4_4:-8847748 | Msa0667990:CDS |
| TGAAATGTTAAATAAAACCA+GGG | 0.660472 | 4_4:-8851772 | Msa0667990:CDS |
| TGTCGCCCAGACATATTCAA+GGG | 0.662414 | 4_4:+8852083 | None:intergenic |
| TTCTATTAGGAAGTTCCATG+AGG | 0.662474 | 4_4:-8849138 | Msa0667990:CDS |
| TAGGCAACGAGTCGTCAAAG+AGG | 0.669463 | 4_4:-8850646 | Msa0667990:CDS |
| GTTGATGACGGCGATGTCGG+TGG | 0.670013 | 4_4:+8853760 | None:intergenic |
| AATACAGTACATACCTCGGG+AGG | 0.671521 | 4_4:+8847997 | None:intergenic |
| TCATCCGGCGGAAGAAACGA+CGG | 0.675988 | 4_4:-8853897 | Msa0667990:CDS |
| ACACAACGTCTAATAAATTG+CGG | 0.684041 | 4_4:-8846276 | Msa0667990:CDS |
| GGAGTTCAACAAACTGACAA+GGG | 0.685275 | 4_4:-8851751 | Msa0667990:CDS |
| GGGAATTGATATTAATGCTG+GGG | 0.694418 | 4_4:-8850436 | Msa0667990:CDS |
| TGGTGTATATGCACGAAGAG+AGG | 0.702422 | 4_4:-8848088 | Msa0667990:CDS |
| CACATGGTTGGAGAAAGAGG+AGG | 0.728895 | 4_4:-8850673 | Msa0667990:CDS |
| CCTTTGTCTAAAGATAAGGA+GGG | 0.731594 | 4_4:-8850576 | Msa0667990:CDS |
| CAACGTCTAATAAATTGCGG+CGG | 0.732271 | 4_4:-8846273 | Msa0667990:CDS |
| CTTGCAAATAACACTAACGG+TGG | 0.740720 | 4_4:-8847745 | Msa0667990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGCAAAAAAATAAATAAA+AGG | + | chr4_4:8852238-8852257 | None:intergenic | 10.0% |
| !!! | TATTATTTATTTTTTTTGGT+AGG | - | chr4_4:8852787-8852806 | Msa0667990:intron | 10.0% |
| !!! | ATTATTTATTTTTTTTGGTA+GGG | - | chr4_4:8852788-8852807 | Msa0667990:intron | 10.0% |
| !! | TGAATCAAAATTAAGTATTT+AGG | - | chr4_4:8846967-8846986 | Msa0667990:intron | 15.0% |
| !! | GAATCAAAATTAAGTATTTA+GGG | - | chr4_4:8846968-8846987 | Msa0667990:intron | 15.0% |
| !! | TATGTCAAAATATAAAGTAA+AGG | + | chr4_4:8847326-8847345 | None:intergenic | 15.0% |
| !!! | TATTTTATTTTTGTTGTTAG+TGG | - | chr4_4:8847907-8847926 | Msa0667990:intron | 15.0% |
| !! | GATAATAAATTGAAAAAAGA+TGG | + | chr4_4:8848796-8848815 | None:intergenic | 15.0% |
| !! | ATAATTTGGATAGTTATAAT+GGG | - | chr4_4:8850529-8850548 | Msa0667990:CDS | 15.0% |
| !! | GATCAAAAATAAAATTTCAT+TGG | - | chr4_4:8851848-8851867 | Msa0667990:CDS | 15.0% |
| !!! | TCTAATTTTTTTTGACTTTT+CGG | - | chr4_4:8851935-8851954 | Msa0667990:CDS | 15.0% |
| !!! | AAACTTTGAAAAAGTATAAA+GGG | + | chr4_4:8852135-8852154 | None:intergenic | 15.0% |
| !!! | AAAACTTTGAAAAAGTATAA+AGG | + | chr4_4:8852136-8852155 | None:intergenic | 15.0% |
| !! | CATTAGTTATTGTAAAATTT+AGG | - | chr4_4:8852749-8852768 | Msa0667990:intron | 15.0% |
| !! | TAATGACATAGAATTATTAT+AGG | + | chr4_4:8853044-8853063 | None:intergenic | 15.0% |
| !!! | TTTTGTTTAACTATTACATA+AGG | - | chr4_4:8853658-8853677 | Msa0667990:CDS | 15.0% |
| !!! | TTTCCCAAAAAAAGTATTTA+GGG | - | chr4_4:8847155-8847174 | Msa0667990:intron | 20.0% |
| !!! | AAACCCTAAATACTTTTTTT+GGG | + | chr4_4:8847161-8847180 | None:intergenic | 20.0% |
| !! | ACCAAATACTCATTATTATA+CGG | + | chr4_4:8847573-8847592 | None:intergenic | 20.0% |
| !!! | TAACTTTGTTTCAATTTTCT+GGG | + | chr4_4:8847745-8847764 | None:intergenic | 20.0% |
| !! | AAAAACAAATAAGAAGTCAA+AGG | + | chr4_4:8847882-8847901 | None:intergenic | 20.0% |
| !! | ATGAAATGTTAAATAAAACC+AGG | - | chr4_4:8848308-8848327 | Msa0667990:intron | 20.0% |
| !! | TGAAATGTTAAATAAAACCA+GGG | - | chr4_4:8848309-8848328 | Msa0667990:intron | 20.0% |
| !!! | TTGTTTGATAAGCTTTTAAA+AGG | + | chr4_4:8848522-8848541 | None:intergenic | 20.0% |
| !! | TGGATGAATGATAATATTAT+AGG | - | chr4_4:8848852-8848871 | Msa0667990:intron | 20.0% |
| !! | GGATGAATGATAATATTATA+GGG | - | chr4_4:8848853-8848872 | Msa0667990:intron | 20.0% |
| !! | TCAAAAATGTAAGCAAAAAT+AGG | + | chr4_4:8849007-8849026 | None:intergenic | 20.0% |
| !!! | ATTCTCAAATAGGTTTTAAA+TGG | - | chr4_4:8849102-8849121 | Msa0667990:CDS | 20.0% |
| !!! | ACAATTTTTTGACAACAATT+TGG | - | chr4_4:8850321-8850340 | Msa0667990:intron | 20.0% |
| !! | CATAATTTGGATAGTTATAA+TGG | - | chr4_4:8850528-8850547 | Msa0667990:CDS | 20.0% |
| !!! | CATAATTATCCATAATTTTC+AGG | + | chr4_4:8850582-8850601 | None:intergenic | 20.0% |
| !! | GATGGTTAATAAATATAACA+AGG | + | chr4_4:8850633-8850652 | None:intergenic | 20.0% |
| !!! | TTCACTTTAGATTTTCTATT+AGG | - | chr4_4:8850930-8850949 | Msa0667990:CDS | 20.0% |
| !! | AATTTATTTATGCTACAGAA+AGG | + | chr4_4:8851189-8851208 | None:intergenic | 20.0% |
| !! | TAAAGTTCAAATATCAGTTT+AGG | + | chr4_4:8851270-8851289 | None:intergenic | 20.0% |
| !! | TTATAAGTTTAACATCATAC+TGG | - | chr4_4:8851287-8851306 | Msa0667990:intron | 20.0% |
| !! | ATCATGTTAAAATTACAGTT+AGG | - | chr4_4:8851311-8851330 | Msa0667990:intron | 20.0% |
| !! | TCATGTTAAAATTACAGTTA+GGG | - | chr4_4:8851312-8851331 | Msa0667990:intron | 20.0% |
| !! | TAACTCATAAAATTAGTTAC+AGG | + | chr4_4:8851467-8851486 | None:intergenic | 20.0% |
| !!! | TAATTTTATGAGTTAGTTAC+AGG | - | chr4_4:8851472-8851491 | Msa0667990:CDS | 20.0% |
| !!! | AACTTTGAAAAAGTATAAAG+GGG | + | chr4_4:8852134-8852153 | None:intergenic | 20.0% |
| !! | GCAAAAAAATAAATAAAAGG+AGG | + | chr4_4:8852235-8852254 | None:intergenic | 20.0% |
| !!! | AATTGTTTTCATTGACTTAA+TGG | - | chr4_4:8852257-8852276 | Msa0667990:intron | 20.0% |
| !!! | CTCAAATTGTTTTACTAAAT+GGG | - | chr4_4:8853016-8853035 | Msa0667990:intron | 20.0% |
| !! | TATAAACTTACTGATAGTAA+AGG | + | chr4_4:8853260-8853279 | None:intergenic | 20.0% |
| !! | TTGATCTATTATGATTCAAT+TGG | - | chr4_4:8853297-8853316 | Msa0667990:intron | 20.0% |
| !! | ATTTATACTTTCAAAGCATA+AGG | + | chr4_4:8853864-8853883 | None:intergenic | 20.0% |
| !! | TTGAAGAGAAGATTTTGTTA+CGG | + | chr4_4:8846255-8846274 | None:intergenic | 25.0% |
| !!! | GATTATTTCATTGATTCTCA+TGG | - | chr4_4:8846605-8846624 | Msa0667990:intron | 25.0% |
| ! | ATCTATAGGTATATTGGAAT+TGG | - | chr4_4:8846656-8846675 | Msa0667990:intron | 25.0% |
| ! | TTGGAATTGGATGAAAAAAT+TGG | - | chr4_4:8846669-8846688 | Msa0667990:intron | 25.0% |
| !!! | GTTTCCCAAAAAAAGTATTT+AGG | - | chr4_4:8847154-8847173 | Msa0667990:intron | 25.0% |
| !!! | CAAACCCTAAATACTTTTTT+TGG | + | chr4_4:8847162-8847181 | None:intergenic | 25.0% |
| !!! | AAAAGTATTTAGGGTTTGTT+TGG | - | chr4_4:8847164-8847183 | Msa0667990:intron | 25.0% |
| ! | CACAAAAATGCACATTAATA+AGG | + | chr4_4:8847432-8847451 | None:intergenic | 25.0% |
| !! | CTAACAAGTATTTGACTTAT+TGG | - | chr4_4:8847482-8847501 | Msa0667990:CDS | 25.0% |
| ! | ACCGTATAATAATGAGTATT+TGG | - | chr4_4:8847569-8847588 | Msa0667990:CDS | 25.0% |
| !!! | AATGAGTATTTGGTTTTGTT+AGG | - | chr4_4:8847579-8847598 | Msa0667990:CDS | 25.0% |
| !!! | GTAACTTTGTTTCAATTTTC+TGG | + | chr4_4:8847746-8847765 | None:intergenic | 25.0% |
| !! | TGAAACAAAGTTACTTGTTT+TGG | - | chr4_4:8847752-8847771 | Msa0667990:CDS | 25.0% |
| !!! | GAAACAAAGTTACTTGTTTT+GGG | - | chr4_4:8847753-8847772 | Msa0667990:CDS | 25.0% |
| ! | TTTATAAATTCCATGCAGAA+TGG | - | chr4_4:8847949-8847968 | Msa0667990:intron | 25.0% |
| ! | ATGATAAAATAAAGTCTGCT+GGG | - | chr4_4:8848092-8848111 | Msa0667990:CDS | 25.0% |
| ! | AAATCATCTTGTATTGTATG+AGG | + | chr4_4:8848199-8848218 | None:intergenic | 25.0% |
| ! | TTTATACCTTTATCAGATGT+TGG | - | chr4_4:8848217-8848236 | Msa0667990:intron | 25.0% |
| !!! | TGATGATGAAATTTTAGAGT+CGG | + | chr4_4:8848269-8848288 | None:intergenic | 25.0% |
| ! | TGAAAAGAAAATTAGCATTC+TGG | - | chr4_4:8848450-8848469 | Msa0667990:intron | 25.0% |
| !! | GTAATAGATTTTCATTCTCT+GGG | + | chr4_4:8848495-8848514 | None:intergenic | 25.0% |
| !! | AGTAATAGATTTTCATTCTC+TGG | + | chr4_4:8848496-8848515 | None:intergenic | 25.0% |
| !!! | TGTCATTTTTATCCATTGAT+GGG | - | chr4_4:8848962-8848981 | Msa0667990:CDS | 25.0% |
| ! | ATTTCAGAAGATTCTCAAAT+AGG | - | chr4_4:8849092-8849111 | Msa0667990:CDS | 25.0% |
| !!! | GGAAAAACTTTATTTTTAGC+AGG | - | chr4_4:8849123-8849142 | Msa0667990:CDS | 25.0% |
| ! | AAATGAAACTGACAATGATT+TGG | - | chr4_4:8849543-8849562 | Msa0667990:intron | 25.0% |
| !!! | TTTTTTGACAACAATTTGGA+TGG | - | chr4_4:8850325-8850344 | Msa0667990:intron | 25.0% |
| ! | GTTAATGCAGTTCAAATATA+TGG | - | chr4_4:8850347-8850366 | Msa0667990:CDS | 25.0% |
| ! | CTTGTATCTTCAACATAATT+TGG | - | chr4_4:8850515-8850534 | Msa0667990:CDS | 25.0% |
| ! | ATTTGAACACCTGAAAATTA+TGG | - | chr4_4:8850570-8850589 | Msa0667990:CDS | 25.0% |
| !! | TTATAATGTGTTGATGTCTT+TGG | - | chr4_4:8850756-8850775 | Msa0667990:CDS | 25.0% |
| !! | AAATCTAAAGTGAAACTAGT+AGG | + | chr4_4:8850924-8850943 | None:intergenic | 25.0% |
| ! | AAAATGAATTCTTCTAACTG+TGG | - | chr4_4:8851080-8851099 | Msa0667990:intron | 25.0% |
| ! | AAATGAATTCTTCTAACTGT+GGG | - | chr4_4:8851081-8851100 | Msa0667990:intron | 25.0% |
| ! | AGGTTATTACAATATTTCCA+TGG | + | chr4_4:8851250-8851269 | None:intergenic | 25.0% |
| !!! | ACATTTTAACCATAAGAACT+GGG | + | chr4_4:8851777-8851796 | None:intergenic | 25.0% |
| !!! | AACATTTTAACCATAAGAAC+TGG | + | chr4_4:8851778-8851797 | None:intergenic | 25.0% |
| ! | GTTTGTATATTGTTCATTGT+AGG | - | chr4_4:8851957-8851976 | Msa0667990:CDS | 25.0% |
| ! | ACAGTGCGTATTAAAATTTA+TGG | - | chr4_4:8852190-8852209 | Msa0667990:intron | 25.0% |
| ! | ATACATATATTGTCTTGCTT+AGG | - | chr4_4:8852381-8852400 | Msa0667990:intron | 25.0% |
| !! | TTGATGCTTGACTTTTAAAT+GGG | + | chr4_4:8852425-8852444 | None:intergenic | 25.0% |
| ! | CTAAAAATTAGACTATCTAC+TGG | + | chr4_4:8852692-8852711 | None:intergenic | 25.0% |
| !!! | TTTATTTTTTTTGGTAGGGT+CGG | - | chr4_4:8852792-8852811 | Msa0667990:intron | 25.0% |
| ! | CCATTTAGTAAAACAATTTG+AGG | + | chr4_4:8853018-8853037 | None:intergenic | 25.0% |
| !!! | CCTCAAATTGTTTTACTAAA+TGG | - | chr4_4:8853015-8853034 | Msa0667990:intron | 25.0% |
| ! | GATCAATACAAGTTTATGTA+AGG | + | chr4_4:8853283-8853302 | None:intergenic | 25.0% |
| !! | TGATTCAATTGGAATTTGTT+TGG | - | chr4_4:8853308-8853327 | Msa0667990:intron | 25.0% |
| ! | TAAATTACCCTTATGTTTCT+AGG | + | chr4_4:8853396-8853415 | None:intergenic | 25.0% |
| !! | GTTATGTAGAATCATTTTGT+CGG | - | chr4_4:8853521-8853540 | Msa0667990:CDS | 25.0% |
| !! | TTATGTAGAATCATTTTGTC+GGG | - | chr4_4:8853522-8853541 | Msa0667990:CDS | 25.0% |
| !!! | AAAATTCAAGTTGATAGCTA+TGG | + | chr4_4:8853641-8853660 | None:intergenic | 25.0% |
| ! | TGAAGAGAAGATTTTGTTAC+GGG | + | chr4_4:8846254-8846273 | None:intergenic | 30.0% |
| ! | TGTTCATTTTGAATTGCATG+TGG | - | chr4_4:8846705-8846724 | Msa0667990:intron | 30.0% |
| TGTGGTTACATTTCTTTCAA+AGG | - | chr4_4:8846806-8846825 | Msa0667990:intron | 30.0% | |
| AGTGTATGTTTGTGCTTTAT+AGG | - | chr4_4:8846869-8846888 | Msa0667990:intron | 30.0% | |
| TTAGTGAGTGTATTGAATGT+TGG | - | chr4_4:8846898-8846917 | Msa0667990:intron | 30.0% | |
| ! | GTGTGAATTTTGTACTGTTA+GGG | - | chr4_4:8846920-8846939 | Msa0667990:intron | 30.0% |
| !!! | TTTTTTTGGGAAACGATATC+CGG | + | chr4_4:8847148-8847167 | None:intergenic | 30.0% |
| !! | CACATTAATAAGGCTTTGTT+TGG | + | chr4_4:8847422-8847441 | None:intergenic | 30.0% |
| ! | TTTTTGTGTTCATAATGCAC+TGG | - | chr4_4:8847444-8847463 | Msa0667990:intron | 30.0% |
| ! | GTCAAATACTTGTTAGATCA+TGG | + | chr4_4:8847478-8847497 | None:intergenic | 30.0% |
| AGTTAGCGATTAAAGTGATA+TGG | - | chr4_4:8847828-8847847 | Msa0667990:intron | 30.0% | |
| ATAAGAAGTCAAAGGTTCAA+TGG | + | chr4_4:8847874-8847893 | None:intergenic | 30.0% | |
| GACATATTCAAGGGATTATA+CGG | + | chr4_4:8847992-8848011 | None:intergenic | 30.0% | |
| TATAATCCCTTGAATATGTC+TGG | - | chr4_4:8847992-8848011 | Msa0667990:intron | 30.0% | |
| ATAATCCCTTGAATATGTCT+GGG | - | chr4_4:8847993-8848012 | Msa0667990:intron | 30.0% | |
| GACATGTTAAAGGTTTGTAT+TGG | - | chr4_4:8848017-8848036 | Msa0667990:CDS | 30.0% | |
| ATGTTAAAGGTTTGTATTGG+TGG | - | chr4_4:8848020-8848039 | Msa0667990:CDS | 30.0% | |
| GATGATAAAATAAAGTCTGC+TGG | - | chr4_4:8848091-8848110 | Msa0667990:CDS | 30.0% | |
| !! | TTCTAAAGCCATATACTTTC+CGG | + | chr4_4:8848128-8848147 | None:intergenic | 30.0% |
| ! | ATTGTATGAGGTGACAATTT+TGG | + | chr4_4:8848187-8848206 | None:intergenic | 30.0% |
| ATCATCACTTGAAGAATCTT+GGG | - | chr4_4:8848282-8848301 | Msa0667990:intron | 30.0% | |
| AACCAAACTATTTCATCATG+CGG | + | chr4_4:8848361-8848380 | None:intergenic | 30.0% | |
| ATAGCTCAGATGTGTTAATT+GGG | - | chr4_4:8848545-8848564 | Msa0667990:intron | 30.0% | |
| AAAATACTCTTGCAACATTC+TGG | - | chr4_4:8848577-8848596 | Msa0667990:intron | 30.0% | |
| ! | ATTCTGGAAGTTACAAGTTA+TGG | - | chr4_4:8848593-8848612 | Msa0667990:intron | 30.0% |
| TTCACGCAAAAATAAGAAGA+GGG | + | chr4_4:8848761-8848780 | None:intergenic | 30.0% | |
| ATTCACGCAAAAATAAGAAG+AGG | + | chr4_4:8848762-8848781 | None:intergenic | 30.0% | |
| ! | TTATCTTGTTTGAACAGACT+TGG | - | chr4_4:8848811-8848830 | Msa0667990:intron | 30.0% |
| ! | CTTTTTCTTTCCCTTAAAAG+TGG | - | chr4_4:8848893-8848912 | Msa0667990:intron | 30.0% |
| !! | CATTTTCCAACCACTTTTAA+GGG | + | chr4_4:8848906-8848925 | None:intergenic | 30.0% |
| !! | TCATTTTCCAACCACTTTTA+AGG | + | chr4_4:8848907-8848926 | None:intergenic | 30.0% |
| !!! | CTGTCATTTTTATCCATTGA+TGG | - | chr4_4:8848961-8848980 | Msa0667990:CDS | 30.0% |
| ! | AATTTTGTTCTTCCCATCAA+TGG | + | chr4_4:8848977-8848996 | None:intergenic | 30.0% |
| AGAACCTTTGTCTAAAGATA+AGG | - | chr4_4:8849501-8849520 | Msa0667990:intron | 30.0% | |
| !! | AACTGACAATGATTTGGTTA+TGG | - | chr4_4:8849549-8849568 | Msa0667990:intron | 30.0% |
| AAATTCTCAGTATCATCTTC+GGG | + | chr4_4:8849613-8849632 | None:intergenic | 30.0% | |
| CAAATTCTCAGTATCATCTT+CGG | + | chr4_4:8849614-8849633 | None:intergenic | 30.0% | |
| TGGGAATTGATATTAATGCT+GGG | - | chr4_4:8849644-8849663 | Msa0667990:intron | 30.0% | |
| CATGATGTTTGTAATGAAAC+TGG | + | chr4_4:8849872-8849891 | None:intergenic | 30.0% | |
| ACCATAGAAGTCAATGAATT+GGG | + | chr4_4:8850059-8850078 | None:intergenic | 30.0% | |
| !! | AATTCATTGACTTCTATGGT+GGG | - | chr4_4:8850059-8850078 | Msa0667990:CDS | 30.0% |
| ! | CGTCTCAATTGTAAGTTTTT+AGG | - | chr4_4:8850086-8850105 | Msa0667990:CDS | 30.0% |
| AGGTGTAAATATCACAACTT+AGG | - | chr4_4:8850106-8850125 | Msa0667990:CDS | 30.0% | |
| ATATGCACATCTGTCAAATA+TGG | + | chr4_4:8850201-8850220 | None:intergenic | 30.0% | |
| ! | GTTGAAGATACAAGATTTTC+AGG | + | chr4_4:8850509-8850528 | None:intergenic | 30.0% |
| TGGTTAACACTGTTTAAATG+AGG | + | chr4_4:8850672-8850691 | None:intergenic | 30.0% | |
| CATTTCAACTTCTCTAACAT+AGG | + | chr4_4:8850867-8850886 | None:intergenic | 30.0% | |
| CTGATATGATGAAATTCGTA+CGG | - | chr4_4:8850970-8850989 | Msa0667990:intron | 30.0% | |
| AATGAATTCTTCTAACTGTG+GGG | - | chr4_4:8851082-8851101 | Msa0667990:intron | 30.0% | |
| TCTCTTAAAAAGTGATAGAC+AGG | - | chr4_4:8851133-8851152 | Msa0667990:intron | 30.0% | |
| TATAGTTGTAGAATGAATCC+TGG | + | chr4_4:8851341-8851360 | None:intergenic | 30.0% | |
| CTGTCTATATATAGTCTTCA+AGG | + | chr4_4:8851435-8851454 | None:intergenic | 30.0% | |
| CTATATATAGACAGACTTCA+TGG | - | chr4_4:8851441-8851460 | Msa0667990:CDS | 30.0% | |
| ! | TAACTTGTGTTAGTTACAGT+TGG | - | chr4_4:8851545-8851564 | Msa0667990:CDS | 30.0% |
| ! | GAATTTTCAATCAAACAAGC+AGG | + | chr4_4:8851700-8851719 | None:intergenic | 30.0% |
| GGGAGAAAAATATAACATGT+TGG | + | chr4_4:8851757-8851776 | None:intergenic | 30.0% | |
| ! | TATTTTTCTCCCAGTTCTTA+TGG | - | chr4_4:8851765-8851784 | Msa0667990:CDS | 30.0% |
| AAATGAAAAGCTGATCAAAG+AGG | - | chr4_4:8851799-8851818 | Msa0667990:CDS | 30.0% | |
| AATGAAAAGCTGATCAAAGA+GGG | - | chr4_4:8851800-8851819 | Msa0667990:CDS | 30.0% | |
| CTTACCATTTACAACAAATG+AGG | + | chr4_4:8851904-8851923 | None:intergenic | 30.0% | |
| CAATATTGATCTTGCAAGAA+AGG | - | chr4_4:8852026-8852045 | Msa0667990:CDS | 30.0% | |
| AGATAATACAGTACATACCT+CGG | + | chr4_4:8852091-8852110 | None:intergenic | 30.0% | |
| !! | TTTCATTGACTTAATGGAGT+AGG | - | chr4_4:8852263-8852282 | Msa0667990:intron | 30.0% |
| ! | TAAATATAGAAGAGGTGCAT+TGG | + | chr4_4:8852298-8852317 | None:intergenic | 30.0% |
| ATGCACCTCTTCTATATTTA+TGG | - | chr4_4:8852298-8852317 | Msa0667990:intron | 30.0% | |
| GCATACCATAAATATAGAAG+AGG | + | chr4_4:8852306-8852325 | None:intergenic | 30.0% | |
| ATATTTATGGTATGCTGAAG+TGG | - | chr4_4:8852311-8852330 | Msa0667990:intron | 30.0% | |
| ATATTGTCTTGCTTAGGAAA+TGG | - | chr4_4:8852387-8852406 | Msa0667990:intron | 30.0% | |
| ! | TGATGCTTGACTTTTAAATG+GGG | + | chr4_4:8852424-8852443 | None:intergenic | 30.0% |
| ! | CTTGATGCTTGACTTTTAAA+TGG | + | chr4_4:8852426-8852445 | None:intergenic | 30.0% |
| TGAGAACAGTATTATCATCT+TGG | - | chr4_4:8852487-8852506 | Msa0667990:intron | 30.0% | |
| ! | TTTGGATCAAGCTTTTACTA+TGG | - | chr4_4:8852605-8852624 | Msa0667990:intron | 30.0% |
| TCAACTTTATAAGCTTACAG+TGG | + | chr4_4:8852715-8852734 | None:intergenic | 30.0% | |
| !!! | TTATTTTTTTTGGTAGGGTC+GGG | - | chr4_4:8852793-8852812 | Msa0667990:intron | 30.0% |
| ! | GGCTAAACTTAGAGTATTAA+CGG | - | chr4_4:8852847-8852866 | Msa0667990:intron | 30.0% |
| !!! | GAAGAAATTGGGTGTTTTTT+AGG | + | chr4_4:8852986-8853005 | None:intergenic | 30.0% |
| ! | AGTAAAACAATTTGAGGTGT+TGG | + | chr4_4:8853012-8853031 | None:intergenic | 30.0% |
| ! | AATTGTCGAGTGAACTTTTT+GGG | + | chr4_4:8853171-8853190 | None:intergenic | 30.0% |
| AAAAAGTTCACTCGACAATT+GGG | - | chr4_4:8853171-8853190 | Msa0667990:intron | 30.0% | |
| ATGACACTTAGTACATTAAG+AGG | + | chr4_4:8853358-8853377 | None:intergenic | 30.0% | |
| GTGTGCTAATAAATAACTAG+TGG | + | chr4_4:8853456-8853475 | None:intergenic | 30.0% | |
| ! | AATCATTTTGTTCTGCAGAA+AGG | - | chr4_4:8853610-8853629 | Msa0667990:CDS | 30.0% |
| !! | TTTAAAAGTTCTGGACTGAA+GGG | + | chr4_4:8853759-8853778 | None:intergenic | 30.0% |
| !!! | TTTTAAAAGTTCTGGACTGA+AGG | + | chr4_4:8853760-8853779 | None:intergenic | 30.0% |
| ! | TTCAGTCCAGAACTTTTAAA+AGG | - | chr4_4:8853759-8853778 | Msa0667990:CDS | 30.0% |
| !! | ACTACACCTTTTAAAAGTTC+TGG | + | chr4_4:8853768-8853787 | None:intergenic | 30.0% |
| !! | AGAACTTTTAAAAGGTGTAG+TGG | - | chr4_4:8853767-8853786 | Msa0667990:CDS | 30.0% |
| ACACAACGTCTAATAAATTG+CGG | - | chr4_4:8853805-8853824 | Msa0667990:CDS | 30.0% | |
| ! | ATGCTTTTAATCATAGACTC+TGG | - | chr4_4:8853882-8853901 | Msa0667990:CDS | 30.0% |
| ! | TGCTTTTAATCATAGACTCT+GGG | - | chr4_4:8853883-8853902 | Msa0667990:CDS | 30.0% |
| ! | GAAGAGAAGATTTTGTTACG+GGG | + | chr4_4:8846253-8846272 | None:intergenic | 35.0% |
| GGCTGTATCTATAGGTATAT+TGG | - | chr4_4:8846650-8846669 | Msa0667990:intron | 35.0% | |
| ! | GGTGTGAATTTTGTACTGTT+AGG | - | chr4_4:8846919-8846938 | Msa0667990:intron | 35.0% |
| ! | GGTTTGCTCTGATTTCAATT+GGG | - | chr4_4:8847115-8847134 | Msa0667990:intron | 35.0% |
| GTTTGCTCTGATTTCAATTG+GGG | - | chr4_4:8847116-8847135 | Msa0667990:intron | 35.0% | |
| TTTGCTCTGATTTCAATTGG+GGG | - | chr4_4:8847117-8847136 | Msa0667990:intron | 35.0% | |
| TCTCTTAAACAGTCTCACAA+GGG | + | chr4_4:8847209-8847228 | None:intergenic | 35.0% | |
| AATATAACGACGATAGAGCT+AGG | - | chr4_4:8847507-8847526 | Msa0667990:CDS | 35.0% | |
| !!! | CTTTAGAGTTTTGCAGGTTA+AGG | - | chr4_4:8847533-8847552 | Msa0667990:CDS | 35.0% |
| ! | CTTCTAACACTAACTGATTC+GGG | + | chr4_4:8847635-8847654 | None:intergenic | 35.0% |
| GCTTCTAACACTAACTGATT+CGG | + | chr4_4:8847636-8847655 | None:intergenic | 35.0% | |
| !! | GTTTCAATTTTCTGGGAACA+AGG | + | chr4_4:8847738-8847757 | None:intergenic | 35.0% |
| ! | TTGTATTGGTGGAATCAAAG+TGG | - | chr4_4:8848031-8848050 | Msa0667990:CDS | 35.0% |
| GATGTACCAACATCTGATAA+AGG | + | chr4_4:8848226-8848245 | None:intergenic | 35.0% | |
| CATCATCACTTGAAGAATCT+TGG | - | chr4_4:8848281-8848300 | Msa0667990:intron | 35.0% | |
| ACCAAACTATTTCATCATGC+GGG | + | chr4_4:8848360-8848379 | None:intergenic | 35.0% | |
| ! | GAAAATTAGCATTCTGGAGA+AGG | - | chr4_4:8848456-8848475 | Msa0667990:intron | 35.0% |
| GATAGCTCAGATGTGTTAAT+TGG | - | chr4_4:8848544-8848563 | Msa0667990:intron | 35.0% | |
| AGATGTGTTAATTGGGAGAT+GGG | - | chr4_4:8848552-8848571 | Msa0667990:intron | 35.0% | |
| AATTCTTGCATGTTGTTCAG+AGG | - | chr4_4:8848620-8848639 | Msa0667990:intron | 35.0% | |
| TTCTTTCCCTTAAAAGTGGT+TGG | - | chr4_4:8848897-8848916 | Msa0667990:intron | 35.0% | |
| ! | ATTTCCATGATTGTGTCACT+TGG | - | chr4_4:8849047-8849066 | Msa0667990:CDS | 35.0% |
| ATTACCAAGTGACACAATCA+TGG | + | chr4_4:8849054-8849073 | None:intergenic | 35.0% | |
| !! | AGTTGCTACTGCTTTATTTC+AGG | - | chr4_4:8849258-8849277 | Msa0667990:CDS | 35.0% |
| ! | AACGACTGTTTGAGCATTTT+TGG | - | chr4_4:8849338-8849357 | Msa0667990:intron | 35.0% |
| !!! | GAGCATTTTTGGAATAGTCA+TGG | - | chr4_4:8849349-8849368 | Msa0667990:intron | 35.0% |
| ACCTTTGTCTAAAGATAAGG+AGG | - | chr4_4:8849504-8849523 | Msa0667990:intron | 35.0% | |
| CCTTTGTCTAAAGATAAGGA+GGG | - | chr4_4:8849505-8849524 | Msa0667990:intron | 35.0% | |
| !! | TGACAATGATTTGGTTATGG+AGG | - | chr4_4:8849552-8849571 | Msa0667990:intron | 35.0% |
| TATGGAGGATAATCAAGATG+AGG | - | chr4_4:8849567-8849586 | Msa0667990:intron | 35.0% | |
| CTGGGAATTGATATTAATGC+TGG | - | chr4_4:8849643-8849662 | Msa0667990:intron | 35.0% | |
| GGGAATTGATATTAATGCTG+GGG | - | chr4_4:8849645-8849664 | Msa0667990:intron | 35.0% | |
| ATTGATATTAATGCTGGGGA+TGG | - | chr4_4:8849649-8849668 | Msa0667990:intron | 35.0% | |
| TTGATATTAATGCTGGGGAT+GGG | - | chr4_4:8849650-8849669 | Msa0667990:intron | 35.0% | |
| AAGTTAATGACACTTTGACC+TGG | - | chr4_4:8849677-8849696 | Msa0667990:intron | 35.0% | |
| AAAAGAGGCTCGACTATATT+TGG | - | chr4_4:8850030-8850049 | Msa0667990:CDS | 35.0% | |
| !! | TCCCAATTCATTGACTTCTA+TGG | - | chr4_4:8850055-8850074 | Msa0667990:CDS | 35.0% |
| CACCATAGAAGTCAATGAAT+TGG | + | chr4_4:8850060-8850079 | None:intergenic | 35.0% | |
| !! | CAATTCATTGACTTCTATGG+TGG | - | chr4_4:8850058-8850077 | Msa0667990:CDS | 35.0% |
| !! | TACTGCTGGTTCAAAGTATT+AGG | - | chr4_4:8850163-8850182 | Msa0667990:intron | 35.0% |
| CTAGAGAACTCCATTATTAG+TGG | - | chr4_4:8850227-8850246 | Msa0667990:intron | 35.0% | |
| TCACATACACCTGAAAATCA+TGG | + | chr4_4:8850447-8850466 | None:intergenic | 35.0% | |
| GGATAATTATGCTCAGTGAA+TGG | - | chr4_4:8850591-8850610 | Msa0667990:CDS | 35.0% | |
| ATGAGGTTAATTACGTTCAG+TGG | + | chr4_4:8850655-8850674 | None:intergenic | 35.0% | |
| AACAAAAGTCGACAAGAACT+TGG | + | chr4_4:8850695-8850714 | None:intergenic | 35.0% | |
| !! | CTGCTTCATTTTTCTTCTGT+AGG | - | chr4_4:8850781-8850800 | Msa0667990:CDS | 35.0% |
| TTTCAACAAACAGTCCAACT+TGG | - | chr4_4:8850805-8850824 | Msa0667990:CDS | 35.0% | |
| AACTTCTCTAACATAGGATC+AGG | + | chr4_4:8850861-8850880 | None:intergenic | 35.0% | |
| ! | GTGCTTTTGTCAAAACGTTA+TGG | + | chr4_4:8850893-8850912 | None:intergenic | 35.0% |
| TTCTATTAGGAAGTTCCATG+AGG | - | chr4_4:8850943-8850962 | Msa0667990:intron | 35.0% | |
| ! | TTTTCCACGTAATCACGTTT+TGG | - | chr4_4:8851019-8851038 | Msa0667990:intron | 35.0% |
| AAATTACAGTTAGGGTTACC+AGG | - | chr4_4:8851320-8851339 | Msa0667990:intron | 35.0% | |
| !! | TCTGCCTCATTTGTTGTAAA+TGG | - | chr4_4:8851897-8851916 | Msa0667990:CDS | 35.0% |
| !! | TTGTAGGATGTTTTGTTGTG+TGG | - | chr4_4:8851973-8851992 | Msa0667990:CDS | 35.0% |
| !! | TGCAAGAAAGGTGTTTGATA+TGG | - | chr4_4:8852038-8852057 | Msa0667990:CDS | 35.0% |
| TGATATGGCATTGTTATCTG+TGG | - | chr4_4:8852053-8852072 | Msa0667990:CDS | 35.0% | |
| GATAATACAGTACATACCTC+GGG | + | chr4_4:8852090-8852109 | None:intergenic | 35.0% | |
| GTGTCTGTATATACAAGTGT+TGG | + | chr4_4:8852172-8852191 | None:intergenic | 35.0% | |
| AAAGGAGGTTGTGTATACAT+AGG | + | chr4_4:8852220-8852239 | None:intergenic | 35.0% | |
| GAGCTTGCAAATAACACTAA+CGG | - | chr4_4:8852333-8852352 | Msa0667990:intron | 35.0% | |
| GTATTATCATCTTGGTTTCG+TGG | - | chr4_4:8852495-8852514 | Msa0667990:intron | 35.0% | |
| ATGTTCTGCTTCATTGTTTG+AGG | - | chr4_4:8852548-8852567 | Msa0667990:intron | 35.0% | |
| ACAAATGAAGATGCATAACC+TGG | + | chr4_4:8852636-8852655 | None:intergenic | 35.0% | |
| !! | TCGGGTTGATTGAAATACTT+GGG | - | chr4_4:8852811-8852830 | Msa0667990:intron | 35.0% |
| AATACTTGGGTGGAATAGAT+AGG | - | chr4_4:8852824-8852843 | Msa0667990:intron | 35.0% | |
| ATACTTGGGTGGAATAGATA+GGG | - | chr4_4:8852825-8852844 | Msa0667990:intron | 35.0% | |
| ! | GAAGTTTAGAGCATATACGA+CGG | - | chr4_4:8852878-8852897 | Msa0667990:intron | 35.0% |
| CTACTTAAGAACCCAAATAG+GGG | + | chr4_4:8852912-8852931 | None:intergenic | 35.0% | |
| CCTACTTAAGAACCCAAATA+GGG | + | chr4_4:8852913-8852932 | None:intergenic | 35.0% | |
| ACCTACTTAAGAACCCAAAT+AGG | + | chr4_4:8852914-8852933 | None:intergenic | 35.0% | |
| ! | GGTGTTGGATTGAAGAAATT+GGG | + | chr4_4:8852997-8853016 | None:intergenic | 35.0% |
| !! | AGGTGTTGGATTGAAGAAAT+TGG | + | chr4_4:8852998-8853017 | None:intergenic | 35.0% |
| !! | TTTTGGGTGCTTATAGAGAA+GGG | + | chr4_4:8853155-8853174 | None:intergenic | 35.0% |
| !!! | TTTTTGGGTGCTTATAGAGA+AGG | + | chr4_4:8853156-8853175 | None:intergenic | 35.0% |
| ! | CAATTGTCGAGTGAACTTTT+TGG | + | chr4_4:8853172-8853191 | None:intergenic | 35.0% |
| CAAAAAGTTCACTCGACAAT+TGG | - | chr4_4:8853170-8853189 | Msa0667990:intron | 35.0% | |
| AAAAGTTCACTCGACAATTG+GGG | - | chr4_4:8853172-8853191 | Msa0667990:intron | 35.0% | |
| AGTCTGACCTAGAAACATAA+GGG | - | chr4_4:8853386-8853405 | Msa0667990:intron | 35.0% | |
| GTTATTTATTAGCACACACG+AGG | - | chr4_4:8853459-8853478 | Msa0667990:CDS | 35.0% | |
| ATTACATAAGGATGCTTCAG+AGG | - | chr4_4:8853670-8853689 | Msa0667990:CDS | 35.0% | |
| AATCAGGTCTGATGAAAGTT+TGG | - | chr4_4:8853703-8853722 | Msa0667990:CDS | 35.0% | |
| ATCAGGTCTGATGAAAGTTT+GGG | - | chr4_4:8853704-8853723 | Msa0667990:CDS | 35.0% | |
| ! | TTAAAAGGTGTAGTGGAAGT+TGG | - | chr4_4:8853774-8853793 | Msa0667990:CDS | 35.0% |
| GCAATTTATTAGACGTTGTG+TGG | + | chr4_4:8853806-8853825 | None:intergenic | 35.0% | |
| ! | ATTTTGTTACGGGGAAGACA+GGG | + | chr4_4:8846244-8846263 | None:intergenic | 40.0% |
| !! | TTACGCGATTCTGGAATCTT+CGG | - | chr4_4:8846439-8846458 | Msa0667990:CDS | 40.0% |
| !! | GATTCTGGAATCTTCGGAAT+CGG | - | chr4_4:8846445-8846464 | Msa0667990:CDS | 40.0% |
| AGAAGAGGAAGAAGAAGAAG+CGG | - | chr4_4:8846492-8846511 | Msa0667990:intron | 40.0% | |
| ! | TCTGATGAGAGAAGTGGATT+TGG | - | chr4_4:8846527-8846546 | Msa0667990:intron | 40.0% |
| GATCGTGATAATCTTGCGTT+TGG | - | chr4_4:8846629-8846648 | Msa0667990:intron | 40.0% | |
| TTGCGTTTGGCTGTATCTAT+AGG | - | chr4_4:8846642-8846661 | Msa0667990:intron | 40.0% | |
| AGGGCTAATGATGCATTTAC+TGG | - | chr4_4:8846939-8846958 | Msa0667990:intron | 40.0% | |
| GGGCTAATGATGCATTTACT+GGG | - | chr4_4:8846940-8846959 | Msa0667990:intron | 40.0% | |
| ATGGTGTAAGCTTGATACCT+AGG | - | chr4_4:8847016-8847035 | Msa0667990:intron | 40.0% | |
| TTAGAACCTCAGACCTAAAG+AGG | + | chr4_4:8847050-8847069 | None:intergenic | 40.0% | |
| ACAAAGGGAATGTTGGCATA+TGG | + | chr4_4:8847077-8847096 | None:intergenic | 40.0% | |
| TGGTCAAACAAAGGGAATGT+TGG | + | chr4_4:8847084-8847103 | None:intergenic | 40.0% | |
| !! | CTATGGACTGGTCAAACAAA+GGG | + | chr4_4:8847092-8847111 | None:intergenic | 40.0% |
| !! | TCTATGGACTGGTCAAACAA+AGG | + | chr4_4:8847093-8847112 | None:intergenic | 40.0% |
| TTTGTTTGACCAGTCCATAG+AGG | - | chr4_4:8847092-8847111 | Msa0667990:intron | 40.0% | |
| TTGTTTGACCAGTCCATAGA+GGG | - | chr4_4:8847093-8847112 | Msa0667990:intron | 40.0% | |
| ! | GGGTTTGCTCTGATTTCAAT+TGG | - | chr4_4:8847114-8847133 | Msa0667990:intron | 40.0% |
| TCTGATTTCAATTGGGGGTT+GGG | - | chr4_4:8847122-8847141 | Msa0667990:intron | 40.0% | |
| CTCTCTTAAACAGTCTCACA+AGG | + | chr4_4:8847210-8847229 | None:intergenic | 40.0% | |
| TGTTCATAATGCACTGGACT+AGG | - | chr4_4:8847450-8847469 | Msa0667990:intron | 40.0% | |
| !!! | AGGCTTCTTTAGAGTTTTGC+AGG | - | chr4_4:8847527-8847546 | Msa0667990:CDS | 40.0% |
| GAGAAGAACTAAGAAGTCAC+AGG | + | chr4_4:8847658-8847677 | None:intergenic | 40.0% | |
| CTCATTACTGTTAGTCACCT+AGG | - | chr4_4:8847675-8847694 | Msa0667990:CDS | 40.0% | |
| TGGAATCAAAGTGGTTCACT+TGG | - | chr4_4:8848040-8848059 | Msa0667990:CDS | 40.0% | |
| GGAATCAAAGTGGTTCACTT+GGG | - | chr4_4:8848041-8848060 | Msa0667990:CDS | 40.0% | |
| GAATCAAAGTGGTTCACTTG+GGG | - | chr4_4:8848042-8848061 | Msa0667990:CDS | 40.0% | |
| AGATGGCGATATTGATGCTT+TGG | - | chr4_4:8848069-8848088 | Msa0667990:CDS | 40.0% | |
| ! | ATACTGGTCCGGAAAGTATA+TGG | - | chr4_4:8848117-8848136 | Msa0667990:intron | 40.0% |
| !!! | ATTTTGGAGCAACAAGACGT+AGG | + | chr4_4:8848171-8848190 | None:intergenic | 40.0% |
| TCAGATGTTGGTACATCTCA+AGG | - | chr4_4:8848229-8848248 | Msa0667990:intron | 40.0% | |
| GGAGTTCAACAAACTGACAA+GGG | - | chr4_4:8848330-8848349 | Msa0667990:intron | 40.0% | |
| ACCCGCATGATGAAATAGTT+TGG | - | chr4_4:8848356-8848375 | Msa0667990:intron | 40.0% | |
| ! | TTTTGCCGAGTTCCAAGATA+AGG | - | chr4_4:8848384-8848403 | Msa0667990:intron | 40.0% |
| TGCAACCTTATCTTGGAACT+CGG | + | chr4_4:8848392-8848411 | None:intergenic | 40.0% | |
| ATAAGGTTGCAGGAATGCAA+CGG | - | chr4_4:8848401-8848420 | Msa0667990:intron | 40.0% | |
| CAGATGTGTTAATTGGGAGA+TGG | - | chr4_4:8848551-8848570 | Msa0667990:intron | 40.0% | |
| GAGGAATTTCTCCAAGTTCA+AGG | - | chr4_4:8848639-8848658 | Msa0667990:intron | 40.0% | |
| AACCATGGAAACCTTGAACT+TGG | + | chr4_4:8848653-8848672 | None:intergenic | 40.0% | |
| AGTTCAAGGTTTCCATGGTT+AGG | - | chr4_4:8848653-8848672 | Msa0667990:intron | 40.0% | |
| AGCATACATCTTCCTAACCA+TGG | + | chr4_4:8848668-8848687 | None:intergenic | 40.0% | |
| ! | ATTGAAGCTTTGTCTGCTTC+AGG | - | chr4_4:8848694-8848713 | Msa0667990:intron | 40.0% |
| TCAAGCTGATGATTCTTCAC+CGG | - | chr4_4:8849150-8849169 | Msa0667990:CDS | 40.0% | |
| AGTTCTTGCTGAACAATAGC+AGG | + | chr4_4:8849178-8849197 | None:intergenic | 40.0% | |
| TCAGTCTTTGCAGATTTGAG+TGG | - | chr4_4:8849218-8849237 | Msa0667990:CDS | 40.0% | |
| ! | AATAGTCATGGTGCTAGAGT+AGG | - | chr4_4:8849361-8849380 | Msa0667990:intron | 40.0% |
| GAGCTCTCACATGAAAATGA+AGG | - | chr4_4:8849457-8849476 | Msa0667990:intron | 40.0% | |
| CTCTCACATGAAAATGAAGG+CGG | - | chr4_4:8849460-8849479 | Msa0667990:intron | 40.0% | |
| CCCTCCTTATCTTTAGACAA+AGG | + | chr4_4:8849508-8849527 | None:intergenic | 40.0% | |
| GTCTAAAGATAAGGAGGGTA+CGG | - | chr4_4:8849510-8849529 | Msa0667990:intron | 40.0% | |
| !! | TGAGAATTTGCTAAAGCTGC+TGG | - | chr4_4:8849624-8849643 | Msa0667990:intron | 40.0% |
| !! | GAGAATTTGCTAAAGCTGCT+GGG | - | chr4_4:8849625-8849644 | Msa0667990:intron | 40.0% |
| TGATATTAATGCTGGGGATG+GGG | - | chr4_4:8849651-8849670 | Msa0667990:intron | 40.0% | |
| ACACTTTGACCTGGATCAAA+TGG | - | chr4_4:8849686-8849705 | Msa0667990:intron | 40.0% | |
| TTCTTCTGACCATTTGATCC+AGG | + | chr4_4:8849698-8849717 | None:intergenic | 40.0% | |
| ATGCCTATTCGAAGGAAGTT+AGG | - | chr4_4:8849745-8849764 | Msa0667990:intron | 40.0% | |
| CTACCTAACTTCCTTCGAAT+AGG | + | chr4_4:8849751-8849770 | None:intergenic | 40.0% | |
| CTATTCGAAGGAAGTTAGGT+AGG | - | chr4_4:8849749-8849768 | Msa0667990:intron | 40.0% | |
| GAAGAGGTTGTATCTGTTCA+TGG | + | chr4_4:8849917-8849936 | None:intergenic | 40.0% | |
| ! | CTTTTGTGTTCAGGGTGAAA+AGG | + | chr4_4:8850015-8850034 | None:intergenic | 40.0% |
| TTTCACCCTGAACACAAAAG+AGG | - | chr4_4:8850015-8850034 | Msa0667990:CDS | 40.0% | |
| AGCACATCAGACTCTTAACA+CGG | + | chr4_4:8850144-8850163 | None:intergenic | 40.0% | |
| GCACATCTGTCAAATATGGA+AGG | + | chr4_4:8850197-8850216 | None:intergenic | 40.0% | |
| ! | AAGGACAGTGCCACTAATAA+TGG | + | chr4_4:8850240-8850259 | None:intergenic | 40.0% |
| ! | GGTGTTATGTGGATGGTTAT+TGG | + | chr4_4:8850419-8850438 | None:intergenic | 40.0% |
| !! | TCATGGTTCATGGTGTTATG+TGG | + | chr4_4:8850430-8850449 | None:intergenic | 40.0% |
| ! | CACCATGAACCATGATTTTC+AGG | - | chr4_4:8850435-8850454 | Msa0667990:CDS | 40.0% |
| CACCTGAAAATCATGGTTCA+TGG | + | chr4_4:8850440-8850459 | None:intergenic | 40.0% | |
| GGTTAATTACGTTCAGTGGA+TGG | + | chr4_4:8850651-8850670 | None:intergenic | 40.0% | |
| AAAAGTCGACAAGAACTTGG+TGG | + | chr4_4:8850692-8850711 | None:intergenic | 40.0% | |
| CATCATATCAGCATTCCTCA+TGG | + | chr4_4:8850961-8850980 | None:intergenic | 40.0% | |
| TCTTCCAAAACGTGATTACG+TGG | + | chr4_4:8851026-8851045 | None:intergenic | 40.0% | |
| AGCATCTACAACTATTGCCA+TGG | - | chr4_4:8851230-8851249 | Msa0667990:intron | 40.0% | |
| AGCTGCATGATACTTAGTGT+AGG | + | chr4_4:8851520-8851539 | None:intergenic | 40.0% | |
| TTAAGCATACACACAGCGTA+TGG | + | chr4_4:8851606-8851625 | None:intergenic | 40.0% | |
| CATTTCCTCAAGCAACAAGA+TGG | + | chr4_4:8851829-8851848 | None:intergenic | 40.0% | |
| ATGGCATTGTTATCTGTGGA+AGG | - | chr4_4:8852057-8852076 | Msa0667990:CDS | 40.0% | |
| TGGCATTGTTATCTGTGGAA+GGG | - | chr4_4:8852058-8852077 | Msa0667990:CDS | 40.0% | |
| CTGTATTATCTGCTGCAACT+TGG | - | chr4_4:8852100-8852119 | Msa0667990:CDS | 40.0% | |
| CTTGCAAATAACACTAACGG+TGG | - | chr4_4:8852336-8852355 | Msa0667990:intron | 40.0% | |
| TTGTTTGAGGAGCTTACTTC+TGG | - | chr4_4:8852561-8852580 | Msa0667990:intron | 40.0% | |
| !! | GTCGGGTTGATTGAAATACT+TGG | - | chr4_4:8852810-8852829 | Msa0667990:intron | 40.0% |
| GGTTGATTGAAATACTTGGG+TGG | - | chr4_4:8852814-8852833 | Msa0667990:intron | 40.0% | |
| TACTTGGGTGGAATAGATAG+GGG | - | chr4_4:8852826-8852845 | Msa0667990:intron | 40.0% | |
| ! | TTTAGAGCATATACGACGGA+TGG | - | chr4_4:8852882-8852901 | Msa0667990:intron | 40.0% |
| ! | CCCTATTTGGGTTCTTAAGT+AGG | - | chr4_4:8852910-8852929 | Msa0667990:intron | 40.0% |
| AAACAAGTAGAGCCCACAAA+AGG | - | chr4_4:8853106-8853125 | Msa0667990:intron | 40.0% | |
| AAAGTTCACTCGACAATTGG+GGG | - | chr4_4:8853173-8853192 | Msa0667990:intron | 40.0% | |
| ! | TGGAATTTGTTTGGTCAGCT+TGG | - | chr4_4:8853317-8853336 | Msa0667990:intron | 40.0% |
| ! | GGAATTTGTTTGGTCAGCTT+GGG | - | chr4_4:8853318-8853337 | Msa0667990:intron | 40.0% |
| CAGTCTGACCTAGAAACATA+AGG | - | chr4_4:8853385-8853404 | Msa0667990:intron | 40.0% | |
| GTGAGCTAAATGCTTAGCTT+TGG | - | chr4_4:8853495-8853514 | Msa0667990:CDS | 40.0% | |
| TATTAGACGTTGTGTGGAAG+TGG | + | chr4_4:8853800-8853819 | None:intergenic | 40.0% | |
| CAACGTCTAATAAATTGCGG+CGG | - | chr4_4:8853808-8853827 | Msa0667990:CDS | 40.0% | |
| ACTTGTAACAGCGTTCATCT+AGG | + | chr4_4:8853836-8853855 | None:intergenic | 40.0% | |
| ! | GAGTGAAGGTTTTGCTTCGT+CGG | + | chr4_4:8846219-8846238 | None:intergenic | 45.0% |
| ! | GATTTTGTTACGGGGAAGAC+AGG | + | chr4_4:8846245-8846264 | None:intergenic | 45.0% |
| GTTACTGAGCCATTGAGGAA+GGG | + | chr4_4:8846291-8846310 | None:intergenic | 45.0% | |
| AGTTACTGAGCCATTGAGGA+AGG | + | chr4_4:8846292-8846311 | None:intergenic | 45.0% | |
| CTAGAGTTACTGAGCCATTG+AGG | + | chr4_4:8846296-8846315 | None:intergenic | 45.0% | |
| ! | CTGTTTTCATCGTCGTCTTG+CGG | + | chr4_4:8846392-8846411 | None:intergenic | 45.0% |
| CAGCTATGAAAATCGACCGA+AGG | - | chr4_4:8846409-8846428 | Msa0667990:CDS | 45.0% | |
| ATCGCGTAAGACTTCTCCTT+CGG | + | chr4_4:8846428-8846447 | None:intergenic | 45.0% | |
| GAATGGAGAGAGAGAAGAAG+AGG | - | chr4_4:8846477-8846496 | Msa0667990:intron | 45.0% | |
| GATAGGTCTGATGAGAGAAG+TGG | - | chr4_4:8846521-8846540 | Msa0667990:intron | 45.0% | |
| ! | AGAGAAGTGGATTTGGTTCG+AGG | - | chr4_4:8846534-8846553 | Msa0667990:intron | 45.0% |
| ! | TTTAGGGTTTGTAACCCGCA+TGG | - | chr4_4:8846984-8847003 | Msa0667990:intron | 45.0% |
| TTAGGGTTTGTAACCCGCAT+GGG | - | chr4_4:8846985-8847004 | Msa0667990:intron | 45.0% | |
| GGTATCAAGCTTACACCATC+AGG | + | chr4_4:8847015-8847034 | None:intergenic | 45.0% | |
| CTAAAGAGGAGCAAACACCT+AGG | + | chr4_4:8847036-8847055 | None:intergenic | 45.0% | |
| CTAGGTGTTTGCTCCTCTTT+AGG | - | chr4_4:8847034-8847053 | Msa0667990:intron | 45.0% | |
| TTTGCTCCTCTTTAGGTCTG+AGG | - | chr4_4:8847041-8847060 | Msa0667990:intron | 45.0% | |
| TGTTTGACCAGTCCATAGAG+GGG | - | chr4_4:8847094-8847113 | Msa0667990:intron | 45.0% | |
| AATCAGAGCAAACCCCTCTA+TGG | + | chr4_4:8847109-8847128 | None:intergenic | 45.0% | |
| CTCTGATTTCAATTGGGGGT+TGG | - | chr4_4:8847121-8847140 | Msa0667990:intron | 45.0% | |
| TCACCTAGGCAGAAGTTCAA+TGG | - | chr4_4:8847689-8847708 | Msa0667990:CDS | 45.0% | |
| CACCTAGGCAGAAGTTCAAT+GGG | - | chr4_4:8847690-8847709 | Msa0667990:CDS | 45.0% | |
| ACCTAGGCAGAAGTTCAATG+GGG | - | chr4_4:8847691-8847710 | Msa0667990:CDS | 45.0% | |
| CAGAAGTTCAATGGGGATTG+CGG | - | chr4_4:8847698-8847717 | Msa0667990:CDS | 45.0% | |
| TTCAATGGGGATTGCGGATT+TGG | - | chr4_4:8847704-8847723 | Msa0667990:CDS | 45.0% | |
| TCAATGGGGATTGCGGATTT+GGG | - | chr4_4:8847705-8847724 | Msa0667990:CDS | 45.0% | |
| CATGCAGAATGGATATTGCC+CGG | - | chr4_4:8847960-8847979 | Msa0667990:intron | 45.0% | |
| AGGGATTATACGGTTTGTGC+CGG | + | chr4_4:8847982-8848001 | None:intergenic | 45.0% | |
| TGTCGCCCAGACATATTCAA+GGG | + | chr4_4:8848001-8848020 | None:intergenic | 45.0% | |
| ATGTCGCCCAGACATATTCA+AGG | + | chr4_4:8848002-8848021 | None:intergenic | 45.0% | |
| ATGTCTGGGCGACATGTTAA+AGG | - | chr4_4:8848007-8848026 | Msa0667990:intron | 45.0% | |
| !! | TGTCAGTTTGTTGAACTCCC+TGG | + | chr4_4:8848329-8848348 | None:intergenic | 45.0% |
| GGGAGTTCAACAAACTGACA+AGG | - | chr4_4:8848329-8848348 | Msa0667990:intron | 45.0% | |
| GAGTTCCAAGATAAGGTTGC+AGG | - | chr4_4:8848391-8848410 | Msa0667990:intron | 45.0% | |
| GCATTCCTGCAACCTTATCT+TGG | + | chr4_4:8848399-8848418 | None:intergenic | 45.0% | |
| CTCCAAGTTCAAGGTTTCCA+TGG | - | chr4_4:8848648-8848667 | Msa0667990:intron | 45.0% | |
| GGATGCTCAGATCACTAACT+TGG | - | chr4_4:8848832-8848851 | Msa0667990:intron | 45.0% | |
| TGCTGAACAATAGCAGGATC+CGG | + | chr4_4:8849172-8849191 | None:intergenic | 45.0% | |
| TCTTTGCAGATTTGAGTGGC+AGG | - | chr4_4:8849222-8849241 | Msa0667990:CDS | 45.0% | |
| GTGCTAGAGTAGGAGAAGAA+GGG | - | chr4_4:8849371-8849390 | Msa0667990:intron | 45.0% | |
| TGCTAGAGTAGGAGAAGAAG+GGG | - | chr4_4:8849372-8849391 | Msa0667990:intron | 45.0% | |
| TGGAGAAAGAGGAGGAAACT+AGG | - | chr4_4:8849416-8849435 | Msa0667990:intron | 45.0% | |
| TCACATGAAAATGAAGGCGG+AGG | - | chr4_4:8849463-8849482 | Msa0667990:intron | 45.0% | |
| ATGAAAATGAAGGCGGAGGT+TGG | - | chr4_4:8849467-8849486 | Msa0667990:intron | 45.0% | |
| GATATTAATGCTGGGGATGG+GGG | - | chr4_4:8849652-8849671 | Msa0667990:intron | 45.0% | |
| CTTCCAGAGATTGTGATCAG+TGG | - | chr4_4:8849722-8849741 | Msa0667990:intron | 45.0% | |
| CATCCACTGATCACAATCTC+TGG | + | chr4_4:8849728-8849747 | None:intergenic | 45.0% | |
| ATCAGTGGATGCCTATTCGA+AGG | - | chr4_4:8849737-8849756 | Msa0667990:intron | 45.0% | |
| GAGTGCTTCACTAGTAGAAG+AGG | + | chr4_4:8849933-8849952 | None:intergenic | 45.0% | |
| ! | TGAAGCACTCGAAACAGAAG+AGG | - | chr4_4:8849943-8849962 | Msa0667990:intron | 45.0% |
| ! | TCGAGCCTCTTTTGTGTTCA+GGG | + | chr4_4:8850023-8850042 | None:intergenic | 45.0% |
| !! | TGTCCTTCTTTGTTGGCTTC+TGG | - | chr4_4:8850253-8850272 | Msa0667990:intron | 45.0% |
| AAGCCAGAAGCCAACAAAGA+AGG | + | chr4_4:8850259-8850278 | None:intergenic | 45.0% | |
| !! | GGTTCATGGTGTTATGTGGA+TGG | + | chr4_4:8850426-8850445 | None:intergenic | 45.0% |
| AGTGTGTTCTCTGTCCAAGT+TGG | + | chr4_4:8850822-8850841 | None:intergenic | 45.0% | |
| GACAGAGAACACACTTAGCT+TGG | - | chr4_4:8850827-8850846 | Msa0667990:CDS | 45.0% | |
| ! | AGAGAACACACTTAGCTTGG+AGG | - | chr4_4:8850830-8850849 | Msa0667990:CDS | 45.0% |
| TCTCTAACATAGGATCAGGC+AGG | + | chr4_4:8850857-8850876 | None:intergenic | 45.0% | |
| ! | ACAGGTGCTATGCTAAGCTA+CGG | - | chr4_4:8851490-8851509 | Msa0667990:CDS | 45.0% |
| TGGTGTATATGCACGAAGAG+AGG | - | chr4_4:8851993-8852012 | Msa0667990:CDS | 45.0% | |
| AATACAGTACATACCTCGGG+AGG | + | chr4_4:8852087-8852106 | None:intergenic | 45.0% | |
| AACTGCTTAGAGCACGTCAA+GGG | - | chr4_4:8852451-8852470 | Msa0667990:intron | 45.0% | |
| AAATGACCAATCTGTCGCTC+TGG | - | chr4_4:8852524-8852543 | Msa0667990:intron | 45.0% | |
| AACATACCAGAGCGACAGAT+TGG | + | chr4_4:8852533-8852552 | None:intergenic | 45.0% | |
| GCTTACTTCTGGATGTGATG+CGG | - | chr4_4:8852572-8852591 | Msa0667990:intron | 45.0% | |
| CTTACTTCTGGATGTGATGC+GGG | - | chr4_4:8852573-8852592 | Msa0667990:intron | 45.0% | |
| !!! | TGATGCGGGCATTGAAGTTT+TGG | - | chr4_4:8852587-8852606 | Msa0667990:intron | 45.0% |
| ! | GCTTTTACTATGGTGCTTCC+AGG | - | chr4_4:8852615-8852634 | Msa0667990:intron | 45.0% |
| ! | ACCCTCTTGCTTCCTTTTGT+GGG | + | chr4_4:8853121-8853140 | None:intergenic | 45.0% |
| AGTTTGGGAATCCGTTTCTC+AGG | - | chr4_4:8853719-8853738 | Msa0667990:CDS | 45.0% | |
| GTTTGGGAATCCGTTTCTCA+GGG | - | chr4_4:8853720-8853739 | Msa0667990:CDS | 45.0% | |
| !!! | CTTTTATTATTTATTTTTTT+TGG | - | chr4_4:8852783-8852802 | Msa0667990:intron | 5.0% |
| GGACCAAAAACCACCTCATC+CGG | - | chr4_4:8846169-8846188 | Msa0667990:three_prime_UTR | 50.0% | |
| ! | GAAGGTTTTGCTTCGTCGGA+CGG | + | chr4_4:8846215-8846234 | None:intergenic | 50.0% |
| GCACTTCTTCCCTTCCTCAA+TGG | - | chr4_4:8846279-8846298 | Msa0667990:CDS | 50.0% | |
| !! | GTTGTTGATGACGGCGATGT+CGG | + | chr4_4:8846327-8846346 | None:intergenic | 50.0% |
| ! | AGCGACGTCGTTGTTGATGA+CGG | + | chr4_4:8846336-8846355 | None:intergenic | 50.0% |
| ! | TTTTCATCGTCGTCTTGCGG+CGG | + | chr4_4:8846389-8846408 | None:intergenic | 50.0% |
| GGAGAAGTCTTACGCGATTC+TGG | - | chr4_4:8846430-8846449 | Msa0667990:CDS | 50.0% | |
| CTGGAATCTTCGGAATCGGA+TGG | - | chr4_4:8846449-8846468 | Msa0667990:CDS | 50.0% | |
| TCTTCGGAATCGGATGGAGA+TGG | - | chr4_4:8846455-8846474 | Msa0667990:CDS | 50.0% | |
| GGAATCGGATGGAGATGGAA+TGG | - | chr4_4:8846460-8846479 | Msa0667990:intron | 50.0% | |
| ! | AGAAGAAGCGGAAGCGTGAT+AGG | - | chr4_4:8846504-8846523 | Msa0667990:intron | 50.0% |
| GAAATCGCGTGTTCGAGCTT+GGG | - | chr4_4:8846556-8846575 | Msa0667990:intron | 50.0% | |
| AAGCGTGTGTTTGACACGTG+TGG | - | chr4_4:8846788-8846807 | Msa0667990:intron | 50.0% | |
| ATTTCAATTGGGGGTTGGGC+CGG | - | chr4_4:8847126-8847145 | Msa0667990:intron | 50.0% | |
| TCCCCATTGAACTTCTGCCT+AGG | + | chr4_4:8847695-8847714 | None:intergenic | 50.0% | |
| CAATGGGGATTGCGGATTTG+GGG | - | chr4_4:8847706-8847725 | Msa0667990:CDS | 50.0% | |
| CGGGCAATATCCATTCTGCA+TGG | + | chr4_4:8847962-8847981 | None:intergenic | 50.0% | |
| GGGATTATACGGTTTGTGCC+GGG | + | chr4_4:8847981-8848000 | None:intergenic | 50.0% | |
| GGTTCACTTGGGGAAAGAGA+TGG | - | chr4_4:8848052-8848071 | Msa0667990:CDS | 50.0% | |
| TAAAGTCTGCTGGGCGATAC+TGG | - | chr4_4:8848101-8848120 | Msa0667990:CDS | 50.0% | |
| TGCTCTGTGAGTAGCAAAGG+AGG | + | chr4_4:8849310-8849329 | None:intergenic | 50.0% | |
| CTCTGCTCTGTGAGTAGCAA+AGG | + | chr4_4:8849313-8849332 | None:intergenic | 50.0% | |
| GGTGCTAGAGTAGGAGAAGA+AGG | - | chr4_4:8849370-8849389 | Msa0667990:intron | 50.0% | |
| GTCCACATGGTTGGAGAAAG+AGG | - | chr4_4:8849405-8849424 | Msa0667990:intron | 50.0% | |
| CTCCTCTTTCTCCAACCATG+TGG | + | chr4_4:8849410-8849429 | None:intergenic | 50.0% | |
| CACATGGTTGGAGAAAGAGG+AGG | - | chr4_4:8849408-8849427 | Msa0667990:intron | 50.0% | |
| TAGGCAACGAGTCGTCAAAG+AGG | - | chr4_4:8849435-8849454 | Msa0667990:intron | 50.0% | |
| ! | GTCGAGCCTCTTTTGTGTTC+AGG | + | chr4_4:8850024-8850043 | None:intergenic | 50.0% |
| ! | AGAGTCTGATGTGCTACTGC+TGG | - | chr4_4:8850149-8850168 | Msa0667990:CDS | 50.0% |
| GTGGCACTGTCCTTCTTTGT+TGG | - | chr4_4:8850246-8850265 | Msa0667990:intron | 50.0% | |
| GACTTTGCCAAAGCTCGACA+TGG | + | chr4_4:8851113-8851132 | None:intergenic | 50.0% | |
| ! | CAGGTGCTATGCTAAGCTAC+GGG | - | chr4_4:8851491-8851510 | Msa0667990:CDS | 50.0% |
| ! | GGAAGCCATCTTGTTGCTTG+AGG | - | chr4_4:8851821-8851840 | Msa0667990:CDS | 50.0% |
| GCACGAAGAGAGGCTGATTA+TGG | - | chr4_4:8852003-8852022 | Msa0667990:CDS | 50.0% | |
| CAACTGCTTAGAGCACGTCA+AGG | - | chr4_4:8852450-8852469 | Msa0667990:intron | 50.0% | |
| AGCCCACAAAAGGAAGCAAG+AGG | - | chr4_4:8853116-8853135 | Msa0667990:intron | 50.0% | |
| GCCCACAAAAGGAAGCAAGA+GGG | - | chr4_4:8853117-8853136 | Msa0667990:intron | 50.0% | |
| ! | GACCCTCTTGCTTCCTTTTG+TGG | + | chr4_4:8853122-8853141 | None:intergenic | 50.0% |
| !! | TATAGAGAAGGGTGCCTGGA+AGG | + | chr4_4:8853144-8853163 | None:intergenic | 50.0% |
| !! | TGCTTATAGAGAAGGGTGCC+TGG | + | chr4_4:8853148-8853167 | None:intergenic | 50.0% |
| ! | GGGGTGTGTGTGTGTTTTGT+GGG | - | chr4_4:8853192-8853211 | Msa0667990:intron | 50.0% |
| ! | GGGTGTGTGTGTGTTTTGTG+GGG | - | chr4_4:8853193-8853212 | Msa0667990:intron | 50.0% |
| ! | GGTGTGTGTGTGTTTTGTGG+GGG | - | chr4_4:8853194-8853213 | Msa0667990:intron | 50.0% |
| ! | GTGTGTGTGTGTTTTGTGGG+GGG | - | chr4_4:8853195-8853214 | Msa0667990:intron | 50.0% |
| ! | TGTGTGTGTGTTTTGTGGGG+GGG | - | chr4_4:8853196-8853215 | Msa0667990:intron | 50.0% |
| !! | CAGAGGCATCAGAAGCAATC+AGG | - | chr4_4:8853687-8853706 | Msa0667990:CDS | 50.0% |
| GACTGAAGGGATATAGCTGG+AGG | + | chr4_4:8853746-8853765 | None:intergenic | 50.0% | |
| CTGGACTGAAGGGATATAGC+TGG | + | chr4_4:8853749-8853768 | None:intergenic | 50.0% | |
| CCAAAAACCACCTCATCCGG+CGG | - | chr4_4:8846172-8846191 | Msa0667990:three_prime_UTR | 55.0% | |
| TCATCCGGCGGAAGAAACGA+CGG | - | chr4_4:8846184-8846203 | Msa0667990:three_prime_UTR | 55.0% | |
| GGGAAGACAGGGAAGAGTGA+AGG | + | chr4_4:8846233-8846252 | None:intergenic | 55.0% | |
| GGAAATCGCGTGTTCGAGCT+TGG | - | chr4_4:8846555-8846574 | Msa0667990:intron | 55.0% | |
| ! | TCGAGCTTGGGCTGATTCTG+AGG | - | chr4_4:8846568-8846587 | Msa0667990:intron | 55.0% |
| ACCATCAGGTCAACCCATGC+GGG | + | chr4_4:8847001-8847020 | None:intergenic | 55.0% | |
| CACCATCAGGTCAACCCATG+CGG | + | chr4_4:8847002-8847021 | None:intergenic | 55.0% | |
| GAGCAAACCCCTCTATGGAC+TGG | + | chr4_4:8847104-8847123 | None:intergenic | 55.0% | |
| GCAGGAATGCAACGGCAGAA+AGG | - | chr4_4:8848409-8848428 | Msa0667990:intron | 55.0% | |
| CTTCAGGCAGCAAGCACTCT+AGG | - | chr4_4:8848710-8848729 | Msa0667990:intron | 55.0% | |
| TGCAGATTTGAGTGGCAGGC+TGG | - | chr4_4:8849226-8849245 | Msa0667990:CDS | 55.0% | |
| GTAGGAGAAGAAGGGGCTCT+CGG | - | chr4_4:8849379-8849398 | Msa0667990:intron | 55.0% | |
| ! | TCTCGGTTGGTCCACATGGT+TGG | - | chr4_4:8849396-8849415 | Msa0667990:intron | 55.0% |
| ! | AATGAAGGCGGAGGTTGGTC+TGG | - | chr4_4:8849472-8849491 | Msa0667990:intron | 55.0% |
| GGTTACGCCATGTCGAGCTT+TGG | - | chr4_4:8851103-8851122 | Msa0667990:intron | 55.0% | |
| ACGGATGGAGCTCCCCTATT+TGG | - | chr4_4:8852897-8852916 | Msa0667990:intron | 55.0% | |
| CGGATGGAGCTCCCCTATTT+GGG | - | chr4_4:8852898-8852917 | Msa0667990:intron | 55.0% | |
| !! | GGGGGTGTGTGTGTGTTTTG+TGG | - | chr4_4:8853191-8853210 | Msa0667990:intron | 55.0% |
| ! | GTGTGTGTGTTTTGTGGGGG+GGG | - | chr4_4:8853197-8853216 | Msa0667990:intron | 55.0% |
| ! | TGTGTGTGTTTTGTGGGGGG+GGG | - | chr4_4:8853198-8853217 | Msa0667990:intron | 55.0% |
| TAGCTGGAGGCCCTGAGAAA+CGG | + | chr4_4:8853733-8853752 | None:intergenic | 55.0% | |
| ! | CCGCCGGATGAGGTGGTTTT+TGG | + | chr4_4:8846175-8846194 | None:intergenic | 60.0% |
| GTTTCTTCCGCCGGATGAGG+TGG | + | chr4_4:8846182-8846201 | None:intergenic | 60.0% | |
| GTCGTTTCTTCCGCCGGATG+AGG | + | chr4_4:8846185-8846204 | None:intergenic | 60.0% | |
| ! | GGTTTTGCTTCGTCGGACGG+TGG | + | chr4_4:8846212-8846231 | None:intergenic | 60.0% |
| !! | GTTGATGACGGCGATGTCGG+TGG | + | chr4_4:8846324-8846343 | None:intergenic | 60.0% |
| ! | ACCCGCATGGGTTGACCTGA+TGG | - | chr4_4:8846997-8847016 | Msa0667990:intron | 60.0% |
| TGGGGATTGCGGATTTGGGG+AGG | - | chr4_4:8847709-8847728 | Msa0667990:CDS | 60.0% | |
| GGGGATTGCGGATTTGGGGA+GGG | - | chr4_4:8847710-8847729 | Msa0667990:CDS | 60.0% | |
| TCTGCTGGGCGATACTGGTC+CGG | - | chr4_4:8848106-8848125 | Msa0667990:intron | 60.0% | |
| AGGCAGCAAGCACTCTAGGC+AGG | - | chr4_4:8848714-8848733 | Msa0667990:intron | 60.0% | |
| GAGAAGAAGGGGCTCTCGGT+TGG | - | chr4_4:8849383-8849402 | Msa0667990:intron | 60.0% | |
| !! | AAGGCGGAGGTTGGTCTGGT+TGG | - | chr4_4:8849476-8849495 | Msa0667990:intron | 60.0% |
| GGAAGCAAGAGGGTCCTTCC+AGG | - | chr4_4:8853127-8853146 | Msa0667990:intron | 60.0% | |
| ! | GTGTGTGTTTTGTGGGGGGG+GGG | - | chr4_4:8853199-8853218 | Msa0667990:intron | 60.0% |
| ! | TGTGTGTTTTGTGGGGGGGG+GGG | - | chr4_4:8853200-8853219 | Msa0667990:intron | 60.0% |
| GTCTTGCGGCGGCGATTGCA+CGG | + | chr4_4:8846378-8846397 | None:intergenic | 65.0% | |
| ! | GGGCTCTCGGTTGGTCCACA+TGG | - | chr4_4:8849392-8849411 | Msa0667990:intron | 65.0% |
| TGTGGAAGGGCTTCCTCCCG+AGG | - | chr4_4:8852071-8852090 | Msa0667990:CDS | 65.0% | |
| ! | GTGTGTTTTGTGGGGGGGGG+GGG | - | chr4_4:8853201-8853220 | Msa0667990:intron | 65.0% |
| ! | TGTGTTTTGTGGGGGGGGGG+GGG | - | chr4_4:8853202-8853221 | Msa0667990:intron | 65.0% |
| GGCGCCGTCGTTTCTTCCGC+CGG | + | chr4_4:8846191-8846210 | None:intergenic | 70.0% | |
| ! | GTGTTTTGTGGGGGGGGGGG+GGG | - | chr4_4:8853203-8853222 | Msa0667990:intron | 70.0% |
| ! | TGTTTTGTGGGGGGGGGGGG+GGG | - | chr4_4:8853204-8853223 | Msa0667990:intron | 70.0% |
| ! | GTTTTGTGGGGGGGGGGGGG+GGG | - | chr4_4:8853205-8853224 | Msa0667990:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 8846167 | 8853936 | 8846167 | ID=Msa0667990;Name=Msa0667990 |
| chr4_4 | mRNA | 8846167 | 8853936 | 8846167 | ID=Msa0667990-mRNA-1;Parent=Msa0667990;Name=Msa0667990-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.87|1|1|1|8|79|1035 |
| chr4_4 | exon | 8846167 | 8846475 | 8846167 | ID=Msa0667990-mRNA-1:exon:2804;Parent=Msa0667990-mRNA-1 |
| chr4_4 | exon | 8847467 | 8847818 | 8847467 | ID=Msa0667990-mRNA-1:exon:2803;Parent=Msa0667990-mRNA-1 |
| chr4_4 | exon | 8848011 | 8848124 | 8848011 | ID=Msa0667990-mRNA-1:exon:2802;Parent=Msa0667990-mRNA-1 |
| chr4_4 | exon | 8848949 | 8849300 | 8848949 | ID=Msa0667990-mRNA-1:exon:2801;Parent=Msa0667990-mRNA-1 |
| chr4_4 | exon | 8850008 | 8850179 | 8850008 | ID=Msa0667990-mRNA-1:exon:2800;Parent=Msa0667990-mRNA-1 |
| chr4_4 | exon | 8850337 | 8850958 | 8850337 | ID=Msa0667990-mRNA-1:exon:2799;Parent=Msa0667990-mRNA-1 |
| chr4_4 | exon | 8851368 | 8852136 | 8851368 | ID=Msa0667990-mRNA-1:exon:2798;Parent=Msa0667990-mRNA-1 |
| chr4_4 | exon | 8853440 | 8853936 | 8853440 | ID=Msa0667990-mRNA-1:exon:2797;Parent=Msa0667990-mRNA-1 |
| chr4_4 | CDS | 8853440 | 8853936 | 8853440 | ID=Msa0667990-mRNA-1:cds;Parent=Msa0667990-mRNA-1 |
| chr4_4 | CDS | 8851368 | 8852136 | 8851368 | ID=Msa0667990-mRNA-1:cds;Parent=Msa0667990-mRNA-1 |
| chr4_4 | CDS | 8850337 | 8850958 | 8850337 | ID=Msa0667990-mRNA-1:cds;Parent=Msa0667990-mRNA-1 |
| chr4_4 | CDS | 8850008 | 8850179 | 8850008 | ID=Msa0667990-mRNA-1:cds;Parent=Msa0667990-mRNA-1 |
| chr4_4 | CDS | 8848949 | 8849300 | 8848949 | ID=Msa0667990-mRNA-1:cds;Parent=Msa0667990-mRNA-1 |
| chr4_4 | CDS | 8848011 | 8848124 | 8848011 | ID=Msa0667990-mRNA-1:cds;Parent=Msa0667990-mRNA-1 |
| chr4_4 | CDS | 8847467 | 8847818 | 8847467 | ID=Msa0667990-mRNA-1:cds;Parent=Msa0667990-mRNA-1 |
| chr4_4 | CDS | 8846246 | 8846475 | 8846246 | ID=Msa0667990-mRNA-1:cds;Parent=Msa0667990-mRNA-1 |
| chr4_4 | three_prime_UTR | 8846167 | 8846245 | 8846167 | ID=Msa0667990-mRNA-1:three_prime_utr;Parent=Msa0667990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
