AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0090340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090340 MtrunA17_Chr1g0210221 96.916 227 7 0 1 227 1 227 1.37e-159 440
Msa0090340 MtrunA17_Chr7g0249231 42.273 220 114 1 4 223 72 278 2.02e-50 165
Msa0090340 MtrunA17_Chr1g0169451 40.000 225 113 6 7 223 151 361 6.64e-37 132
Msa0090340 MtrunA17_Chr5g0397071 32.432 222 124 4 7 219 138 342 1.64e-23 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090340 AT1G25520.1 76.419 229 53 1 1 228 1 229 1.03e-115 330
Msa0090340 AT1G68650.1 75.439 228 55 1 1 228 1 227 6.16e-114 325
Msa0090340 AT5G36290.1 40.625 224 115 2 3 223 80 288 1.83e-48 161
Msa0090340 AT5G36290.2 40.625 224 115 2 3 223 80 288 1.83e-48 161
Msa0090340 AT4G13590.2 39.732 224 115 5 7 223 145 355 3.40e-39 139
Msa0090340 AT4G13590.1 39.732 224 115 5 7 223 145 355 3.59e-39 139
Msa0090340 AT1G64150.1 32.340 235 118 4 1 219 152 361 2.22e-23 97.1

Find 165 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTACATTAATTAAATT+TGG 0.066790 1_2:-72312301 None:intergenic
TATATATGATATTCAATTTA+TGG 0.143029 1_2:+72313080 Msa0090340:three_prime_UTR
TAAACCATAGACTCTTTAAA+AGG 0.225221 1_2:-72312246 None:intergenic
CGAATCATGCAAACCTAATC+TGG 0.234432 1_2:+72313318 Msa0090340:three_prime_UTR
TCCTTGAAAGAGGCTATATT+TGG 0.236172 1_2:+72310275 Msa0090340:CDS
TTTCTCTCCCATCTTGTTAC+AGG 0.249070 1_2:+72311116 Msa0090340:CDS
CTTTACATTCTAAAGTGAAT+TGG 0.268811 1_2:-72312882 None:intergenic
GGTGGAAAGGCAAGCTCTTT+TGG 0.271380 1_2:-72312196 None:intergenic
TTGTGGTTGCAATACCTATA+TGG 0.276655 1_2:+72312848 Msa0090340:three_prime_UTR
TTCTCTCTGTTCTTGTTGGT+TGG 0.281934 1_2:+72309943 Msa0090340:CDS
TGTCTCAAAAGTTATATAAA+TGG 0.289019 1_2:+72313903 Msa0090340:three_prime_UTR
AACCCATTTGGCGTGGTTCT+TGG 0.294089 1_2:+72311395 Msa0090340:CDS
TGTACTTCTGCTGCTGTTAT+CGG 0.295744 1_2:+72311706 Msa0090340:CDS
AAAAGAATGCTCACCAGATT+TGG 0.301865 1_2:-72309972 None:intergenic
AATATCATATATACCATATA+GGG 0.302899 1_2:-72313070 None:intergenic
ATTACGACGTTCTTATTCTT+CGG 0.306446 1_2:+72310239 Msa0090340:CDS
CATGTGAAAGTTAGCATAAA+AGG 0.307951 1_2:+72312446 Msa0090340:three_prime_UTR
TTCCTACATTAATTAAATTT+GGG 0.308143 1_2:-72312300 None:intergenic
CAAGATTGGGGTGAGGTAGA+AGG 0.310224 1_2:+72312696 Msa0090340:three_prime_UTR
ACAATTCTCTCTGTTCTTGT+TGG 0.313902 1_2:+72309939 Msa0090340:CDS
ACATTTGATTTGTTAACTAA+TGG 0.316243 1_2:-72312918 None:intergenic
TTGTGTGACATGTCATCTTA+TGG 0.318729 1_2:-72313295 None:intergenic
TTACACTTTAGTCACTTTAG+AGG 0.321690 1_2:+72313038 Msa0090340:intron
GAGGATTCAAATCCCCTATA+TGG 0.334626 1_2:+72313057 Msa0090340:three_prime_UTR
TGGTTGGGCTGCTCCAAATC+TGG 0.336034 1_2:+72309959 Msa0090340:CDS
TGGTTCGTTCAACCCTTAAC+TGG 0.340621 1_2:+72308961 Msa0090340:five_prime_UTR
GTGTGAATTGTTACCAGTTA+AGG 0.342140 1_2:-72308974 None:intergenic
CCACGACGCCTTGTCTTAAC+AGG 0.342518 1_2:+72309757 Msa0090340:CDS
GAATATCATATATACCATAT+AGG 0.345054 1_2:-72313071 None:intergenic
TCTCTCTGTTCTTGTTGGTT+GGG 0.349163 1_2:+72309944 Msa0090340:CDS
TTGCAGTAACGGATTCTCTA+TGG 0.349576 1_2:+72312354 Msa0090340:three_prime_UTR
AATCAAAGCAAATTTATGAT+AGG 0.351747 1_2:-72313600 None:intergenic
GGAAGTAATAAAACAAGATT+GGG 0.356011 1_2:+72312683 Msa0090340:three_prime_UTR
CTTCTGTCAATCTCACTTGC+AGG 0.356511 1_2:-72313272 None:intergenic
ATTTGGCAGGTTGGACTCTC+AGG 0.356838 1_2:+72312023 Msa0090340:intron
AAATGCCATGCTACTTAAGT+TGG 0.363284 1_2:-72313193 None:intergenic
TTACGACGTTCTTATTCTTC+GGG 0.364759 1_2:+72310240 Msa0090340:CDS
AATTAATGTAGGAAGTTGAT+TGG 0.364857 1_2:+72312309 Msa0090340:three_prime_UTR
GAATTTCCAATGCTTATTGC+TGG 0.370263 1_2:+72312533 Msa0090340:three_prime_UTR
GGCTTGATGTTGGGGACATC+GGG 0.375158 1_2:-72313126 None:intergenic
TGCAATGGAGATAATTAGAT+TGG 0.377252 1_2:+72313372 Msa0090340:three_prime_UTR
GCAAGGGATGGCTTGATGTT+GGG 0.381808 1_2:-72313135 None:intergenic
AAGATTGGGGTGAGGTAGAA+GGG 0.385206 1_2:+72312697 Msa0090340:three_prime_UTR
ATTGTAATTAGGACAAAGAT+TGG 0.389163 1_2:+72310522 Msa0090340:intron
TATTCTTCGGGTTTGGACTT+TGG 0.392999 1_2:+72310252 Msa0090340:CDS
AGAGCTTGCCTTTCCACCTT+GGG 0.393106 1_2:+72312201 Msa0090340:three_prime_UTR
CCTCCAAGAACCACGCCAAA+TGG 0.394458 1_2:-72311398 None:intergenic
GGTCACAATGCAAGAGTATT+GGG 0.394608 1_2:-72312780 None:intergenic
TTTACATTCTAAAGTGAATT+GGG 0.403310 1_2:-72312881 None:intergenic
ACGTTCTTATTCTTCGGGTT+TGG 0.403780 1_2:+72310245 Msa0090340:CDS
AATGACCCTGCCTGGGTTGT+AGG 0.407490 1_2:+72312662 Msa0090340:three_prime_UTR
CGAGTGGATAGTGCAAGTTT+TGG 0.411610 1_2:-72313665 None:intergenic
AGGAAGTAATAAAACAAGAT+TGG 0.418084 1_2:+72312682 Msa0090340:three_prime_UTR
GGCTGAAGTTGAAGCTGAAC+TGG 0.424673 1_2:+72310432 Msa0090340:CDS
CCATTGCAAGGAAAAGAGTA+TGG 0.424791 1_2:-72313357 None:intergenic
TCCAAATATAGCCTCTTTCA+AGG 0.428412 1_2:-72310276 None:intergenic
AAACCAAGTCTACCCAGATT+AGG 0.431568 1_2:-72313331 None:intergenic
TGGCTTGATGTTGGGGACAT+CGG 0.431889 1_2:-72313127 None:intergenic
GAGATCACAAAAGAATTTGT+TGG 0.434053 1_2:+72313435 Msa0090340:three_prime_UTR
AACTACAAAAGATACCAAAA+AGG 0.434168 1_2:+72310559 Msa0090340:CDS
TGTGAATTGTTACCAGTTAA+GGG 0.434221 1_2:-72308973 None:intergenic
CTTGTTACAGTGGTTGAGAT+TGG 0.435916 1_2:+72312170 Msa0090340:three_prime_UTR
GCTGCAGATGAAAACCCATT+TGG 0.436487 1_2:+72311383 Msa0090340:CDS
TCAATTTATGGAAATCTTAG+TGG 0.443978 1_2:+72313092 Msa0090340:three_prime_UTR
TTATGCAGATCTCTCGTAGT+TGG 0.455915 1_2:+72310207 Msa0090340:intron
TCTAAAGTGAATTGGGAAGT+TGG 0.458090 1_2:-72312874 None:intergenic
AATGATGAAGTCTATGCTAT+TGG 0.459214 1_2:+72312096 Msa0090340:exon
CAATTTATGGAAATCTTAGT+GGG 0.461923 1_2:+72313093 Msa0090340:three_prime_UTR
TGTGGTTGCAATACCTATAT+GGG 0.463329 1_2:+72312849 Msa0090340:three_prime_UTR
TCTCACTTGCAGGATCTACT+TGG 0.465689 1_2:-72313262 None:intergenic
AAGAGCTTGCCTTTCCACCT+TGG 0.467866 1_2:+72312200 Msa0090340:three_prime_UTR
TGGGAAGTTGGATCCCATAT+AGG 0.469866 1_2:-72312862 None:intergenic
TATGCAGATCTCTCGTAGTT+GGG 0.473253 1_2:+72310208 Msa0090340:intron
TTGAATCTGTCACAACATAC+AGG 0.474290 1_2:-72312815 None:intergenic
AAACCATAGACTCTTTAAAA+GGG 0.476907 1_2:-72312245 None:intergenic
CGACTGAAGAAAGGAATGAT+TGG 0.477906 1_2:-72312073 None:intergenic
CCATTTGGCGTGGTTCTTGG+AGG 0.480629 1_2:+72311398 Msa0090340:CDS
ACTGCAAGTACGTGTTGAAA+AGG 0.483032 1_2:-72312338 None:intergenic
TTCATCTGCAGCTAAACCTA+TGG 0.483168 1_2:-72311372 None:intergenic
ATTGAGAGAGGAAGATAAAG+AGG 0.483256 1_2:-72312494 None:intergenic
ACTGTGAAAATGACCCTGCC+TGG 0.483337 1_2:+72312654 Msa0090340:three_prime_UTR
AGCAAGGGATGGCTTGATGT+TGG 0.485588 1_2:-72313136 None:intergenic
ATTTATTACCTGTAACAAGA+TGG 0.486365 1_2:-72311124 None:intergenic
CATTTGGCGTGGTTCTTGGA+GGG 0.488586 1_2:+72311399 Msa0090340:CDS
TGCTCATTCAAATCTACGAC+AGG 0.490494 1_2:-72313702 None:intergenic
AATGCCATGCTACTTAAGTT+GGG 0.490985 1_2:-72313192 None:intergenic
TTTGTTCAGTTGGCTACCAT+AGG 0.495409 1_2:+72311356 Msa0090340:intron
TGGACTTTGGTCCTTGAAAG+AGG 0.497549 1_2:+72310265 Msa0090340:CDS
AAAACCAAGCTTGTTTGTAT+GGG 0.498552 1_2:+72312724 Msa0090340:three_prime_UTR
CTCCAAGAACCACGCCAAAT+GGG 0.499798 1_2:-72311397 None:intergenic
ATTCCACCAGCAATAAGCAT+TGG 0.500025 1_2:-72312539 None:intergenic
AAATATGAGCTCAATTGTTC+AGG 0.500477 1_2:+72309045 Msa0090340:exon
TTTATTACCTGTAACAAGAT+GGG 0.502150 1_2:-72311123 None:intergenic
GAATTTGTTGGTGACTCAGA+TGG 0.502464 1_2:+72313447 Msa0090340:three_prime_UTR
ATGGAGATAATTAGATTGGA+TGG 0.505199 1_2:+72313376 Msa0090340:three_prime_UTR
TATCCACTCGCTCTAATCTC+AGG 0.505318 1_2:+72313678 Msa0090340:three_prime_UTR
GGACAGGGAATCAGAGGAGT+TGG 0.506438 1_2:+72310411 Msa0090340:intron
AGGTCACAATGCAAGAGTAT+TGG 0.509695 1_2:-72312781 None:intergenic
CAAGGGATGGCTTGATGTTG+GGG 0.511192 1_2:-72313134 None:intergenic
TCAACACGTACTTGCAGTAA+CGG 0.514939 1_2:+72312343 Msa0090340:three_prime_UTR
TTCATCATTCGACTGAAGAA+AGG 0.517530 1_2:-72312082 None:intergenic
GATGTACACAAGTTAACTGT+TGG 0.518197 1_2:-72313979 None:intergenic
CTGTTAAGACAAGGCGTCGT+GGG 0.520280 1_2:-72309756 None:intergenic
TTTCTAAGCTACTTGAGGGT+AGG 0.524668 1_2:-72313576 None:intergenic
AAACCTAATCTGGGTAGACT+TGG 0.526015 1_2:+72313328 Msa0090340:three_prime_UTR
TAGGTGAAGTGGTGAACACT+TGG 0.528491 1_2:-72313557 None:intergenic
AAAGAGGCTATATTTGGAGA+AGG 0.530172 1_2:+72310281 Msa0090340:CDS
TTTCCAATGCTTATTGCTGG+TGG 0.533139 1_2:+72312536 Msa0090340:three_prime_UTR
TTACTTCCTACAACCCAGGC+AGG 0.536764 1_2:-72312668 None:intergenic
AAGAGGCTATATTTGGAGAA+GGG 0.538449 1_2:+72310282 Msa0090340:CDS
TAGTCCTTATACACCATCCC+AGG 0.540962 1_2:-72312623 None:intergenic
TTGGATAGATTAAGTCAGGT+GGG 0.542073 1_2:-72313646 None:intergenic
TGCAGTAACGGATTCTCTAT+GGG 0.542097 1_2:+72312355 Msa0090340:three_prime_UTR
AGATTGGGGTGAGGTAGAAG+GGG 0.542993 1_2:+72312698 Msa0090340:three_prime_UTR
GACCCAAATTTAATTAATGT+AGG 0.546688 1_2:+72312298 Msa0090340:three_prime_UTR
AGCTTTGACCCAAGGTGGAA+AGG 0.549201 1_2:-72312209 None:intergenic
AAGATAAAGAGGTTAAGTGT+AGG 0.549712 1_2:-72312483 None:intergenic
CTTAAGTTGGGCTCCAGTGA+AGG 0.551044 1_2:-72313180 None:intergenic
TAATCATATCAATTCAGTGT+TGG 0.551555 1_2:+72308941 None:intergenic
ACAACCCATACAAACAAGCT+TGG 0.553522 1_2:-72312728 None:intergenic
AGCAAACATGCTTGTTACAG+TGG 0.556245 1_2:+72312160 Msa0090340:three_prime_UTR
CTACTTGAGGGTAGGTGAAG+TGG 0.558672 1_2:-72313568 None:intergenic
TGAATGGGGTGACAAGAGCC+AGG 0.563011 1_2:+72311247 Msa0090340:CDS
GTTGGGCTCCAGTGAAGGAA+AGG 0.563774 1_2:-72313175 None:intergenic
ATCTAATTATCTCCATTGCA+AGG 0.567163 1_2:-72313369 None:intergenic
TTAAGTGTAGGCACATGGAA+TGG 0.568804 1_2:-72312471 None:intergenic
TTTGGATAGATTAAGTCAGG+TGG 0.571686 1_2:-72313647 None:intergenic
TTTGATGGACAGGGAATCAG+AGG 0.572662 1_2:+72310405 Msa0090340:intron
GAATCATGCAAACCTAATCT+GGG 0.572828 1_2:+72313319 Msa0090340:three_prime_UTR
ATGGTGTATAAGGACTAAGT+TGG 0.576005 1_2:+72312629 Msa0090340:three_prime_UTR
TAATTAGGACAAAGATTGGA+AGG 0.578900 1_2:+72310526 Msa0090340:intron
TTATGCAAGCAAGCAAGGGA+TGG 0.585475 1_2:-72313147 None:intergenic
ACTTCTGCTGCTGTTATCGG+AGG 0.588680 1_2:+72311709 Msa0090340:CDS
GATCTCAGAGAGAACGGTCA+TGG 0.590501 1_2:-72309182 None:intergenic
TTTATTACTTCCTACAACCC+AGG 0.590706 1_2:-72312672 None:intergenic
ATGACCGTTCTCTCTGAGAT+CGG 0.592001 1_2:+72309184 Msa0090340:CDS
CTGTGAAAATGACCCTGCCT+GGG 0.596629 1_2:+72312655 Msa0090340:three_prime_UTR
AGAATGAAAGCTTTGACCCA+AGG 0.600986 1_2:-72312217 None:intergenic
AATCATAATTCAAATTGTCA+AGG 0.608632 1_2:-72313524 None:intergenic
TCACAACATACAGGCATGGA+CGG 0.609913 1_2:-72312806 None:intergenic
ATGAAAGCTTTGACCCAAGG+TGG 0.611430 1_2:-72312214 None:intergenic
CCTGTTAAGACAAGGCGTCG+TGG 0.612195 1_2:-72309757 None:intergenic
GGGCCTGAGATTAGAGCGAG+TGG 0.612744 1_2:-72313681 None:intergenic
ATCACCGATCTCAGAGAGAA+CGG 0.615665 1_2:-72309188 None:intergenic
TGGCAGGTTGGACTCTCAGG+TGG 0.615800 1_2:+72312026 Msa0090340:intron
ACATACAGGCATGGACGGAA+AGG 0.617790 1_2:-72312801 None:intergenic
AATAAAACAAGATTGGGGTG+AGG 0.618298 1_2:+72312689 Msa0090340:three_prime_UTR
CGAGACAACCTGTTAAGACA+AGG 0.619024 1_2:-72309765 None:intergenic
AGAGGTTAAGTGTAGGCACA+TGG 0.620341 1_2:-72312476 None:intergenic
CTTCTGCTGCTGTTATCGGA+GGG 0.621384 1_2:+72311710 Msa0090340:CDS
CTGTTGGAGTATTGTCTACG+AGG 0.622157 1_2:-72313963 None:intergenic
GGAGCCCAACTTAAGTAGCA+TGG 0.625775 1_2:+72313188 Msa0090340:three_prime_UTR
AGTCCTTATACACCATCCCA+GGG 0.627247 1_2:-72312622 None:intergenic
TACTTCCTACAACCCAGGCA+GGG 0.629717 1_2:-72312667 None:intergenic
TGTTGGAGTATTGTCTACGA+GGG 0.631262 1_2:-72313962 None:intergenic
ATATCATATATACCATATAG+GGG 0.639416 1_2:-72313069 None:intergenic
AGATGAAAACCCATTTGGCG+TGG 0.640914 1_2:+72311388 Msa0090340:CDS
TCTGTCACAACATACAGGCA+TGG 0.650709 1_2:-72312810 None:intergenic
AATTTATGGAAATCTTAGTG+GGG 0.653113 1_2:+72313094 Msa0090340:three_prime_UTR
ATGCATCAATAGATTGAGAG+AGG 0.653137 1_2:-72312506 None:intergenic
GAAGTAATAAAACAAGATTG+GGG 0.671838 1_2:+72312684 Msa0090340:three_prime_UTR
TCCTTATACACCATCCCAGG+GGG 0.685373 1_2:-72312620 None:intergenic
GTCCTTATACACCATCCCAG+GGG 0.692552 1_2:-72312621 None:intergenic
GTTGGAGTATTGTCTACGAG+GGG 0.706936 1_2:-72313961 None:intergenic
GCTCATTCAAATCTACGACA+GGG 0.711540 1_2:-72313701 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATGATATTCAATTTA+TGG + chr1_2:72313080-72313099 Msa0090340:three_prime_UTR 10.0%
!!! TATTCATTTTGATTTTGATT+AGG + chr1_2:72309141-72309160 Msa0090340:intron 15.0%
!!! ATTCATTTTGATTTTGATTA+GGG + chr1_2:72309142-72309161 Msa0090340:intron 15.0%
!!! CTATAATTTGAAATTTTACA+AGG - chr1_2:72309913-72309932 None:intergenic 15.0%
!! CTTGTAAAATTTCAAATTAT+AGG + chr1_2:72309911-72309930 Msa0090340:intron 15.0%
!! TAACTTATTCATACTTTAAT+AGG + chr1_2:72310859-72310878 Msa0090340:intron 15.0%
!!! TTTCATTTTCTTGTATATAT+TGG + chr1_2:72311291-72311310 Msa0090340:intron 15.0%
!! AATTATTAGTTGTTTATTAC+AGG + chr1_2:72311671-72311690 Msa0090340:intron 15.0%
!! ATTATTAGTTGTTTATTACA+GGG + chr1_2:72311672-72311691 Msa0090340:intron 15.0%
!! GAAATTACTTGAATTAAAAA+AGG - chr1_2:72311840-72311859 None:intergenic 15.0%
!! TTCCTACATTAATTAAATTT+GGG - chr1_2:72312303-72312322 None:intergenic 15.0%
!! AATATCATATATACCATATA+GGG - chr1_2:72313073-72313092 None:intergenic 15.0%
!! ACAAAAATTGTGAAAAAAAA+TGG - chr1_2:72313783-72313802 None:intergenic 15.0%
!!! TAATACAACTCTTTTAATTA+AGG + chr1_2:72313935-72313954 Msa0090340:three_prime_UTR 15.0%
!! AAACAGAAAATGAAAAAATG+AGG - chr1_2:72309095-72309114 None:intergenic 20.0%
!! ATTCAGTTACAATTCATTAT+TGG + chr1_2:72309426-72309445 Msa0090340:intron 20.0%
!! GAGTTTCAATTTCAAATATT+AGG + chr1_2:72309483-72309502 Msa0090340:intron 20.0%
!! AGATAACAAATATATCAAAC+AGG + chr1_2:72309637-72309656 Msa0090340:intron 20.0%
!! AAAAACAAAGATAACAAATC+TGG - chr1_2:72309861-72309880 None:intergenic 20.0%
!!! TATCTTTGTTTTTAAAGTAG+TGG + chr1_2:72309868-72309887 Msa0090340:intron 20.0%
!! ATCAAAGAAAAAAGATAATG+CGG - chr1_2:72310161-72310180 None:intergenic 20.0%
!! AATAGCATGAAAATCAATAA+GGG - chr1_2:72310189-72310208 None:intergenic 20.0%
!! TAATAGCATGAAAATCAATA+AGG - chr1_2:72310190-72310209 None:intergenic 20.0%
!! TTCATTAGAAATGTATAATC+AGG - chr1_2:72310334-72310353 None:intergenic 20.0%
!! TTCGTAATAAATTCATTTGA+TGG + chr1_2:72310390-72310409 Msa0090340:intron 20.0%
!!! AGTAGACAAAATATTTTCTA+TGG - chr1_2:72310730-72310749 None:intergenic 20.0%
!! CAAATATATCTTTAACCATT+TGG - chr1_2:72310771-72310790 None:intergenic 20.0%
!! CAAATGGTTAAAGATATATT+TGG + chr1_2:72310769-72310788 Msa0090340:intron 20.0%
!! TTTGACAAATAATGTGTATT+AGG - chr1_2:72311041-72311060 None:intergenic 20.0%
!!! CATTATTTGTCAAATTTTTC+AGG + chr1_2:72311047-72311066 Msa0090340:intron 20.0%
!!! TAACTTTTTTTTTGTTCAGT+TGG + chr1_2:72311346-72311365 Msa0090340:intron 20.0%
!! TTATTAGTTGTTTATTACAG+GGG + chr1_2:72311673-72311692 Msa0090340:intron 20.0%
!! TTAAAAAAGGTGGAAAAAAA+AGG - chr1_2:72311827-72311846 None:intergenic 20.0%
!! ATTACTTGAATTAAAAAAGG+TGG - chr1_2:72311837-72311856 None:intergenic 20.0%
!! AGTAAATGAAAAAGAAGTAA+TGG + chr1_2:72311883-72311902 Msa0090340:intron 20.0%
!!! GGAATTCTTTTTATTGTTTT+TGG + chr1_2:72312047-72312066 Msa0090340:CDS 20.0%
!! CTTCCTACATTAATTAAATT+TGG - chr1_2:72312304-72312323 None:intergenic 20.0%
!!! TTTACATTCTAAAGTGAATT+GGG - chr1_2:72312884-72312903 None:intergenic 20.0%
!!! ACATTTGATTTGTTAACTAA+TGG - chr1_2:72312921-72312940 None:intergenic 20.0%
!! ATATCATATATACCATATAG+GGG - chr1_2:72313072-72313091 None:intergenic 20.0%
!! GAATATCATATATACCATAT+AGG - chr1_2:72313074-72313093 None:intergenic 20.0%
!! AATCATAATTCAAATTGTCA+AGG - chr1_2:72313527-72313546 None:intergenic 20.0%
!! AATCAAAGCAAATTTATGAT+AGG - chr1_2:72313603-72313622 None:intergenic 20.0%
!! TGTCTCAAAAGTTATATAAA+TGG + chr1_2:72313903-72313922 Msa0090340:three_prime_UTR 20.0%
! AATGAGGTGAAATAATTGAT+AGG - chr1_2:72309079-72309098 None:intergenic 25.0%
!!! TGAATAGTTATTGAGTTGAT+TGG - chr1_2:72309354-72309373 None:intergenic 25.0%
! TGCATAATTCCTAAAATTGA+AGG + chr1_2:72309529-72309548 Msa0090340:intron 25.0%
! GCATAATTCCTAAAATTGAA+GGG + chr1_2:72309530-72309549 Msa0090340:intron 25.0%
! CATAATTCCTAAAATTGAAG+GGG + chr1_2:72309531-72309550 Msa0090340:intron 25.0%
! AACAAATATATCAAACAGGA+AGG + chr1_2:72309641-72309660 Msa0090340:intron 25.0%
! ACAAATATATCAAACAGGAA+GGG + chr1_2:72309642-72309661 Msa0090340:intron 25.0%
! TCAGCATGAGTATATATTAT+AGG + chr1_2:72310114-72310133 Msa0090340:intron 25.0%
! TCAAAGAAAAAAGATAATGC+GGG - chr1_2:72310160-72310179 None:intergenic 25.0%
!! AATAAATTCATTTGATGGAC+AGG + chr1_2:72310395-72310414 Msa0090340:intron 25.0%
!! ATAAATTCATTTGATGGACA+GGG + chr1_2:72310396-72310415 Msa0090340:intron 25.0%
!!! GTTGGTTTTTCAACATTATT+TGG + chr1_2:72310454-72310473 Msa0090340:intron 25.0%
! TTGTCCTAATTACAATACAA+GGG - chr1_2:72310518-72310537 None:intergenic 25.0%
! TTTGTCCTAATTACAATACA+AGG - chr1_2:72310519-72310538 None:intergenic 25.0%
! ATTGTAATTAGGACAAAGAT+TGG + chr1_2:72310522-72310541 Msa0090340:intron 25.0%
! AACTACAAAAGATACCAAAA+AGG + chr1_2:72310559-72310578 Msa0090340:CDS 25.0%
!!! CAGGTATTATTTTACCTTTT+TGG - chr1_2:72310576-72310595 None:intergenic 25.0%
! TGTGATATTTGATTACCAAA+TGG + chr1_2:72310753-72310772 Msa0090340:intron 25.0%
! ATGCCACAAAAAAACATAAA+CGG + chr1_2:72311076-72311095 Msa0090340:CDS 25.0%
! GAGAAAAACTGAGATAAAAA+TGG - chr1_2:72311102-72311121 None:intergenic 25.0%
! TTTATTACCTGTAACAAGAT+GGG - chr1_2:72311126-72311145 None:intergenic 25.0%
! ATTTATTACCTGTAACAAGA+TGG - chr1_2:72311127-72311146 None:intergenic 25.0%
! GAATTCAGTTAAATATTGCA+TGG - chr1_2:72311161-72311180 None:intergenic 25.0%
! AAGTGAAAAGGAATCAAATT+TGG - chr1_2:72311193-72311212 None:intergenic 25.0%
!!! GCATTTTCTATCACTTTTTT+TGG + chr1_2:72311224-72311243 Msa0090340:CDS 25.0%
!!! TATCACTTTTTTTGGTGAAT+GGG + chr1_2:72311232-72311251 Msa0090340:CDS 25.0%
! GAAAATAGTCATAATCTTGA+AGG - chr1_2:72311485-72311504 None:intergenic 25.0%
!! AGATTATGACTATTTTCCTT+TGG + chr1_2:72311488-72311507 Msa0090340:intron 25.0%
! TATTAGTTGTTTATTACAGG+GGG + chr1_2:72311674-72311693 Msa0090340:intron 25.0%
! AAAAAGGTGACAAAAACATA+TGG - chr1_2:72311811-72311830 None:intergenic 25.0%
! AATAGATGCAAACAATTTCT+AGG + chr1_2:72311918-72311937 Msa0090340:intron 25.0%
! GGTAAAGATTAAGATAAGTA+TGG + chr1_2:72311974-72311993 Msa0090340:intron 25.0%
! AAATGTTGAATACAGCATTT+AGG - chr1_2:72312007-72312026 None:intergenic 25.0%
! TAAATGCTGTATTCAACATT+TGG + chr1_2:72312006-72312025 Msa0090340:intron 25.0%
!! AAACCATAGACTCTTTAAAA+GGG - chr1_2:72312248-72312267 None:intergenic 25.0%
! TAAACCATAGACTCTTTAAA+AGG - chr1_2:72312249-72312268 None:intergenic 25.0%
! GACCCAAATTTAATTAATGT+AGG + chr1_2:72312298-72312317 Msa0090340:three_prime_UTR 25.0%
!! AATTAATGTAGGAAGTTGAT+TGG + chr1_2:72312309-72312328 Msa0090340:three_prime_UTR 25.0%
! AGGAAGTAATAAAACAAGAT+TGG + chr1_2:72312682-72312701 Msa0090340:three_prime_UTR 25.0%
! GGAAGTAATAAAACAAGATT+GGG + chr1_2:72312683-72312702 Msa0090340:three_prime_UTR 25.0%
! GAAGTAATAAAACAAGATTG+GGG + chr1_2:72312684-72312703 Msa0090340:three_prime_UTR 25.0%
!!! CTTTACATTCTAAAGTGAAT+TGG - chr1_2:72312885-72312904 None:intergenic 25.0%
! TAAAGTGACTAAAGTGTAAA+GGG - chr1_2:72313001-72313020 None:intergenic 25.0%
! TCAATTTATGGAAATCTTAG+TGG + chr1_2:72313092-72313111 Msa0090340:three_prime_UTR 25.0%
! CAATTTATGGAAATCTTAGT+GGG + chr1_2:72313093-72313112 Msa0090340:three_prime_UTR 25.0%
! AATTTATGGAAATCTTAGTG+GGG + chr1_2:72313094-72313113 Msa0090340:three_prime_UTR 25.0%
!!! GATGGATTTTTAGTTTAGAA+TGG + chr1_2:72313465-72313484 Msa0090340:three_prime_UTR 25.0%
! TCGTTTCTCTAATTAAAAAC+AGG - chr1_2:72313749-72313768 None:intergenic 25.0%
TGTGAATTGTTACCAGTTAA+GGG - chr1_2:72308976-72308995 None:intergenic 30.0%
AAATATGAGCTCAATTGTTC+AGG + chr1_2:72309045-72309064 Msa0090340:exon 30.0%
TTGAGGTGAGGAAATAAATA+AGG - chr1_2:72309263-72309282 None:intergenic 30.0%
! ATTATCACCCCTTCAATTTT+AGG - chr1_2:72309541-72309560 None:intergenic 30.0%
TGATGCTTATTTCAAGATAC+TGG + chr1_2:72309723-72309742 Msa0090340:intron 30.0%
CAAATCTGGAAAAGAAAGAA+AGG - chr1_2:72309847-72309866 None:intergenic 30.0%
!! TGATGATTCTGAAGTTAAAC+CGG - chr1_2:72310001-72310020 None:intergenic 30.0%
ATTACGACGTTCTTATTCTT+CGG + chr1_2:72310239-72310258 Msa0090340:CDS 30.0%
!! GTATAATCAGGTTGATATGA+GGG - chr1_2:72310322-72310341 None:intergenic 30.0%
!! TGTATAATCAGGTTGATATG+AGG - chr1_2:72310323-72310342 None:intergenic 30.0%
AACACCCTTGTATTGTAATT+AGG + chr1_2:72310511-72310530 Msa0090340:intron 30.0%
TAATTAGGACAAAGATTGGA+AGG + chr1_2:72310526-72310545 Msa0090340:intron 30.0%
AAAGATTGGAAGGCTAAAAA+TGG + chr1_2:72310536-72310555 Msa0090340:CDS 30.0%
CAGCACAGATTTAATTAAAC+AGG - chr1_2:72310595-72310614 None:intergenic 30.0%
! AGTAGTGCAATTGAAGATTT+TGG - chr1_2:72310916-72310935 None:intergenic 30.0%
!!! CTATCACTTTTTTTGGTGAA+TGG + chr1_2:72311231-72311250 Msa0090340:CDS 30.0%
!!! ATCACTTTTTTTGGTGAATG+GGG + chr1_2:72311233-72311252 Msa0090340:CDS 30.0%
TAAGAAATTTGTAGCACCTT+AGG - chr1_2:72311639-72311658 None:intergenic 30.0%
TGCTACAAATTTCTTAGAAG+AGG + chr1_2:72311643-72311662 Msa0090340:intron 30.0%
! ATCTCAGATTTCTGAAAAAG+TGG + chr1_2:72311744-72311763 Msa0090340:CDS 30.0%
! AGAAGTAATGGAAAACTTGA+TGG + chr1_2:72311895-72311914 Msa0090340:intron 30.0%
ATTCTAATTTACCACACTAC+TGG + chr1_2:72311953-72311972 Msa0090340:intron 30.0%
AATGATGAAGTCTATGCTAT+TGG + chr1_2:72312096-72312115 Msa0090340:exon 30.0%
CATGTGAAAGTTAGCATAAA+AGG + chr1_2:72312446-72312465 Msa0090340:three_prime_UTR 30.0%
AAGATAAAGAGGTTAAGTGT+AGG - chr1_2:72312486-72312505 None:intergenic 30.0%
!! TTTTAATTCATTATTCCCCC+TGG + chr1_2:72312605-72312624 Msa0090340:three_prime_UTR 30.0%
TTTAATTCATTATTCCCCCT+GGG + chr1_2:72312606-72312625 Msa0090340:three_prime_UTR 30.0%
! AAAAACCAAGCTTGTTTGTA+TGG + chr1_2:72312723-72312742 Msa0090340:three_prime_UTR 30.0%
! AAAACCAAGCTTGTTTGTAT+GGG + chr1_2:72312724-72312743 Msa0090340:three_prime_UTR 30.0%
! GATTCAAAAAGTGTAAGTTG+TGG + chr1_2:72312831-72312850 Msa0090340:three_prime_UTR 30.0%
! TTACACTTTAGTCACTTTAG+AGG + chr1_2:72313002-72313021 Msa0090340:intron 30.0%
AAAGTGACTAAAGTGTAAAG+GGG - chr1_2:72313000-72313019 None:intergenic 30.0%
CTAAAGTGACTAAAGTGTAA+AGG - chr1_2:72313002-72313021 None:intergenic 30.0%
! TTACACTTTAGTCACTTTAG+AGG + chr1_2:72313002-72313021 Msa0090340:intron 30.0%
! ATTTTTATGCAAGCAAGCAA+GGG - chr1_2:72313154-72313173 None:intergenic 30.0%
ATCTAATTATCTCCATTGCA+AGG - chr1_2:72313372-72313391 None:intergenic 30.0%
TGCAATGGAGATAATTAGAT+TGG + chr1_2:72313372-72313391 Msa0090340:three_prime_UTR 30.0%
ATGGAGATAATTAGATTGGA+TGG + chr1_2:72313376-72313395 Msa0090340:three_prime_UTR 30.0%
!!! AGTTTTGGATAGATTAAGTC+AGG - chr1_2:72313653-72313672 None:intergenic 30.0%
AACAGGAAAAAGTCATACAA+TGG - chr1_2:72313732-72313751 None:intergenic 30.0%
GTGTGAATTGTTACCAGTTA+AGG - chr1_2:72308977-72308996 None:intergenic 35.0%
!!! TAAGACTTTTTTTGCAGCTG+CGG + chr1_2:72309210-72309229 Msa0090340:CDS 35.0%
ACAATTCTCTCTGTTCTTGT+TGG + chr1_2:72309939-72309958 Msa0090340:CDS 35.0%
AAAAGAATGCTCACCAGATT+TGG - chr1_2:72309975-72309994 None:intergenic 35.0%
!!! TGGTGAGCATTCTTTTTTAC+CGG + chr1_2:72309979-72309998 Msa0090340:intron 35.0%
TTACGACGTTCTTATTCTTC+GGG + chr1_2:72310240-72310259 Msa0090340:CDS 35.0%
TCCTTGAAAGAGGCTATATT+TGG + chr1_2:72310275-72310294 Msa0090340:CDS 35.0%
TCCAAATATAGCCTCTTTCA+AGG - chr1_2:72310279-72310298 None:intergenic 35.0%
AAAGAGGCTATATTTGGAGA+AGG + chr1_2:72310281-72310300 Msa0090340:CDS 35.0%
AAGAGGCTATATTTGGAGAA+GGG + chr1_2:72310282-72310301 Msa0090340:CDS 35.0%
TGAGATCAAAAGAGTGAACA+TGG - chr1_2:72310636-72310655 None:intergenic 35.0%
! GTTCTGTTGTTGTAGTTCTA+AGG - chr1_2:72310800-72310819 None:intergenic 35.0%
TAGGAACTTCAAATCTTGCA+AGG + chr1_2:72310878-72310897 Msa0090340:intron 35.0%
!!! TGGCCGTTTATGTTTTTTTG+TGG - chr1_2:72311082-72311101 None:intergenic 35.0%
! GTTTTCTAACTATCCTTACC+TGG - chr1_2:72311268-72311287 None:intergenic 35.0%
GTCAATGAAGAAACAAATGC+AGG - chr1_2:72311517-72311536 None:intergenic 35.0%
TACACTCTTTCACATTTGCA+AGG - chr1_2:72311573-72311592 None:intergenic 35.0%
AGAGTGTAGTGTTTGTTTAG+AGG + chr1_2:72311585-72311604 Msa0090340:intron 35.0%
ACAGATATGTCTTATGCCTA+AGG + chr1_2:72311620-72311639 Msa0090340:intron 35.0%
CTTAATCTTTACCAGTAGTG+TGG - chr1_2:72311967-72311986 None:intergenic 35.0%
TTCATCATTCGACTGAAGAA+AGG - chr1_2:72312085-72312104 None:intergenic 35.0%
!! TCACCCTTTTAAAGAGTCTA+TGG + chr1_2:72312242-72312261 Msa0090340:three_prime_UTR 35.0%
ATTGAGAGAGGAAGATAAAG+AGG - chr1_2:72312497-72312516 None:intergenic 35.0%
ATGCATCAATAGATTGAGAG+AGG - chr1_2:72312509-72312528 None:intergenic 35.0%
GAATTTCCAATGCTTATTGC+TGG + chr1_2:72312533-72312552 Msa0090340:three_prime_UTR 35.0%
ATGGTGTATAAGGACTAAGT+TGG + chr1_2:72312629-72312648 Msa0090340:three_prime_UTR 35.0%
TTTATTACTTCCTACAACCC+AGG - chr1_2:72312675-72312694 None:intergenic 35.0%
AATAAAACAAGATTGGGGTG+AGG + chr1_2:72312689-72312708 Msa0090340:three_prime_UTR 35.0%
! GTGCTTGAATGCTTGATTTT+AGG + chr1_2:72312749-72312768 Msa0090340:three_prime_UTR 35.0%
TTGAATCTGTCACAACATAC+AGG - chr1_2:72312818-72312837 None:intergenic 35.0%
TTGTGGTTGCAATACCTATA+TGG + chr1_2:72312848-72312867 Msa0090340:three_prime_UTR 35.0%
TGTGGTTGCAATACCTATAT+GGG + chr1_2:72312849-72312868 Msa0090340:three_prime_UTR 35.0%
! TCTAAAGTGAATTGGGAAGT+TGG - chr1_2:72312877-72312896 None:intergenic 35.0%
! CATTTTTATGCAAGCAAGCA+AGG - chr1_2:72313155-72313174 None:intergenic 35.0%
TAAAAATGCCTTTCCTTCAC+TGG + chr1_2:72313167-72313186 Msa0090340:three_prime_UTR 35.0%
! AATGCCATGCTACTTAAGTT+GGG - chr1_2:72313195-72313214 None:intergenic 35.0%
! AAATGCCATGCTACTTAAGT+TGG - chr1_2:72313196-72313215 None:intergenic 35.0%
TTGTGTGACATGTCATCTTA+TGG - chr1_2:72313298-72313317 None:intergenic 35.0%
GAATCATGCAAACCTAATCT+GGG + chr1_2:72313319-72313338 Msa0090340:three_prime_UTR 35.0%
! AGGTTTTCTAAGCTACTTGA+GGG - chr1_2:72313583-72313602 None:intergenic 35.0%
! TAGGTTTTCTAAGCTACTTG+AGG - chr1_2:72313584-72313603 None:intergenic 35.0%
TTGGATAGATTAAGTCAGGT+GGG - chr1_2:72313649-72313668 None:intergenic 35.0%
TTTGGATAGATTAAGTCAGG+TGG - chr1_2:72313650-72313669 None:intergenic 35.0%
GATGTACACAAGTTAACTGT+TGG - chr1_2:72313982-72314001 None:intergenic 35.0%
TATCAAACAGGAAGGGCTAA+TGG + chr1_2:72309649-72309668 Msa0090340:intron 40.0%
TTCTCTCTGTTCTTGTTGGT+TGG + chr1_2:72309943-72309962 Msa0090340:CDS 40.0%
! TCTCTCTGTTCTTGTTGGTT+GGG + chr1_2:72309944-72309963 Msa0090340:CDS 40.0%
TGTTATCTTATCGTGACTCG+TGG + chr1_2:72310054-72310073 Msa0090340:intron 40.0%
TTATGCAGATCTCTCGTAGT+TGG + chr1_2:72310207-72310226 Msa0090340:intron 40.0%
TATGCAGATCTCTCGTAGTT+GGG + chr1_2:72310208-72310227 Msa0090340:intron 40.0%
! ACGTTCTTATTCTTCGGGTT+TGG + chr1_2:72310245-72310264 Msa0090340:CDS 40.0%
! TATTCTTCGGGTTTGGACTT+TGG + chr1_2:72310252-72310271 Msa0090340:CDS 40.0%
GATCAAAAGAGTGAACATGG+AGG - chr1_2:72310633-72310652 None:intergenic 40.0%
TTTCTCTCCCATCTTGTTAC+AGG + chr1_2:72311116-72311135 Msa0090340:CDS 40.0%
GATAGAAAATGCCTGCAGAA+TGG - chr1_2:72311216-72311235 None:intergenic 40.0%
TTTGTTCAGTTGGCTACCAT+AGG + chr1_2:72311356-72311375 Msa0090340:intron 40.0%
TTCATCTGCAGCTAAACCTA+TGG - chr1_2:72311375-72311394 None:intergenic 40.0%
AAACAAATGCAGGCAACCAA+AGG - chr1_2:72311507-72311526 None:intergenic 40.0%
TGTACTTCTGCTGCTGTTAT+CGG + chr1_2:72311706-72311725 Msa0090340:CDS 40.0%
TGCTGTATTCAACATTTGGC+AGG + chr1_2:72312010-72312029 Msa0090340:intron 40.0%
GTATTCAACATTTGGCAGGT+TGG + chr1_2:72312014-72312033 Msa0090340:intron 40.0%
CGACTGAAGAAAGGAATGAT+TGG - chr1_2:72312076-72312095 None:intergenic 40.0%
! AGCAAACATGCTTGTTACAG+TGG + chr1_2:72312160-72312179 Msa0090340:three_prime_UTR 40.0%
CTTGTTACAGTGGTTGAGAT+TGG + chr1_2:72312170-72312189 Msa0090340:three_prime_UTR 40.0%
! AGAATGAAAGCTTTGACCCA+AGG - chr1_2:72312220-72312239 None:intergenic 40.0%
ACTGCAAGTACGTGTTGAAA+AGG - chr1_2:72312341-72312360 None:intergenic 40.0%
TCAACACGTACTTGCAGTAA+CGG + chr1_2:72312343-72312362 Msa0090340:three_prime_UTR 40.0%
!! TTGCAGTAACGGATTCTCTA+TGG + chr1_2:72312354-72312373 Msa0090340:three_prime_UTR 40.0%
!! TGCAGTAACGGATTCTCTAT+GGG + chr1_2:72312355-72312374 Msa0090340:three_prime_UTR 40.0%
! AAGAGAGTTTTCCCTTGACA+GGG + chr1_2:72312407-72312426 Msa0090340:three_prime_UTR 40.0%
TTAAGTGTAGGCACATGGAA+TGG - chr1_2:72312474-72312493 None:intergenic 40.0%
TTTCCAATGCTTATTGCTGG+TGG + chr1_2:72312536-72312555 Msa0090340:three_prime_UTR 40.0%
ATTCCACCAGCAATAAGCAT+TGG - chr1_2:72312542-72312561 None:intergenic 40.0%
ACAACCCATACAAACAAGCT+TGG - chr1_2:72312731-72312750 None:intergenic 40.0%
!! GGTCACAATGCAAGAGTATT+GGG - chr1_2:72312783-72312802 None:intergenic 40.0%
! AGGTCACAATGCAAGAGTAT+TGG - chr1_2:72312784-72312803 None:intergenic 40.0%
GAGGATTCAAATCCCCTATA+TGG + chr1_2:72313057-72313076 Msa0090340:three_prime_UTR 40.0%
CGAATCATGCAAACCTAATC+TGG + chr1_2:72313318-72313337 Msa0090340:three_prime_UTR 40.0%
AAACCTAATCTGGGTAGACT+TGG + chr1_2:72313328-72313347 Msa0090340:three_prime_UTR 40.0%
AAACCAAGTCTACCCAGATT+AGG - chr1_2:72313334-72313353 None:intergenic 40.0%
CCATTGCAAGGAAAAGAGTA+TGG - chr1_2:72313360-72313379 None:intergenic 40.0%
! CCATACTCTTTTCCTTGCAA+TGG + chr1_2:72313357-72313376 Msa0090340:three_prime_UTR 40.0%
! TGGTGAACACTTGGATTTTG+AGG - chr1_2:72313551-72313570 None:intergenic 40.0%
TTTCTAAGCTACTTGAGGGT+AGG - chr1_2:72313579-72313598 None:intergenic 40.0%
GCTCATTCAAATCTACGACA+GGG - chr1_2:72313704-72313723 None:intergenic 40.0%
TGCTCATTCAAATCTACGAC+AGG - chr1_2:72313705-72313724 None:intergenic 40.0%
!! TGTTGGAGTATTGTCTACGA+GGG - chr1_2:72313965-72313984 None:intergenic 40.0%
TGGTTCGTTCAACCCTTAAC+TGG + chr1_2:72308961-72308980 Msa0090340:five_prime_UTR 45.0%
!! ATGACCGTTCTCTCTGAGAT+CGG + chr1_2:72309184-72309203 Msa0090340:CDS 45.0%
ATCACCGATCTCAGAGAGAA+CGG - chr1_2:72309191-72309210 None:intergenic 45.0%
AGAGTGTGATATCTGAGCTG+AGG - chr1_2:72309290-72309309 None:intergenic 45.0%
CGAGACAACCTGTTAAGACA+AGG - chr1_2:72309768-72309787 None:intergenic 45.0%
TGGACTTTGGTCCTTGAAAG+AGG + chr1_2:72310265-72310284 Msa0090340:CDS 45.0%
! TTTGATGGACAGGGAATCAG+AGG + chr1_2:72310405-72310424 Msa0090340:intron 45.0%
GAAGTTGAAGCTGAACTGGT+TGG + chr1_2:72310436-72310455 Msa0090340:intron 45.0%
ATGACCGCACATCGTCTTAA+GGG - chr1_2:72310685-72310704 None:intergenic 45.0%
TATGACCGCACATCGTCTTA+AGG - chr1_2:72310686-72310705 None:intergenic 45.0%
CCTGCAGAATGGAAGTGAAA+AGG - chr1_2:72311205-72311224 None:intergenic 45.0%
! CCTTTTCACTTCCATTCTGC+AGG + chr1_2:72311202-72311221 Msa0090340:intron 45.0%
GCTGCAGATGAAAACCCATT+TGG + chr1_2:72311383-72311402 Msa0090340:CDS 45.0%
AGATGAAAACCCATTTGGCG+TGG + chr1_2:72311388-72311407 Msa0090340:CDS 45.0%
TTGGAGGGATTCTGTGAGTT+TGG + chr1_2:72311414-72311433 Msa0090340:intron 45.0%
! ATGAAAGCTTTGACCCAAGG+TGG - chr1_2:72312217-72312236 None:intergenic 45.0%
! GAAGAGAGTTTTCCCTTGAC+AGG + chr1_2:72312406-72312425 Msa0090340:three_prime_UTR 45.0%
! AGAGAGTTTTCCCTTGACAG+GGG + chr1_2:72312408-72312427 Msa0090340:three_prime_UTR 45.0%
TTTCAACAACCCCCTGTCAA+GGG - chr1_2:72312421-72312440 None:intergenic 45.0%
ATTTCAACAACCCCCTGTCA+AGG - chr1_2:72312422-72312441 None:intergenic 45.0%
AGAGGTTAAGTGTAGGCACA+TGG - chr1_2:72312479-72312498 None:intergenic 45.0%
ATTCATTATTCCCCCTGGGA+TGG + chr1_2:72312610-72312629 Msa0090340:three_prime_UTR 45.0%
AGTCCTTATACACCATCCCA+GGG - chr1_2:72312625-72312644 None:intergenic 45.0%
TAGTCCTTATACACCATCCC+AGG - chr1_2:72312626-72312645 None:intergenic 45.0%
AAGATTGGGGTGAGGTAGAA+GGG + chr1_2:72312697-72312716 Msa0090340:three_prime_UTR 45.0%
TCACAACATACAGGCATGGA+CGG - chr1_2:72312809-72312828 None:intergenic 45.0%
TCTGTCACAACATACAGGCA+TGG - chr1_2:72312813-72312832 None:intergenic 45.0%
TGGGAAGTTGGATCCCATAT+AGG - chr1_2:72312865-72312884 None:intergenic 45.0%
TTATGCAAGCAAGCAAGGGA+TGG - chr1_2:72313150-72313169 None:intergenic 45.0%
TCTCACTTGCAGGATCTACT+TGG - chr1_2:72313265-72313284 None:intergenic 45.0%
CTTCTGTCAATCTCACTTGC+AGG - chr1_2:72313275-72313294 None:intergenic 45.0%
TAGGTGAAGTGGTGAACACT+TGG - chr1_2:72313560-72313579 None:intergenic 45.0%
! CGAGTGGATAGTGCAAGTTT+TGG - chr1_2:72313668-72313687 None:intergenic 45.0%
TATCCACTCGCTCTAATCTC+AGG + chr1_2:72313678-72313697 Msa0090340:three_prime_UTR 45.0%
!! GTTGGAGTATTGTCTACGAG+GGG - chr1_2:72313964-72313983 None:intergenic 45.0%
!! CTGTTGGAGTATTGTCTACG+AGG - chr1_2:72313966-72313985 None:intergenic 45.0%
GATCTCAGAGAGAACGGTCA+TGG - chr1_2:72309185-72309204 None:intergenic 50.0%
ATCTGAGCTGAGGTAGCTTG+AGG - chr1_2:72309280-72309299 None:intergenic 50.0%
!! CTGTTAAGACAAGGCGTCGT+GGG - chr1_2:72309759-72309778 None:intergenic 50.0%
GGCTGAAGTTGAAGCTGAAC+TGG + chr1_2:72310432-72310451 Msa0090340:CDS 50.0%
CAGTCCCTTAAGACGATGTG+CGG + chr1_2:72310678-72310697 Msa0090340:intron 50.0%
AACCCATTTGGCGTGGTTCT+TGG + chr1_2:72311395-72311414 Msa0090340:CDS 50.0%
CTCCAAGAACCACGCCAAAT+GGG - chr1_2:72311400-72311419 None:intergenic 50.0%
CATTTGGCGTGGTTCTTGGA+GGG + chr1_2:72311399-72311418 Msa0090340:CDS 50.0%
ACTTCTGCTGCTGTTATCGG+AGG + chr1_2:72311709-72311728 Msa0090340:CDS 50.0%
CTTCTGCTGCTGTTATCGGA+GGG + chr1_2:72311710-72311729 Msa0090340:CDS 50.0%
! ATTTGGCAGGTTGGACTCTC+AGG + chr1_2:72312023-72312042 Msa0090340:intron 50.0%
! GGTGGAAAGGCAAGCTCTTT+TGG - chr1_2:72312199-72312218 None:intergenic 50.0%
AAGAGCTTGCCTTTCCACCT+TGG + chr1_2:72312200-72312219 Msa0090340:three_prime_UTR 50.0%
AGAGCTTGCCTTTCCACCTT+GGG + chr1_2:72312201-72312220 Msa0090340:three_prime_UTR 50.0%
! AGCTTTGACCCAAGGTGGAA+AGG - chr1_2:72312212-72312231 None:intergenic 50.0%
! GAGAGTTTTCCCTTGACAGG+GGG + chr1_2:72312409-72312428 Msa0090340:three_prime_UTR 50.0%
TCCTTATACACCATCCCAGG+GGG - chr1_2:72312623-72312642 None:intergenic 50.0%
GTCCTTATACACCATCCCAG+GGG - chr1_2:72312624-72312643 None:intergenic 50.0%
ACTGTGAAAATGACCCTGCC+TGG + chr1_2:72312654-72312673 Msa0090340:three_prime_UTR 50.0%
CTGTGAAAATGACCCTGCCT+GGG + chr1_2:72312655-72312674 Msa0090340:three_prime_UTR 50.0%
TACTTCCTACAACCCAGGCA+GGG - chr1_2:72312670-72312689 None:intergenic 50.0%
TTACTTCCTACAACCCAGGC+AGG - chr1_2:72312671-72312690 None:intergenic 50.0%
CAAGATTGGGGTGAGGTAGA+AGG + chr1_2:72312696-72312715 Msa0090340:three_prime_UTR 50.0%
AGATTGGGGTGAGGTAGAAG+GGG + chr1_2:72312698-72312717 Msa0090340:three_prime_UTR 50.0%
ACATACAGGCATGGACGGAA+AGG - chr1_2:72312804-72312823 None:intergenic 50.0%
TGGCTTGATGTTGGGGACAT+CGG - chr1_2:72313130-72313149 None:intergenic 50.0%
CAAGGGATGGCTTGATGTTG+GGG - chr1_2:72313137-72313156 None:intergenic 50.0%
GCAAGGGATGGCTTGATGTT+GGG - chr1_2:72313138-72313157 None:intergenic 50.0%
AGCAAGGGATGGCTTGATGT+TGG - chr1_2:72313139-72313158 None:intergenic 50.0%
!! CTTAAGTTGGGCTCCAGTGA+AGG - chr1_2:72313183-72313202 None:intergenic 50.0%
GGAGCCCAACTTAAGTAGCA+TGG + chr1_2:72313188-72313207 Msa0090340:three_prime_UTR 50.0%
CTACTTGAGGGTAGGTGAAG+TGG - chr1_2:72313571-72313590 None:intergenic 50.0%
AGCTGAGGTAGCTTGAGGTG+AGG - chr1_2:72309275-72309294 None:intergenic 55.0%
!! CCTGTTAAGACAAGGCGTCG+TGG - chr1_2:72309760-72309779 None:intergenic 55.0%
CCACGACGCCTTGTCTTAAC+AGG + chr1_2:72309757-72309776 Msa0090340:CDS 55.0%
TGGTTGGGCTGCTCCAAATC+TGG + chr1_2:72309959-72309978 Msa0090340:CDS 55.0%
GGACAGGGAATCAGAGGAGT+TGG + chr1_2:72310411-72310430 Msa0090340:intron 55.0%
TGAATGGGGTGACAAGAGCC+AGG + chr1_2:72311247-72311266 Msa0090340:CDS 55.0%
CCTCCAAGAACCACGCCAAA+TGG - chr1_2:72311401-72311420 None:intergenic 55.0%
CCATTTGGCGTGGTTCTTGG+AGG + chr1_2:72311398-72311417 Msa0090340:CDS 55.0%
TCCCCCTGGGATGGTGTATA+AGG + chr1_2:72312619-72312638 Msa0090340:three_prime_UTR 55.0%
AATGACCCTGCCTGGGTTGT+AGG + chr1_2:72312662-72312681 Msa0090340:three_prime_UTR 55.0%
GGCTTGATGTTGGGGACATC+GGG - chr1_2:72313129-72313148 None:intergenic 55.0%
GTTGGGCTCCAGTGAAGGAA+AGG - chr1_2:72313178-72313197 None:intergenic 55.0%
GGGGTGACAAGAGCCAGGTA+AGG + chr1_2:72311252-72311271 Msa0090340:intron 60.0%
! TGGCAGGTTGGACTCTCAGG+TGG + chr1_2:72312026-72312045 Msa0090340:intron 60.0%
GGGCCTGAGATTAGAGCGAG+TGG - chr1_2:72313684-72313703 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 72308954 72314003 72308954 ID=Msa0090340;Name=Msa0090340
chr1_2 mRNA 72308954 72314003 72308954 ID=Msa0090340-mRNA-1;Parent=Msa0090340;Name=Msa0090340-mRNA-1;_AED=0.28;_eAED=0.28;_QI=95|1|1|1|0.91|0.84|13|1867|228
chr1_2 exon 72308954 72309066 72308954 ID=Msa0090340-mRNA-1:exon:25119;Parent=Msa0090340-mRNA-1
chr1_2 exon 72309163 72309231 72309163 ID=Msa0090340-mRNA-1:exon:25120;Parent=Msa0090340-mRNA-1
chr1_2 exon 72309739 72309798 72309739 ID=Msa0090340-mRNA-1:exon:25121;Parent=Msa0090340-mRNA-1
chr1_2 exon 72309933 72309980 72309933 ID=Msa0090340-mRNA-1:exon:25122;Parent=Msa0090340-mRNA-1
chr1_2 exon 72310215 72310303 72310215 ID=Msa0090340-mRNA-1:exon:25123;Parent=Msa0090340-mRNA-1
chr1_2 exon 72310417 72310453 72310417 ID=Msa0090340-mRNA-1:exon:25124;Parent=Msa0090340-mRNA-1
chr1_2 exon 72310533 72310580 72310533 ID=Msa0090340-mRNA-1:exon:25125;Parent=Msa0090340-mRNA-1
chr1_2 exon 72311069 72311137 72311069 ID=Msa0090340-mRNA-1:exon:25126;Parent=Msa0090340-mRNA-1
chr1_2 exon 72311224 72311268 72311224 ID=Msa0090340-mRNA-1:exon:25127;Parent=Msa0090340-mRNA-1
chr1_2 exon 72311365 72311426 72311365 ID=Msa0090340-mRNA-1:exon:25128;Parent=Msa0090340-mRNA-1
chr1_2 exon 72311693 72311765 72311693 ID=Msa0090340-mRNA-1:exon:25129;Parent=Msa0090340-mRNA-1
chr1_2 exon 72312032 72313007 72312032 ID=Msa0090340-mRNA-1:exon:25130;Parent=Msa0090340-mRNA-1
chr1_2 exon 72313044 72314003 72313044 ID=Msa0090340-mRNA-1:exon:25131;Parent=Msa0090340-mRNA-1
chr1_2 five_prime_UTR 72308954 72309048 72308954 ID=Msa0090340-mRNA-1:five_prime_utr;Parent=Msa0090340-mRNA-1
chr1_2 CDS 72309049 72309066 72309049 ID=Msa0090340-mRNA-1:cds;Parent=Msa0090340-mRNA-1
chr1_2 CDS 72309163 72309231 72309163 ID=Msa0090340-mRNA-1:cds;Parent=Msa0090340-mRNA-1
chr1_2 CDS 72309739 72309798 72309739 ID=Msa0090340-mRNA-1:cds;Parent=Msa0090340-mRNA-1
chr1_2 CDS 72309933 72309980 72309933 ID=Msa0090340-mRNA-1:cds;Parent=Msa0090340-mRNA-1
chr1_2 CDS 72310215 72310303 72310215 ID=Msa0090340-mRNA-1:cds;Parent=Msa0090340-mRNA-1
chr1_2 CDS 72310417 72310453 72310417 ID=Msa0090340-mRNA-1:cds;Parent=Msa0090340-mRNA-1
chr1_2 CDS 72310533 72310580 72310533 ID=Msa0090340-mRNA-1:cds;Parent=Msa0090340-mRNA-1
chr1_2 CDS 72311069 72311137 72311069 ID=Msa0090340-mRNA-1:cds;Parent=Msa0090340-mRNA-1
chr1_2 CDS 72311224 72311268 72311224 ID=Msa0090340-mRNA-1:cds;Parent=Msa0090340-mRNA-1
chr1_2 CDS 72311365 72311426 72311365 ID=Msa0090340-mRNA-1:cds;Parent=Msa0090340-mRNA-1
chr1_2 CDS 72311693 72311765 72311693 ID=Msa0090340-mRNA-1:cds;Parent=Msa0090340-mRNA-1
chr1_2 CDS 72312032 72312100 72312032 ID=Msa0090340-mRNA-1:cds;Parent=Msa0090340-mRNA-1
chr1_2 three_prime_UTR 72312101 72313007 72312101 ID=Msa0090340-mRNA-1:three_prime_utr;Parent=Msa0090340-mRNA-1
chr1_2 three_prime_UTR 72313044 72314003 72313044 ID=Msa0090340-mRNA-1:three_prime_utr;Parent=Msa0090340-mRNA-1
Gene Sequence

>Msa0090340

ATGAGCTCAATTGTTCAGGGTTTTACAAAGTCACTCGCCATGACCGTTCTCTCTGAGATCGGTGATAAGACTTTTTTTGCAGCTGCGATACTGGCTATGCGACACCCACGACGCCTTGTCTTAACAGGTTGTCTCGCAGCTTTGATAGTGATGACAATTCTCTCTGTTCTTGTTGGTTGGGCTGCTCCAAATCTGATCTCTCGTAGTTGGGCTCATCACATTACGACGTTCTTATTCTTCGGGTTTGGACTTTGGTCCTTGAAAGAGGCTATATTTGGAGAAGGGGAATCAGAGGAGTTGGCTGAAGTTGAAGCTGAACTGGACAAAGATTGGAAGGCTAAAAATGGAACTACAAAAGATACCAAAAAGGTTGATGATGCCACAAAAAAACATAAACGGCCATTTTTATCTCAGTTTTTCTCTCCCATCTTGTTACAGGCATTTTCTATCACTTTTTTTGGTGAATGGGGTGACAAGAGCCAGTTGGCTACCATAGGTTTAGCTGCAGATGAAAACCCATTTGGCGTGGTTCTTGGAGGGATTCTGGGGCACGCGTTGTGTACTTCTGCTGCTGTTATCGGAGGGAAGAGTTTAGCATCTCAGATTTCTGAAAAAGTGGTTGGACTCTCAGGTGGAATTCTTTTTATTGTTTTTGGTATCCAATCATTCCTTTCTTCAGTCGAATGA
Protein sequence

>Msa0090340

MSSIVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLTGCLAALIVMTILSVLVGWAAPNLISRSWAHHITTFLFFGFGLWSLKEAIFGEGESEELAEVEAELDKDWKAKNGTTKDTKKVDDATKKHKRPFLSQFFSPILLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGILGHALCTSAAVIGGKSLASQISEKVVGLSGGILFIVFGIQSFLSSVE*