Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682050 | XP_003606349.2 | 94.891 | 137 | 4 | 1 | 1 | 137 | 1 | 134 | 4.28e-83 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682050 | sp|E3VXF2|SGO1_ORYSJ | 40.000 | 125 | 59 | 5 | 21 | 142 | 32 | 143 | 1.29e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682050 | G7JNB6 | 94.891 | 137 | 4 | 1 | 1 | 137 | 1 | 134 | 2.05e-83 | 257 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa0682050 | 0.800564 | 1.358481e-48 | -8.615850e-47 |
| Msa0076250 | Msa0682050 | 0.807759 | 4.321222e-50 | -8.615850e-47 |
| Msa0662240 | Msa0682050 | 0.864295 | 1.348010e-64 | -8.615850e-47 |
| Msa0682050 | Msa0739730 | 0.809981 | 1.446510e-50 | -8.615850e-47 |
| Msa0682050 | Msa0816150 | 0.811497 | 6.795761e-51 | -8.615850e-47 |
| Msa0682050 | Msa0853660 | 0.826463 | 2.675771e-54 | -8.615850e-47 |
| Msa0682050 | Msa0964840 | 0.823856 | 1.105850e-53 | -8.615850e-47 |
| Msa0682050 | Msa0967380 | 0.808668 | 2.765517e-50 | -8.615850e-47 |
| Msa0682050 | Msa1366340 | 0.814518 | 1.479343e-51 | -8.615850e-47 |
| Msa0682050 | Msa1395190 | 0.801586 | 8.395630e-49 | -8.615850e-47 |
| Msa0682050 | Msa1438250 | 0.816846 | 4.480178e-52 | -8.615850e-47 |
| Msa0225860 | Msa0682050 | 0.804602 | 1.996643e-49 | -8.615850e-47 |
| Msa0261340 | Msa0682050 | 0.810314 | 1.226036e-50 | -8.615850e-47 |
| Msa0527790 | Msa0682050 | 0.800457 | 1.428271e-48 | -8.615850e-47 |
| Msa0546500 | Msa0682050 | 0.807592 | 4.688738e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682050 | MtrunA17_Chr4g0028171 | 94.891 | 137 | 4 | 1 | 1 | 137 | 1 | 134 | 3.94e-87 | 257 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682050 | AT3G44960.3 | 41.935 | 124 | 66 | 2 | 8 | 131 | 2 | 119 | 1.64e-19 | 82.8 |
| Msa0682050 | AT3G44960.1 | 41.935 | 124 | 66 | 2 | 8 | 131 | 2 | 119 | 1.65e-19 | 82.8 |
| Msa0682050 | AT3G44960.2 | 41.935 | 124 | 66 | 2 | 8 | 131 | 2 | 119 | 1.73e-19 | 82.8 |
| Msa0682050 | AT5G04320.4 | 49.367 | 79 | 37 | 1 | 51 | 129 | 46 | 121 | 1.75e-14 | 70.1 |
| Msa0682050 | AT5G04320.2 | 49.367 | 79 | 37 | 1 | 51 | 129 | 46 | 121 | 1.75e-14 | 70.1 |
| Msa0682050 | AT5G04320.5 | 49.367 | 79 | 37 | 1 | 51 | 129 | 46 | 121 | 1.75e-14 | 70.1 |
| Msa0682050 | AT5G04320.3 | 49.367 | 79 | 37 | 1 | 51 | 129 | 22 | 97 | 2.06e-14 | 70.1 |
| Msa0682050 | AT5G04320.1 | 50.000 | 72 | 33 | 1 | 58 | 129 | 2 | 70 | 1.35e-13 | 67.4 |
Find 25 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAGAGCTGCTTTGATTAA+TGG | 0.224956 | 4_4:-43031887 | Msa0682050:CDS |
| TAATAGATGAACTTCAATAA+TGG | 0.261899 | 4_4:-43031696 | Msa0682050:intron |
| AGAAGTTGCAAATGCAAAAC+TGG | 0.370105 | 4_4:-43032584 | Msa0682050:CDS |
| AATAGATGAACTTCAATAAT+GGG | 0.375532 | 4_4:-43031695 | Msa0682050:intron |
| GCCGACGGAGAATCAGAAAA+TGG | 0.397671 | 4_4:-43033250 | Msa0682050:CDS |
| TACTGCTAACATGAGACTAT+TGG | 0.402163 | 4_4:+43032548 | None:intergenic |
| TTACGAATTGAAAGAGAAGA+AGG | 0.437313 | 4_4:+43033366 | None:intergenic |
| AAGGAGTGAAGAGGAAGCAA+AGG | 0.438648 | 4_4:+43033385 | None:intergenic |
| TGAAGAGGAAGCAAAGGAAA+AGG | 0.440836 | 4_4:+43033391 | None:intergenic |
| ATTGTGTAAGAAGTAGTGTT+TGG | 0.449611 | 4_4:-43031659 | Msa0682050:CDS |
| TTTACAGTTACAACTTATAA+CGG | 0.454297 | 4_4:-43033286 | Msa0682050:five_prime_UTR |
| TTGTGTAAGAAGTAGTGTTT+GGG | 0.455761 | 4_4:-43031658 | Msa0682050:CDS |
| TGAACAGTAAAATGATAGAA+AGG | 0.482472 | 4_4:-43032644 | Msa0682050:CDS |
| TACCTTGAGGAGTTGTTGAA+TGG | 0.485020 | 4_4:+43033110 | None:intergenic |
| AGGAAAAGGAAAGAAAAGAA+AGG | 0.497007 | 4_4:+43033405 | None:intergenic |
| TGGAAACAGCTTCAAAATGC+AGG | 0.529427 | 4_4:-43031867 | Msa0682050:intron |
| TGCAGGAGCTTAACTTGGGG+AGG | 0.533630 | 4_4:-43032056 | Msa0682050:intron |
| GCAGGAGCTTAACTTGGGGA+GGG | 0.566011 | 4_4:-43032055 | Msa0682050:intron |
| AAAGAGAAGAAGGAGTGAAG+AGG | 0.573900 | 4_4:+43033376 | None:intergenic |
| TTCCATTCAACAACTCCTCA+AGG | 0.584322 | 4_4:-43033112 | Msa0682050:intron |
| AAGGATACTTTCTATCTGCA+AGG | 0.606472 | 4_4:+43032978 | None:intergenic |
| AGTAAAATGATAGAAAGGAG+TGG | 0.612385 | 4_4:-43032639 | Msa0682050:CDS |
| AAAATGGCGAAGAAATCGAT+CGG | 0.644350 | 4_4:-43033234 | Msa0682050:CDS |
| GATACTTTCTATCTGCAAGG+AGG | 0.699795 | 4_4:+43032981 | None:intergenic |
| GGTACTAACTAACATGCCGA+CGG | 0.717552 | 4_4:-43033265 | Msa0682050:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATATACTAATAAAAG+TGG | - | chr4_4:43032834-43032853 | Msa0682050:intron | 10.0% |
| !! | AATATATATACTAATAAAAG+TGG | - | chr4_4:43032834-43032853 | Msa0682050:intron | 10.0% |
| !! | ATAAATTTGACAAATATGTT+AGG | - | chr4_4:43032859-43032878 | Msa0682050:intron | 15.0% |
| !! | TAAATTTGACAAATATGTTA+GGG | - | chr4_4:43032860-43032879 | Msa0682050:intron | 15.0% |
| !!! | AAAATTGATTTGAATATGTT+TGG | + | chr4_4:43033345-43033364 | None:intergenic | 15.0% |
| !! | ATAAATTTGACAAATATGTT+AGG | - | chr4_4:43032859-43032878 | Msa0682050:intron | 15.0% |
| !! | TAAATTTGACAAATATGTTA+GGG | - | chr4_4:43032860-43032879 | Msa0682050:intron | 15.0% |
| !!! | AAAATTGATTTGAATATGTT+TGG | + | chr4_4:43033345-43033364 | None:intergenic | 15.0% |
| !! | TTTACAGTTACAACTTATAA+CGG | - | chr4_4:43031782-43031801 | Msa0682050:intron | 20.0% |
| !!! | TTATTAGTTTTTGTTTGTGA+AGG | - | chr4_4:43032349-43032368 | Msa0682050:intron | 20.0% |
| !!! | AATATATCATATTGACTTTG+AGG | - | chr4_4:43032952-43032971 | Msa0682050:intron | 20.0% |
| !!! | ATATATCATATTGACTTTGA+GGG | - | chr4_4:43032953-43032972 | Msa0682050:intron | 20.0% |
| !! | TAATAGATGAACTTCAATAA+TGG | - | chr4_4:43033372-43033391 | Msa0682050:five_prime_UTR | 20.0% |
| !! | AATAGATGAACTTCAATAAT+GGG | - | chr4_4:43033373-43033392 | Msa0682050:five_prime_UTR | 20.0% |
| !! | TTTACAGTTACAACTTATAA+CGG | - | chr4_4:43031782-43031801 | Msa0682050:intron | 20.0% |
| !!! | TTATTAGTTTTTGTTTGTGA+AGG | - | chr4_4:43032349-43032368 | Msa0682050:intron | 20.0% |
| !!! | AATATATCATATTGACTTTG+AGG | - | chr4_4:43032952-43032971 | Msa0682050:intron | 20.0% |
| !!! | ATATATCATATTGACTTTGA+GGG | - | chr4_4:43032953-43032972 | Msa0682050:intron | 20.0% |
| !! | TAATAGATGAACTTCAATAA+TGG | - | chr4_4:43033372-43033391 | Msa0682050:five_prime_UTR | 20.0% |
| !! | AATAGATGAACTTCAATAAT+GGG | - | chr4_4:43033373-43033392 | Msa0682050:five_prime_UTR | 20.0% |
| ! | AAGTCTCGTATTATTAATGA+AGG | + | chr4_4:43032112-43032131 | None:intergenic | 25.0% |
| ! | CATACTCAAATAAACAAACA+CGG | + | chr4_4:43032246-43032265 | None:intergenic | 25.0% |
| ! | TTGTTTATTTGAGTATGTGT+TGG | - | chr4_4:43032249-43032268 | Msa0682050:intron | 25.0% |
| ! | AAAATATTGAAATTGCGTTG+TGG | - | chr4_4:43032285-43032304 | Msa0682050:intron | 25.0% |
| ! | TTACTGTTCAAACTAAATCA+AGG | + | chr4_4:43032414-43032433 | None:intergenic | 25.0% |
| ! | TGAACAGTAAAATGATAGAA+AGG | - | chr4_4:43032424-43032443 | Msa0682050:intron | 25.0% |
| ! | GATGATAATAATAGAGAAGT+TGG | + | chr4_4:43032659-43032678 | None:intergenic | 25.0% |
| ! | TCTATTATTATCATCAGTGT+CGG | - | chr4_4:43032664-43032683 | Msa0682050:intron | 25.0% |
| ! | CAAAATTGAAGATGATTAGA+GGG | + | chr4_4:43032721-43032740 | None:intergenic | 25.0% |
| ! | ACAAAATTGAAGATGATTAG+AGG | + | chr4_4:43032722-43032741 | None:intergenic | 25.0% |
| !! | AATGCAATTTTGTAAGTTGT+AGG | + | chr4_4:43032774-43032793 | None:intergenic | 25.0% |
| !!! | CATTGTTTTAGTTCTATGTA+GGG | - | chr4_4:43032790-43032809 | Msa0682050:intron | 25.0% |
| !! | TAGTGATTTTATGTTTCTTG+CGG | - | chr4_4:43032982-43033001 | Msa0682050:intron | 25.0% |
| ! | GAAAAGAAAAAGAAATTTGG+AGG | + | chr4_4:43033055-43033074 | None:intergenic | 25.0% |
| ! | AGGGAAAAGAAAAAGAAATT+TGG | + | chr4_4:43033058-43033077 | None:intergenic | 25.0% |
| !! | TAACCAATTCAAGTTCAAAA+GGG | + | chr4_4:43033077-43033096 | None:intergenic | 25.0% |
| !! | ATAACCAATTCAAGTTCAAA+AGG | + | chr4_4:43033078-43033097 | None:intergenic | 25.0% |
| !!! | TTTGGTTAAAAGTGTGTTTT+AGG | - | chr4_4:43033243-43033262 | Msa0682050:CDS | 25.0% |
| ! | AAGTCTCGTATTATTAATGA+AGG | + | chr4_4:43032112-43032131 | None:intergenic | 25.0% |
| ! | CATACTCAAATAAACAAACA+CGG | + | chr4_4:43032246-43032265 | None:intergenic | 25.0% |
| ! | TTGTTTATTTGAGTATGTGT+TGG | - | chr4_4:43032249-43032268 | Msa0682050:intron | 25.0% |
| ! | AAAATATTGAAATTGCGTTG+TGG | - | chr4_4:43032285-43032304 | Msa0682050:intron | 25.0% |
| ! | TTACTGTTCAAACTAAATCA+AGG | + | chr4_4:43032414-43032433 | None:intergenic | 25.0% |
| ! | TGAACAGTAAAATGATAGAA+AGG | - | chr4_4:43032424-43032443 | Msa0682050:intron | 25.0% |
| ! | GATGATAATAATAGAGAAGT+TGG | + | chr4_4:43032659-43032678 | None:intergenic | 25.0% |
| ! | TCTATTATTATCATCAGTGT+CGG | - | chr4_4:43032664-43032683 | Msa0682050:intron | 25.0% |
| ! | CAAAATTGAAGATGATTAGA+GGG | + | chr4_4:43032721-43032740 | None:intergenic | 25.0% |
| ! | ACAAAATTGAAGATGATTAG+AGG | + | chr4_4:43032722-43032741 | None:intergenic | 25.0% |
| !! | AATGCAATTTTGTAAGTTGT+AGG | + | chr4_4:43032774-43032793 | None:intergenic | 25.0% |
| !!! | CATTGTTTTAGTTCTATGTA+GGG | - | chr4_4:43032790-43032809 | Msa0682050:intron | 25.0% |
| !! | TAGTGATTTTATGTTTCTTG+CGG | - | chr4_4:43032982-43033001 | Msa0682050:intron | 25.0% |
| ! | GAAAAGAAAAAGAAATTTGG+AGG | + | chr4_4:43033055-43033074 | None:intergenic | 25.0% |
| ! | AGGGAAAAGAAAAAGAAATT+TGG | + | chr4_4:43033058-43033077 | None:intergenic | 25.0% |
| !! | TAACCAATTCAAGTTCAAAA+GGG | + | chr4_4:43033077-43033096 | None:intergenic | 25.0% |
| !! | ATAACCAATTCAAGTTCAAA+AGG | + | chr4_4:43033078-43033097 | None:intergenic | 25.0% |
| !!! | TTTGGTTAAAAGTGTGTTTT+AGG | - | chr4_4:43033243-43033262 | Msa0682050:CDS | 25.0% |
| AGGAAAAGGAAAGAAAAGAA+AGG | + | chr4_4:43031666-43031685 | None:intergenic | 30.0% | |
| TTACGAATTGAAAGAGAAGA+AGG | + | chr4_4:43031705-43031724 | None:intergenic | 30.0% | |
| CTTAATGCGAAAAAGACTTT+CGG | - | chr4_4:43031860-43031879 | Msa0682050:intron | 30.0% | |
| TGTATGTTATTGTTACCTTG+AGG | + | chr4_4:43031974-43031993 | None:intergenic | 30.0% | |
| AACAGAAACTCAATTACACA+AGG | + | chr4_4:43032312-43032331 | None:intergenic | 30.0% | |
| ATTGAGTTTCTGTTTCATGA+AGG | - | chr4_4:43032318-43032337 | Msa0682050:intron | 30.0% | |
| TTGAGTTTCTGTTTCATGAA+GGG | - | chr4_4:43032319-43032338 | Msa0682050:intron | 30.0% | |
| AGTAAAATGATAGAAAGGAG+TGG | - | chr4_4:43032429-43032448 | Msa0682050:intron | 30.0% | |
| !!! | GCATTGTTTTAGTTCTATGT+AGG | - | chr4_4:43032789-43032808 | Msa0682050:intron | 30.0% |
| AGTAGAGATAGTGATAATTG+AGG | - | chr4_4:43032897-43032916 | Msa0682050:intron | 30.0% | |
| GTAGAGATAGTGATAATTGA+GGG | - | chr4_4:43032898-43032917 | Msa0682050:intron | 30.0% | |
| TAGAGATAGTGATAATTGAG+GGG | - | chr4_4:43032899-43032918 | Msa0682050:intron | 30.0% | |
| ! | TTTCCCTTTTGAACTTGAAT+TGG | - | chr4_4:43033071-43033090 | Msa0682050:intron | 30.0% |
| ! | CACACTTTTAACCAAAAATC+AGG | + | chr4_4:43033239-43033258 | None:intergenic | 30.0% |
| ATTGTGTAAGAAGTAGTGTT+TGG | - | chr4_4:43033409-43033428 | Msa0682050:five_prime_UTR | 30.0% | |
| TTGTGTAAGAAGTAGTGTTT+GGG | - | chr4_4:43033410-43033429 | Msa0682050:five_prime_UTR | 30.0% | |
| AGGAAAAGGAAAGAAAAGAA+AGG | + | chr4_4:43031666-43031685 | None:intergenic | 30.0% | |
| TTACGAATTGAAAGAGAAGA+AGG | + | chr4_4:43031705-43031724 | None:intergenic | 30.0% | |
| CTTAATGCGAAAAAGACTTT+CGG | - | chr4_4:43031860-43031879 | Msa0682050:intron | 30.0% | |
| TGTATGTTATTGTTACCTTG+AGG | + | chr4_4:43031974-43031993 | None:intergenic | 30.0% | |
| AACAGAAACTCAATTACACA+AGG | + | chr4_4:43032312-43032331 | None:intergenic | 30.0% | |
| ATTGAGTTTCTGTTTCATGA+AGG | - | chr4_4:43032318-43032337 | Msa0682050:intron | 30.0% | |
| TTGAGTTTCTGTTTCATGAA+GGG | - | chr4_4:43032319-43032338 | Msa0682050:intron | 30.0% | |
| AGTAAAATGATAGAAAGGAG+TGG | - | chr4_4:43032429-43032448 | Msa0682050:intron | 30.0% | |
| !!! | GCATTGTTTTAGTTCTATGT+AGG | - | chr4_4:43032789-43032808 | Msa0682050:intron | 30.0% |
| AGTAGAGATAGTGATAATTG+AGG | - | chr4_4:43032897-43032916 | Msa0682050:intron | 30.0% | |
| GTAGAGATAGTGATAATTGA+GGG | - | chr4_4:43032898-43032917 | Msa0682050:intron | 30.0% | |
| TAGAGATAGTGATAATTGAG+GGG | - | chr4_4:43032899-43032918 | Msa0682050:intron | 30.0% | |
| ! | TTTCCCTTTTGAACTTGAAT+TGG | - | chr4_4:43033071-43033090 | Msa0682050:intron | 30.0% |
| ! | CACACTTTTAACCAAAAATC+AGG | + | chr4_4:43033239-43033258 | None:intergenic | 30.0% |
| ATTGTGTAAGAAGTAGTGTT+TGG | - | chr4_4:43033409-43033428 | Msa0682050:five_prime_UTR | 30.0% | |
| TTGTGTAAGAAGTAGTGTTT+GGG | - | chr4_4:43033410-43033429 | Msa0682050:five_prime_UTR | 30.0% | |
| AAAATGGCGAAGAAATCGAT+CGG | - | chr4_4:43031834-43031853 | Msa0682050:intron | 35.0% | |
| AAGGATACTTTCTATCTGCA+AGG | + | chr4_4:43032093-43032112 | None:intergenic | 35.0% | |
| TCAAATAAACAAACACGGAG+TGG | + | chr4_4:43032241-43032260 | None:intergenic | 35.0% | |
| AGAAGTTGCAAATGCAAAAC+TGG | - | chr4_4:43032484-43032503 | Msa0682050:intron | 35.0% | |
| TACTGCTAACATGAGACTAT+TGG | + | chr4_4:43032523-43032542 | None:intergenic | 35.0% | |
| TTCAATGTCATCACATGTGT+CGG | + | chr4_4:43032631-43032650 | None:intergenic | 35.0% | |
| ! | ATTTTGCAGGAGCTTAACTT+GGG | - | chr4_4:43033008-43033027 | Msa0682050:intron | 35.0% |
| !! | GTGTTTTTCAGCCTGATTTT+TGG | - | chr4_4:43033225-43033244 | Msa0682050:CDS | 35.0% |
| TGCATGACAAAAATCACGTT+TGG | - | chr4_4:43033269-43033288 | Msa0682050:exon | 35.0% | |
| ATGACAAAAATCACGTTTGG+AGG | - | chr4_4:43033272-43033291 | Msa0682050:exon | 35.0% | |
| TTTGGGAAGAAAATGTGTAG+CGG | - | chr4_4:43033427-43033446 | Msa0682050:five_prime_UTR | 35.0% | |
| AAAATGGCGAAGAAATCGAT+CGG | - | chr4_4:43031834-43031853 | Msa0682050:intron | 35.0% | |
| AAGGATACTTTCTATCTGCA+AGG | + | chr4_4:43032093-43032112 | None:intergenic | 35.0% | |
| TCAAATAAACAAACACGGAG+TGG | + | chr4_4:43032241-43032260 | None:intergenic | 35.0% | |
| AGAAGTTGCAAATGCAAAAC+TGG | - | chr4_4:43032484-43032503 | Msa0682050:intron | 35.0% | |
| TACTGCTAACATGAGACTAT+TGG | + | chr4_4:43032523-43032542 | None:intergenic | 35.0% | |
| TTCAATGTCATCACATGTGT+CGG | + | chr4_4:43032631-43032650 | None:intergenic | 35.0% | |
| ! | ATTTTGCAGGAGCTTAACTT+GGG | - | chr4_4:43033008-43033027 | Msa0682050:intron | 35.0% |
| !! | GTGTTTTTCAGCCTGATTTT+TGG | - | chr4_4:43033225-43033244 | Msa0682050:CDS | 35.0% |
| TGCATGACAAAAATCACGTT+TGG | - | chr4_4:43033269-43033288 | Msa0682050:exon | 35.0% | |
| ATGACAAAAATCACGTTTGG+AGG | - | chr4_4:43033272-43033291 | Msa0682050:exon | 35.0% | |
| TGAAGAGGAAGCAAAGGAAA+AGG | + | chr4_4:43031680-43031699 | None:intergenic | 40.0% | |
| AAAGAGAAGAAGGAGTGAAG+AGG | + | chr4_4:43031695-43031714 | None:intergenic | 40.0% | |
| TTCCATTCAACAACTCCTCA+AGG | - | chr4_4:43031956-43031975 | Msa0682050:intron | 40.0% | |
| TACCTTGAGGAGTTGTTGAA+TGG | + | chr4_4:43031961-43031980 | None:intergenic | 40.0% | |
| CTGTTGCTGAATTTCGTTAC+AGG | - | chr4_4:43032045-43032064 | Msa0682050:intron | 40.0% | |
| GATACTTTCTATCTGCAAGG+AGG | + | chr4_4:43032090-43032109 | None:intergenic | 40.0% | |
| TACTCGTTGTTACAGTCTAG+TGG | - | chr4_4:43032158-43032177 | Msa0682050:intron | 40.0% | |
| AGTGGAAAATGTAGTGACTC+AGG | + | chr4_4:43032223-43032242 | None:intergenic | 40.0% | |
| ACGCCTTTCATAAGAAGTCT+CGG | + | chr4_4:43032576-43032595 | None:intergenic | 40.0% | |
| GACTAAAAGCCTATGAAGCA+CGG | + | chr4_4:43032699-43032718 | None:intergenic | 40.0% | |
| GTTCTTCTATACCCGTCTTT+CGG | - | chr4_4:43032747-43032766 | Msa0682050:intron | 40.0% | |
| TAAGTTGTAGGACCGAAAGA+CGG | + | chr4_4:43032762-43032781 | None:intergenic | 40.0% | |
| GACAAATATGTTAGGGACTC+TGG | - | chr4_4:43032867-43032886 | Msa0682050:intron | 40.0% | |
| TGATAATTGAGGGGCTGAAT+GGG | - | chr4_4:43032908-43032927 | Msa0682050:intron | 40.0% | |
| !! | TCATATTGACTTTGAGGGTG+AGG | - | chr4_4:43032958-43032977 | Msa0682050:intron | 40.0% |
| !! | TTTCTTGCGGTTGATTTTGC+AGG | - | chr4_4:43032995-43033014 | Msa0682050:CDS | 40.0% |
| ! | GATTTTGCAGGAGCTTAACT+TGG | - | chr4_4:43033007-43033026 | Msa0682050:intron | 40.0% |
| !! | TTTTGCAGGAGCTTAACTTG+GGG | - | chr4_4:43033009-43033028 | Msa0682050:intron | 40.0% |
| ! | TGGAGAGCTGCTTTGATTAA+TGG | - | chr4_4:43033181-43033200 | Msa0682050:CDS | 40.0% |
| TGGAAACAGCTTCAAAATGC+AGG | - | chr4_4:43033201-43033220 | Msa0682050:CDS | 40.0% | |
| TGAAGAGGAAGCAAAGGAAA+AGG | + | chr4_4:43031680-43031699 | None:intergenic | 40.0% | |
| AAAGAGAAGAAGGAGTGAAG+AGG | + | chr4_4:43031695-43031714 | None:intergenic | 40.0% | |
| TTCCATTCAACAACTCCTCA+AGG | - | chr4_4:43031956-43031975 | Msa0682050:intron | 40.0% | |
| TACCTTGAGGAGTTGTTGAA+TGG | + | chr4_4:43031961-43031980 | None:intergenic | 40.0% | |
| CTGTTGCTGAATTTCGTTAC+AGG | - | chr4_4:43032045-43032064 | Msa0682050:intron | 40.0% | |
| GATACTTTCTATCTGCAAGG+AGG | + | chr4_4:43032090-43032109 | None:intergenic | 40.0% | |
| TACTCGTTGTTACAGTCTAG+TGG | - | chr4_4:43032158-43032177 | Msa0682050:intron | 40.0% | |
| AGTGGAAAATGTAGTGACTC+AGG | + | chr4_4:43032223-43032242 | None:intergenic | 40.0% | |
| ACGCCTTTCATAAGAAGTCT+CGG | + | chr4_4:43032576-43032595 | None:intergenic | 40.0% | |
| GACTAAAAGCCTATGAAGCA+CGG | + | chr4_4:43032699-43032718 | None:intergenic | 40.0% | |
| GTTCTTCTATACCCGTCTTT+CGG | - | chr4_4:43032747-43032766 | Msa0682050:intron | 40.0% | |
| TAAGTTGTAGGACCGAAAGA+CGG | + | chr4_4:43032762-43032781 | None:intergenic | 40.0% | |
| GACAAATATGTTAGGGACTC+TGG | - | chr4_4:43032867-43032886 | Msa0682050:intron | 40.0% | |
| TGATAATTGAGGGGCTGAAT+GGG | - | chr4_4:43032908-43032927 | Msa0682050:intron | 40.0% | |
| !! | TCATATTGACTTTGAGGGTG+AGG | - | chr4_4:43032958-43032977 | Msa0682050:intron | 40.0% |
| !! | TTTCTTGCGGTTGATTTTGC+AGG | - | chr4_4:43032995-43033014 | Msa0682050:CDS | 40.0% |
| ! | GATTTTGCAGGAGCTTAACT+TGG | - | chr4_4:43033007-43033026 | Msa0682050:intron | 40.0% |
| !! | TTTTGCAGGAGCTTAACTTG+GGG | - | chr4_4:43033009-43033028 | Msa0682050:intron | 40.0% |
| ! | TGGAGAGCTGCTTTGATTAA+TGG | - | chr4_4:43033181-43033200 | Msa0682050:CDS | 40.0% |
| TGGAAACAGCTTCAAAATGC+AGG | - | chr4_4:43033201-43033220 | Msa0682050:CDS | 40.0% | |
| AAGGAGTGAAGAGGAAGCAA+AGG | + | chr4_4:43031686-43031705 | None:intergenic | 45.0% | |
| GGTACTAACTAACATGCCGA+CGG | - | chr4_4:43031803-43031822 | Msa0682050:intron | 45.0% | |
| !! | GCCATTTTCTGATTCTCCGT+CGG | + | chr4_4:43031822-43031841 | None:intergenic | 45.0% |
| ACAGTCTAGTGGTTTGACTC+AGG | - | chr4_4:43032169-43032188 | Msa0682050:intron | 45.0% | |
| GCACCGAGACTTCTTATGAA+AGG | - | chr4_4:43032570-43032589 | Msa0682050:CDS | 45.0% | |
| ! | CTTCTTATGAAAGGCGTGTC+TGG | - | chr4_4:43032579-43032598 | Msa0682050:CDS | 45.0% |
| TGTTTGTGTCCGTGCTTCAT+AGG | - | chr4_4:43032687-43032706 | Msa0682050:intron | 45.0% | |
| AAGTTGTAGGACCGAAAGAC+GGG | + | chr4_4:43032761-43032780 | None:intergenic | 45.0% | |
| GTGATAATTGAGGGGCTGAA+TGG | - | chr4_4:43032907-43032926 | Msa0682050:intron | 45.0% | |
| GATAATTGAGGGGCTGAATG+GGG | - | chr4_4:43032909-43032928 | Msa0682050:intron | 45.0% | |
| AAGGAGTGAAGAGGAAGCAA+AGG | + | chr4_4:43031686-43031705 | None:intergenic | 45.0% | |
| GGTACTAACTAACATGCCGA+CGG | - | chr4_4:43031803-43031822 | Msa0682050:intron | 45.0% | |
| !! | GCCATTTTCTGATTCTCCGT+CGG | + | chr4_4:43031822-43031841 | None:intergenic | 45.0% |
| ACAGTCTAGTGGTTTGACTC+AGG | - | chr4_4:43032169-43032188 | Msa0682050:intron | 45.0% | |
| GCACCGAGACTTCTTATGAA+AGG | - | chr4_4:43032570-43032589 | Msa0682050:CDS | 45.0% | |
| ! | CTTCTTATGAAAGGCGTGTC+TGG | - | chr4_4:43032579-43032598 | Msa0682050:CDS | 45.0% |
| TGTTTGTGTCCGTGCTTCAT+AGG | - | chr4_4:43032687-43032706 | Msa0682050:intron | 45.0% | |
| AAGTTGTAGGACCGAAAGAC+GGG | + | chr4_4:43032761-43032780 | None:intergenic | 45.0% | |
| GTGATAATTGAGGGGCTGAA+TGG | - | chr4_4:43032907-43032926 | Msa0682050:intron | 45.0% | |
| GATAATTGAGGGGCTGAATG+GGG | - | chr4_4:43032909-43032928 | Msa0682050:intron | 45.0% | |
| !!! | TTTTTTTAATTTGATTTTAA+CGG | - | chr4_4:43033117-43033136 | Msa0682050:CDS | 5.0% |
| !!! | TTTTTTTAATTTGATTTTAA+CGG | - | chr4_4:43033117-43033136 | Msa0682050:CDS | 5.0% |
| GCCGACGGAGAATCAGAAAA+TGG | - | chr4_4:43031818-43031837 | Msa0682050:intron | 50.0% | |
| ! | GTCATCACATGTGTCGGTGT+CGG | + | chr4_4:43032625-43032644 | None:intergenic | 50.0% |
| ! | CGCTGCAGCATGAACTTTTG+TGG | - | chr4_4:43033161-43033180 | Msa0682050:CDS | 50.0% |
| GCCGACGGAGAATCAGAAAA+TGG | - | chr4_4:43031818-43031837 | Msa0682050:intron | 50.0% | |
| ! | GTCATCACATGTGTCGGTGT+CGG | + | chr4_4:43032625-43032644 | None:intergenic | 50.0% |
| ! | CGCTGCAGCATGAACTTTTG+TGG | - | chr4_4:43033161-43033180 | Msa0682050:CDS | 50.0% |
| ! | TGCAGGAGCTTAACTTGGGG+AGG | - | chr4_4:43033012-43033031 | Msa0682050:intron | 55.0% |
| ! | GCAGGAGCTTAACTTGGGGA+GGG | - | chr4_4:43033013-43033032 | Msa0682050:intron | 55.0% |
| ! | TGCAGGAGCTTAACTTGGGG+AGG | - | chr4_4:43033012-43033031 | Msa0682050:intron | 55.0% |
| ! | GCAGGAGCTTAACTTGGGGA+GGG | - | chr4_4:43033013-43033032 | Msa0682050:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 43031644 | 43033446 | 43031644 | ID=Msa0682050;Name=Msa0682050 |
| chr4_4 | mRNA | 43031644 | 43033446 | 43031644 | ID=Msa0682050-mRNA-1;Parent=Msa0682050;Name=Msa0682050-mRNA-1;_AED=0.06;_eAED=0.06;_QI=172|0.6|0.5|0.83|1|1|6|0|159 |
| chr4_4 | exon | 43031644 | 43031712 | 43031644 | ID=Msa0682050-mRNA-1:exon:10386;Parent=Msa0682050-mRNA-1 |
| chr4_4 | exon | 43031868 | 43031936 | 43031868 | ID=Msa0682050-mRNA-1:exon:10385;Parent=Msa0682050-mRNA-1 |
| chr4_4 | exon | 43032050 | 43032073 | 43032050 | ID=Msa0682050-mRNA-1:exon:10384;Parent=Msa0682050-mRNA-1 |
| chr4_4 | exon | 43032551 | 43032668 | 43032551 | ID=Msa0682050-mRNA-1:exon:10383;Parent=Msa0682050-mRNA-1 |
| chr4_4 | exon | 43032986 | 43033023 | 43032986 | ID=Msa0682050-mRNA-1:exon:10382;Parent=Msa0682050-mRNA-1 |
| chr4_4 | exon | 43033113 | 43033446 | 43033113 | ID=Msa0682050-mRNA-1:exon:10381;Parent=Msa0682050-mRNA-1 |
| chr4_4 | five_prime_UTR | 43033275 | 43033446 | 43033275 | ID=Msa0682050-mRNA-1:five_prime_utr;Parent=Msa0682050-mRNA-1 |
| chr4_4 | CDS | 43033113 | 43033274 | 43033113 | ID=Msa0682050-mRNA-1:cds;Parent=Msa0682050-mRNA-1 |
| chr4_4 | CDS | 43032986 | 43033023 | 43032986 | ID=Msa0682050-mRNA-1:cds;Parent=Msa0682050-mRNA-1 |
| chr4_4 | CDS | 43032551 | 43032668 | 43032551 | ID=Msa0682050-mRNA-1:cds;Parent=Msa0682050-mRNA-1 |
| chr4_4 | CDS | 43032050 | 43032073 | 43032050 | ID=Msa0682050-mRNA-1:cds;Parent=Msa0682050-mRNA-1 |
| chr4_4 | CDS | 43031868 | 43031936 | 43031868 | ID=Msa0682050-mRNA-1:cds;Parent=Msa0682050-mRNA-1 |
| chr4_4 | CDS | 43031644 | 43031712 | 43031644 | ID=Msa0682050-mRNA-1:cds;Parent=Msa0682050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
