AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0076250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076250 MtrunA17_Chr1g0185201 96.735 490 11 2 1 490 1 485 0.0 969
Msa0076250 MtrunA17_Chr7g0260211 75.967 491 95 11 1 487 1 472 0.0 640
Msa0076250 MtrunA17_Chr1g0166381 64.606 469 146 8 26 488 13 467 2.05e-154 447
Msa0076250 MtrunA17_Chr1g0204831 62.017 466 145 9 24 488 20 454 1.00e-136 402
Msa0076250 MtrunA17_Chr3g0140081 38.307 449 193 12 33 479 1 367 8.00e-65 214
Msa0076250 MtrunA17_Chr4g0019631 47.692 260 101 6 189 439 64 297 3.34e-51 176
Msa0076250 MtrunA17_Chr5g0399391 37.748 302 147 7 190 482 113 382 5.38e-44 159
Msa0076250 MtrunA17_Chr4g0073191 31.741 293 158 7 190 480 146 398 1.31e-13 72.4
Msa0076250 MtrunA17_Chr7g0260231 65.854 41 12 1 449 487 7 47 3.92e-13 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076250 AT3G22810.1 62.708 480 157 10 14 487 6 469 3.51e-179 511
Msa0076250 AT4G14740.1 62.947 475 149 11 24 487 16 474 8.65e-170 487
Msa0076250 AT4G14740.2 62.947 475 149 11 24 487 16 474 8.65e-170 487
Msa0076250 AT3G63300.1 62.424 495 162 12 7 490 11 492 1.67e-163 472
Msa0076250 AT5G43870.1 58.898 472 157 10 19 487 15 452 4.37e-147 429
Msa0076250 AT3G22810.2 62.379 412 133 10 14 419 6 401 1.93e-138 405
Msa0076250 AT3G22810.3 66.265 332 108 3 157 487 3 331 5.92e-135 393
Msa0076250 AT4G14740.3 67.262 336 102 5 157 487 3 335 1.66e-130 382
Msa0076250 AT4G14740.4 61.765 408 129 11 24 420 16 407 4.87e-130 384
Msa0076250 AT5G43870.2 58.519 405 131 10 19 420 15 385 8.82e-111 333
Msa0076250 AT3G63300.2 63.824 340 112 7 156 490 1 334 6.19e-108 325
Msa0076250 AT4G32780.1 34.066 455 205 10 26 479 35 395 1.04e-40 151
Msa0076250 AT4G17350.1 36.261 353 167 10 139 481 82 386 1.86e-40 150
Msa0076250 AT4G32780.2 34.286 455 204 10 26 479 54 414 2.04e-40 150
Msa0076250 AT4G16670.1 35.644 303 163 8 190 482 132 412 1.99e-37 142
Msa0076250 AT5G47440.1 34.125 337 182 8 158 482 79 387 1.30e-36 140
Msa0076250 AT4G16670.2 37.083 240 120 7 190 419 132 350 1.52e-25 107
Msa0076250 AT4G16670.3 36.726 226 112 7 190 405 132 336 4.82e-21 95.1
Msa0076250 AT5G57770.1 33.793 290 157 6 142 429 82 338 1.21e-19 91.3
Msa0076250 AT5G57770.2 33.577 274 150 5 142 413 82 325 6.23e-19 88.6

Find 88 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCTATTAATTTCCCTTAT+AGG 0.131479 1_2:+52204926 None:intergenic
GTTAAAGAACCACCATTTAA+TGG 0.205078 1_2:+52208154 None:intergenic
GCTCTTGTACCATTGAATAA+AGG 0.253731 1_2:+52206819 None:intergenic
ACCAAATAAGGATGAGAAAA+TGG 0.261318 1_2:-52206604 Msa0076250:CDS
CAGCATGAAGTTGAGCATTA+TGG 0.291068 1_2:+52206694 None:intergenic
TTAAATGGTGGTTCTTTAAC+AGG 0.293923 1_2:-52208151 Msa0076250:CDS
TTCCTCTAGCAAGAAGTTCT+TGG 0.299562 1_2:+52205664 None:intergenic
TGACTTGAATATTGTTGTTA+TGG 0.305256 1_2:+52208771 None:intergenic
TCCTCTAAAAGATGCCTTCC+TGG 0.305425 1_2:+52205204 None:intergenic
AGAAACTCCATTGGTATTCT+AGG 0.306883 1_2:+52208659 None:intergenic
AGCATCAACTACACCAAATA+AGG 0.313923 1_2:-52206616 Msa0076250:CDS
GACAATCTACCTGACGTTAA+TGG 0.316071 1_2:+52208190 None:intergenic
CCTTGATATATGCAGCTCTA+AGG 0.317117 1_2:-52205872 Msa0076250:intron
TTATTTGTAGAAGGCTTAGA+AGG 0.318646 1_2:+52208551 None:intergenic
TATTATATGTATGTTAGTTT+AGG 0.320668 1_2:-52204963 Msa0076250:three_prime_UTR
CTCTTGTACCATTGAATAAA+GGG 0.327749 1_2:+52206820 None:intergenic
GGAATAGAGTTATTTGTAGA+AGG 0.336321 1_2:+52208542 None:intergenic
CATAGCAGTGAACCATTAAA+TGG 0.367882 1_2:-52208166 Msa0076250:CDS
GAAGGAGGAGGTGGTGGTTG+AGG 0.372957 1_2:+52208587 None:intergenic
AGAGTAGTAATACTTTCTTC+AGG 0.380242 1_2:+52208521 None:intergenic
CTTGAGAAAAGCATAGGAAT+TGG 0.387663 1_2:-52205783 Msa0076250:CDS
AAAATAATTGAAAAGATAGA+TGG 0.394296 1_2:+52204855 None:intergenic
TCCATACACCCTTTATTCAA+TGG 0.400317 1_2:-52206828 Msa0076250:CDS
GGCAATGCAACTCCTTGTTC+AGG 0.404557 1_2:-52206780 Msa0076250:CDS
GAAGTAGAAGGAGGAGGTGG+TGG 0.411609 1_2:+52208581 None:intergenic
AAACTCATCAGAAGGAGAAA+TGG 0.415370 1_2:+52208114 None:intergenic
GAAAATGGCTAAGACTGATA+TGG 0.426643 1_2:-52206589 Msa0076250:CDS
AGAGCAATGAGTAGTGGAAT+AGG 0.436282 1_2:-52206801 Msa0076250:CDS
TGGAATGTAATATTTGTTGC+CGG 0.440292 1_2:-52205037 Msa0076250:exon
TGGAGTTTCTTTCAAGGTCA+TGG 0.443835 1_2:-52208646 Msa0076250:CDS
ACCATTGAATAAAGGGTGTA+TGG 0.446282 1_2:+52206827 None:intergenic
GAAGGTAAGCAAGAAGTAGA+AGG 0.449769 1_2:+52208569 None:intergenic
TATCTGTAGGTGATCTTCAC+TGG 0.451022 1_2:-52205528 Msa0076250:intron
AACTCATCAGAAGGAGAAAT+GGG 0.463215 1_2:+52208115 None:intergenic
TCTGTTTATATACATCGAAC+CGG 0.472832 1_2:-52205496 Msa0076250:CDS
GTGTTGCCATTGTTATTTGT+TGG 0.477598 1_2:+52208698 None:intergenic
ATTGGTATTCTAGGACTCTC+TGG 0.477798 1_2:+52208668 None:intergenic
TGACAATGGATAGTTAACTT+TGG 0.480512 1_2:+52208737 None:intergenic
CAAGAAGTAGAAGGAGGAGG+TGG 0.483974 1_2:+52208578 None:intergenic
CTTGATATATGCAGCTCTAA+GGG 0.484756 1_2:-52205871 Msa0076250:intron
AGTTCTAGCACTAGTGAAAG+TGG 0.488106 1_2:-52205729 Msa0076250:CDS
TACCAATGGAGTTTCTTTCA+AGG 0.496026 1_2:-52208652 Msa0076250:CDS
ATTGGAATATGTGGTGGTAA+AGG 0.499899 1_2:-52205765 Msa0076250:CDS
TGCCATTGTTATTTGTTGGA+AGG 0.506542 1_2:+52208702 None:intergenic
AGCATAGGAATTGGAATATG+TGG 0.506802 1_2:-52205774 Msa0076250:CDS
GGTACTCATTTCTATGACAA+TGG 0.513249 1_2:+52208723 None:intergenic
AGATGCCTTCCTGGCCAAGC+TGG 0.516445 1_2:+52205213 None:intergenic
TGTGCACAAATTTACCAGCT+TGG 0.518454 1_2:-52205227 Msa0076250:CDS
ACAAATTTACCAGCTTGGCC+AGG 0.521574 1_2:-52205222 Msa0076250:CDS
AAGCAAGAAGTAGAAGGAGG+AGG 0.524832 1_2:+52208575 None:intergenic
TGAGTTTGACGATGTTGTTA+AGG 0.540707 1_2:-52208098 Msa0076250:intron
TAGTTTAGTTACCTCTCTTG+CGG 0.541433 1_2:+52208406 None:intergenic
CTAACTGCTGCAGCTGCCAC+AGG 0.549453 1_2:-52206432 Msa0076250:intron
TTATATACATCGAACCGGCC+AGG 0.552074 1_2:-52205491 Msa0076250:intron
CAATATTCAAGTCACAAGAA+TGG 0.555392 1_2:-52208762 Msa0076250:exon
GACCTAAAACAGTAGGAAGA+TGG 0.556861 1_2:-52206758 Msa0076250:CDS
CAAGATTTCTCAAACATGTG+TGG 0.561026 1_2:-52208494 Msa0076250:CDS
ATGAAAAGCAGACATGTAGC+AGG 0.561812 1_2:-52205375 Msa0076250:CDS
TGTTGAAGCTGCTGAAGCAA+TGG 0.569846 1_2:-52206529 Msa0076250:CDS
GAAGTGTCTCCATTAACGTC+AGG 0.572753 1_2:-52208199 Msa0076250:CDS
TTACTCAAACGCACTCGCAA+AGG 0.576539 1_2:-52205636 Msa0076250:intron
CACTAGTGAAAGTGGAGGAG+AGG 0.579388 1_2:-52205721 Msa0076250:CDS
ATTTACCAGCTTGGCCAGGA+AGG 0.579688 1_2:-52205218 Msa0076250:CDS
GCAGTCAGCAGTGACTAGAC+CGG 0.580943 1_2:+52205018 None:intergenic
TTCTTTCCATTGTTTCACAC+AGG 0.583564 1_2:-52205071 Msa0076250:CDS
GGCTAAGACTGATATGGCTG+TGG 0.584637 1_2:-52206583 Msa0076250:CDS
GACCTTGAAAGAAACTCCAT+TGG 0.585295 1_2:+52208650 None:intergenic
GTTGAAGCTGCTGAAGCAAT+GGG 0.585546 1_2:-52206528 Msa0076250:CDS
ACATCGTCAAACTCATCAGA+AGG 0.588966 1_2:+52208106 None:intergenic
TGATATATGCAGCTCTAAGG+GGG 0.594778 1_2:-52205869 Msa0076250:intron
AGAGAGTCCTAGAATACCAA+TGG 0.596028 1_2:-52208666 Msa0076250:CDS
CAAGAGCAATGAAAGAGATG+TGG 0.596042 1_2:-52205830 Msa0076250:CDS
TGTTCAGGACCTAAAACAGT+AGG 0.601269 1_2:-52206765 Msa0076250:CDS
GGTACAAGAGCAATGAGTAG+TGG 0.604612 1_2:-52206807 Msa0076250:CDS
AGCCAAGAACTTCTTGCTAG+AGG 0.604636 1_2:-52205666 Msa0076250:CDS
GGTAAGCAAGAAGTAGAAGG+AGG 0.607622 1_2:+52208572 None:intergenic
TTGATATATGCAGCTCTAAG+GGG 0.610071 1_2:-52205870 Msa0076250:intron
ACACCACTTGAGAAAAGCAT+AGG 0.613376 1_2:-52205789 Msa0076250:CDS
CATGTCACAATCCGCAAGAG+AGG 0.623909 1_2:-52208417 Msa0076250:intron
TACCTTCCAACAAATAACAA+TGG 0.629115 1_2:-52208704 Msa0076250:CDS
GAATATGAATTGTGGACACA+AGG 0.633773 1_2:-52205105 Msa0076250:CDS
ATAGGAATTGGAATATGTGG+TGG 0.638819 1_2:-52205771 Msa0076250:CDS
TCTAGCACTAGTGAAAGTGG+AGG 0.643530 1_2:-52205726 Msa0076250:CDS
CAGAACTAACAACAGAAGCA+AGG 0.657396 1_2:+52206490 None:intergenic
TCATCAGAAGGAGAAATGGG+TGG 0.664227 1_2:+52208118 None:intergenic
AGCAGTGAACCATTAAATGG+TGG 0.669009 1_2:-52208163 Msa0076250:CDS
GATATATGCAGCTCTAAGGG+GGG 0.694136 1_2:-52205868 Msa0076250:intron
GGATTGAAGACAGAATCAAG+AGG 0.704203 1_2:-52205159 Msa0076250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAAAAAAAATAAAGGT+TGG + chr1_2:52207286-52207305 None:intergenic 10.0%
!!! GTTTTTTGTTTATAGTAATT+TGG - chr1_2:52205381-52205400 Msa0076250:CDS 15.0%
!! TGTATATTAGTAGAAAAATA+TGG + chr1_2:52205934-52205953 None:intergenic 15.0%
!! AAGCATATCATTAATAATAT+TGG + chr1_2:52206742-52206761 None:intergenic 15.0%
!! CAAAATGATTAAACTATATT+TGG - chr1_2:52208070-52208089 Msa0076250:intron 15.0%
!!! TATTATATGTATGTTAGTTT+AGG - chr1_2:52208665-52208684 Msa0076250:CDS 15.0%
!!! ATTAATAGATTTTGTAACAT+TGG - chr1_2:52208714-52208733 Msa0076250:CDS 15.0%
!!! TAAAGTTTGTTTTATGTAAC+AGG - chr1_2:52205407-52205426 Msa0076250:intron 20.0%
!! AAATATGGTCAAAGTAAATT+AGG + chr1_2:52205919-52205938 None:intergenic 20.0%
!! ATATGAACAAAATGTGTAAT+TGG + chr1_2:52206299-52206318 None:intergenic 20.0%
!!! TCAGAATTTTTTTATTCAGA+TGG - chr1_2:52206715-52206734 Msa0076250:CDS 20.0%
!!! ATATTATTTATTTAGGGTAG+TGG - chr1_2:52207435-52207454 Msa0076250:intron 20.0%
!! AAAAAATCATACTACAAAAC+AGG + chr1_2:52207702-52207721 None:intergenic 20.0%
!! TGAAAGATAAAAAAATTACC+TGG + chr1_2:52208158-52208177 None:intergenic 20.0%
!! TATAGAAATTGAAATACAGT+TGG - chr1_2:52208183-52208202 Msa0076250:CDS 20.0%
!!! ACTCTTTTTCTTTTTTGTAA+TGG + chr1_2:52208281-52208300 None:intergenic 20.0%
!!! ATTATTTCTATGATATTGCA+AGG + chr1_2:52208332-52208351 None:intergenic 20.0%
!! TCATAGAAATAATAACTCAT+TGG - chr1_2:52208339-52208358 Msa0076250:intron 20.0%
!! CATAGAAATAATAACTCATT+GGG - chr1_2:52208340-52208359 Msa0076250:intron 20.0%
!! AATCTATTAATTTCCCTTAT+AGG + chr1_2:52208705-52208724 None:intergenic 20.0%
! TTCCTACATATACTTCAAAA+GGG + chr1_2:52205268-52205287 None:intergenic 25.0%
! TTTCCTACATATACTTCAAA+AGG + chr1_2:52205269-52205288 None:intergenic 25.0%
! TATATGTAGGAAAAGACTTA+AGG - chr1_2:52205276-52205295 Msa0076250:intron 25.0%
! ATATGTAGGAAAAGACTTAA+GGG - chr1_2:52205277-52205296 Msa0076250:intron 25.0%
!!! AGACATTGTTATTCTTTTCA+AGG - chr1_2:52205353-52205372 Msa0076250:CDS 25.0%
!!! TGTTATTCTTTTCAAGGTTT+TGG - chr1_2:52205359-52205378 Msa0076250:CDS 25.0%
! AAAACTAAATCTAGTAGCAA+GGG - chr1_2:52205735-52205754 Msa0076250:CDS 25.0%
! ACTACTTTCTTGGTTTAATA+TGG - chr1_2:52206126-52206145 Msa0076250:intron 25.0%
! TTACAACAGAAACAATACTT+TGG - chr1_2:52206175-52206194 Msa0076250:intron 25.0%
! AAAATGTGTAATTGGATTCA+TGG + chr1_2:52206291-52206310 None:intergenic 25.0%
!! TGAACTTTGAACATAACTTT+TGG - chr1_2:52206464-52206483 Msa0076250:CDS 25.0%
!! TTTGAACATAACTTTTGGAT+GGG - chr1_2:52206469-52206488 Msa0076250:CDS 25.0%
! GTTAAAAAATGTCACAATGT+TGG - chr1_2:52207259-52207278 Msa0076250:intron 25.0%
! AATCTCGATTAGAAAATGTA+TGG + chr1_2:52207472-52207491 None:intergenic 25.0%
! CTGTAAAGAATCAACTAATA+AGG - chr1_2:52207635-52207654 Msa0076250:intron 25.0%
!! ATTTTTACCAGATATTGTGT+TGG - chr1_2:52208375-52208394 Msa0076250:intron 25.0%
! ACCAAAAAGAATATGAATTG+TGG - chr1_2:52208515-52208534 Msa0076250:CDS 25.0%
!! TCCACAATTCATATTCTTTT+TGG + chr1_2:52208519-52208538 None:intergenic 25.0%
!!! TTTGTTTTGCAAATCCTATA+AGG - chr1_2:52208688-52208707 Msa0076250:CDS 25.0%
!!! TTGTTTTGCAAATCCTATAA+GGG - chr1_2:52208689-52208708 Msa0076250:CDS 25.0%
!! TAGATTTTGTAACATTGGAA+TGG - chr1_2:52208719-52208738 Msa0076250:CDS 25.0%
!! AGATTTTGTAACATTGGAAT+GGG - chr1_2:52208720-52208739 Msa0076250:CDS 25.0%
CAATATTCAAGTCACAAGAA+TGG - chr1_2:52204866-52204885 Msa0076250:three_prime_UTR 30.0%
TGACAATGGATAGTTAACTT+TGG + chr1_2:52204894-52204913 None:intergenic 30.0%
TACCTTCCAACAAATAACAA+TGG - chr1_2:52204924-52204943 Msa0076250:three_prime_UTR 30.0%
TTATTTGTAGAAGGCTTAGA+AGG + chr1_2:52205080-52205099 None:intergenic 30.0%
GGAATAGAGTTATTTGTAGA+AGG + chr1_2:52205089-52205108 None:intergenic 30.0%
AGAGTAGTAATACTTTCTTC+AGG + chr1_2:52205110-52205129 None:intergenic 30.0%
TCCTACATATACTTCAAAAG+GGG + chr1_2:52205267-52205286 None:intergenic 30.0%
GTTAAAGAACCACCATTTAA+TGG + chr1_2:52205477-52205496 None:intergenic 30.0%
TTAAATGGTGGTTCTTTAAC+AGG - chr1_2:52205477-52205496 Msa0076250:intron 30.0%
!! ACTGCAACAATTGTTTCTAA+GGG + chr1_2:52205599-52205618 None:intergenic 30.0%
CAAAACTAAATCTAGTAGCA+AGG - chr1_2:52205734-52205753 Msa0076250:CDS 30.0%
TCAAATGAGTTATCTATTGC+AGG + chr1_2:52205880-52205899 None:intergenic 30.0%
TCAACTGTGTCATGTATTAT+GGG - chr1_2:52206092-52206111 Msa0076250:intron 30.0%
GAAACAATACTTTGGTATAG+AGG - chr1_2:52206183-52206202 Msa0076250:intron 30.0%
! TACTTTGGTATAGAGGTTTT+TGG - chr1_2:52206190-52206209 Msa0076250:intron 30.0%
AGTAAATTGTACACCACTAA+TGG - chr1_2:52206331-52206350 Msa0076250:intron 30.0%
!!! TCTTTTTTTTTGTCAGGTAG+TGG + chr1_2:52206370-52206389 None:intergenic 30.0%
!!! GTTAGCTCTTTTTTTTTGTC+AGG + chr1_2:52206376-52206395 None:intergenic 30.0%
AAGTCATAAGCTATAACACT+AGG + chr1_2:52206404-52206423 None:intergenic 30.0%
! CTTTGAACATAACTTTTGGA+TGG - chr1_2:52206468-52206487 Msa0076250:CDS 30.0%
AATCAGAAGATAAGGTACAT+TGG + chr1_2:52206600-52206619 None:intergenic 30.0%
GAAAATATGCCAAAATGAGA+AGG + chr1_2:52206634-52206653 None:intergenic 30.0%
TTTCCTAGTTAAATGCTGAA+GGG + chr1_2:52206677-52206696 None:intergenic 30.0%
! TTTTCCTAGTTAAATGCTGA+AGG + chr1_2:52206678-52206697 None:intergenic 30.0%
CTCTTGTACCATTGAATAAA+GGG + chr1_2:52206811-52206830 None:intergenic 30.0%
ACCAAATAAGGATGAGAAAA+TGG - chr1_2:52207024-52207043 Msa0076250:intron 30.0%
AATGAAGAAAATTCTACCTG+TGG + chr1_2:52207215-52207234 None:intergenic 30.0%
!! TATTTATTTAGGGTAGTGGA+AGG - chr1_2:52207439-52207458 Msa0076250:intron 30.0%
!! ATTTATTTAGGGTAGTGGAA+GGG - chr1_2:52207440-52207459 Msa0076250:intron 30.0%
! ATTTGGTGATTGATATCTGT+AGG - chr1_2:52208087-52208106 Msa0076250:intron 30.0%
TCTGTTTATATACATCGAAC+CGG - chr1_2:52208132-52208151 Msa0076250:CDS 30.0%
AGATAAAAAAATTACCTGGC+CGG + chr1_2:52208154-52208173 None:intergenic 30.0%
!!! GGTGAAAAAAGAAGGTATTT+TGG - chr1_2:52208448-52208467 Msa0076250:CDS 30.0%
! TGGAATGTAATATTTGTTGC+CGG - chr1_2:52208591-52208610 Msa0076250:CDS 30.0%
GGTACTCATTTCTATGACAA+TGG + chr1_2:52204908-52204927 None:intergenic 35.0%
!! TGCCATTGTTATTTGTTGGA+AGG + chr1_2:52204929-52204948 None:intergenic 35.0%
!! GTGTTGCCATTGTTATTTGT+TGG + chr1_2:52204933-52204952 None:intergenic 35.0%
AGAAACTCCATTGGTATTCT+AGG + chr1_2:52204972-52204991 None:intergenic 35.0%
TACCAATGGAGTTTCTTTCA+AGG - chr1_2:52204976-52204995 Msa0076250:three_prime_UTR 35.0%
CAAGATTTCTCAAACATGTG+TGG - chr1_2:52205134-52205153 Msa0076250:CDS 35.0%
TAGTTTAGTTACCTCTCTTG+CGG + chr1_2:52205225-52205244 None:intergenic 35.0%
!!! ACCCCTTTTGAAGTATATGT+AGG - chr1_2:52205263-52205282 Msa0076250:intron 35.0%
CATAGCAGTGAACCATTAAA+TGG - chr1_2:52205462-52205481 Msa0076250:intron 35.0%
AACTCATCAGAAGGAGAAAT+GGG + chr1_2:52205516-52205535 None:intergenic 35.0%
AAACTCATCAGAAGGAGAAA+TGG + chr1_2:52205517-52205536 None:intergenic 35.0%
TGAGTTTGACGATGTTGTTA+AGG - chr1_2:52205530-52205549 Msa0076250:intron 35.0%
!! TGTTCCCTTACCTTTTGTTT+TGG - chr1_2:52205561-52205580 Msa0076250:intron 35.0%
!!! GTTCCCTTACCTTTTGTTTT+GGG - chr1_2:52205562-52205581 Msa0076250:intron 35.0%
CAACCCAAAACAAAAGGTAA+GGG + chr1_2:52205568-52205587 None:intergenic 35.0%
!! GACTGCAACAATTGTTTCTA+AGG + chr1_2:52205600-52205619 None:intergenic 35.0%
AAACATGTGATCCAAAAGTG+AGG + chr1_2:52205826-52205845 None:intergenic 35.0%
ATGAGTTATCTATTGCAGGA+CGG + chr1_2:52205876-52205895 None:intergenic 35.0%
! TATGCATTGATATGCGTAAC+AGG - chr1_2:52206068-52206087 Msa0076250:intron 35.0%
! ATGCATTGATATGCGTAACA+GGG - chr1_2:52206069-52206088 Msa0076250:intron 35.0%
GTCAACTGTGTCATGTATTA+TGG - chr1_2:52206091-52206110 Msa0076250:intron 35.0%
!! GGTGTACAATTTACTTTTGC+AGG + chr1_2:52206326-52206345 None:intergenic 35.0%
! AAAGCATTAGAGACCATTAG+TGG + chr1_2:52206347-52206366 None:intergenic 35.0%
ATATGCCAAAATGAGAAGGT+TGG + chr1_2:52206630-52206649 None:intergenic 35.0%
TCCATACACCCTTTATTCAA+TGG - chr1_2:52206800-52206819 Msa0076250:CDS 35.0%
! ACCATTGAATAAAGGGTGTA+TGG + chr1_2:52206804-52206823 None:intergenic 35.0%
GCTCTTGTACCATTGAATAA+AGG + chr1_2:52206812-52206831 None:intergenic 35.0%
! AACCATCTTCCTACTGTTTT+AGG + chr1_2:52206875-52206894 None:intergenic 35.0%
AGCATCAACTACACCAAATA+AGG - chr1_2:52207012-52207031 Msa0076250:intron 35.0%
!! GCCATTTTCTCATCCTTATT+TGG + chr1_2:52207028-52207047 None:intergenic 35.0%
GAAAATGGCTAAGACTGATA+TGG - chr1_2:52207039-52207058 Msa0076250:intron 35.0%
TTCTAATCGAGATTCGAACT+CGG - chr1_2:52207478-52207497 Msa0076250:intron 35.0%
GGTGACTGCTTAACTTTATA+AGG + chr1_2:52207505-52207524 None:intergenic 35.0%
AGGAATGTTCATGTTACACA+TGG - chr1_2:52207655-52207674 Msa0076250:intron 35.0%
! ATGTTACACATGGTTTGTCA+GGG - chr1_2:52207665-52207684 Msa0076250:intron 35.0%
ATTGGCAATATAACAAGGAC+AGG + chr1_2:52207727-52207746 None:intergenic 35.0%
! TCCTTGTTATATTGCCAATG+TGG - chr1_2:52207728-52207747 Msa0076250:intron 35.0%
ACCACATTGGCAATATAACA+AGG + chr1_2:52207732-52207751 None:intergenic 35.0%
! CTTGATATATGCAGCTCTAA+GGG - chr1_2:52207757-52207776 Msa0076250:intron 35.0%
!! TTGATATATGCAGCTCTAAG+GGG - chr1_2:52207758-52207777 Msa0076250:intron 35.0%
! ATTCCTATGCTTTTCTCAAG+TGG + chr1_2:52207845-52207864 None:intergenic 35.0%
! CTTGAGAAAAGCATAGGAAT+TGG - chr1_2:52207845-52207864 Msa0076250:intron 35.0%
AGCATAGGAATTGGAATATG+TGG - chr1_2:52207854-52207873 Msa0076250:intron 35.0%
ATAGGAATTGGAATATGTGG+TGG - chr1_2:52207857-52207876 Msa0076250:intron 35.0%
ATTGGAATATGTGGTGGTAA+AGG - chr1_2:52207863-52207882 Msa0076250:intron 35.0%
CAAATGCTTGCATTCATTTC+AGG - chr1_2:52208219-52208238 Msa0076250:intron 35.0%
TAGAGGATGGTGAAAAAAGA+AGG - chr1_2:52208440-52208459 Msa0076250:CDS 35.0%
GAATATGAATTGTGGACACA+AGG - chr1_2:52208523-52208542 Msa0076250:CDS 35.0%
TTCTTTCCATTGTTTCACAC+AGG - chr1_2:52208557-52208576 Msa0076250:CDS 35.0%
! GTTTTTCCTGTGTGAAACAA+TGG + chr1_2:52208566-52208585 None:intergenic 35.0%
TCACACAGGAAAAACAGAAA+TGG - chr1_2:52208571-52208590 Msa0076250:CDS 35.0%
!! ATTGGTATTCTAGGACTCTC+TGG + chr1_2:52204963-52204982 None:intergenic 40.0%
AGAGAGTCCTAGAATACCAA+TGG - chr1_2:52204962-52204981 Msa0076250:three_prime_UTR 40.0%
GACCTTGAAAGAAACTCCAT+TGG + chr1_2:52204981-52205000 None:intergenic 40.0%
TGGAGTTTCTTTCAAGGTCA+TGG - chr1_2:52204982-52205001 Msa0076250:three_prime_UTR 40.0%
GAAGGTAAGCAAGAAGTAGA+AGG + chr1_2:52205062-52205081 None:intergenic 40.0%
GACAATCTACCTGACGTTAA+TGG + chr1_2:52205441-52205460 None:intergenic 40.0%
AGCAGTGAACCATTAAATGG+TGG - chr1_2:52205465-52205484 Msa0076250:intron 40.0%
ACATCGTCAAACTCATCAGA+AGG + chr1_2:52205525-52205544 None:intergenic 40.0%
CCAACCCAAAACAAAAGGTA+AGG + chr1_2:52205569-52205588 None:intergenic 40.0%
!!! CCTTACCTTTTGTTTTGGGT+TGG - chr1_2:52205566-52205585 Msa0076250:intron 40.0%
!!! CTTTTGTTTTGGGTTGGAGT+GGG - chr1_2:52205572-52205591 Msa0076250:intron 40.0%
CTGTGTCATGTATTATGGGT+CGG - chr1_2:52206096-52206115 Msa0076250:intron 40.0%
GTTGCGTGAATCAGAAGATA+AGG + chr1_2:52206608-52206627 None:intergenic 40.0%
! AGAGCAATGAGTAGTGGAAT+AGG - chr1_2:52206827-52206846 Msa0076250:CDS 40.0%
!! ACTGTTTTAGGTCCTGAACA+AGG + chr1_2:52206863-52206882 None:intergenic 40.0%
TGTTCAGGACCTAAAACAGT+AGG - chr1_2:52206863-52206882 Msa0076250:intron 40.0%
GACCTAAAACAGTAGGAAGA+TGG - chr1_2:52206870-52206889 Msa0076250:intron 40.0%
CAGCATGAAGTTGAGCATTA+TGG + chr1_2:52206937-52206956 None:intergenic 40.0%
CAGAACTAACAACAGAAGCA+AGG + chr1_2:52207141-52207160 None:intergenic 40.0%
! CATGTTACACATGGTTTGTC+AGG - chr1_2:52207664-52207683 Msa0076250:intron 40.0%
! TGTTACACATGGTTTGTCAG+GGG - chr1_2:52207666-52207685 Msa0076250:intron 40.0%
ATATCAAGGAAGGACCACAT+TGG + chr1_2:52207745-52207764 None:intergenic 40.0%
AGAGCTGCATATATCAAGGA+AGG + chr1_2:52207755-52207774 None:intergenic 40.0%
CCTTAGAGCTGCATATATCA+AGG + chr1_2:52207759-52207778 None:intergenic 40.0%
CCTTGATATATGCAGCTCTA+AGG - chr1_2:52207756-52207775 Msa0076250:intron 40.0%
!! TGATATATGCAGCTCTAAGG+GGG - chr1_2:52207759-52207778 Msa0076250:intron 40.0%
CAAGAGCAATGAAAGAGATG+TGG - chr1_2:52207798-52207817 Msa0076250:intron 40.0%
! ACACCACTTGAGAAAAGCAT+AGG - chr1_2:52207839-52207858 Msa0076250:intron 40.0%
! AGTTCTAGCACTAGTGAAAG+TGG - chr1_2:52207899-52207918 Msa0076250:intron 40.0%
TTCCTCTAGCAAGAAGTTCT+TGG + chr1_2:52207967-52207986 None:intergenic 40.0%
TATCTGTAGGTGATCTTCAC+TGG - chr1_2:52208100-52208119 Msa0076250:CDS 40.0%
ATGAAAAGCAGACATGTAGC+AGG - chr1_2:52208253-52208272 Msa0076250:intron 40.0%
CACACATCCAACACAATATC+TGG + chr1_2:52208385-52208404 None:intergenic 40.0%
TGTGCACAAATTTACCAGCT+TGG - chr1_2:52208401-52208420 Msa0076250:intron 40.0%
GGATTGAAGACAGAATCAAG+AGG - chr1_2:52208469-52208488 Msa0076250:CDS 40.0%
AAGCAAGAAGTAGAAGGAGG+AGG + chr1_2:52205056-52205075 None:intergenic 45.0%
GGTAAGCAAGAAGTAGAAGG+AGG + chr1_2:52205059-52205078 None:intergenic 45.0%
! GAAGTGTCTCCATTAACGTC+AGG - chr1_2:52205429-52205448 Msa0076250:intron 45.0%
TCATCAGAAGGAGAAATGGG+TGG + chr1_2:52205513-52205532 None:intergenic 45.0%
CCACTCCAACCCAAAACAAA+AGG + chr1_2:52205574-52205593 None:intergenic 45.0%
!!! CCTTTTGTTTTGGGTTGGAG+TGG - chr1_2:52205571-52205590 Msa0076250:intron 45.0%
CAAGAGGAAGACACTAGACA+GGG + chr1_2:52205800-52205819 None:intergenic 45.0%
! TCCTCTTGCAACCTCACTTT+TGG - chr1_2:52205812-52205831 Msa0076250:CDS 45.0%
TCCAAAAGTGAGGTTGCAAG+AGG + chr1_2:52205816-52205835 None:intergenic 45.0%
GTTATCTATTGCAGGACGGA+GGG + chr1_2:52205872-52205891 None:intergenic 45.0%
AGTTATCTATTGCAGGACGG+AGG + chr1_2:52205873-52205892 None:intergenic 45.0%
TGTCATGTATTATGGGTCGG+AGG - chr1_2:52206099-52206118 Msa0076250:intron 45.0%
GTCATGTATTATGGGTCGGA+GGG - chr1_2:52206100-52206119 Msa0076250:intron 45.0%
CTGTCTAACAATCAGCAAGC+AGG + chr1_2:52206556-52206575 None:intergenic 45.0%
! CTTGCTGATTGTTAGACAGC+AGG - chr1_2:52206557-52206576 Msa0076250:CDS 45.0%
! CGCAACCAACCTTCTCATTT+TGG - chr1_2:52206622-52206641 Msa0076250:CDS 45.0%
GCTCCCTTCAGCATTTAACT+AGG - chr1_2:52206671-52206690 Msa0076250:CDS 45.0%
GGTACAAGAGCAATGAGTAG+TGG - chr1_2:52206821-52206840 Msa0076250:CDS 45.0%
TGTTGAAGCTGCTGAAGCAA+TGG - chr1_2:52207099-52207118 Msa0076250:intron 45.0%
GTTGAAGCTGCTGAAGCAAT+GGG - chr1_2:52207100-52207119 Msa0076250:intron 45.0%
!! GATATATGCAGCTCTAAGGG+GGG - chr1_2:52207760-52207779 Msa0076250:intron 45.0%
TCTAGCACTAGTGAAAGTGG+AGG - chr1_2:52207902-52207921 Msa0076250:intron 45.0%
AGCCAAGAACTTCTTGCTAG+AGG - chr1_2:52207962-52207981 Msa0076250:intron 45.0%
TTACTCAAACGCACTCGCAA+AGG - chr1_2:52207992-52208011 Msa0076250:intron 45.0%
TTATATACATCGAACCGGCC+AGG - chr1_2:52208137-52208156 Msa0076250:CDS 45.0%
ACAAATTTACCAGCTTGGCC+AGG - chr1_2:52208406-52208425 Msa0076250:intron 45.0%
! TCCTCTAAAAGATGCCTTCC+TGG + chr1_2:52208427-52208446 None:intergenic 45.0%
!!! GGAAGGCATCTTTTAGAGGA+TGG - chr1_2:52208427-52208446 Msa0076250:CDS 45.0%
!! TTCATATATAAAAAAAATAA+AGG + chr1_2:52207290-52207309 None:intergenic 5.0%
!! ATTATTCATATTATTTATTT+AGG - chr1_2:52207428-52207447 Msa0076250:intron 5.0%
!! TTATTCATATTATTTATTTA+GGG - chr1_2:52207429-52207448 Msa0076250:intron 5.0%
CAAGAAGTAGAAGGAGGAGG+TGG + chr1_2:52205053-52205072 None:intergenic 50.0%
CATGTCACAATCCGCAAGAG+AGG - chr1_2:52205211-52205230 Msa0076250:CDS 50.0%
AATCTAGTAGCAAGGGCCCT+AGG - chr1_2:52205742-52205761 Msa0076250:CDS 50.0%
GCAAGAGGAAGACACTAGAC+AGG + chr1_2:52205801-52205820 None:intergenic 50.0%
!! CGGAGGGAGTACTACTTTCT+TGG - chr1_2:52206116-52206135 Msa0076250:intron 50.0%
AATCAGCAAGCAGGCAGGTT+TGG + chr1_2:52206547-52206566 None:intergenic 50.0%
CTAACAATCAGCAAGCAGGC+AGG + chr1_2:52206552-52206571 None:intergenic 50.0%
GGCAATGCAACTCCTTGTTC+AGG - chr1_2:52206848-52206867 Msa0076250:CDS 50.0%
GGCTAAGACTGATATGGCTG+TGG - chr1_2:52207045-52207064 Msa0076250:intron 50.0%
! TTTCGTGTGTGATAGCGCAG+TGG + chr1_2:52207526-52207545 None:intergenic 50.0%
CACTAGTGAAAGTGGAGGAG+AGG - chr1_2:52207907-52207926 Msa0076250:intron 50.0%
ATTTACCAGCTTGGCCAGGA+AGG - chr1_2:52208410-52208429 Msa0076250:intron 50.0%
!!! GCCAGGAAGGCATCTTTTAG+AGG - chr1_2:52208423-52208442 Msa0076250:CDS 50.0%
GAAGTAGAAGGAGGAGGTGG+TGG + chr1_2:52205050-52205069 None:intergenic 55.0%
AGGAAGACACTAGACAGGGC+CGG + chr1_2:52205796-52205815 None:intergenic 55.0%
! AGCAGGCAGGTTTGGTTGAC+AGG + chr1_2:52206539-52206558 None:intergenic 55.0%
GCAGTCAGCAGTGACTAGAC+CGG + chr1_2:52208613-52208632 None:intergenic 55.0%
! GAAGGAGGAGGTGGTGGTTG+AGG + chr1_2:52205044-52205063 None:intergenic 60.0%
CTAACTGCTGCAGCTGCCAC+AGG - chr1_2:52207196-52207215 Msa0076250:intron 60.0%
AGATGCCTTCCTGGCCAAGC+TGG + chr1_2:52208418-52208437 None:intergenic 60.0%
GCACCCCCGGCCTATGCCTA+GGG - chr1_2:52205770-52205789 Msa0076250:CDS 70.0%
ACAGGGCCGGCCCTAGGCAT+AGG + chr1_2:52205783-52205802 None:intergenic 70.0%
CACTAGACAGGGCCGGCCCT+AGG + chr1_2:52205789-52205808 None:intergenic 70.0%
GCCCTAGGTCCTCGCACCCC+CGG - chr1_2:52205757-52205776 Msa0076250:CDS 75.0%
! GCCGGGGGTGCGAGGACCTA+GGG + chr1_2:52205761-52205780 None:intergenic 75.0%
! AGGCATAGGCCGGGGGTGCG+AGG + chr1_2:52205769-52205788 None:intergenic 75.0%
CGCACCCCCGGCCTATGCCT+AGG - chr1_2:52205769-52205788 Msa0076250:CDS 75.0%
CGGCCCTAGGCATAGGCCGG+GGG + chr1_2:52205776-52205795 None:intergenic 75.0%
CCGGCCCTAGGCATAGGCCG+GGG + chr1_2:52205777-52205796 None:intergenic 75.0%
CCCCGGCCTATGCCTAGGGC+CGG - chr1_2:52205774-52205793 Msa0076250:CDS 75.0%
GCCGGCCCTAGGCATAGGCC+GGG + chr1_2:52205778-52205797 None:intergenic 75.0%
GGCCGGCCCTAGGCATAGGC+CGG + chr1_2:52205779-52205798 None:intergenic 75.0%
!! GGCCGGGGGTGCGAGGACCT+AGG + chr1_2:52205762-52205781 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 52204859 52208791 52204859 ID=Msa0076250;Name=Msa0076250
chr1_2 mRNA 52204859 52208791 52204859 ID=Msa0076250-mRNA-1;Parent=Msa0076250;Name=Msa0076250-mRNA-1;_AED=0.05;_eAED=0.05;_QI=26|1|1|1|1|1|7|191|490
chr1_2 exon 52204859 52205264 52204859 ID=Msa0076250-mRNA-1:exon:16145;Parent=Msa0076250-mRNA-1
chr1_2 exon 52205352 52205409 52205352 ID=Msa0076250-mRNA-1:exon:16144;Parent=Msa0076250-mRNA-1
chr1_2 exon 52205492 52205541 52205492 ID=Msa0076250-mRNA-1:exon:16143;Parent=Msa0076250-mRNA-1
chr1_2 exon 52205637 52205879 52205637 ID=Msa0076250-mRNA-1:exon:16142;Parent=Msa0076250-mRNA-1
chr1_2 exon 52206433 52206868 52206433 ID=Msa0076250-mRNA-1:exon:16141;Parent=Msa0076250-mRNA-1
chr1_2 exon 52208099 52208221 52208099 ID=Msa0076250-mRNA-1:exon:16140;Parent=Msa0076250-mRNA-1
chr1_2 exon 52208418 52208791 52208418 ID=Msa0076250-mRNA-1:exon:16139;Parent=Msa0076250-mRNA-1
chr1_2 five_prime_UTR 52208766 52208791 52208766 ID=Msa0076250-mRNA-1:five_prime_utr;Parent=Msa0076250-mRNA-1
chr1_2 CDS 52208418 52208765 52208418 ID=Msa0076250-mRNA-1:cds;Parent=Msa0076250-mRNA-1
chr1_2 CDS 52208099 52208221 52208099 ID=Msa0076250-mRNA-1:cds;Parent=Msa0076250-mRNA-1
chr1_2 CDS 52206433 52206868 52206433 ID=Msa0076250-mRNA-1:cds;Parent=Msa0076250-mRNA-1
chr1_2 CDS 52205637 52205879 52205637 ID=Msa0076250-mRNA-1:cds;Parent=Msa0076250-mRNA-1
chr1_2 CDS 52205492 52205541 52205492 ID=Msa0076250-mRNA-1:cds;Parent=Msa0076250-mRNA-1
chr1_2 CDS 52205352 52205409 52205352 ID=Msa0076250-mRNA-1:cds;Parent=Msa0076250-mRNA-1
chr1_2 CDS 52205050 52205264 52205050 ID=Msa0076250-mRNA-1:cds;Parent=Msa0076250-mRNA-1
chr1_2 three_prime_UTR 52204859 52205049 52204859 ID=Msa0076250-mRNA-1:three_prime_utr;Parent=Msa0076250-mRNA-1
Gene Sequence

>Msa0076250

ATGGAACCAAAGTTAACTATCCATTGTCATAGAAATGAGTACCTTCCAACAAATAACAATGGCAACACACGTTTGCCAGAGAGTCCTAGAATACCAATGGAGTTTCTTTCAAGGTCATGGAGTGCTTCTGCATTTGAAGTCTCTAAAGCATTGTCACCTCAACCACCACCTCCTCCTTCTACTTCTTGCTTACCTTCTAAGCCTTCTACAAATAACTCTATTCCTGAAGAAAGTATTACTACTCTTTCTCAAGATTTCTCAAACATGTGTGGAAATCAATTCTCTTTTGCTTCTTCTACTACTTCACAGCTTGTTCTTGAACGTATCATGTCACAATCCGCAAGAGAGGAAGTGTCTCCATTAACGTCAGGTAGATTGTCTCATAGCAGTGAACCATTAAATGGTGGTTCTTTAACAGGAACAGATAGTCCACCCATTTCTCCTTCTGATGAGTTTGACGATGTTGTTAAGTTTTTTCGTGCAAACAATTCCATACACCCTTTATTCAATGGTACAAGAGCAATGAGTAGTGGAATAGGCAATGCAACTCCTTGTTCAGGACCTAAAACAGTAGGAAGATGGTTGAAAGAAAGAAGAGAAAAAAAGAAAGAAGAAAACAGAAGCCATAATGCTCAACTTCATGCTGCTATTTCTGTAGCTGCTGTAGCTTCTGCAGTTGCAGCTATCACTGCAGCAACAGCAGCATCAACTACACCAAATAAGGATGAGAAAATGGCTAAGACTGATATGGCTGTGGCTTCTGCAGCAACACTAATTGCTGCTCAGTGTGTTGAAGCTGCTGAAGCAATGGGAGCTGAGAGAGAACACCTTGCTTCTGTTGTTAGTTCTGCTGTTAATGTGAAATCTCATGATGATATCACTACTCTAACTGCTGCAGCTGCCACAGCTCTAAGGGGGGCAGCAACATTGAAAGCAAGAGCAATGAAAGAGATGTGGAATATTAGTACTGCAGTGACACCACTTGAGAAAAGCATAGGAATTGGAATATGTGGTGGTAAAGGCAATAACAACAGTAGTTCTAGCACTAGTGAAAGTGGAGGAGAGGTTATCAATGCAGATAATTTTCTAAGTACTTGCAGCCAAGAACTTCTTGCTAGAGGAACTGAATTACTCAAACGCACTCGCAAAGGTGATCTTCACTGGAAAATAGTTTCTGTTTATATACATCGAACCGGCCAGGTTAAGCTGAAAATGAAAAGCAGACATGTAGCAGGAACCATTACAAAAAAGAAAAAGAATATTGTGTTGGATGTGTGCACAAATTTACCAGCTTGGCCAGGAAGGCATCTTTTAGAGGATGGTGAAAAAAGAAGGTATTTTGGATTGAAGACAGAATCAAGAGGTTTAGTTGAGTTTGAATGTAGAAACCAAAAAGAATATGAATTGTGGACACAAGGTGTTTCAAGACTTCTTTCCATTGTTTCACACAGGAAAAACAGAAATGGAATGTAA

Protein sequence

>Msa0076250

MEPKLTIHCHRNEYLPTNNNGNTRLPESPRIPMEFLSRSWSASAFEVSKALSPQPPPPPSTSCLPSKPSTNNSIPEESITTLSQDFSNMCGNQFSFASSTTSQLVLERIMSQSAREEVSPLTSGRLSHSSEPLNGGSLTGTDSPPISPSDEFDDVVKFFRANNSIHPLFNGTRAMSSGIGNATPCSGPKTVGRWLKERREKKKEENRSHNAQLHAAISVAAVASAVAAITAATAASTTPNKDEKMAKTDMAVASAATLIAAQCVEAAEAMGAEREHLASVVSSAVNVKSHDDITTLTAAAATALRGAATLKARAMKEMWNISTAVTPLEKSIGIGICGGKGNNNSSSSTSESGGEVINADNFLSTCSQELLARGTELLKRTRKGDLHWKIVSVYIHRTGQVKLKMKSRHVAGTITKKKKNIVLDVCTNLPAWPGRHLLEDGEKRRYFGLKTESRGLVEFECRNQKEYELWTQGVSRLLSIVSHRKNRNGM*