AlfalfaGEDB | Msa0739730

M. sativa cultivar zhongmu-4 / Msa0739730

KEGG: -
GO: -
PFAM: PF03140.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739730	XP_004491288.1	64.423	416	137	9	1	408	1	413	1.74e-180	520

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739730	sp\|Q9SD53\|Y3720_ARATH	28.642	405	257	12	25	407	39	433	8.77e-41	154

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739730	A0A1S2XP20	64.423	416	137	9	1	408	1	413	0.0	520

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000190	Msa0739730	0.813291	2.757750e-51	-8.615850e-47
Msa0005890	Msa0739730	0.812785	3.560103e-51	-8.615850e-47
Msa0017510	Msa0739730	0.832856	7.446278e-56	-8.615850e-47
Msa0022550	Msa0739730	0.814391	1.577814e-51	-8.615850e-47
Msa0024550	Msa0739730	0.826690	2.362184e-54	-8.615850e-47
Msa0061340	Msa0739730	0.800438	1.441445e-48	-8.615850e-47
Msa0074240	Msa0739730	0.804316	2.290788e-49	-8.615850e-47
Msa0076250	Msa0739730	0.810373	1.190750e-50	-8.615850e-47
Msa0089630	Msa0739730	0.801055	1.078535e-48	-8.615850e-47
Msa0120400	Msa0739730	0.837758	4.301600e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739730	MtrunA17_Chr5g0439721	63.043	414	144	8	1	408	1	411	6.93e-179	506
Msa0739730	MtrunA17_Chr5g0439641	61.827	427	143	8	1	408	1	426	3.84e-178	504
Msa0739730	MtrunA17_Chr5g0439661	69.110	191	54	2	5	190	1	191	1.67e-93	279
Msa0739730	MtrunA17_Chr5g0439681	71.176	170	49	0	239	408	118	287	5.89e-79	246
Msa0739730	MtrunA17_Chr5g0401791	35.484	434	210	13	24	408	93	505	2.72e-71	233
Msa0739730	MtrunA17_Chr5g0440401	56.410	195	79	5	218	408	1	193	8.50e-66	209
Msa0739730	MtrunA17_Chr8g0354871	47.368	209	91	5	213	408	158	360	1.70e-54	185
Msa0739730	MtrunA17_Chr8g0354871	52.308	65	19	1	122	186	1	53	6.11e-13	69.7
Msa0739730	MtrunA17_Chr5g0440391	76.522	115	25	2	1	114	1	114	1.94e-54	176
Msa0739730	MtrunA17_Chr6g0452611	31.008	387	234	11	30	406	22	385	3.26e-47	166

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739730	AT3G50120.1	34.532	417	232	10	24	408	95	502	1.90e-74	241
Msa0739730	AT3G50170.1	34.625	413	233	12	24	407	105	509	4.96e-74	241
Msa0739730	AT3G50150.1	34.398	407	235	12	24	407	82	479	1.55e-72	236
Msa0739730	AT3G50140.1	34.634	410	227	13	29	407	110	509	2.08e-72	236
Msa0739730	AT3G50160.1	33.981	412	239	11	7	407	82	471	9.47e-72	234
Msa0739730	AT3G50130.1	33.656	413	236	9	24	407	131	534	1.81e-70	232
Msa0739730	AT3G50180.1	33.663	404	233	11	24	407	170	558	6.15e-63	213
Msa0739730	AT3G50190.1	29.782	413	253	12	7	407	76	463	1.51e-60	204
Msa0739730	AT5G22540.1	32.126	414	256	13	10	407	4	408	1.45e-55	189
Msa0739730	AT4G31980.1	30.334	389	236	12	31	408	292	656	1.29e-50	181

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Find 97 sgRNAs with CRISPR-Local

Find 443 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGTTACCTTGTTAT+CGG	0.302978	5_1:-58132797	None:intergenic
AAACCCCAAACAATTTCATT+TGG	0.324028	5_1:+58126932	Msa0739730:CDS
AACATATATACTAACTTTCT+GGG	0.368468	5_1:-58126719	None:intergenic
AACATATGAAGATCGAAACT+TGG	0.484244	5_1:+58132471	Msa0739730:CDS
AACGTATGAAGAACCGTCAT+AGG	0.532012	5_1:-58127301	None:intergenic
AACTACGTGGAGACGCTCCA+AGG	0.645173	5_1:-58132770	None:intergenic
AAGGTCCAAATGAAATTGTT+TGG	0.320013	5_1:-58126937	None:intergenic
AAGTTCTCCATTGCAATCCA+TGG	0.472099	5_1:-58132953	None:intergenic
ACAAGAGATACAATAGCCCA+TGG	0.623258	5_1:-58133063	None:intergenic
ACACTTACTTTAAGAATCCA+TGG	0.451026	5_1:+58133046	Msa0739730:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGTCTATCTAACTTTCTTT+AGG	-	chr5_1:58126749-58126768	None:intergenic	30.0%
TTAGATAGACCTTACATCTT+AGG	+	chr5_1:58126757-58126776	Msa0739730:five_prime_UTR	30.0%
ACATGGAGTTAGAAATGAAT+TGG	+	chr5_1:58126783-58126802	Msa0739730:exon	30.0%
AAACCCCAAACAATTTCATT+TGG	+	chr5_1:58126932-58126951	Msa0739730:CDS	30.0%
AGGTCCAAATGAAATTGTTT+GGG	-	chr5_1:58126939-58126958	None:intergenic	30.0%
AAGGTCCAAATGAAATTGTT+TGG	-	chr5_1:58126940-58126959	None:intergenic	30.0%
ATTCCAAAAATTGGATCAAG+TGG	+	chr5_1:58127054-58127073	Msa0739730:CDS	30.0%
AGTTTGAATTTGTGGTTCTT+GGG	-	chr5_1:58128011-58128030	None:intergenic	30.0%
ACAACAAATCAATACACAAG+TGG	+	chr5_1:58128043-58128062	Msa0739730:intron	30.0%
AAATCAATACACAAGTGGTT+AGG	+	chr5_1:58128048-58128067	Msa0739730:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	58126614	58133074	58126614	ID=Msa0739730;Name=Msa0739730
chr5_1	mRNA	58126614	58133074	58126614	ID=Msa0739730-mRNA-1;Parent=Msa0739730;Name=Msa0739730-mRNA-1;_AED=0.27;_eAED=0.27;_QI=171\|1\|0.5\|1\|1\|1\|2\|0\|408
chr5_1	exon	58126614	58127348	58126614	ID=Msa0739730-mRNA-1:exon:16573;Parent=Msa0739730-mRNA-1
chr5_1	exon	58132415	58133074	58132415	ID=Msa0739730-mRNA-1:exon:16574;Parent=Msa0739730-mRNA-1
chr5_1	five_prime_UTR	58126614	58126784	58126614	ID=Msa0739730-mRNA-1:five_prime_utr;Parent=Msa0739730-mRNA-1
chr5_1	CDS	58126785	58127348	58126785	ID=Msa0739730-mRNA-1:cds;Parent=Msa0739730-mRNA-1
chr5_1	CDS	58132415	58133074	58132415	ID=Msa0739730-mRNA-1:cds;Parent=Msa0739730-mRNA-1

Gene Sequence

>Msa0739730

ATGGAGTTAGAAATGAATTGGTTTGATCAAATCAATAAGGAGATCAAGAGCAATGCTTCTTCAATAGCTGATGAGAAGAAGCAATGGGAGAAGCATTCAATTTACAAAGTACCCTCACAAGTCACGGAGTTGAACAAAAAAGCCTACAAACCCCAAACAATTTCATTTGGACCTTACCATCATGGGGAGGACAATTTAAAGCCTATGGAAGAGCACAAGCATCGAGCCCTTCATTTCCTAAAAAGGTGTGGAAAACCAATTGAATTGATATTCCAAAAATTGGATCAAGTGGCTCAAGAGTTGAAAGACTCATATAAGTCATTTGATTCGATTTGGACACATGGCAGATCAAAGTTCATTCAAATGATGATTATTGATGGTTGTTTTATTCTAGAATTTTTGAAAGTCAGTACTCCTCTTGACTATGATCAGAAGGATCCTGTCTTTAGTTTATATGGAAAATTTTATATGATGCAATATATCGAACGTGACATGCTTATGCTTGAGAATCAGATACCTATGACGGTTCTTCATACGTTGATTCAGGTTCAAACTGGCACTGAGGACGATTATCATGAGTGGTTAAATGAGACAATCATAAATTTCTTATTATACCCAATAACATATGAAGATCGAAACTTGGGGAAATGCATGCATATACTGGACGTATACAGAAAATATGTAGTACGAGAACCAAGCCACCCACCCATCTCTAAATCAAAAAAAAGAAGTTTGTCAAGTTTAGAATTAGAAGAATATAATGTCAATCGATCTGCAATGGAGCTTAAAGAGGCTGGAATCAGCTTCAAGAAAAGCGAAACGAGGAGCCTCAGAGATGTTTCCTTCAATCGAGGTGTTCTTAGGCTCCCGCCCTTAATAGTAGTAGACAACACGGAATACATATTCCTTAACCTCATGGCCTTGGAGCGTCTCCACGTAGTTGAAGCCGATAACAAGGTAACATCTTTTGTATGCTTTATGGACACTATCATCGACAGTGCTAAAGATGTTGAAATTCTCATCCGAAGTCATATCCTAATCAACTATCTTGAGAACGATGAAGCTGTAGCCAAATTGTTCAACTCGTTGGCAAAAGAAGCCCCCATGGATTGCAATGGAGAACTTGGAGAAGTGGCGAAGAGTGTGATTTCTTACTGTAGGAAACCGTGGAAAAGATGGCGTGCAAGTCTCATTCACACTTACTTTAAGAATCCATGGGCTATT

Protein sequence

>Msa0739730

MELEMNWFDQINKEIKSNASSIADEKKQWEKHSIYKVPSQVTELNKKAYKPQTISFGPYHHGEDNLKPMEEHKHRALHFLKRCGKPIELIFQKLDQVAQELKDSYKSFDSIWTHGRSKFIQMMIIDGCFILEFLKVSTPLDYDQKDPVFSLYGKFYMMQYIERDMLMLENQIPMTVLHTLIQVQTGTEDDYHEWLNETIINFLLYPITYEDRNLGKCMHILDVYRKYVVREPSHPPISKSKKRSLSSLELEEYNVNRSAMELKEAGISFKKSETRSLRDVSFNRGVLRLPPLIVVDNTEYIFLNLMALERLHVVEADNKVTSFVCFMDTIIDSAKDVEILIRSHILINYLENDEAVAKLFNSLAKEAPMDCNGELGEVAKSVISYCRKPWKRWRASLIHTYFKNPWAI