Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462640 | KEH35864.1 | 96.899 | 129 | 4 | 0 | 1 | 129 | 195 | 323 | 9.56e-83 | 255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462640 | sp|K7QKH1|BCAT1_HUMLU | 68.217 | 129 | 41 | 0 | 1 | 129 | 265 | 393 | 5.97e-58 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462640 | A0A072V1K9 | 96.899 | 129 | 4 | 0 | 1 | 129 | 195 | 323 | 4.57e-83 | 255 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031160 | Msa1462640 | 0.816146 | 6.426892e-52 | -8.615850e-47 |
| Msa0052780 | Msa1462640 | 0.808837 | 2.545703e-50 | -8.615850e-47 |
| Msa0077370 | Msa1462640 | 0.806504 | 7.967546e-50 | -8.615850e-47 |
| Msa0083240 | Msa1462640 | 0.841512 | 4.544520e-58 | -8.615850e-47 |
| Msa0086190 | Msa1462640 | 0.803487 | 3.404948e-49 | -8.615850e-47 |
| Msa0097570 | Msa1462640 | 0.808215 | 3.455831e-50 | -8.615850e-47 |
| Msa1370080 | Msa1462640 | 0.840301 | 9.442580e-58 | -8.615850e-47 |
| Msa1401550 | Msa1462640 | 0.870271 | 1.655871e-66 | -8.615850e-47 |
| Msa1412410 | Msa1462640 | 0.852719 | 3.837642e-61 | -8.615850e-47 |
| Msa1427860 | Msa1462640 | 0.854052 | 1.590841e-61 | -8.615850e-47 |
| Msa1443220 | Msa1462640 | 0.814019 | 1.906707e-51 | -8.615850e-47 |
| Msa1462640 | Msa1465860 | 0.808037 | 3.771215e-50 | -8.615850e-47 |
| Msa0609420 | Msa1462640 | 0.873707 | 1.193921e-67 | -8.615850e-47 |
| Msa0617040 | Msa1462640 | 0.827947 | 1.180474e-54 | -8.615850e-47 |
| Msa0643520 | Msa1462640 | 0.813451 | 2.543122e-51 | -8.615850e-47 |
| Msa0650060 | Msa1462640 | 0.874981 | 4.414034e-68 | -8.615850e-47 |
| Msa0652700 | Msa1462640 | 0.825758 | 3.936179e-54 | -8.615850e-47 |
| Msa0656100 | Msa1462640 | 0.828044 | 1.118826e-54 | -8.615850e-47 |
| Msa0683000 | Msa1462640 | 0.802307 | 5.969955e-49 | -8.615850e-47 |
| Msa0692050 | Msa1462640 | 0.814645 | 1.386121e-51 | -8.615850e-47 |
| Msa0708600 | Msa1462640 | 0.828199 | 1.026481e-54 | -8.615850e-47 |
| Msa0129640 | Msa1462640 | 0.850994 | 1.184474e-60 | -8.615850e-47 |
| Msa0132430 | Msa1462640 | 0.801774 | 7.683756e-49 | -8.615850e-47 |
| Msa0143630 | Msa1462640 | 0.812097 | 5.031910e-51 | -8.615850e-47 |
| Msa0182020 | Msa1462640 | 0.809667 | 1.689200e-50 | -8.615850e-47 |
| Msa1267080 | Msa1462640 | 0.847937 | 8.430633e-60 | -8.615850e-47 |
| Msa1302340 | Msa1462640 | 0.827645 | 1.395643e-54 | -8.615850e-47 |
| Msa1339870 | Msa1462640 | 0.806530 | 7.866792e-50 | -8.615850e-47 |
| Msa0374790 | Msa1462640 | 0.855767 | 5.056491e-62 | -8.615850e-47 |
| Msa0381470 | Msa1462640 | 0.907575 | 4.370470e-81 | -8.615850e-47 |
| Msa0424000 | Msa1462640 | 0.841398 | 4.867589e-58 | -8.615850e-47 |
| Msa0458220 | Msa1462640 | 0.833304 | 5.759443e-56 | -8.615850e-47 |
| Msa0470920 | Msa1462640 | 0.849393 | 3.328324e-60 | -8.615850e-47 |
| Msa0476070 | Msa1462640 | 0.936961 | 7.496896e-98 | -8.615850e-47 |
| Msa0480770 | Msa1462640 | 0.812118 | 4.979211e-51 | -8.615850e-47 |
| Msa0481100 | Msa1462640 | 0.893434 | 6.307337e-75 | -8.615850e-47 |
| Msa0982380 | Msa1462640 | 0.850871 | 1.283173e-60 | -8.615850e-47 |
| Msa1028660 | Msa1462640 | 0.822276 | 2.582606e-53 | -8.615850e-47 |
| Msa0268070 | Msa1462640 | 0.847233 | 1.316156e-59 | -8.615850e-47 |
| Msa1152430 | Msa1462640 | 0.815630 | 8.378452e-52 | -8.615850e-47 |
| Msa1173150 | Msa1462640 | 0.807193 | 5.697995e-50 | -8.615850e-47 |
| Msa1211600 | Msa1462640 | 0.809245 | 2.081576e-50 | -8.615850e-47 |
| Msa1217260 | Msa1462640 | 0.832280 | 1.034608e-55 | -8.615850e-47 |
| Msa1217950 | Msa1462640 | 0.892789 | 1.147829e-74 | -8.615850e-47 |
| Msa1219790 | Msa1462640 | 0.849695 | 2.742222e-60 | -8.615850e-47 |
| Msa0504700 | Msa1462640 | 0.834449 | 2.978690e-56 | -8.615850e-47 |
| Msa0519910 | Msa1462640 | 0.929093 | 1.138814e-92 | -8.615850e-47 |
| Msa0577370 | Msa1462640 | 0.834600 | 2.728451e-56 | -8.615850e-47 |
| Msa0580850 | Msa1462640 | 0.815042 | 1.131944e-51 | -8.615850e-47 |
| Msa0602180 | Msa1462640 | 0.835201 | 1.926291e-56 | -8.615850e-47 |
| Msa0945230 | Msa1462640 | 0.809209 | 2.118226e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462640 | MtrunA17_Chr3g0135321 | 96.899 | 129 | 4 | 0 | 1 | 129 | 259 | 387 | 3.41e-86 | 256 |
| Msa1462640 | MtrunA17_Chr4g0049231 | 61.240 | 129 | 50 | 0 | 1 | 129 | 229 | 357 | 3.54e-51 | 165 |
| Msa1462640 | MtrunA17_Chr5g0400811 | 58.594 | 128 | 53 | 0 | 1 | 128 | 280 | 407 | 3.20e-46 | 154 |
| Msa1462640 | MtrunA17_Chr4g0049241 | 56.589 | 129 | 56 | 0 | 1 | 129 | 276 | 404 | 7.70e-41 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462640 | AT1G10070.3 | 68.217 | 129 | 41 | 0 | 1 | 129 | 190 | 318 | 3.39e-59 | 185 |
| Msa1462640 | AT1G10070.1 | 68.217 | 129 | 41 | 0 | 1 | 129 | 260 | 388 | 1.40e-58 | 186 |
| Msa1462640 | AT1G10070.2 | 68.217 | 129 | 41 | 0 | 1 | 129 | 260 | 388 | 1.40e-58 | 186 |
| Msa1462640 | AT1G10060.3 | 63.780 | 127 | 46 | 0 | 1 | 127 | 190 | 316 | 1.30e-53 | 171 |
| Msa1462640 | AT1G10060.2 | 63.780 | 127 | 46 | 0 | 1 | 127 | 256 | 382 | 7.30e-53 | 171 |
| Msa1462640 | AT1G10060.5 | 63.780 | 127 | 46 | 0 | 1 | 127 | 352 | 478 | 4.63e-52 | 171 |
| Msa1462640 | AT1G50110.2 | 52.713 | 129 | 61 | 0 | 1 | 129 | 189 | 317 | 1.25e-46 | 153 |
| Msa1462640 | AT1G50110.1 | 52.713 | 129 | 61 | 0 | 1 | 129 | 224 | 352 | 2.20e-46 | 153 |
| Msa1462640 | AT1G50090.1 | 54.264 | 129 | 59 | 0 | 1 | 129 | 227 | 355 | 9.08e-46 | 152 |
| Msa1462640 | AT3G49680.1 | 58.915 | 129 | 52 | 1 | 1 | 128 | 284 | 412 | 2.96e-44 | 149 |
| Msa1462640 | AT3G49680.2 | 58.915 | 129 | 52 | 1 | 1 | 128 | 282 | 410 | 3.03e-44 | 149 |
| Msa1462640 | AT5G65780.1 | 57.364 | 129 | 54 | 1 | 1 | 128 | 286 | 414 | 8.31e-44 | 148 |
| Msa1462640 | AT3G19710.1 | 46.512 | 129 | 69 | 0 | 1 | 129 | 223 | 351 | 1.65e-39 | 135 |
| Msa1462640 | AT1G10060.4 | 70.652 | 92 | 27 | 0 | 1 | 92 | 352 | 443 | 5.52e-39 | 136 |
| Msa1462640 | AT1G10060.7 | 70.652 | 92 | 27 | 0 | 1 | 92 | 256 | 347 | 2.61e-38 | 133 |
| Msa1462640 | AT1G10060.6 | 65.854 | 41 | 14 | 0 | 1 | 41 | 352 | 392 | 1.18e-11 | 60.8 |
| Msa1462640 | AT1G10060.1 | 65.854 | 41 | 14 | 0 | 1 | 41 | 256 | 296 | 3.12e-11 | 59.3 |
Find 25 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCACTTTACCTTCTATTC+TGG | 0.200728 | tig0042483:+10409 | Msa1462640:intergenic |
| ACCTGTTTGTATTCCTAAAA+TGG | 0.255480 | tig0042483:+10034 | Msa1462640:intergenic |
| TGCCAGTGATTTGGGTTATC+AGG | 0.275271 | tig0042483:-11828 | Msa1462640:intron |
| CATTGAAATTGCCAGTGATT+TGG | 0.302811 | tig0042483:-11837 | Msa1462640:CDS |
| TCTTGTGATTCCGGAAAGTA+TGG | 0.340136 | tig0042483:+11868 | Msa1462640:intergenic |
| ATCAATGGAACCATACTTTC+CGG | 0.356234 | tig0042483:-11878 | Msa1462640:CDS |
| ATTGAAATTGCCAGTGATTT+GGG | 0.377285 | tig0042483:-11836 | Msa1462640:CDS |
| GTGGACTATAAAACAGGTTC+TGG | 0.405793 | tig0042483:-10083 | Msa1462640:CDS |
| ATTGATAGCAGGTGTTGAAA+TGG | 0.440308 | tig0042483:+11895 | Msa1462640:intergenic |
| AGGTAGTATTGAAGATAAGA+AGG | 0.442292 | tig0042483:-10015 | Msa1462640:CDS |
| CTTGCACAACTCTTGACAAA+TGG | 0.449586 | tig0042483:+10058 | Msa1462640:intergenic |
| GTATCACATACCAGAATAGA+AGG | 0.460502 | tig0042483:-10419 | Msa1462640:intron |
| TGCAGGGTGGACTATAAAAC+AGG | 0.473120 | tig0042483:-10089 | Msa1462640:intron |
| ATTTCAACACCTGCTATCAA+TGG | 0.483444 | tig0042483:-11893 | Msa1462640:CDS |
| GCTGTCGGTGTTGCTCCTGT+AGG | 0.514968 | tig0042483:-10444 | Msa1462640:CDS |
| CTGTCGGTGTTGCTCCTGTA+GGG | 0.530130 | tig0042483:-10443 | Msa1462640:CDS |
| TTCTGTACAGGAACTGCTGT+CGG | 0.530561 | tig0042483:-10459 | Msa1462640:CDS |
| GGTAGTATTGAAGATAAGAA+GGG | 0.530796 | tig0042483:-10014 | Msa1462640:CDS |
| TACCTGATAACCCAAATCAC+TGG | 0.560844 | tig0042483:+11826 | Msa1462640:intergenic |
| TGGTATGTGATACTCCCTAC+AGG | 0.561876 | tig0042483:+10429 | Msa1462640:intergenic |
| AGTATGGTTCCATTGATAGC+AGG | 0.575714 | tig0042483:+11884 | Msa1462640:intergenic |
| ACAGAAAACTTCATCTGCCT+CGG | 0.585007 | tig0042483:+10476 | Msa1462640:intergenic |
| GGAAGAGCGCGTTGTTGCTG+TGG | 0.591202 | tig0042483:-10508 | Msa1462640:CDS |
| GTATTGAAGATAAGAAGGGA+TGG | 0.616637 | tig0042483:-10010 | Msa1462640:CDS |
| TGCTGTGGATGAATTGACCG+AGG | 0.715955 | tig0042483:-10493 | Msa1462640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATATATAAATAGAAAAAT+TGG | + | tig0042483:11914-11933 | Msa1462640:intergenic | 10.0% |
| !! | ATAAAAAAAAGTAAACTATA+AGG | - | tig0042483:12138-12157 | Msa1462640:intron | 10.0% |
| !!! | TTTTTTTTATTAAAGAGGTA+AGG | - | tig0042483:10081-10100 | Msa1462640:CDS | 15.0% |
| !!! | TTTATTTAAATTCTGGTTTT+CGG | - | tig0042483:10438-10457 | Msa1462640:CDS | 15.0% |
| !! | ATGTATTCTATAATTTCTAT+TGG | + | tig0042483:11229-11248 | Msa1462640:intergenic | 15.0% |
| !! | TCATAATAGAACTAATTATA+AGG | - | tig0042483:11365-11384 | Msa1462640:intron | 15.0% |
| !!! | AACATTTTTATTAGATACAA+AGG | - | tig0042483:12111-12130 | Msa1462640:intron | 15.0% |
| !!! | TTTATCTAGATAGAAAATTT+TGG | + | tig0042483:12233-12252 | Msa1462640:intergenic | 15.0% |
| !! | ATATATATCAACAATATTTC+AGG | + | tig0042483:12376-12395 | Msa1462640:intergenic | 15.0% |
| !! | TTGATATATATATATATGCA+GGG | - | tig0042483:12385-12404 | Msa1462640:intron | 15.0% |
| !! | TTCGACATTAAAAATTCTTT+CGG | + | tig0042483:10864-10883 | Msa1462640:intergenic | 20.0% |
| !!! | TTCATTTCTTTTGTGTAAAA+AGG | + | tig0042483:11037-11056 | Msa1462640:intergenic | 20.0% |
| !!! | TTTTTACACAAAAGAAATGA+AGG | - | tig0042483:11036-11055 | Msa1462640:intron | 20.0% |
| !!! | TGAATCATCTAAAATTATCA+TGG | + | tig0042483:11114-11133 | Msa1462640:intergenic | 20.0% |
| !! | AGAATACATATTGTATATTG+TGG | - | tig0042483:11240-11259 | Msa1462640:intron | 20.0% |
| !!! | ATTTTCAGGACATAATTTTT+AGG | + | tig0042483:11762-11781 | Msa1462640:intergenic | 20.0% |
| !!! | TTTATTGATTAAGACCAAAT+CGG | - | tig0042483:11952-11971 | Msa1462640:intron | 20.0% |
| !!! | TATCAACCTTTTTATTTTGA+AGG | - | tig0042483:12254-12273 | Msa1462640:intron | 20.0% |
| !! | TATCTTCCTTCAAAATAAAA+AGG | + | tig0042483:12263-12282 | Msa1462640:intergenic | 20.0% |
| !! | GTTGATATATATATATATGC+AGG | - | tig0042483:12384-12403 | Msa1462640:intron | 20.0% |
| !! | TTTTCTTACTGTTTGAATCA+AGG | + | tig0042483:9997-10016 | Msa1086940:intergenic | 25.0% |
| ! | TTCAAACAGTAAGAAAAATC+TGG | - | tig0042483:10000-10019 | Msa1462640:CDS | 25.0% |
| !! | TTGTAACATTTTTATTGCCA+AGG | - | tig0042483:10036-10055 | Msa1462640:CDS | 25.0% |
| ! | AATTGATTGGAATAATACCT+TGG | + | tig0042483:10056-10075 | Msa1462640:intergenic | 25.0% |
| !! | TACATAGTGTAACAAACTTT+TGG | + | tig0042483:10317-10336 | Msa1462640:intergenic | 25.0% |
| ! | ATGTACTTTGCTAAAAACTA+AGG | - | tig0042483:10332-10351 | Msa1462640:intron | 25.0% |
| !! | TTGTAAGATATAGAAAGCAT+AGG | - | tig0042483:10414-10433 | Msa1462640:intron | 25.0% |
| !! | TGTAAGATATAGAAAGCATA+GGG | - | tig0042483:10415-10434 | Msa1462640:intron | 25.0% |
| ! | CATAGGGTTTATTTAAATTC+TGG | - | tig0042483:10431-10450 | Msa1462640:CDS | 25.0% |
| ! | AACTTGGATTTCAATTTCTT+AGG | - | tig0042483:10566-10585 | Msa1462640:intron | 25.0% |
| ! | ACTTGGATTTCAATTTCTTA+GGG | - | tig0042483:10567-10586 | Msa1462640:intron | 25.0% |
| !! | TTCTTTTGTGTAAAAAGGTT+CGG | + | tig0042483:11032-11051 | Msa1462640:intergenic | 25.0% |
| !! | TTTTGTTCTTTTGTTGCTAA+AGG | + | tig0042483:11076-11095 | Msa1462640:intergenic | 25.0% |
| ! | TACATATTGTATATTGTGGT+TGG | - | tig0042483:11244-11263 | Msa1462640:intron | 25.0% |
| ! | AAGCTATTCTTTAGATTGAT+TGG | - | tig0042483:11292-11311 | Msa1462640:intron | 25.0% |
| ! | TGAAATTCATATCATAAGTG+TGG | - | tig0042483:11413-11432 | Msa1462640:intron | 25.0% |
| !!! | ATAATTTTTAGGACTGTGAT+AGG | + | tig0042483:11751-11770 | Msa1462640:intergenic | 25.0% |
| !! | TTTGATTCTGCTTAATTTTC+AGG | + | tig0042483:11776-11795 | Msa1462640:intergenic | 25.0% |
| ! | ATTAAGCAGAATCAAATGAA+TGG | - | tig0042483:11780-11799 | Msa1462640:intron | 25.0% |
| !! | AACGCTTTCATATCATATTT+TGG | - | tig0042483:11884-11903 | Msa1462640:CDS | 25.0% |
| ! | AACAATATTTCAGGAAAACT+TGG | + | tig0042483:12367-12386 | Msa1462640:intergenic | 25.0% |
| ! | ATATATATATATATGCAGGG+TGG | - | tig0042483:12388-12407 | Msa1462640:intron | 25.0% |
| AAACAGTAAGAAAAATCTGG+AGG | - | tig0042483:10003-10022 | Msa1462640:CDS | 30.0% | |
| CTTTGCTAAAAACTAAGGAT+TGG | - | tig0042483:10337-10356 | Msa1462640:intron | 30.0% | |
| AAAACTAAGGATTGGAATGA+AGG | - | tig0042483:10345-10364 | Msa1462640:intron | 30.0% | |
| AAACTAAGGATTGGAATGAA+GGG | - | tig0042483:10346-10365 | Msa1462640:intron | 30.0% | |
| ATTGAAATTGCCAGTGATTT+GGG | - | tig0042483:10654-10673 | Msa1462640:intron | 30.0% | |
| CTACAAAGATGAAACGATTA+TGG | + | tig0042483:10698-10717 | Msa1462640:intergenic | 30.0% | |
| TAATTCAGATAGAAACCAGA+AGG | + | tig0042483:10765-10784 | Msa1462640:intergenic | 30.0% | |
| AAGAAAATAAATTGCGAACC+AGG | - | tig0042483:10998-11017 | Msa1462640:intron | 30.0% | |
| ! | TCTTTTGTGTAAAAAGGTTC+GGG | + | tig0042483:11031-11050 | Msa1462640:intergenic | 30.0% |
| ACAAAAGAACAAAAACTGAG+AGG | - | tig0042483:11082-11101 | Msa1462640:intron | 30.0% | |
| ! | TCATCTAAAATTATCATGGC+AGG | + | tig0042483:11110-11129 | Msa1462640:intergenic | 30.0% |
| ! | ATTTCTATTGGTTGAGTTCA+TGG | + | tig0042483:11217-11236 | Msa1462640:intergenic | 30.0% |
| AGAGTATATTGTCTTAACTG+AGG | + | tig0042483:11339-11358 | Msa1462640:intergenic | 30.0% | |
| CATGATCGATCATATGAATT+TGG | - | tig0042483:11549-11568 | Msa1462640:intron | 30.0% | |
| AAACTAAGTAAGTGTCCTAT+CGG | + | tig0042483:11579-11598 | Msa1462640:intergenic | 30.0% | |
| !!! | TGGTAACTTTAGCTCTTTTT+TGG | - | tig0042483:11800-11819 | Msa1462640:intron | 30.0% |
| ! | GGACTTTTCTAATAATTCTG+TGG | + | tig0042483:11837-11856 | Msa1462640:intergenic | 30.0% |
| !! | AAGTGGGTTAATGTTATGTT+AGG | + | tig0042483:11858-11877 | Msa1462640:intergenic | 30.0% |
| !! | ACCATTTTAGGAATACAAAC+AGG | - | tig0042483:12455-12474 | Msa1462640:CDS | 30.0% |
| ACCTGTTTGTATTCCTAAAA+TGG | + | tig0042483:12459-12478 | Msa1462640:intergenic | 30.0% | |
| ! | AGGTAGTATTGAAGATAAGA+AGG | - | tig0042483:12475-12494 | Msa1462640:CDS | 30.0% |
| ! | GGTAGTATTGAAGATAAGAA+GGG | - | tig0042483:12476-12495 | Msa1462640:CDS | 30.0% |
| AACTAAGGATTGGAATGAAG+GGG | - | tig0042483:10347-10366 | Msa1462640:intron | 35.0% | |
| !! | ATTGATAGCAGGTGTTGAAA+TGG | + | tig0042483:10598-10617 | Msa1462640:intergenic | 35.0% |
| ATTTCAACACCTGCTATCAA+TGG | - | tig0042483:10597-10616 | Msa1462640:intron | 35.0% | |
| ATCAATGGAACCATACTTTC+CGG | - | tig0042483:10612-10631 | Msa1462640:intron | 35.0% | |
| !!! | GACACTTTTTCTTGTGATTC+CGG | + | tig0042483:10634-10653 | Msa1462640:intergenic | 35.0% |
| CATTGAAATTGCCAGTGATT+TGG | - | tig0042483:10653-10672 | Msa1462640:intron | 35.0% | |
| TTCATCTTTGTAGCTGCTAT+AGG | - | tig0042483:10705-10724 | Msa1462640:intron | 35.0% | |
| ! | TTCTGCATTTTGTTACCTTC+TGG | - | tig0042483:10747-10766 | Msa1462640:intron | 35.0% |
| TAAATTGCGAACCAGGATTA+AGG | - | tig0042483:11005-11024 | Msa1462640:intron | 35.0% | |
| AAAGAAATGAAGGAAGCCTA+AGG | - | tig0042483:11046-11065 | Msa1462640:intron | 35.0% | |
| ! | AATTTCAAGCACTGTGTTTC+TGG | + | tig0042483:11400-11419 | Msa1462640:intergenic | 35.0% |
| ! | TATGAATTTGGAACACCGAT+AGG | - | tig0042483:11561-11580 | Msa1462640:intron | 35.0% |
| TCCGATAACTCAGTTTCAAT+GGG | - | tig0042483:11645-11664 | Msa1462640:intron | 35.0% | |
| TCCCATTGAAACTGAGTTAT+CGG | + | tig0042483:11649-11668 | Msa1462640:intergenic | 35.0% | |
| ATTGTGTTATGTGACTGCAA+AGG | - | tig0042483:11686-11705 | Msa1462640:intron | 35.0% | |
| TTGTGTTATGTGACTGCAAA+GGG | - | tig0042483:11687-11706 | Msa1462640:intron | 35.0% | |
| !! | TGAAAGCGTTGCAAAAAAGT+GGG | + | tig0042483:11874-11893 | Msa1462640:intergenic | 35.0% |
| !! | ATGAAAGCGTTGCAAAAAAG+TGG | + | tig0042483:11875-11894 | Msa1462640:intergenic | 35.0% |
| GTATCACATACCAGAATAGA+AGG | - | tig0042483:12071-12090 | Msa1462640:intron | 35.0% | |
| CATCACTTTACCTTCTATTC+TGG | + | tig0042483:12084-12103 | Msa1462640:intergenic | 35.0% | |
| CAGAATAGAAGGTAAAGTGA+TGG | - | tig0042483:12082-12101 | Msa1462640:intron | 35.0% | |
| !! | TAGAAGGTAAAGTGATGGAT+TGG | - | tig0042483:12087-12106 | Msa1462640:intron | 35.0% |
| CAAAACACTAGTAATATCCC+CGG | - | tig0042483:12326-12345 | Msa1462640:intron | 35.0% | |
| GTATTGAAGATAAGAAGGGA+TGG | - | tig0042483:12480-12499 | Msa1462640:CDS | 35.0% | |
| CAGTAAGAAAAATCTGGAGG+AGG | - | tig0042483:10006-10025 | Msa1462640:CDS | 40.0% | |
| CAAGCTGACATGAGTATACA+TGG | - | tig0042483:10199-10218 | Msa1462640:intron | 40.0% | |
| ACTAAGGATTGGAATGAAGG+GGG | - | tig0042483:10348-10367 | Msa1462640:intron | 40.0% | |
| CAGTTAGAACATGCACAACT+AGG | + | tig0042483:10487-10506 | Msa1462640:intergenic | 40.0% | |
| TGTGCATGTTCTAACTGATC+TGG | - | tig0042483:10490-10509 | Msa1462640:CDS | 40.0% | |
| CTATCTGTTATATCTGCGAC+TGG | - | tig0042483:10536-10555 | Msa1462640:intron | 40.0% | |
| ! | AGTATGGTTCCATTGATAGC+AGG | + | tig0042483:10609-10628 | Msa1462640:intergenic | 40.0% |
| TCTTGTGATTCCGGAAAGTA+TGG | + | tig0042483:10625-10644 | Msa1462640:intergenic | 40.0% | |
| TACCTGATAACCCAAATCAC+TGG | + | tig0042483:10667-10686 | Msa1462640:intergenic | 40.0% | |
| TGTTGCTAAAGGATAGCCTT+AGG | + | tig0042483:11065-11084 | Msa1462640:intergenic | 40.0% | |
| AGAGAACTCGGAGAAAAAGT+AGG | + | tig0042483:11471-11490 | Msa1462640:intergenic | 40.0% | |
| TGACCATACATGAGAGAACT+CGG | + | tig0042483:11483-11502 | Msa1462640:intergenic | 40.0% | |
| CTCCGATAACTCAGTTTCAA+TGG | - | tig0042483:11644-11663 | Msa1462640:intron | 40.0% | |
| ! | AGGTGTCTATCGTTAAGTTG+CGG | + | tig0042483:11731-11750 | Msa1462640:intergenic | 40.0% |
| ! | GATTAAGACCAAATCGGTTC+AGG | - | tig0042483:11958-11977 | Msa1462640:intron | 40.0% |
| ACAGAAAACTTCATCTGCCT+CGG | + | tig0042483:12017-12036 | Msa1462640:intergenic | 40.0% | |
| ! | GCAGATGAAGTTTTCTGTAC+AGG | - | tig0042483:12019-12038 | Msa1462640:intron | 40.0% |
| ! | GTGGACTATAAAACAGGTTC+TGG | - | tig0042483:12407-12426 | Msa1462640:intron | 40.0% |
| CTTGCACAACTCTTGACAAA+TGG | + | tig0042483:12435-12454 | Msa1462640:intergenic | 40.0% | |
| ! | GAGTTGTGCAAGACCATTTT+AGG | - | tig0042483:12443-12462 | Msa1462640:intron | 40.0% |
| ATGGAAAAGTTCAGAGCCAG+AGG | - | tig0042483:10218-10237 | Msa1462640:intron | 45.0% | |
| ! | AGCCAGAGGTTCTGATGATA+GGG | - | tig0042483:10232-10251 | Msa1462640:intron | 45.0% |
| AACCCTATCATCAGAACCTC+TGG | + | tig0042483:10237-10256 | Msa1462640:intergenic | 45.0% | |
| CTAAGGATTGGAATGAAGGG+GGG | - | tig0042483:10349-10368 | Msa1462640:intron | 45.0% | |
| TAAGGATTGGAATGAAGGGG+GGG | - | tig0042483:10350-10369 | Msa1462640:intron | 45.0% | |
| ! | TGCGACTGGTCAATCTAACT+TGG | - | tig0042483:10550-10569 | Msa1462640:intron | 45.0% |
| ! | TGCCAGTGATTTGGGTTATC+AGG | - | tig0042483:10662-10681 | Msa1462640:intron | 45.0% |
| TCTCCGAGTTCTCTCATGTA+TGG | - | tig0042483:11477-11496 | Msa1462640:intron | 45.0% | |
| AGTTATCGGAGCGTGAGATT+GGG | + | tig0042483:11635-11654 | Msa1462640:intergenic | 45.0% | |
| ! | GTTAAGTTGCGGTGAATTCG+AGG | + | tig0042483:11720-11739 | Msa1462640:intergenic | 45.0% |
| ! | TAAGACCAAATCGGTTCAGG+TGG | - | tig0042483:11961-11980 | Msa1462640:intron | 45.0% |
| TTCTGTACAGGAACTGCTGT+CGG | - | tig0042483:12031-12050 | Msa1462640:intron | 45.0% | |
| TGGTATGTGATACTCCCTAC+AGG | + | tig0042483:12064-12083 | Msa1462640:intergenic | 45.0% | |
| !! | TGCAGGGTGGACTATAAAAC+AGG | - | tig0042483:12401-12420 | Msa1462640:intron | 45.0% |
| !! | AAAAAAAAATAAAAATTGAT+TGG | + | tig0042483:10069-10088 | Msa1462640:intergenic | 5.0% |
| !!! | TTTATTTTTTTTTATTAAAG+AGG | - | tig0042483:10076-10095 | Msa1462640:CDS | 5.0% |
| ! | GAGCCAGAGGTTCTGATGAT+AGG | - | tig0042483:10231-10250 | Msa1462640:intron | 50.0% |
| AAGGATTGGAATGAAGGGGG+GGG | - | tig0042483:10351-10370 | Msa1462640:intron | 50.0% | |
| AAAGGTTCGGGCCTTAATCC+TGG | + | tig0042483:11019-11038 | Msa1462640:intergenic | 50.0% | |
| GAGTTATCGGAGCGTGAGAT+TGG | + | tig0042483:11636-11655 | Msa1462640:intergenic | 50.0% | |
| GTTGCGGTGAATTCGAGGTT+AGG | + | tig0042483:11715-11734 | Msa1462640:intergenic | 50.0% | |
| CTCTTCCACCTGAACCGATT+TGG | + | tig0042483:11969-11988 | Msa1462640:intergenic | 50.0% | |
| TGCTGTGGATGAATTGACCG+AGG | - | tig0042483:11997-12016 | Msa1462640:intron | 50.0% | |
| CAGGAAAACTTGGACTCGTG+AGG | + | tig0042483:12357-12376 | Msa1462640:intergenic | 50.0% | |
| CACAGACTCGCAGTCACAAC+TGG | - | tig0042483:11505-11524 | Msa1462640:intron | 55.0% | |
| !! | CTGTCGGTGTTGCTCCTGTA+GGG | - | tig0042483:12047-12066 | Msa1462640:intron | 55.0% |
| ! | GGAAGAGCGCGTTGTTGCTG+TGG | - | tig0042483:11982-12001 | Msa1462640:intron | 60.0% |
| !! | GCTGTCGGTGTTGCTCCTGT+AGG | - | tig0042483:12046-12065 | Msa1462640:intron | 60.0% |
| TTGGACTCGTGAGGCACGTC+CGG | + | tig0042483:12348-12367 | Msa1462640:intergenic | 60.0% | |
| TGGACTCGTGAGGCACGTCC+GGG | + | tig0042483:12347-12366 | Msa1462640:intergenic | 65.0% | |
| GGACTCGTGAGGCACGTCCG+GGG | + | tig0042483:12346-12365 | Msa1462640:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0042483 | gene | 9992 | 12520 | 9992 | ID=Msa1462640;Name=Msa1462640 |
| tig0042483 | mRNA | 9992 | 12520 | 9992 | ID=Msa1462640-mRNA-1;Parent=Msa1462640;Name=Msa1462640-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.5|1|0.33|0.75|4|0|129 |
| tig0042483 | exon | 12455 | 12520 | 12455 | ID=Msa1462640-mRNA-1:exon:23756;Parent=Msa1462640-mRNA-1 |
| tig0042483 | exon | 11829 | 11924 | 11829 | ID=Msa1462640-mRNA-1:exon:23755;Parent=Msa1462640-mRNA-1 |
| tig0042483 | exon | 10420 | 10532 | 10420 | ID=Msa1462640-mRNA-1:exon:23754;Parent=Msa1462640-mRNA-1 |
| tig0042483 | exon | 9992 | 10106 | 9992 | ID=Msa1462640-mRNA-1:exon:23753;Parent=Msa1462640-mRNA-1 |
| tig0042483 | CDS | 12455 | 12520 | 12455 | ID=Msa1462640-mRNA-1:cds;Parent=Msa1462640-mRNA-1 |
| tig0042483 | CDS | 11829 | 11924 | 11829 | ID=Msa1462640-mRNA-1:cds;Parent=Msa1462640-mRNA-1 |
| tig0042483 | CDS | 10420 | 10532 | 10420 | ID=Msa1462640-mRNA-1:cds;Parent=Msa1462640-mRNA-1 |
| tig0042483 | CDS | 9992 | 10106 | 9992 | ID=Msa1462640-mRNA-1:cds;Parent=Msa1462640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
