Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374790 | XP_013461349.1 | 95.588 | 476 | 11 | 4 | 1 | 474 | 1 | 468 | 0.0 | 934 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374790 | sp|Q9LPL5|ODBA1_ARATH | 66.316 | 475 | 153 | 5 | 3 | 474 | 2 | 472 | 0.0 | 660 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374790 | A0A072V066 | 95.588 | 476 | 11 | 4 | 1 | 474 | 1 | 468 | 0.0 | 934 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031160 | Msa0374790 | 0.814684 | 1.358831e-51 | -8.615850e-47 |
| Msa0143630 | Msa0374790 | 0.874279 | 7.645916e-68 | -8.615850e-47 |
| Msa0374790 | Msa0424000 | 0.957757 | 1.251869e-115 | -8.615850e-47 |
| Msa0374790 | Msa0470920 | 0.945911 | 1.255526e-104 | -8.615850e-47 |
| Msa0374790 | Msa0476070 | 0.824422 | 8.142041e-54 | -8.615850e-47 |
| Msa0374790 | Msa0481100 | 0.885987 | 5.060435e-72 | -8.615850e-47 |
| Msa0374790 | Msa0519910 | 0.810438 | 1.152497e-50 | -8.615850e-47 |
| Msa0374790 | Msa0580850 | 0.879477 | 1.207079e-69 | -8.615850e-47 |
| Msa0374790 | Msa0602180 | 0.843252 | 1.570552e-58 | -8.615850e-47 |
| Msa0374790 | Msa0643520 | 0.826687 | 2.366341e-54 | -8.615850e-47 |
| Msa0374790 | Msa0683000 | 0.818018 | 2.439723e-52 | -8.615850e-47 |
| Msa0374790 | Msa0982380 | 0.990444 | 1.153054e-182 | -8.615850e-47 |
| Msa0374790 | Msa1211600 | 0.874448 | 6.701759e-68 | -8.615850e-47 |
| Msa0374790 | Msa1217950 | 0.886914 | 2.257320e-72 | -8.615850e-47 |
| Msa0374790 | Msa1219790 | 0.818783 | 1.637262e-52 | -8.615850e-47 |
| Msa0374790 | Msa1267080 | 0.818045 | 2.405575e-52 | -8.615850e-47 |
| Msa0374790 | Msa1339870 | 0.867636 | 1.182255e-65 | -8.615850e-47 |
| Msa0374790 | Msa1401550 | 0.825403 | 4.778784e-54 | -8.615850e-47 |
| Msa0374790 | Msa1462640 | 0.855767 | 5.056491e-62 | -8.615850e-47 |
| Msa0268070 | Msa0374790 | 0.816054 | 6.740189e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374790 | MtrunA17_Chr3g0125611 | 95.588 | 476 | 11 | 4 | 1 | 474 | 1 | 468 | 0.0 | 934 |
| Msa0374790 | MtrunA17_Chr3g0130311 | 69.949 | 396 | 119 | 0 | 79 | 474 | 54 | 449 | 0.0 | 620 |
| Msa0374790 | MtrunA17_Chr8g0371741 | 64.516 | 155 | 32 | 2 | 312 | 466 | 58 | 189 | 2.48e-52 | 175 |
| Msa0374790 | MtrunA17_Chr8g0364201 | 29.231 | 325 | 220 | 4 | 125 | 445 | 58 | 376 | 2.36e-41 | 152 |
| Msa0374790 | MtrunA17_Chr5g0414991 | 30.000 | 280 | 193 | 2 | 166 | 445 | 100 | 376 | 1.25e-38 | 144 |
| Msa0374790 | MtrunA17_Chr8g0345911 | 26.567 | 335 | 232 | 4 | 119 | 441 | 69 | 401 | 3.78e-33 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374790 | AT1G21400.1 | 66.316 | 475 | 153 | 5 | 3 | 474 | 2 | 472 | 0.0 | 660 |
| Msa0374790 | AT1G21400.5 | 66.316 | 475 | 153 | 5 | 3 | 474 | 54 | 524 | 0.0 | 660 |
| Msa0374790 | AT1G21400.3 | 74.300 | 393 | 101 | 0 | 82 | 474 | 5 | 397 | 0.0 | 644 |
| Msa0374790 | AT5G09300.1 | 67.285 | 431 | 138 | 1 | 44 | 474 | 45 | 472 | 0.0 | 630 |
| Msa0374790 | AT5G09300.2 | 71.139 | 395 | 114 | 0 | 80 | 474 | 7 | 401 | 0.0 | 626 |
| Msa0374790 | AT1G21400.4 | 73.947 | 380 | 99 | 0 | 95 | 474 | 1 | 380 | 0.0 | 619 |
| Msa0374790 | AT1G21400.2 | 73.947 | 380 | 99 | 0 | 95 | 474 | 1 | 380 | 0.0 | 619 |
| Msa0374790 | AT5G09300.3 | 69.745 | 314 | 92 | 1 | 44 | 357 | 45 | 355 | 6.03e-165 | 470 |
| Msa0374790 | AT1G21400.6 | 64.821 | 307 | 101 | 5 | 8 | 311 | 59 | 361 | 3.28e-141 | 410 |
| Msa0374790 | AT5G09300.4 | 66.914 | 269 | 86 | 1 | 44 | 312 | 45 | 310 | 2.83e-133 | 389 |
| Msa0374790 | AT5G34780.1 | 75.829 | 211 | 51 | 0 | 258 | 468 | 26 | 236 | 8.89e-108 | 324 |
| Msa0374790 | AT1G59900.2 | 27.692 | 325 | 225 | 4 | 125 | 445 | 52 | 370 | 2.67e-39 | 146 |
| Msa0374790 | AT1G59900.1 | 27.439 | 328 | 228 | 4 | 122 | 445 | 49 | 370 | 3.79e-39 | 146 |
| Msa0374790 | AT1G24180.1 | 25.846 | 325 | 231 | 4 | 125 | 445 | 56 | 374 | 4.51e-36 | 138 |
| Msa0374790 | AT1G01090.1 | 25.994 | 327 | 227 | 5 | 127 | 441 | 79 | 402 | 1.19e-29 | 120 |
Find 117 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGAAACACAAATGATTT+TGG | 0.179644 | 3_1:-74310882 | Msa0374790:CDS |
| CGCTGCTTATTCGCTTAAAA+TGG | 0.185602 | 3_1:-74310660 | Msa0374790:CDS |
| CCTATAATAAAATGCTATAA+TGG | 0.240641 | 3_1:+74314880 | None:intergenic |
| GTACAAATGGTTATTTGAAT+TGG | 0.266050 | 3_1:+74309489 | None:intergenic |
| CTTTGAAGGTGCTGGTGATT+AGG | 0.280461 | 3_1:+74314779 | None:intergenic |
| CAATTTGCTCATCAATGCTT+TGG | 0.310829 | 3_1:-74310900 | Msa0374790:CDS |
| CCTGGACCTTCTCAATAATA+AGG | 0.321938 | 3_1:+74314811 | None:intergenic |
| GTATCTATGTCTTACGCAAT+AGG | 0.330119 | 3_1:+74310795 | None:intergenic |
| AACATCAGAAGGGTAATCTT+TGG | 0.337903 | 3_1:+74309527 | None:intergenic |
| CTCATCAATTGGTCTGTACT+TGG | 0.357544 | 3_1:+74309918 | None:intergenic |
| TCAGAATGTAAAATAAAGTT+GGG | 0.378426 | 3_1:-74309454 | Msa0374790:three_prime_UTR |
| CTATAATAAAATGCTATAAT+GGG | 0.383565 | 3_1:+74314881 | None:intergenic |
| AACATGATTGGTGTGTTTCA+TGG | 0.386194 | 3_1:+74311612 | None:intergenic |
| TATCTATGTCTTACGCAATA+GGG | 0.387172 | 3_1:+74310796 | None:intergenic |
| CAATTGATGAGATTGAATAT+TGG | 0.399761 | 3_1:-74309906 | Msa0374790:CDS |
| TCCTTCTACCTCACCTCAAT+GGG | 0.406472 | 3_1:-74311412 | Msa0374790:CDS |
| TGATGATATTATCTTGCCTC+AGG | 0.408765 | 3_1:-74311347 | Msa0374790:intron |
| GATGGTCACTCTTCAAACTA+TGG | 0.409967 | 3_1:-74311473 | Msa0374790:CDS |
| AGCTAGCCAGCTTACTTTGA+AGG | 0.410513 | 3_1:+74314765 | None:intergenic |
| TCCCATTGAGGTGAGGTAGA+AGG | 0.412039 | 3_1:+74311411 | None:intergenic |
| CAATATTCAATCTCATCAAT+TGG | 0.421389 | 3_1:+74309907 | None:intergenic |
| GTCAGAATGTAAAATAAAGT+TGG | 0.424656 | 3_1:-74309455 | Msa0374790:three_prime_UTR |
| TTCCTTCTACCTCACCTCAA+TGG | 0.425377 | 3_1:-74311413 | Msa0374790:CDS |
| GTGGAGTGACAAGGATGAAT+TGG | 0.426460 | 3_1:-74309827 | Msa0374790:CDS |
| ACATCAGAAGGGTAATCTTT+GGG | 0.439203 | 3_1:+74309528 | None:intergenic |
| CCAGCTTACTTTGAAGGTGC+TGG | 0.439279 | 3_1:+74314771 | None:intergenic |
| AAGGTCAAGCTTATGGAATA+TGG | 0.446678 | 3_1:-74310181 | Msa0374790:CDS |
| ATATGGAGTATCCGAGTAGA+TGG | 0.447516 | 3_1:-74310164 | Msa0374790:CDS |
| GAAACACACCAATCATGTTC+AGG | 0.450292 | 3_1:-74311608 | Msa0374790:intron |
| GCTAGCTTGTTACTAGGATC+AGG | 0.454907 | 3_1:-74314749 | Msa0374790:CDS |
| TGTTCAGGTTAGCAAAGAAA+TGG | 0.458006 | 3_1:-74311515 | Msa0374790:intron |
| TGTGACTGAATATAGATAGA+TGG | 0.459072 | 3_1:-74314837 | Msa0374790:exon |
| GTTCTCTTTCTTGTTCCTCA+AGG | 0.461180 | 3_1:+74309574 | None:intergenic |
| GACTGCTAGTACCGTGAGCC+TGG | 0.461768 | 3_1:-74310954 | Msa0374790:intron |
| AGTATGAACTGCACTATAAA+CGG | 0.462524 | 3_1:+74310127 | None:intergenic |
| GGGAAAATTTATGATGGGAT+GGG | 0.465427 | 3_1:+74314901 | None:intergenic |
| ATCCAACTGTGCATGTGCTT+TGG | 0.466487 | 3_1:+74314640 | None:intergenic |
| AACTGCTTCTTCTCCCATTG+AGG | 0.472929 | 3_1:+74311399 | None:intergenic |
| CAACTGTGCATGTGCTTTGG+TGG | 0.474846 | 3_1:+74314643 | None:intergenic |
| TTATCTGTCGTAACAATGGA+TGG | 0.475021 | 3_1:-74310431 | Msa0374790:CDS |
| CGATGATGACCATGATGATC+AGG | 0.475797 | 3_1:-74314600 | Msa0374790:intron |
| TATATTCAGTCACAATTCAC+AGG | 0.485300 | 3_1:+74314846 | None:intergenic |
| GCTTATTCGCTTAAAATGGA+TGG | 0.487975 | 3_1:-74310656 | Msa0374790:CDS |
| GTGGTGAAAGGTCAAGCTTA+TGG | 0.488654 | 3_1:-74310188 | Msa0374790:CDS |
| AGACAAATGCCTATACACTA+TGG | 0.491107 | 3_1:-74310852 | Msa0374790:CDS |
| TATAATGGGAAAATTTATGA+TGG | 0.494327 | 3_1:+74314895 | None:intergenic |
| CTTCGAAATTGTTCTTCGAC+GGG | 0.497536 | 3_1:+74310396 | None:intergenic |
| ACATGATTGGTGTGTTTCAT+GGG | 0.499248 | 3_1:+74311613 | None:intergenic |
| TGAGATTGAATATTGGAAGA+TGG | 0.508510 | 3_1:-74309899 | Msa0374790:CDS |
| TGGGAAAATTTATGATGGGA+TGG | 0.514861 | 3_1:+74314900 | None:intergenic |
| ACTGTGAATTTGAGTACAAA+TGG | 0.515898 | 3_1:+74309476 | None:intergenic |
| TTGTTAGAGCCATAGTGTAT+AGG | 0.517990 | 3_1:+74310843 | None:intergenic |
| GTGAATCCAACTTTCCCTCC+AGG | 0.523019 | 3_1:+74311712 | None:intergenic |
| CCGCGCCATAGCAGAACTCC+AGG | 0.523733 | 3_1:+74310936 | None:intergenic |
| ATCTACAAATGAACATCAGA+AGG | 0.524088 | 3_1:+74309516 | None:intergenic |
| CACCAAAGCACATGCACAGT+TGG | 0.527776 | 3_1:-74314642 | Msa0374790:CDS |
| TAGAAGCAATGTAAGGAAGC+AGG | 0.529844 | 3_1:-74309800 | Msa0374790:intron |
| AAGCTGGCTAGCTTGTTACT+AGG | 0.530994 | 3_1:-74314755 | Msa0374790:CDS |
| GGAAAATTTATGATGGGATG+GGG | 0.531529 | 3_1:+74314902 | None:intergenic |
| GTGCTGGTGATTAGGAACTA+AGG | 0.533834 | 3_1:+74314787 | None:intergenic |
| TCGAAATTGTTCTTCGACGG+GGG | 0.534961 | 3_1:+74310398 | None:intergenic |
| TTGTAGGGAGATTTCCATGC+TGG | 0.536226 | 3_1:-74310492 | Msa0374790:intron |
| GTGATTAGGAACTAAGGTCC+TGG | 0.538397 | 3_1:+74314793 | None:intergenic |
| ATGACATACCTGAACATGAT+TGG | 0.542831 | 3_1:+74311600 | None:intergenic |
| TCTGTACTTGGTTGAATCAT+CGG | 0.543455 | 3_1:+74309930 | None:intergenic |
| ACTTCGAAATTGTTCTTCGA+CGG | 0.545306 | 3_1:+74310395 | None:intergenic |
| TGGAGCTTAGAAGCAATGTA+AGG | 0.546431 | 3_1:-74309807 | Msa0374790:CDS |
| CCTTATTATTGAGAAGGTCC+AGG | 0.551779 | 3_1:-74314811 | Msa0374790:CDS |
| GGGTTGAAAGGAATGGTTGG+TGG | 0.552659 | 3_1:-74309846 | Msa0374790:CDS |
| TGGCATCCTTATTATTGAGA+AGG | 0.553122 | 3_1:-74314817 | Msa0374790:CDS |
| GTGAGCCTGGAGTTCTGCTA+TGG | 0.557948 | 3_1:-74310941 | Msa0374790:CDS |
| TATCTGTCGTAACAATGGAT+GGG | 0.559058 | 3_1:-74310430 | Msa0374790:CDS |
| TTGGTTAGGTGATGGTATTG+TGG | 0.562170 | 3_1:-74310207 | Msa0374790:intron |
| AATCATACCTCGATTAAGAC+TGG | 0.563171 | 3_1:+74310074 | None:intergenic |
| CAGGCTCTTAGTTATAGAGT+AGG | 0.563482 | 3_1:-74309967 | Msa0374790:CDS |
| CCAGCACCTTCAAAGTAAGC+TGG | 0.564260 | 3_1:-74314771 | Msa0374790:CDS |
| TAAGCAGCGCCTACAGCTTG+AGG | 0.572650 | 3_1:+74310674 | None:intergenic |
| TTACGTGATGATGCAACAAA+TGG | 0.572708 | 3_1:+74314671 | None:intergenic |
| CTTCTTCTCCCATTGAGGTG+AGG | 0.577078 | 3_1:+74311404 | None:intergenic |
| GAAAGGTGTGAGAAGAAGAG+TGG | 0.579507 | 3_1:+74314708 | None:intergenic |
| TATCGAGTCCTCGATGAAGA+TGG | 0.584034 | 3_1:-74311640 | Msa0374790:CDS |
| GTTAATGCATGCTATTCAAG+TGG | 0.587425 | 3_1:-74309664 | Msa0374790:CDS |
| GAAAATTTATGATGGGATGG+GGG | 0.587743 | 3_1:+74314903 | None:intergenic |
| CAGAATGTAAAATAAAGTTG+GGG | 0.590056 | 3_1:-74309453 | Msa0374790:three_prime_UTR |
| AATGGGTTGAAAGGAATGGT+TGG | 0.592679 | 3_1:-74309849 | Msa0374790:CDS |
| ATCTATGTCTTACGCAATAG+GGG | 0.597213 | 3_1:+74310797 | None:intergenic |
| TCAGTAAACATGTCCTCAAG+TGG | 0.601869 | 3_1:+74309621 | None:intergenic |
| TTGTCTCGACAGCAAAGACG+TGG | 0.604152 | 3_1:+74314985 | None:intergenic |
| TCATCGAGGACTCGATAGCA+AGG | 0.608678 | 3_1:+74311646 | None:intergenic |
| GTGCATCATTTCCATCTACT+CGG | 0.610489 | 3_1:+74310153 | None:intergenic |
| CCTGGAGTTCTGCTATGGCG+CGG | 0.620040 | 3_1:-74310936 | Msa0374790:CDS |
| CAAACTTTCATCAAACCTTG+AGG | 0.623308 | 3_1:-74309589 | Msa0374790:CDS |
| TTCTACGAGGTACAGAGGCA+AGG | 0.623632 | 3_1:-74311442 | Msa0374790:CDS |
| ATAATGGGAAAATTTATGAT+GGG | 0.623755 | 3_1:+74314896 | None:intergenic |
| TGGCTGAGAAGAAGATCGAA+AGG | 0.629379 | 3_1:+74314691 | None:intergenic |
| GAATGGTTGGTGGAGTGACA+AGG | 0.638989 | 3_1:-74309836 | Msa0374790:CDS |
| GGTGATGGTATTGTGGTGAA+AGG | 0.640292 | 3_1:-74310200 | Msa0374790:CDS |
| ATAGCAGAACTCCAGGCTCA+CGG | 0.640845 | 3_1:+74310943 | None:intergenic |
| TGTGAGGATGTATTCTGAGA+TGG | 0.641743 | 3_1:-74311491 | Msa0374790:CDS |
| ACGAGACTGTGAAGTAATTG+TGG | 0.646505 | 3_1:+74310820 | None:intergenic |
| CTGCAAAATTCATACCAGCA+TGG | 0.646981 | 3_1:+74310478 | None:intergenic |
| ACACAACTTCCTCAAGCTGT+AGG | 0.653871 | 3_1:-74310683 | Msa0374790:CDS |
| TGGGGATGGAGGTACTAGTG+AGG | 0.654726 | 3_1:-74310606 | Msa0374790:intron |
| GTAAACATGTCCTCAAGTGG+AGG | 0.665466 | 3_1:+74309624 | None:intergenic |
| TCTACAAATGAACATCAGAA+GGG | 0.668191 | 3_1:+74309517 | None:intergenic |
| TTCGAAATTGTTCTTCGACG+GGG | 0.672988 | 3_1:+74310397 | None:intergenic |
| GCATATTCTACGAGGTACAG+AGG | 0.676162 | 3_1:-74311447 | Msa0374790:CDS |
| GTGCATGTACCTGATCATCA+TGG | 0.678855 | 3_1:+74314591 | None:intergenic |
| GCAAAGACCAGTCTTAATCG+AGG | 0.679916 | 3_1:-74310081 | Msa0374790:intron |
| TTGAATCATCGGATGTAGAG+TGG | 0.691061 | 3_1:+74309941 | None:intergenic |
| GATCATCATGGTCATCATCG+TGG | 0.692606 | 3_1:+74314603 | None:intergenic |
| ATATTCAGTCACAATTCACA+GGG | 0.693037 | 3_1:+74314847 | None:intergenic |
| AGAATGTAAAATAAAGTTGG+GGG | 0.697292 | 3_1:-74309452 | Msa0374790:three_prime_UTR |
| TTAGCAAAGAAATGGCTGTG+AGG | 0.717152 | 3_1:-74311507 | Msa0374790:CDS |
| AGGTGTGAGAAGAAGAGTGG+TGG | 0.725352 | 3_1:+74314711 | None:intergenic |
| TGGGCTCACCATCTTCATCG+AGG | 0.738323 | 3_1:+74311632 | None:intergenic |
| TATGGACAGCATATTCTACG+AGG | 0.801534 | 3_1:-74311455 | Msa0374790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATAATTAATTTTTTAA+TGG | - | chr3_1:74310456-74310475 | Msa0374790:CDS | 0.0% |
| !! | TTATTTAAATTTATATAAAT+TGG | - | chr3_1:74311393-74311412 | Msa0374790:CDS | 0.0% |
| !!! | ATTTTGCTAATATAAATTTA+GGG | + | chr3_1:74310439-74310458 | None:intergenic | 10.0% |
| !!! | AATTTTGCTAATATAAATTT+AGG | + | chr3_1:74310440-74310459 | None:intergenic | 10.0% |
| !!! | TTATTTTTTTCATTTACAAA+AGG | - | chr3_1:74310634-74310653 | Msa0374790:CDS | 10.0% |
| !!! | TACAGTTTTTAATATTTTTT+TGG | - | chr3_1:74310680-74310699 | Msa0374790:CDS | 10.0% |
| !! | TAGATAATTAAAGATATTAA+CGG | + | chr3_1:74310785-74310804 | None:intergenic | 10.0% |
| !!! | AATTTTATTTATGACTAAAT+GGG | + | chr3_1:74311022-74311041 | None:intergenic | 10.0% |
| !!! | TAATTTTATTTATGACTAAA+TGG | + | chr3_1:74311023-74311042 | None:intergenic | 10.0% |
| !!! | ATTTAAAATTTTAAAACCAT+AGG | - | chr3_1:74311467-74311486 | Msa0374790:CDS | 10.0% |
| !!! | TTTAAAATTTTAAAACCATA+GGG | - | chr3_1:74311468-74311487 | Msa0374790:CDS | 10.0% |
| !!! | TTATTAAAATGTTACTTTTA+TGG | + | chr3_1:74314971-74314990 | None:intergenic | 10.0% |
| !! | CTATAATAAAATGCTATAAT+GGG | + | chr3_1:74309468-74309487 | None:intergenic | 15.0% |
| !!! | AAAACATGATTTTTAGTTTT+TGG | + | chr3_1:74310358-74310377 | None:intergenic | 15.0% |
| !! | TATACATTAGTAAAAAAGTA+TGG | - | chr3_1:74310889-74310908 | Msa0374790:CDS | 15.0% |
| !!! | TTATCTTTTGATTCAATTAA+AGG | - | chr3_1:74311076-74311095 | Msa0374790:intron | 15.0% |
| !!! | TATCTTTTGATTCAATTAAA+GGG | - | chr3_1:74311077-74311096 | Msa0374790:intron | 15.0% |
| !!! | TTCATGTATTTTATTTTAGT+GGG | + | chr3_1:74311304-74311323 | None:intergenic | 15.0% |
| !!! | ATTCATGTATTTTATTTTAG+TGG | + | chr3_1:74311305-74311324 | None:intergenic | 15.0% |
| !!! | CAAATATTAGTATTTTTTTG+AGG | - | chr3_1:74311505-74311524 | Msa0374790:CDS | 15.0% |
| !!! | TTTTGTGATAAAAAAAAGTT+TGG | + | chr3_1:74312168-74312187 | None:intergenic | 15.0% |
| !! | TATATTATTATCATTGTCTA+AGG | + | chr3_1:74312233-74312252 | None:intergenic | 15.0% |
| !! | ACTGTTAAAAATAAAATACT+TGG | - | chr3_1:74312406-74312425 | Msa0374790:intron | 15.0% |
| !!! | ATTAGGTTCTAAAATTATTT+TGG | - | chr3_1:74312469-74312488 | Msa0374790:intron | 15.0% |
| !! | AATATAGCAAAATGAAAAAA+GGG | + | chr3_1:74313080-74313099 | None:intergenic | 15.0% |
| !! | TAATATAGCAAAATGAAAAA+AGG | + | chr3_1:74313081-74313100 | None:intergenic | 15.0% |
| !! | TGAGATAAGAAGAAAAATAA+TGG | - | chr3_1:74309396-74309415 | Msa0374790:three_prime_UTR | 20.0% |
| !!! | ATAATGGGAAAATTTATGAT+GGG | + | chr3_1:74309453-74309472 | None:intergenic | 20.0% |
| !!! | TATAATGGGAAAATTTATGA+TGG | + | chr3_1:74309454-74309473 | None:intergenic | 20.0% |
| !! | CCTATAATAAAATGCTATAA+TGG | + | chr3_1:74309469-74309488 | None:intergenic | 20.0% |
| !!! | CCATTATAGCATTTTATTAT+AGG | - | chr3_1:74309466-74309485 | Msa0374790:three_prime_UTR | 20.0% |
| !! | AATTATAAATTAAAATCGCG+TGG | - | chr3_1:74310171-74310190 | Msa0374790:CDS | 20.0% |
| !! | ATTATAAATTAAAATCGCGT+GGG | - | chr3_1:74310172-74310191 | Msa0374790:CDS | 20.0% |
| !! | ACTAATATGACATGAAAAAA+TGG | - | chr3_1:74310566-74310585 | Msa0374790:intron | 20.0% |
| !! | AAATACAAATATTAGCATGT+AGG | + | chr3_1:74310870-74310889 | None:intergenic | 20.0% |
| !!! | TCATGTATTTTATTTTAGTG+GGG | + | chr3_1:74311303-74311322 | None:intergenic | 20.0% |
| !!! | GTTTTTTTAAATAATCCCTA+TGG | + | chr3_1:74311486-74311505 | None:intergenic | 20.0% |
| !!! | ATATTAGTATTTTTTTGAGG+TGG | - | chr3_1:74311508-74311527 | Msa0374790:CDS | 20.0% |
| !!! | AACTTTTATGTTTTTTTGGA+TGG | + | chr3_1:74311606-74311625 | None:intergenic | 20.0% |
| !! | TTTGATTAGATGAGATTAAT+TGG | + | chr3_1:74311631-74311650 | None:intergenic | 20.0% |
| !!! | TAGTTTTATTTTGTATGTGT+TGG | + | chr3_1:74311925-74311944 | None:intergenic | 20.0% |
| !! | AAATAAAATACTTGGAACAA+AGG | - | chr3_1:74312414-74312433 | Msa0374790:intron | 20.0% |
| !! | ATGAATAATGCAACATTTAT+GGG | + | chr3_1:74312564-74312583 | None:intergenic | 20.0% |
| !! | AATGAATAATGCAACATTTA+TGG | + | chr3_1:74312565-74312584 | None:intergenic | 20.0% |
| !! | TGGATCTATAATAACAAAAT+TGG | - | chr3_1:74313116-74313135 | Msa0374790:intron | 20.0% |
| !! | ATATCATAAGTGTCTTAAAT+TGG | + | chr3_1:74313169-74313188 | None:intergenic | 20.0% |
| !!! | TTGAAATTTCATTAGTTTCA+TGG | - | chr3_1:74313257-74313276 | Msa0374790:intron | 20.0% |
| !! | TATTAGTTAAGAAAATTGCA+GGG | + | chr3_1:74313298-74313317 | None:intergenic | 20.0% |
| !! | TTATTAGTTAAGAAAATTGC+AGG | + | chr3_1:74313299-74313318 | None:intergenic | 20.0% |
| !! | ATATAAGTGTTCAATAAAAC+AGG | + | chr3_1:74313334-74313353 | None:intergenic | 20.0% |
| !! | TTATAACATGTTACAGTATA+TGG | + | chr3_1:74313576-74313595 | None:intergenic | 20.0% |
| !!! | CTGATATTTGAAATATTGTA+GGG | - | chr3_1:74313839-74313858 | Msa0374790:intron | 20.0% |
| !!! | TTCTAGTTTTTCTAATATCT+CGG | + | chr3_1:74314102-74314121 | None:intergenic | 20.0% |
| !! | TGTGAATAGATTCAAAAAAT+GGG | - | chr3_1:74314480-74314499 | Msa0374790:intron | 20.0% |
| !! | TTAGTCCATAATATAAATCT+TGG | - | chr3_1:74314602-74314621 | Msa0374790:CDS | 20.0% |
| !! | TCAGAATGTAAAATAAAGTT+GGG | - | chr3_1:74314892-74314911 | Msa0374790:five_prime_UTR | 20.0% |
| ! | TTAGAACTAAAGAAACTGAA+CGG | + | chr3_1:74309806-74309825 | None:intergenic | 25.0% |
| ! | ATGAAGTGAAATACAAAATG+TGG | - | chr3_1:74309987-74310006 | Msa0374790:intron | 25.0% |
| ! | TTATAAATTAAAATCGCGTG+GGG | - | chr3_1:74310173-74310192 | Msa0374790:CDS | 25.0% |
| ! | AAATTATTACAAGAATCACG+TGG | - | chr3_1:74310216-74310235 | Msa0374790:intron | 25.0% |
| ! | AATTATTACAAGAATCACGT+GGG | - | chr3_1:74310217-74310236 | Msa0374790:intron | 25.0% |
| !! | CATCTTCTAAAAAAACATGA+AGG | + | chr3_1:74310259-74310278 | None:intergenic | 25.0% |
| !!! | ATTGGACAAGTATTTTGAAA+CGG | - | chr3_1:74310946-74310965 | Msa0374790:CDS | 25.0% |
| !! | AGTGATTTTTGCTAAAGATA+TGG | - | chr3_1:74311133-74311152 | Msa0374790:intron | 25.0% |
| !!! | AAGATTTAAGTTGAGGAAAT+TGG | + | chr3_1:74311191-74311210 | None:intergenic | 25.0% |
| !!! | ATGTATTTTATTTTAGTGGG+GGG | + | chr3_1:74311301-74311320 | None:intergenic | 25.0% |
| !!! | CATGTATTTTATTTTAGTGG+GGG | + | chr3_1:74311302-74311321 | None:intergenic | 25.0% |
| !!! | TAGGGGTAGATTTTTTTTTT+TGG | - | chr3_1:74311556-74311575 | Msa0374790:intron | 25.0% |
| !!! | AGGGGTAGATTTTTTTTTTT+GGG | - | chr3_1:74311557-74311576 | Msa0374790:intron | 25.0% |
| !!! | GGTGAACTTTTATGTTTTTT+TGG | + | chr3_1:74311610-74311629 | None:intergenic | 25.0% |
| ! | TTACAAACCATTCATAGAAT+AGG | - | chr3_1:74311664-74311683 | Msa0374790:CDS | 25.0% |
| ! | ATAAAGTTGACTAAGTTGTT+GGG | + | chr3_1:74311789-74311808 | None:intergenic | 25.0% |
| ! | TATAAAGTTGACTAAGTTGT+TGG | + | chr3_1:74311790-74311809 | None:intergenic | 25.0% |
| !!! | ATAATCACCTTTTTTTAGTG+TGG | - | chr3_1:74311850-74311869 | Msa0374790:intron | 25.0% |
| ! | ATCAAATCCACACTAAAAAA+AGG | + | chr3_1:74311860-74311879 | None:intergenic | 25.0% |
| ! | AAAAAAAAGTTTGGATGACT+TGG | + | chr3_1:74312159-74312178 | None:intergenic | 25.0% |
| ! | TTATCACAAAAATAGAGTCT+AGG | - | chr3_1:74312177-74312196 | Msa0374790:intron | 25.0% |
| !! | ATAAATTGGTCTATTATTGG+AGG | + | chr3_1:74312206-74312225 | None:intergenic | 25.0% |
| !! | GTGATAAATTGGTCTATTAT+TGG | + | chr3_1:74312209-74312228 | None:intergenic | 25.0% |
| ! | TTCTTTAGTTAAAACACAAC+TGG | - | chr3_1:74312271-74312290 | Msa0374790:intron | 25.0% |
| !! | TTGATCTCATACACATATTT+TGG | + | chr3_1:74312445-74312464 | None:intergenic | 25.0% |
| ! | CAACATTTATGGGAATAATT+TGG | + | chr3_1:74312554-74312573 | None:intergenic | 25.0% |
| ! | AGGGAGAATTAAATAATGTT+GGG | + | chr3_1:74312589-74312608 | None:intergenic | 25.0% |
| !!! | TTCTTCAACGATATTTTAAG+AGG | + | chr3_1:74312808-74312827 | None:intergenic | 25.0% |
| !! | TAAATTGGTGATTCACATTT+AGG | + | chr3_1:74313154-74313173 | None:intergenic | 25.0% |
| !! | TTTGGAAACACAAATGATTT+TGG | - | chr3_1:74313464-74313483 | Msa0374790:intron | 25.0% |
| !!! | AACACAAATGATTTTGGTAA+AGG | - | chr3_1:74313470-74313489 | Msa0374790:intron | 25.0% |
| ! | CTGAATAAGTTAATGTTGTT+CGG | - | chr3_1:74313627-74313646 | Msa0374790:intron | 25.0% |
| ! | TATATGAACTATCTCTCTTA+AGG | - | chr3_1:74313777-74313796 | Msa0374790:intron | 25.0% |
| ! | TATTTCAAATATCAGCAATG+AGG | + | chr3_1:74313834-74313853 | None:intergenic | 25.0% |
| !! | GCTGATATTTGAAATATTGT+AGG | - | chr3_1:74313838-74313857 | Msa0374790:intron | 25.0% |
| ! | TTACGACAGATAAAAATAAC+AGG | + | chr3_1:74313908-74313927 | None:intergenic | 25.0% |
| !! | ATTTTTATCTGTCGTAACAA+TGG | - | chr3_1:74313911-74313930 | Msa0374790:intron | 25.0% |
| !! | GTTTGAGACTAAAAATAAGT+AGG | + | chr3_1:74313992-74314011 | None:intergenic | 25.0% |
| ! | CATAAACTTGAACATGAATT+AGG | + | chr3_1:74314064-74314083 | None:intergenic | 25.0% |
| ! | AAACTAGAAACTTACATGTT+TGG | - | chr3_1:74314113-74314132 | Msa0374790:intron | 25.0% |
| ! | CAATATTCAATCTCATCAAT+TGG | + | chr3_1:74314442-74314461 | None:intergenic | 25.0% |
| ! | CAATTGATGAGATTGAATAT+TGG | - | chr3_1:74314440-74314459 | Msa0374790:intron | 25.0% |
| !!! | CATTTTTTGAATCTATTCAC+AGG | + | chr3_1:74314481-74314500 | None:intergenic | 25.0% |
| ! | CTGTGAATAGATTCAAAAAA+TGG | - | chr3_1:74314479-74314498 | Msa0374790:intron | 25.0% |
| ! | GCATACCAAGATTTATATTA+TGG | + | chr3_1:74314610-74314629 | None:intergenic | 25.0% |
| ! | AAAATGTCAAAACTCAAAAC+AGG | + | chr3_1:74314642-74314661 | None:intergenic | 25.0% |
| ! | GTACAAATGGTTATTTGAAT+TGG | + | chr3_1:74314860-74314879 | None:intergenic | 25.0% |
| ! | GTCAGAATGTAAAATAAAGT+TGG | - | chr3_1:74314891-74314910 | Msa0374790:five_prime_UTR | 25.0% |
| ! | CAGAATGTAAAATAAAGTTG+GGG | - | chr3_1:74314893-74314912 | Msa0374790:five_prime_UTR | 25.0% |
| ! | AGAATGTAAAATAAAGTTGG+GGG | - | chr3_1:74314894-74314913 | Msa0374790:five_prime_UTR | 25.0% |
| ATATTCAGTCACAATTCACA+GGG | + | chr3_1:74309502-74309521 | None:intergenic | 30.0% | |
| TATATTCAGTCACAATTCAC+AGG | + | chr3_1:74309503-74309522 | None:intergenic | 30.0% | |
| TGTGACTGAATATAGATAGA+TGG | - | chr3_1:74309509-74309528 | Msa0374790:exon | 30.0% | |
| !! | TTTAGTTCTAATCAGCCTAT+AGG | - | chr3_1:74309815-74309834 | Msa0374790:CDS | 30.0% |
| !! | TTAGTTCTAATCAGCCTATA+GGG | - | chr3_1:74309816-74309835 | Msa0374790:CDS | 30.0% |
| TCTCATCAATAGAATTCAGA+TGG | + | chr3_1:74309890-74309909 | None:intergenic | 30.0% | |
| GAATAAGATGAGATAAGTTC+AGG | + | chr3_1:74309916-74309935 | None:intergenic | 30.0% | |
| ATCAATTAGAGAAAACACGT+GGG | + | chr3_1:74310133-74310152 | None:intergenic | 30.0% | |
| AATCAATTAGAGAAAACACG+TGG | + | chr3_1:74310134-74310153 | None:intergenic | 30.0% | |
| ATTATTACAAGAATCACGTG+GGG | - | chr3_1:74310218-74310237 | Msa0374790:intron | 30.0% | |
| !!! | CGATGACATTTTTAGTAGAA+AGG | - | chr3_1:74310543-74310562 | Msa0374790:intron | 30.0% |
| !! | CTTGGACATGTATTTTGAAA+CGG | + | chr3_1:74310727-74310746 | None:intergenic | 30.0% |
| ATAGTGCACATTGCAAAAAT+TGG | - | chr3_1:74310928-74310947 | Msa0374790:CDS | 30.0% | |
| ATGGGATATTTAGTGATTGT+AGG | + | chr3_1:74311004-74311023 | None:intergenic | 30.0% | |
| TGCTCTAATCCATATAATGA+TGG | - | chr3_1:74311160-74311179 | Msa0374790:intron | 30.0% | |
| GCTCTAATCCATATAATGAT+GGG | - | chr3_1:74311161-74311180 | Msa0374790:intron | 30.0% | |
| !! | TGTACCGTTAGTAATTTGTT+AGG | - | chr3_1:74311537-74311556 | Msa0374790:intron | 30.0% |
| !! | GTACCGTTAGTAATTTGTTA+GGG | - | chr3_1:74311538-74311557 | Msa0374790:intron | 30.0% |
| !! | TACCGTTAGTAATTTGTTAG+GGG | - | chr3_1:74311539-74311558 | Msa0374790:intron | 30.0% |
| TACCCCTAACAAATTACTAA+CGG | + | chr3_1:74311544-74311563 | None:intergenic | 30.0% | |
| !!! | TTTTTGGGACTTAGTATAAG+TGG | - | chr3_1:74311572-74311591 | Msa0374790:intron | 30.0% |
| TTAATAGTATCTCTTGGTAG+TGG | + | chr3_1:74311719-74311738 | None:intergenic | 30.0% | |
| ACTACCAAGAGATACTATTA+AGG | - | chr3_1:74311718-74311737 | Msa0374790:CDS | 30.0% | |
| CAATCCTTAATAGTATCTCT+TGG | + | chr3_1:74311725-74311744 | None:intergenic | 30.0% | |
| TAAGTTGTTGGGGAATAAAA+AGG | + | chr3_1:74311778-74311797 | None:intergenic | 30.0% | |
| TAAAGTTGACTAAGTTGTTG+GGG | + | chr3_1:74311788-74311807 | None:intergenic | 30.0% | |
| AACAAAATCGCTGTAGTTAT+GGG | + | chr3_1:74311815-74311834 | None:intergenic | 30.0% | |
| TAACAAAATCGCTGTAGTTA+TGG | + | chr3_1:74311816-74311835 | None:intergenic | 30.0% | |
| TTGTCTAAGGAGTGATAAAT+TGG | + | chr3_1:74312220-74312239 | None:intergenic | 30.0% | |
| TGTATGAGATCAACAGAATT+AGG | - | chr3_1:74312452-74312471 | Msa0374790:intron | 30.0% | |
| TGAAATCCCTAAAATAAAGC+AGG | - | chr3_1:74312495-74312514 | Msa0374790:intron | 30.0% | |
| GAAATCCCTAAAATAAAGCA+GGG | - | chr3_1:74312496-74312515 | Msa0374790:intron | 30.0% | |
| GGGAGAATTAAATAATGTTG+GGG | + | chr3_1:74312588-74312607 | None:intergenic | 30.0% | |
| GAGGGAGAATTAAATAATGT+TGG | + | chr3_1:74312590-74312609 | None:intergenic | 30.0% | |
| TTATTTAATTCTCCCTCTCA+CGG | - | chr3_1:74312593-74312612 | Msa0374790:intron | 30.0% | |
| ATCATATCGTACTATGTAGT+CGG | - | chr3_1:74312781-74312800 | Msa0374790:intron | 30.0% | |
| ATCGTTGAAGAAATATGTTC+AGG | - | chr3_1:74312816-74312835 | Msa0374790:intron | 30.0% | |
| ! | GAATTTGAAAAGAAGCATGA+GGG | + | chr3_1:74313053-74313072 | None:intergenic | 30.0% |
| ! | TGAATTTGAAAAGAAGCATG+AGG | + | chr3_1:74313054-74313073 | None:intergenic | 30.0% |
| TATTACACTATCTGCTATTG+TGG | - | chr3_1:74313096-74313115 | Msa0374790:intron | 30.0% | |
| TATCTATGTCTTACGCAATA+GGG | + | chr3_1:74313553-74313572 | None:intergenic | 30.0% | |
| ! | TATGAATTTTGCAGCAGTAA+TGG | - | chr3_1:74313877-74313896 | Msa0374790:intron | 30.0% |
| CGCATAAGCCTTTAATTAAA+GGG | - | chr3_1:74314038-74314057 | Msa0374790:intron | 30.0% | |
| GAATTAGGCCCTTTAATTAA+AGG | + | chr3_1:74314049-74314068 | None:intergenic | 30.0% | |
| !! | AAACTTACATGTTTGGTGTT+TGG | - | chr3_1:74314120-74314139 | Msa0374790:intron | 30.0% |
| AGTATGAACTGCACTATAAA+CGG | + | chr3_1:74314222-74314241 | None:intergenic | 30.0% | |
| ! | TCTTAGCTTGACGTAAAATT+AGG | + | chr3_1:74314308-74314327 | None:intergenic | 30.0% |
| ! | ATTTTCACTAACTGATCTCA+TGG | - | chr3_1:74314345-74314364 | Msa0374790:intron | 30.0% |
| TGAGATTGAATATTGGAAGA+TGG | - | chr3_1:74314447-74314466 | Msa0374790:intron | 30.0% | |
| !! | GATTCAAAAAATGGGTTGAA+AGG | - | chr3_1:74314488-74314507 | Msa0374790:intron | 30.0% |
| !! | AAAAAATGGGTTGAAAGGAA+TGG | - | chr3_1:74314493-74314512 | Msa0374790:intron | 30.0% |
| TCTACAAATGAACATCAGAA+GGG | + | chr3_1:74314832-74314851 | None:intergenic | 30.0% | |
| ATCTACAAATGAACATCAGA+AGG | + | chr3_1:74314833-74314852 | None:intergenic | 30.0% | |
| ACTGTGAATTTGAGTACAAA+TGG | + | chr3_1:74314873-74314892 | None:intergenic | 30.0% | |
| ! | GAAAATTTATGATGGGATGG+GGG | + | chr3_1:74309446-74309465 | None:intergenic | 35.0% |
| ! | GGAAAATTTATGATGGGATG+GGG | + | chr3_1:74309447-74309466 | None:intergenic | 35.0% |
| ! | GGGAAAATTTATGATGGGAT+GGG | + | chr3_1:74309448-74309467 | None:intergenic | 35.0% |
| ! | TGGGAAAATTTATGATGGGA+TGG | + | chr3_1:74309449-74309468 | None:intergenic | 35.0% |
| TGGCATCCTTATTATTGAGA+AGG | - | chr3_1:74309529-74309548 | Msa0374790:CDS | 35.0% | |
| ! | TTACGTGATGATGCAACAAA+TGG | + | chr3_1:74309678-74309697 | None:intergenic | 35.0% |
| ! | ACTTCATCTTTTCTTGCTAG+TGG | + | chr3_1:74309974-74309993 | None:intergenic | 35.0% |
| GTGAAATACAAAATGTGGAG+TGG | - | chr3_1:74309992-74310011 | Msa0374790:intron | 35.0% | |
| TGTGGAGTGGAGTAAAAATT+AGG | - | chr3_1:74310005-74310024 | Msa0374790:intron | 35.0% | |
| GTGGAGTGGAGTAAAAATTA+GGG | - | chr3_1:74310006-74310025 | Msa0374790:intron | 35.0% | |
| !!! | GACATGTATTTTGAAACGGA+GGG | + | chr3_1:74310723-74310742 | None:intergenic | 35.0% |
| TAACGGTCAAAATTGTGCAT+TGG | + | chr3_1:74310768-74310787 | None:intergenic | 35.0% | |
| !!! | GACAAGTATTTTGAAACGGA+GGG | - | chr3_1:74310950-74310969 | Msa0374790:intron | 35.0% |
| TTGGAATGCCCATCATTATA+TGG | + | chr3_1:74311172-74311191 | None:intergenic | 35.0% | |
| !! | TCGTTCGAAGATTTAAGTTG+AGG | + | chr3_1:74311198-74311217 | None:intergenic | 35.0% |
| AACCATTCATAGAATAGGCA+CGG | - | chr3_1:74311669-74311688 | Msa0374790:CDS | 35.0% | |
| CTTGTGGAAAAACAATCTTG+TGG | + | chr3_1:74311696-74311715 | None:intergenic | 35.0% | |
| ACAAAATCGCTGTAGTTATG+GGG | + | chr3_1:74311814-74311833 | None:intergenic | 35.0% | |
| ! | ATTTTGTATGTGTTGGACAG+TGG | + | chr3_1:74311918-74311937 | None:intergenic | 35.0% |
| TTGGTCTGACCATAAAGATT+AGG | - | chr3_1:74312125-74312144 | Msa0374790:intron | 35.0% | |
| TGGTCTGACCATAAAGATTA+GGG | - | chr3_1:74312126-74312145 | Msa0374790:intron | 35.0% | |
| GATTCCATCCCTAATCTTTA+TGG | + | chr3_1:74312137-74312156 | None:intergenic | 35.0% | |
| ACATGATTGGTGTGTTTCAT+GGG | + | chr3_1:74312736-74312755 | None:intergenic | 35.0% | |
| AACATGATTGGTGTGTTTCA+TGG | + | chr3_1:74312737-74312756 | None:intergenic | 35.0% | |
| ATGACATACCTGAACATGAT+TGG | + | chr3_1:74312749-74312768 | None:intergenic | 35.0% | |
| ! | TGTTCAGGTTAGCAAAGAAA+TGG | - | chr3_1:74312831-74312850 | Msa0374790:intron | 35.0% |
| TGATGATATTATCTTGCCTC+AGG | - | chr3_1:74312999-74313018 | Msa0374790:intron | 35.0% | |
| ! | ATTAGTTTCATGGACCAAGT+TGG | - | chr3_1:74313267-74313286 | Msa0374790:intron | 35.0% |
| TAGTTAAGAAAATTGCAGGG+TGG | + | chr3_1:74313295-74313314 | None:intergenic | 35.0% | |
| ! | CAATTTGCTCATCAATGCTT+TGG | - | chr3_1:74313446-74313465 | Msa0374790:intron | 35.0% |
| AGACAAATGCCTATACACTA+TGG | - | chr3_1:74313494-74313513 | Msa0374790:intron | 35.0% | |
| TTGTTAGAGCCATAGTGTAT+AGG | + | chr3_1:74313506-74313525 | None:intergenic | 35.0% | |
| ATCTATGTCTTACGCAATAG+GGG | + | chr3_1:74313552-74313571 | None:intergenic | 35.0% | |
| GTATCTATGTCTTACGCAAT+AGG | + | chr3_1:74313554-74313573 | None:intergenic | 35.0% | |
| GCTTATTCGCTTAAAATGGA+TGG | - | chr3_1:74313690-74313709 | Msa0374790:intron | 35.0% | |
| ! | CTTGTGCAGTAACATTTTGT+GGG | - | chr3_1:74313721-74313740 | Msa0374790:intron | 35.0% |
| ! | TTGTGCAGTAACATTTTGTG+GGG | - | chr3_1:74313722-74313741 | Msa0374790:intron | 35.0% |
| TTATCTGTCGTAACAATGGA+TGG | - | chr3_1:74313915-74313934 | Msa0374790:intron | 35.0% | |
| TATCTGTCGTAACAATGGAT+GGG | - | chr3_1:74313916-74313935 | Msa0374790:intron | 35.0% | |
| ACTTCGAAATTGTTCTTCGA+CGG | + | chr3_1:74313954-74313973 | None:intergenic | 35.0% | |
| GCGCATAAGCCTTTAATTAA+AGG | - | chr3_1:74314037-74314056 | Msa0374790:intron | 35.0% | |
| !! | TACATGTTTGGTGTTTGGTT+AGG | - | chr3_1:74314125-74314144 | Msa0374790:intron | 35.0% |
| AAGGTCAAGCTTATGGAATA+TGG | - | chr3_1:74314165-74314184 | Msa0374790:intron | 35.0% | |
| AATCATACCTCGATTAAGAC+TGG | + | chr3_1:74314275-74314294 | None:intergenic | 35.0% | |
| TCTGTACTTGGTTGAATCAT+CGG | + | chr3_1:74314419-74314438 | None:intergenic | 35.0% | |
| TGTCAAAACTCAAAACAGGT+TGG | + | chr3_1:74314638-74314657 | None:intergenic | 35.0% | |
| GTTAATGCATGCTATTCAAG+TGG | - | chr3_1:74314682-74314701 | Msa0374790:CDS | 35.0% | |
| CAAACTTTCATCAAACCTTG+AGG | - | chr3_1:74314757-74314776 | Msa0374790:CDS | 35.0% | |
| ACATCAGAAGGGTAATCTTT+GGG | + | chr3_1:74314821-74314840 | None:intergenic | 35.0% | |
| AACATCAGAAGGGTAATCTT+TGG | + | chr3_1:74314822-74314841 | None:intergenic | 35.0% | |
| CCTGGACCTTCTCAATAATA+AGG | + | chr3_1:74309538-74309557 | None:intergenic | 40.0% | |
| CCTTATTATTGAGAAGGTCC+AGG | - | chr3_1:74309535-74309554 | Msa0374790:CDS | 40.0% | |
| TGCAATTCTTCACTCCCTAT+AGG | + | chr3_1:74309833-74309852 | None:intergenic | 40.0% | |
| !! | GTCATCGATGTTTTGTTCAG+AGG | + | chr3_1:74310530-74310549 | None:intergenic | 40.0% |
| !!! | GGACATGTATTTTGAAACGG+AGG | + | chr3_1:74310724-74310743 | None:intergenic | 40.0% |
| CATATGTGAAGTGGTTGACT+TGG | + | chr3_1:74310745-74310764 | None:intergenic | 40.0% | |
| !!! | GGACAAGTATTTTGAAACGG+AGG | - | chr3_1:74310949-74310968 | Msa0374790:intron | 40.0% |
| TCCAATTCAAGACGTGAACA+AGG | - | chr3_1:74311051-74311070 | Msa0374790:intron | 40.0% | |
| ACCTTGTTCACGTCTTGAAT+TGG | + | chr3_1:74311055-74311074 | None:intergenic | 40.0% | |
| TCCTTTCTTTCACAAAGTCG+AGG | - | chr3_1:74312021-74312040 | Msa0374790:intron | 40.0% | |
| ! | GAAGGTTGGTTCAACTAGTT+AGG | - | chr3_1:74312056-74312075 | Msa0374790:intron | 40.0% |
| ATGTGTATTCAACTCCCTTG+AGG | - | chr3_1:74312101-74312120 | Msa0374790:intron | 40.0% | |
| TATTCAACTCCCTTGAGGTT+TGG | - | chr3_1:74312106-74312125 | Msa0374790:intron | 40.0% | |
| CTGACCATAAAGATTAGGGA+TGG | - | chr3_1:74312130-74312149 | Msa0374790:intron | 40.0% | |
| ATCCCTAAAATAAAGCAGGG+TGG | - | chr3_1:74312499-74312518 | Msa0374790:intron | 40.0% | |
| !!! | AGCCACCCTGCTTTATTTTA+GGG | + | chr3_1:74312504-74312523 | None:intergenic | 40.0% |
| !!! | AAGCCACCCTGCTTTATTTT+AGG | + | chr3_1:74312505-74312524 | None:intergenic | 40.0% |
| !!! | CTTCAGTTCATCGATTTTCC+TGG | - | chr3_1:74312616-74312635 | Msa0374790:intron | 40.0% |
| !!! | AGTTCATCGATTTTCCTGGA+GGG | - | chr3_1:74312620-74312639 | Msa0374790:intron | 40.0% |
| GAAACACACCAATCATGTTC+AGG | - | chr3_1:74312738-74312757 | Msa0374790:intron | 40.0% | |
| TTAGCAAAGAAATGGCTGTG+AGG | - | chr3_1:74312839-74312858 | Msa0374790:intron | 40.0% | |
| ! | TGTGAGGATGTATTCTGAGA+TGG | - | chr3_1:74312855-74312874 | Msa0374790:intron | 40.0% |
| GATGGTCACTCTTCAAACTA+TGG | - | chr3_1:74312873-74312892 | Msa0374790:intron | 40.0% | |
| TATGGACAGCATATTCTACG+AGG | - | chr3_1:74312891-74312910 | Msa0374790:intron | 40.0% | |
| ACGAGACTGTGAAGTAATTG+TGG | + | chr3_1:74313529-74313548 | None:intergenic | 40.0% | |
| CGCTGCTTATTCGCTTAAAA+TGG | - | chr3_1:74313686-74313705 | Msa0374790:intron | 40.0% | |
| ! | GCTTGTGCAGTAACATTTTG+TGG | - | chr3_1:74313720-74313739 | Msa0374790:intron | 40.0% |
| CTGCAAAATTCATACCAGCA+TGG | + | chr3_1:74313871-74313890 | None:intergenic | 40.0% | |
| ! | GAATTTTGCAGCAGTAATGG+AGG | - | chr3_1:74313880-74313899 | Msa0374790:intron | 40.0% |
| TTCGAAATTGTTCTTCGACG+GGG | + | chr3_1:74313952-74313971 | None:intergenic | 40.0% | |
| CTTCGAAATTGTTCTTCGAC+GGG | + | chr3_1:74313953-74313972 | None:intergenic | 40.0% | |
| !! | TTTGGTGTTTGGTTAGGTGA+TGG | - | chr3_1:74314131-74314150 | Msa0374790:intron | 40.0% |
| ! | TTGGTTAGGTGATGGTATTG+TGG | - | chr3_1:74314139-74314158 | Msa0374790:intron | 40.0% |
| ! | ATATGGAGTATCCGAGTAGA+TGG | - | chr3_1:74314182-74314201 | Msa0374790:intron | 40.0% |
| GTGCATCATTTCCATCTACT+CGG | + | chr3_1:74314196-74314215 | None:intergenic | 40.0% | |
| TCTCATGGTGAATGATGTTC+AGG | - | chr3_1:74314360-74314379 | Msa0374790:intron | 40.0% | |
| CAGGCTCTTAGTTATAGAGT+AGG | - | chr3_1:74314379-74314398 | Msa0374790:intron | 40.0% | |
| TTGAATCATCGGATGTAGAG+TGG | + | chr3_1:74314408-74314427 | None:intergenic | 40.0% | |
| ! | CTCATCAATTGGTCTGTACT+TGG | + | chr3_1:74314431-74314450 | None:intergenic | 40.0% |
| !! | AATGGGTTGAAAGGAATGGT+TGG | - | chr3_1:74314497-74314516 | Msa0374790:intron | 40.0% |
| TGGAGCTTAGAAGCAATGTA+AGG | - | chr3_1:74314539-74314558 | Msa0374790:intron | 40.0% | |
| TAGAAGCAATGTAAGGAAGC+AGG | - | chr3_1:74314546-74314565 | Msa0374790:intron | 40.0% | |
| TCAGTAAACATGTCCTCAAG+TGG | + | chr3_1:74314728-74314747 | None:intergenic | 40.0% | |
| GTTCTCTTTCTTGTTCCTCA+AGG | + | chr3_1:74314775-74314794 | None:intergenic | 40.0% | |
| ! | TTATGATGGGATGGGGGAAA+AGG | + | chr3_1:74309440-74309459 | None:intergenic | 45.0% |
| GTGATTAGGAACTAAGGTCC+TGG | + | chr3_1:74309556-74309575 | None:intergenic | 45.0% | |
| ! | GTGCTGGTGATTAGGAACTA+AGG | + | chr3_1:74309562-74309581 | None:intergenic | 45.0% |
| !! | CTTTGAAGGTGCTGGTGATT+AGG | + | chr3_1:74309570-74309589 | None:intergenic | 45.0% |
| AGCTAGCCAGCTTACTTTGA+AGG | + | chr3_1:74309584-74309603 | None:intergenic | 45.0% | |
| !! | AAGCTGGCTAGCTTGTTACT+AGG | - | chr3_1:74309591-74309610 | Msa0374790:CDS | 45.0% |
| !! | GCTAGCTTGTTACTAGGATC+AGG | - | chr3_1:74309597-74309616 | Msa0374790:CDS | 45.0% |
| ! | GAAAGGTGTGAGAAGAAGAG+TGG | + | chr3_1:74309641-74309660 | None:intergenic | 45.0% |
| TGGCTGAGAAGAAGATCGAA+AGG | + | chr3_1:74309658-74309677 | None:intergenic | 45.0% | |
| ATCCAACTGTGCATGTGCTT+TGG | + | chr3_1:74309709-74309728 | None:intergenic | 45.0% | |
| GATCATCATGGTCATCATCG+TGG | + | chr3_1:74309746-74309765 | None:intergenic | 45.0% | |
| CGATGATGACCATGATGATC+AGG | - | chr3_1:74309746-74309765 | Msa0374790:intron | 45.0% | |
| GTGCATGTACCTGATCATCA+TGG | + | chr3_1:74309758-74309777 | None:intergenic | 45.0% | |
| TATCTCATCTTATTCGCCGC+TGG | - | chr3_1:74309921-74309940 | Msa0374790:CDS | 45.0% | |
| ! | GTGCATTGGCATATGTGAAG+TGG | + | chr3_1:74310754-74310773 | None:intergenic | 45.0% |
| ! | AAGGGTCGTAGCGTTCTTTT+TGG | - | chr3_1:74311095-74311114 | Msa0374790:intron | 45.0% |
| GTCCGTGCCTATTCTATGAA+TGG | + | chr3_1:74311674-74311693 | None:intergenic | 45.0% | |
| !! | TATCTCTTGGTAGTGGCTTG+TGG | + | chr3_1:74311712-74311731 | None:intergenic | 45.0% |
| GCCTCGACTTTGTGAAAGAA+AGG | + | chr3_1:74312025-74312044 | None:intergenic | 45.0% | |
| ATGGTCAGACCAAACCTCAA+GGG | + | chr3_1:74312118-74312137 | None:intergenic | 45.0% | |
| TATGGTCAGACCAAACCTCA+AGG | + | chr3_1:74312119-74312138 | None:intergenic | 45.0% | |
| !!! | CAGTTCATCGATTTTCCTGG+AGG | - | chr3_1:74312619-74312638 | Msa0374790:intron | 45.0% |
| ! | GATTTTCCTGGAGGGAAAGT+TGG | - | chr3_1:74312628-74312647 | Msa0374790:intron | 45.0% |
| TATCGAGTCCTCGATGAAGA+TGG | - | chr3_1:74312706-74312725 | Msa0374790:intron | 45.0% | |
| GCATATTCTACGAGGTACAG+AGG | - | chr3_1:74312899-74312918 | Msa0374790:intron | 45.0% | |
| TTCCTTCTACCTCACCTCAA+TGG | - | chr3_1:74312933-74312952 | Msa0374790:intron | 45.0% | |
| TCCTTCTACCTCACCTCAAT+GGG | - | chr3_1:74312934-74312953 | Msa0374790:intron | 45.0% | |
| AACTGCTTCTTCTCCCATTG+AGG | + | chr3_1:74312950-74312969 | None:intergenic | 45.0% | |
| GAGGGAATTTCAATGCCTTG+CGG | + | chr3_1:74313035-74313054 | None:intergenic | 45.0% | |
| ACACAACTTCCTCAAGCTGT+AGG | - | chr3_1:74313663-74313682 | Msa0374790:intron | 45.0% | |
| ! | GCAGTAACATTTTGTGGGGA+TGG | - | chr3_1:74313726-74313745 | Msa0374790:intron | 45.0% |
| ! | GTAACATTTTGTGGGGATGG+AGG | - | chr3_1:74313729-74313748 | Msa0374790:intron | 45.0% |
| TTGTAGGGAGATTTCCATGC+TGG | - | chr3_1:74313854-74313873 | Msa0374790:intron | 45.0% | |
| TCGAAATTGTTCTTCGACGG+GGG | + | chr3_1:74313951-74313970 | None:intergenic | 45.0% | |
| ! | GGTGATGGTATTGTGGTGAA+AGG | - | chr3_1:74314146-74314165 | Msa0374790:intron | 45.0% |
| GTGGTGAAAGGTCAAGCTTA+TGG | - | chr3_1:74314158-74314177 | Msa0374790:intron | 45.0% | |
| GCAAAGACCAGTCTTAATCG+AGG | - | chr3_1:74314265-74314284 | Msa0374790:intron | 45.0% | |
| GTGGAGTGACAAGGATGAAT+TGG | - | chr3_1:74314519-74314538 | Msa0374790:intron | 45.0% | |
| AGCACAAAAACCTCCACTTG+AGG | - | chr3_1:74314712-74314731 | Msa0374790:CDS | 45.0% | |
| GTAAACATGTCCTCAAGTGG+AGG | + | chr3_1:74314725-74314744 | None:intergenic | 45.0% | |
| TTGTCTCGACAGCAAAGACG+TGG | + | chr3_1:74309364-74309383 | None:intergenic | 50.0% | |
| ! | CCAGCTTACTTTGAAGGTGC+TGG | + | chr3_1:74309578-74309597 | None:intergenic | 50.0% |
| CCAGCACCTTCAAAGTAAGC+TGG | - | chr3_1:74309575-74309594 | Msa0374790:CDS | 50.0% | |
| AGGTGTGAGAAGAAGAGTGG+TGG | + | chr3_1:74309638-74309657 | None:intergenic | 50.0% | |
| CAACTGTGCATGTGCTTTGG+TGG | + | chr3_1:74309706-74309725 | None:intergenic | 50.0% | |
| CACCAAAGCACATGCACAGT+TGG | - | chr3_1:74309704-74309723 | Msa0374790:intron | 50.0% | |
| TCTTGCTAGTGGCTAGAGAC+CGG | + | chr3_1:74309963-74309982 | None:intergenic | 50.0% | |
| TCACAAAGTCGAGGCAACCT+CGG | - | chr3_1:74312030-74312049 | Msa0374790:intron | 50.0% | |
| TTGAACCAACCTTCATGCCG+AGG | + | chr3_1:74312050-74312069 | None:intergenic | 50.0% | |
| GATGAACTGAAGCCGTGAGA+GGG | + | chr3_1:74312608-74312627 | None:intergenic | 50.0% | |
| GTGAATCCAACTTTCCCTCC+AGG | + | chr3_1:74312637-74312656 | None:intergenic | 50.0% | |
| TCATCGAGGACTCGATAGCA+AGG | + | chr3_1:74312703-74312722 | None:intergenic | 50.0% | |
| TTCTACGAGGTACAGAGGCA+AGG | - | chr3_1:74312904-74312923 | Msa0374790:intron | 50.0% | |
| TCCCATTGAGGTGAGGTAGA+AGG | + | chr3_1:74312938-74312957 | None:intergenic | 50.0% | |
| CTTCTTCTCCCATTGAGGTG+AGG | + | chr3_1:74312945-74312964 | None:intergenic | 50.0% | |
| ATAGCAGAACTCCAGGCTCA+CGG | + | chr3_1:74313406-74313425 | None:intergenic | 50.0% | |
| GGGTTGAAAGGAATGGTTGG+TGG | - | chr3_1:74314500-74314519 | Msa0374790:intron | 50.0% | |
| !! | GAATGGTTGGTGGAGTGACA+AGG | - | chr3_1:74314510-74314529 | Msa0374790:intron | 50.0% |
| !! | TTCGCCGCTGGTTTGAACCT+CGG | - | chr3_1:74309933-74309952 | Msa0374790:CDS | 55.0% |
| GTGTCCGAGGTTCAAACCAG+CGG | + | chr3_1:74309940-74309959 | None:intergenic | 55.0% | |
| TGGTTTGAACCTCGGACACC+CGG | - | chr3_1:74309941-74309960 | Msa0374790:CDS | 55.0% | |
| CTTGCTAGTGGCTAGAGACC+GGG | + | chr3_1:74309962-74309981 | None:intergenic | 55.0% | |
| CGATGAACTGAAGCCGTGAG+AGG | + | chr3_1:74312609-74312628 | None:intergenic | 55.0% | |
| TGGGCTCACCATCTTCATCG+AGG | + | chr3_1:74312717-74312736 | None:intergenic | 55.0% | |
| TTGCGGCAGAAGCAAACCTG+AGG | + | chr3_1:74313018-74313037 | None:intergenic | 55.0% | |
| ! | TCAGGTTTGCTTCTGCCGCA+AGG | - | chr3_1:74313017-74313036 | Msa0374790:intron | 55.0% |
| ! | ATTGCAGGGTGGTGCCAACT+TGG | + | chr3_1:74313284-74313303 | None:intergenic | 55.0% |
| GTGAGCCTGGAGTTCTGCTA+TGG | - | chr3_1:74313405-74313424 | Msa0374790:intron | 55.0% | |
| TAAGCAGCGCCTACAGCTTG+AGG | + | chr3_1:74313675-74313694 | None:intergenic | 55.0% | |
| !! | TGGGGATGGAGGTACTAGTG+AGG | - | chr3_1:74313740-74313759 | Msa0374790:intron | 55.0% |
| TCGAGGCAACCTCGGCATGA+AGG | - | chr3_1:74312038-74312057 | Msa0374790:intron | 60.0% | |
| GGCAACCTCGGCATGAAGGT+TGG | - | chr3_1:74312042-74312061 | Msa0374790:intron | 60.0% | |
| GACTGCTAGTACCGTGAGCC+TGG | - | chr3_1:74313392-74313411 | Msa0374790:intron | 60.0% | |
| CCTGGAGTTCTGCTATGGCG+CGG | - | chr3_1:74313410-74313429 | Msa0374790:intron | 60.0% | |
| CCGCGCCATAGCAGAACTCC+AGG | + | chr3_1:74313413-74313432 | None:intergenic | 65.0% | |
| GGCTAGAGACCGGGTGTCCG+AGG | + | chr3_1:74309953-74309972 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 74309343 | 74315025 | 74309343 | ID=Msa0374790;Name=Msa0374790 |
| chr3_1 | mRNA | 74309343 | 74315025 | 74309343 | ID=Msa0374790-mRNA-1;Parent=Msa0374790;Name=Msa0374790-mRNA-1;_AED=0.12;_eAED=0.12;_QI=185|1|1|1|1|1|9|175|474 |
| chr3_1 | exon | 74309343 | 74309685 | 74309343 | ID=Msa0374790-mRNA-1:exon:17209;Parent=Msa0374790-mRNA-1 |
| chr3_1 | exon | 74309801 | 74309986 | 74309801 | ID=Msa0374790-mRNA-1:exon:17208;Parent=Msa0374790-mRNA-1 |
| chr3_1 | exon | 74310082 | 74310221 | 74310082 | ID=Msa0374790-mRNA-1:exon:17207;Parent=Msa0374790-mRNA-1 |
| chr3_1 | exon | 74310397 | 74310508 | 74310397 | ID=Msa0374790-mRNA-1:exon:17206;Parent=Msa0374790-mRNA-1 |
| chr3_1 | exon | 74310607 | 74310706 | 74310607 | ID=Msa0374790-mRNA-1:exon:17205;Parent=Msa0374790-mRNA-1 |
| chr3_1 | exon | 74310810 | 74310967 | 74310810 | ID=Msa0374790-mRNA-1:exon:17204;Parent=Msa0374790-mRNA-1 |
| chr3_1 | exon | 74311348 | 74311530 | 74311348 | ID=Msa0374790-mRNA-1:exon:17203;Parent=Msa0374790-mRNA-1 |
| chr3_1 | exon | 74311609 | 74311746 | 74311609 | ID=Msa0374790-mRNA-1:exon:17202;Parent=Msa0374790-mRNA-1 |
| chr3_1 | exon | 74314601 | 74315025 | 74314601 | ID=Msa0374790-mRNA-1:exon:17201;Parent=Msa0374790-mRNA-1 |
| chr3_1 | five_prime_UTR | 74314841 | 74315025 | 74314841 | ID=Msa0374790-mRNA-1:five_prime_utr;Parent=Msa0374790-mRNA-1 |
| chr3_1 | CDS | 74314601 | 74314840 | 74314601 | ID=Msa0374790-mRNA-1:cds;Parent=Msa0374790-mRNA-1 |
| chr3_1 | CDS | 74311609 | 74311746 | 74311609 | ID=Msa0374790-mRNA-1:cds;Parent=Msa0374790-mRNA-1 |
| chr3_1 | CDS | 74311348 | 74311530 | 74311348 | ID=Msa0374790-mRNA-1:cds;Parent=Msa0374790-mRNA-1 |
| chr3_1 | CDS | 74310810 | 74310967 | 74310810 | ID=Msa0374790-mRNA-1:cds;Parent=Msa0374790-mRNA-1 |
| chr3_1 | CDS | 74310607 | 74310706 | 74310607 | ID=Msa0374790-mRNA-1:cds;Parent=Msa0374790-mRNA-1 |
| chr3_1 | CDS | 74310397 | 74310508 | 74310397 | ID=Msa0374790-mRNA-1:cds;Parent=Msa0374790-mRNA-1 |
| chr3_1 | CDS | 74310082 | 74310221 | 74310082 | ID=Msa0374790-mRNA-1:cds;Parent=Msa0374790-mRNA-1 |
| chr3_1 | CDS | 74309801 | 74309986 | 74309801 | ID=Msa0374790-mRNA-1:cds;Parent=Msa0374790-mRNA-1 |
| chr3_1 | CDS | 74309518 | 74309685 | 74309518 | ID=Msa0374790-mRNA-1:cds;Parent=Msa0374790-mRNA-1 |
| chr3_1 | three_prime_UTR | 74309343 | 74309517 | 74309343 | ID=Msa0374790-mRNA-1:three_prime_utr;Parent=Msa0374790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
