Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0424000 | XP_013461349.1 | 95.789 | 475 | 9 | 4 | 1 | 471 | 1 | 468 | 0.0 | 934 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0424000 | sp|Q9LPL5|ODBA1_ARATH | 66.453 | 468 | 151 | 4 | 3 | 466 | 2 | 467 | 0.0 | 653 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0424000 | A0A072V066 | 95.789 | 475 | 9 | 4 | 1 | 471 | 1 | 468 | 0.0 | 934 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0031160 | Msa0424000 | 0.807390 | 5.174309e-50 | -8.615850e-47 |
Msa0143630 | Msa0424000 | 0.850589 | 1.539561e-60 | -8.615850e-47 |
Msa0374790 | Msa0424000 | 0.957757 | 1.251869e-115 | -8.615850e-47 |
Msa0424000 | Msa0470920 | 0.952923 | 8.479513e-111 | -8.615850e-47 |
Msa0424000 | Msa0476070 | 0.812146 | 4.909432e-51 | -8.615850e-47 |
Msa0424000 | Msa0481100 | 0.871299 | 7.599162e-67 | -8.615850e-47 |
Msa0424000 | Msa0577370 | 0.804621 | 1.978177e-49 | -8.615850e-47 |
Msa0424000 | Msa0580850 | 0.860824 | 1.577197e-63 | -8.615850e-47 |
Msa0424000 | Msa0602180 | 0.828051 | 1.114257e-54 | -8.615850e-47 |
Msa0424000 | Msa0643520 | 0.809930 | 1.483560e-50 | -8.615850e-47 |
Msa0424000 | Msa0656100 | 0.800046 | 1.731684e-48 | -8.615850e-47 |
Msa0424000 | Msa0683000 | 0.811604 | 6.443992e-51 | -8.615850e-47 |
Msa0424000 | Msa0982380 | 0.954952 | 9.243407e-113 | -8.615850e-47 |
Msa0424000 | Msa1211600 | 0.867342 | 1.468872e-65 | -8.615850e-47 |
Msa0424000 | Msa1217950 | 0.874929 | 4.597986e-68 | -8.615850e-47 |
Msa0424000 | Msa1219790 | 0.827604 | 1.427252e-54 | -8.615850e-47 |
Msa0424000 | Msa1267080 | 0.825698 | 4.067019e-54 | -8.615850e-47 |
Msa0424000 | Msa1339870 | 0.862563 | 4.639175e-64 | -8.615850e-47 |
Msa0424000 | Msa1401550 | 0.827988 | 1.153844e-54 | -8.615850e-47 |
Msa0424000 | Msa1462640 | 0.841398 | 4.867589e-58 | -8.615850e-47 |
Msa0268070 | Msa0424000 | 0.825391 | 4.809493e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0424000 | MtrunA17_Chr3g0125611 | 95.789 | 475 | 9 | 4 | 1 | 471 | 1 | 468 | 0.0 | 934 |
Msa0424000 | MtrunA17_Chr3g0130311 | 69.949 | 396 | 119 | 0 | 76 | 471 | 54 | 449 | 0.0 | 619 |
Msa0424000 | MtrunA17_Chr8g0371741 | 64.516 | 155 | 32 | 2 | 309 | 463 | 58 | 189 | 2.26e-52 | 175 |
Msa0424000 | MtrunA17_Chr8g0364201 | 28.923 | 325 | 221 | 4 | 122 | 442 | 58 | 376 | 3.76e-40 | 149 |
Msa0424000 | MtrunA17_Chr5g0414991 | 29.643 | 280 | 194 | 2 | 163 | 442 | 100 | 376 | 1.88e-37 | 141 |
Msa0424000 | MtrunA17_Chr8g0345911 | 26.567 | 335 | 232 | 4 | 116 | 438 | 69 | 401 | 7.44e-33 | 129 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0424000 | AT1G21400.1 | 66.453 | 468 | 151 | 4 | 3 | 466 | 2 | 467 | 0.0 | 653 |
Msa0424000 | AT1G21400.5 | 66.453 | 468 | 151 | 4 | 3 | 466 | 54 | 519 | 0.0 | 652 |
Msa0424000 | AT1G21400.3 | 74.485 | 388 | 99 | 0 | 79 | 466 | 5 | 392 | 0.0 | 637 |
Msa0424000 | AT5G09300.1 | 70.050 | 404 | 121 | 0 | 68 | 471 | 69 | 472 | 0.0 | 630 |
Msa0424000 | AT5G09300.2 | 71.139 | 395 | 114 | 0 | 77 | 471 | 7 | 401 | 0.0 | 627 |
Msa0424000 | AT1G21400.4 | 74.133 | 375 | 97 | 0 | 92 | 466 | 1 | 375 | 0.0 | 612 |
Msa0424000 | AT1G21400.2 | 74.133 | 375 | 97 | 0 | 92 | 466 | 1 | 375 | 0.0 | 612 |
Msa0424000 | AT5G09300.3 | 73.868 | 287 | 75 | 0 | 68 | 354 | 69 | 355 | 1.14e-164 | 469 |
Msa0424000 | AT1G21400.6 | 64.309 | 311 | 93 | 5 | 8 | 308 | 59 | 361 | 4.28e-141 | 409 |
Msa0424000 | AT5G09300.4 | 71.488 | 242 | 69 | 0 | 68 | 309 | 69 | 310 | 4.30e-133 | 388 |
Msa0424000 | AT5G34780.1 | 74.882 | 211 | 53 | 0 | 255 | 465 | 26 | 236 | 5.51e-106 | 320 |
Msa0424000 | AT1G59900.2 | 27.692 | 325 | 225 | 4 | 122 | 442 | 52 | 370 | 8.33e-39 | 145 |
Msa0424000 | AT1G59900.1 | 27.692 | 325 | 225 | 4 | 122 | 442 | 52 | 370 | 9.84e-39 | 145 |
Msa0424000 | AT1G24180.1 | 25.846 | 325 | 231 | 4 | 122 | 442 | 56 | 374 | 1.12e-35 | 137 |
Msa0424000 | AT1G01090.1 | 25.994 | 327 | 227 | 5 | 124 | 438 | 79 | 402 | 1.90e-29 | 120 |
Find 116 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGGAAACACAAATGATTT+TGG | 0.179644 | 3_2:+74183195 | Msa0424000:CDS |
CGCTGCTTATTCGCTTAAAA+TGG | 0.185602 | 3_2:+74183417 | Msa0424000:CDS |
CCTATAATAAAATGCTATAA+TGG | 0.260008 | 3_2:-74179094 | None:intergenic |
GTACAAATGGTTATTTGAAT+TGG | 0.266050 | 3_2:-74184581 | None:intergenic |
CTTTGAAGGTGCTGGTGATT+AGG | 0.280461 | 3_2:-74179196 | None:intergenic |
ATGTTCAGGCTCTCAGTTAT+AGG | 0.280560 | 3_2:+74184105 | Msa0424000:intron |
CAATTTGCTCATCAATGCTT+TGG | 0.310829 | 3_2:+74183177 | Msa0424000:CDS |
CCTGGACCTTCTCAATAATA+AGG | 0.321938 | 3_2:-74179164 | None:intergenic |
GTATCTATGTCTTACGCAAT+AGG | 0.330119 | 3_2:-74183282 | None:intergenic |
AACATCAGAAGGGTAATCTT+TGG | 0.337903 | 3_2:-74184543 | None:intergenic |
CTCATCAATTGGTCTGTACT+TGG | 0.357544 | 3_2:-74184159 | None:intergenic |
TCAGAATGTAAAATAAAGTT+GGG | 0.378426 | 3_2:+74184616 | Msa0424000:three_prime_UTR |
CTATAATAAAATGCTATAAT+GGG | 0.383565 | 3_2:-74179093 | None:intergenic |
TATCTATGTCTTACGCAATA+GGG | 0.387172 | 3_2:-74183281 | None:intergenic |
CAATTGATGAGATTGAATAT+TGG | 0.399761 | 3_2:+74184171 | Msa0424000:CDS |
TCCTTCTACCTCACCTCAAT+GGG | 0.406472 | 3_2:+74182665 | Msa0424000:CDS |
TGATGATATTATCTTGCCTC+AGG | 0.408765 | 3_2:+74182730 | Msa0424000:CDS |
GATGGTCACTCTTCAAACTA+TGG | 0.409967 | 3_2:+74182604 | Msa0424000:CDS |
AGCTAGCCAGCTTACTTTGA+AGG | 0.410513 | 3_2:-74179210 | None:intergenic |
TCCCATTGAGGTGAGGTAGA+AGG | 0.412039 | 3_2:-74182666 | None:intergenic |
ACATGATTGGTGTGTTTCAT+TGG | 0.420905 | 3_2:-74182464 | None:intergenic |
CAATATTCAATCTCATCAAT+TGG | 0.421389 | 3_2:-74184170 | None:intergenic |
GTCAGAATGTAAAATAAAGT+TGG | 0.424656 | 3_2:+74184615 | Msa0424000:three_prime_UTR |
TTCCTTCTACCTCACCTCAA+TGG | 0.425377 | 3_2:+74182664 | Msa0424000:CDS |
ACATCAGAAGGGTAATCTTT+GGG | 0.425630 | 3_2:-74184542 | None:intergenic |
GTGGAGTGACAAGGATGAAT+TGG | 0.426460 | 3_2:+74184250 | Msa0424000:CDS |
CCAGCTTACTTTGAAGGTGC+TGG | 0.439279 | 3_2:-74179204 | None:intergenic |
GAAACACACCAATCATGTTC+AGG | 0.441234 | 3_2:+74182469 | Msa0424000:CDS |
TGTTCAGGCTCTCAGTTATA+GGG | 0.444904 | 3_2:+74184106 | Msa0424000:intron |
CTTCGAAATTGTTCTTCGAC+AGG | 0.445186 | 3_2:-74183681 | None:intergenic |
AAGGTCAAGCTTATGGAATA+TGG | 0.446678 | 3_2:+74183896 | Msa0424000:CDS |
TGTGACTGAATATAGATAGA+TGG | 0.446701 | 3_2:+74179138 | Msa0424000:exon |
ATATGGAGTATCCGAGTAGA+TGG | 0.447516 | 3_2:+74183913 | Msa0424000:CDS |
GCTAGCTTGTTACTAGGATC+AGG | 0.454907 | 3_2:+74179226 | Msa0424000:CDS |
TGTTCAGGTTAGCAAAGAAA+TGG | 0.458006 | 3_2:+74182562 | Msa0424000:intron |
GTTCTCTTTCTTGTTCCTCA+AGG | 0.461180 | 3_2:-74184496 | None:intergenic |
GACTGCTAGTACCGTGAGCC+TGG | 0.461768 | 3_2:+74183123 | Msa0424000:intron |
AGTATGAACTGCACTATAAA+CGG | 0.462524 | 3_2:-74183950 | None:intergenic |
GGGAAAATTTATGATGGGAT+GGG | 0.465427 | 3_2:-74179073 | None:intergenic |
ATCCAACTGTGCATGTGCTT+TGG | 0.466487 | 3_2:-74179335 | None:intergenic |
AACTGCTTCTTCTCCCATTG+AGG | 0.472929 | 3_2:-74182678 | None:intergenic |
CAACTGTGCATGTGCTTTGG+TGG | 0.474846 | 3_2:-74179332 | None:intergenic |
TTATCTGTCGTAACAATGGA+TGG | 0.475021 | 3_2:+74183646 | Msa0424000:CDS |
GCTTATTCGCTTAAAATGGA+TGG | 0.487975 | 3_2:+74183421 | Msa0424000:CDS |
GTGGTGAAAGGTCAAGCTTA+TGG | 0.488654 | 3_2:+74183889 | Msa0424000:CDS |
AGACAAATGCCTATACACTA+TGG | 0.491107 | 3_2:+74183225 | Msa0424000:CDS |
TATAATGGGAAAATTTATGA+TGG | 0.494327 | 3_2:-74179079 | None:intergenic |
TGGAGCTTAGAAGCAGTGTA+AGG | 0.501197 | 3_2:+74184270 | Msa0424000:CDS |
TGTCATCCACGATGATGATC+AGG | 0.501340 | 3_2:+74179366 | Msa0424000:CDS |
ATATTCAGTCACAATTTCAC+AGG | 0.506274 | 3_2:-74179128 | None:intergenic |
TGAGATTGAATATTGGAAGA+TGG | 0.508510 | 3_2:+74184178 | Msa0424000:CDS |
TGGGAAAATTTATGATGGGA+TGG | 0.514861 | 3_2:-74179074 | None:intergenic |
ACTGTGAATTTGAGTACAAA+TGG | 0.515898 | 3_2:-74184594 | None:intergenic |
ATCTACAAAGGAACATCAGA+AGG | 0.517136 | 3_2:-74184554 | None:intergenic |
TTGTTAGAGCCATAGTGTAT+AGG | 0.517990 | 3_2:-74183234 | None:intergenic |
GTGAATCCAACTTTCCCTCC+AGG | 0.523019 | 3_2:-74182365 | None:intergenic |
CCGCGCCATAGCAGAACTCC+AGG | 0.523733 | 3_2:-74183141 | None:intergenic |
CACCAAAGCACATGCACAGT+TGG | 0.527776 | 3_2:+74179333 | Msa0424000:CDS |
TAGAAGCAGTGTAAGGAAGC+AGG | 0.529470 | 3_2:+74184277 | Msa0424000:CDS |
AAGCTGGCTAGCTTGTTACT+AGG | 0.530994 | 3_2:+74179220 | Msa0424000:CDS |
GGAAAATTTATGATGGGATG+GGG | 0.531529 | 3_2:-74179072 | None:intergenic |
GTGCTGGTGATTAGGAACTA+AGG | 0.533834 | 3_2:-74179188 | None:intergenic |
GTGATTAGGAACTAAGGTCC+TGG | 0.538397 | 3_2:-74179182 | None:intergenic |
ATGACATACCTGAACATGAT+TGG | 0.542831 | 3_2:-74182477 | None:intergenic |
TCGAAATTGTTCTTCGACAG+GGG | 0.543483 | 3_2:-74183679 | None:intergenic |
TCTGTACTTGGTTGAATCGT+CGG | 0.546416 | 3_2:-74184147 | None:intergenic |
CCTTATTATTGAGAAGGTCC+AGG | 0.551779 | 3_2:+74179164 | Msa0424000:CDS |
GGGTTGAAAGGAATGGTTGG+TGG | 0.552659 | 3_2:+74184231 | Msa0424000:CDS |
TGGCATCCTTATTATTGAGA+AGG | 0.553122 | 3_2:+74179158 | Msa0424000:CDS |
GTGAGCCTGGAGTTCTGCTA+TGG | 0.557948 | 3_2:+74183136 | Msa0424000:CDS |
TATCTGTCGTAACAATGGAT+GGG | 0.559058 | 3_2:+74183647 | Msa0424000:CDS |
TCAGTAAACATGTGCTCAAG+TGG | 0.559177 | 3_2:-74184449 | None:intergenic |
TTGGTTAGGTGATGGTATTG+TGG | 0.562170 | 3_2:+74183870 | Msa0424000:intron |
AATCATACCTCGATTAAGAC+TGG | 0.563171 | 3_2:-74184003 | None:intergenic |
CCAGCACCTTCAAAGTAAGC+TGG | 0.564260 | 3_2:+74179204 | Msa0424000:CDS |
TAAGCAGCGCCTACAGCTTG+AGG | 0.572650 | 3_2:-74183403 | None:intergenic |
TTACGTGATGATGCAACAAA+TGG | 0.572708 | 3_2:-74179304 | None:intergenic |
TGAATTGGAAATATCTACAA+AGG | 0.573033 | 3_2:-74184566 | None:intergenic |
CTTCTTCTCCCATTGAGGTG+AGG | 0.577078 | 3_2:-74182673 | None:intergenic |
GAAAGGTGTGAGAAGAAGAG+TGG | 0.579507 | 3_2:-74179267 | None:intergenic |
TATCGAGTCCTCGATGAAGA+TGG | 0.584034 | 3_2:+74182437 | Msa0424000:CDS |
GAAAATTTATGATGGGATGG+GGG | 0.587743 | 3_2:-74179071 | None:intergenic |
TTCGAAATTGTTCTTCGACA+GGG | 0.588433 | 3_2:-74183680 | None:intergenic |
CAGAATGTAAAATAAAGTTG+GGG | 0.590056 | 3_2:+74184617 | Msa0424000:three_prime_UTR |
AATGGGTTGAAAGGAATGGT+TGG | 0.592679 | 3_2:+74184228 | Msa0424000:CDS |
ATCTATGTCTTACGCAATAG+GGG | 0.597213 | 3_2:-74183280 | None:intergenic |
TTGTCTCGACAGCAAAGACG+TGG | 0.604152 | 3_2:-74178989 | None:intergenic |
TCATCGAGGACTCGATAGCA+AGG | 0.608678 | 3_2:-74182431 | None:intergenic |
GTGCATCATTTCCATCTACT+CGG | 0.610489 | 3_2:-74183924 | None:intergenic |
CCTGGAGTTCTGCTATGGCG+CGG | 0.620040 | 3_2:+74183141 | Msa0424000:CDS |
CAAACTTTCATCAAACCTTG+AGG | 0.623308 | 3_2:+74184481 | Msa0424000:CDS |
TTCTACGAGGTACAGAGGCA+AGG | 0.623632 | 3_2:+74182635 | Msa0424000:CDS |
ATAATGGGAAAATTTATGAT+GGG | 0.623755 | 3_2:-74179078 | None:intergenic |
CAGGCTCTCAGTTATAGGGT+AGG | 0.626263 | 3_2:+74184110 | Msa0424000:intron |
TGGCTGAGAAGAAGATCGAA+AGG | 0.629379 | 3_2:-74179284 | None:intergenic |
GACGTGGAGAGCTTGTGTCG+TGG | 0.630249 | 3_2:-74178973 | None:intergenic |
GAATGGTTGGTGGAGTGACA+AGG | 0.638989 | 3_2:+74184241 | Msa0424000:CDS |
GGTGATGGTATTGTGGTGAA+AGG | 0.640292 | 3_2:+74183877 | Msa0424000:intron |
ATAGCAGAACTCCAGGCTCA+CGG | 0.640845 | 3_2:-74183134 | None:intergenic |
TGTGAGGATGTATTCTGAGA+TGG | 0.641743 | 3_2:+74182586 | Msa0424000:CDS |
ACGAGACTGTGAAGTAATTG+TGG | 0.646505 | 3_2:-74183257 | None:intergenic |
CTGCAAAATTCATACCAGCA+TGG | 0.646981 | 3_2:-74183599 | None:intergenic |
GTAAACATGTGCTCAAGTGG+AGG | 0.651860 | 3_2:-74184446 | None:intergenic |
ACACAACTTCCTCAAGCTGT+AGG | 0.653871 | 3_2:+74183394 | Msa0424000:CDS |
TGGGGATGGAGGTACTAGTG+AGG | 0.654726 | 3_2:+74183471 | Msa0424000:CDS |
TCTACAAAGGAACATCAGAA+GGG | 0.660510 | 3_2:-74184553 | None:intergenic |
AGGTGTGAGAAGAAGAGTGG+TGG | 0.664800 | 3_2:-74179264 | None:intergenic |
TATTCAGTCACAATTTCACA+GGG | 0.667420 | 3_2:-74179127 | None:intergenic |
GCATATTCTACGAGGTACAG+AGG | 0.676162 | 3_2:+74182630 | Msa0424000:CDS |
TTGAATCGTCGGATGTAGAG+TGG | 0.676430 | 3_2:-74184136 | None:intergenic |
GCAAAGACCAGTCTTAATCG+AGG | 0.679916 | 3_2:+74183996 | Msa0424000:CDS |
AGAATGTAAAATAAAGTTGG+GGG | 0.697292 | 3_2:+74184618 | Msa0424000:three_prime_UTR |
TTGGCTCACCATCTTCATCG+AGG | 0.713485 | 3_2:-74182445 | None:intergenic |
TTAGCAAAGAAATGGCTGTG+AGG | 0.717152 | 3_2:+74182570 | Msa0424000:CDS |
CATGTACCTGATCATCATCG+TGG | 0.766769 | 3_2:-74179372 | None:intergenic |
TATGGACAGCATATTCTACG+AGG | 0.801534 | 3_2:+74182622 | Msa0424000:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTATAATTAATTTTTTAA+TGG | + | chr3_2:74180308-74180327 | Msa0424000:intron | 0.0% |
!! | TTATTTAAATTTATATAAAT+TGG | + | chr3_2:74180995-74181014 | Msa0424000:intron | 0.0% |
!! | AAGAAAAATGTATAAATAAA+GGG | - | chr3_2:74179680-74179699 | None:intergenic | 10.0% |
!! | TAAGAAAAATGTATAAATAA+AGG | - | chr3_2:74179681-74179700 | None:intergenic | 10.0% |
!!! | ATTTTGCTAATATAAATTTA+GGG | - | chr3_2:74180291-74180310 | None:intergenic | 10.0% |
!!! | AATTTTGCTAATATAAATTT+AGG | - | chr3_2:74180292-74180311 | None:intergenic | 10.0% |
!!! | TTATTTTTTTCATTTACAAA+AGG | + | chr3_2:74180486-74180505 | Msa0424000:intron | 10.0% |
!!! | TACAGTTTTTAATATTTTTT+TGG | + | chr3_2:74180541-74180560 | Msa0424000:intron | 10.0% |
!!! | AATTTTATTTATGACTAAAT+GGG | - | chr3_2:74180624-74180643 | None:intergenic | 10.0% |
!!! | TAATTTTATTTATGACTAAA+TGG | - | chr3_2:74180625-74180644 | None:intergenic | 10.0% |
!!! | ATTTAAAATTTTAAAACCAT+AGG | + | chr3_2:74181069-74181088 | Msa0424000:intron | 10.0% |
!!! | TTTAAAATTTTAAAACCATA+GGG | + | chr3_2:74181070-74181089 | Msa0424000:intron | 10.0% |
!!! | TTATTAAAATGTTACTTTTA+TGG | - | chr3_2:74184695-74184714 | None:intergenic | 10.0% |
!! | CTATAATAAAATGCTATAAT+GGG | - | chr3_2:74179096-74179115 | None:intergenic | 15.0% |
!! | AAAATATAGTACTTAGTTAA+CGG | - | chr3_2:74179414-74179433 | None:intergenic | 15.0% |
!! | TAATTAGAGTTATATTGTAT+TGG | - | chr3_2:74179617-74179636 | None:intergenic | 15.0% |
!! | AGAAAAATGTATAAATAAAG+GGG | - | chr3_2:74179679-74179698 | None:intergenic | 15.0% |
!! | AATTATAAATTAAAATCACG+TGG | + | chr3_2:74180053-74180072 | Msa0424000:intron | 15.0% |
!! | ATTATAAATTAAAATCACGT+GGG | + | chr3_2:74180054-74180073 | Msa0424000:intron | 15.0% |
!!! | ATCTTCTAAAAAAAAAATGA+AGG | - | chr3_2:74180141-74180160 | None:intergenic | 15.0% |
!!! | TTATCTTTTGATTCAATTAA+AGG | + | chr3_2:74180678-74180697 | Msa0424000:intron | 15.0% |
!!! | TATCTTTTGATTCAATTAAA+GGG | + | chr3_2:74180679-74180698 | Msa0424000:intron | 15.0% |
!!! | TTCATGTATTTTATTTTAGT+GGG | - | chr3_2:74180906-74180925 | None:intergenic | 15.0% |
!!! | ATTCATGTATTTTATTTTAG+TGG | - | chr3_2:74180907-74180926 | None:intergenic | 15.0% |
!!! | CAAATATTAGTATTTTTTTG+AGG | + | chr3_2:74181107-74181126 | Msa0424000:intron | 15.0% |
!!! | TTTTTGTGATAAAAAAAGTT+TGG | - | chr3_2:74181900-74181919 | None:intergenic | 15.0% |
!! | TATATTATTATCATTGTCTA+AGG | - | chr3_2:74181964-74181983 | None:intergenic | 15.0% |
!! | ACTGTTAAAAATAAAATACT+TGG | + | chr3_2:74182137-74182156 | Msa0424000:intron | 15.0% |
!!! | ATTAGGTTCTAAAATTATTT+TGG | + | chr3_2:74182200-74182219 | Msa0424000:intron | 15.0% |
!! | AATATAGCAAAATGAAAAAA+GGG | - | chr3_2:74182811-74182830 | None:intergenic | 15.0% |
!! | TAATATAGCAAAATGAAAAA+AGG | - | chr3_2:74182812-74182831 | None:intergenic | 15.0% |
!!! | CTGATATTTGAAATATTTTA+GGG | + | chr3_2:74183570-74183589 | Msa0424000:intron | 15.0% |
!! | TGAGATAAGAAGAAAAATAA+TGG | + | chr3_2:74179024-74179043 | Msa0424000:five_prime_UTR | 20.0% |
!!! | ATAATGGGAAAATTTATGAT+GGG | - | chr3_2:74179081-74179100 | None:intergenic | 20.0% |
!!! | TATAATGGGAAAATTTATGA+TGG | - | chr3_2:74179082-74179101 | None:intergenic | 20.0% |
!! | CCTATAATAAAATGCTATAA+TGG | - | chr3_2:74179097-74179116 | None:intergenic | 20.0% |
!!! | CCATTATAGCATTTTATTAT+AGG | + | chr3_2:74179094-74179113 | Msa0424000:five_prime_UTR | 20.0% |
!!! | GACACTTTTTTTTAGTAAAT+GGG | - | chr3_2:74179547-74179566 | None:intergenic | 20.0% |
!! | TTATAAATTAAAATCACGTG+GGG | + | chr3_2:74180055-74180074 | Msa0424000:intron | 20.0% |
!! | ACTAATATGACATGAAAAAA+TGG | + | chr3_2:74180418-74180437 | Msa0424000:intron | 20.0% |
!!! | TCATGTATTTTATTTTAGTG+GGG | - | chr3_2:74180905-74180924 | None:intergenic | 20.0% |
!!! | GTTTTTTTAAATAATCCCTA+TGG | - | chr3_2:74181088-74181107 | None:intergenic | 20.0% |
!!! | ATATTAGTATTTTTTTGAGG+TGG | + | chr3_2:74181110-74181129 | Msa0424000:intron | 20.0% |
!!! | AACTTTTATGTTTTTTTGGA+TGG | - | chr3_2:74181273-74181292 | None:intergenic | 20.0% |
!! | TTTGATTAGATGAGATTAAT+TGG | - | chr3_2:74181298-74181317 | None:intergenic | 20.0% |
!!! | TAGTTTTATTTTGTATGTGT+TGG | - | chr3_2:74181592-74181611 | None:intergenic | 20.0% |
!! | TTACAAATTATCCACTAAAA+AGG | - | chr3_2:74181804-74181823 | None:intergenic | 20.0% |
!! | AAATAAAATACTTGGAACAA+AGG | + | chr3_2:74182145-74182164 | Msa0424000:intron | 20.0% |
!! | ATGAATAATGCAACATTTAT+GGG | - | chr3_2:74182295-74182314 | None:intergenic | 20.0% |
!! | AATGAATAATGCAACATTTA+TGG | - | chr3_2:74182296-74182315 | None:intergenic | 20.0% |
!! | TGGATCTATAATAACAAAAT+TGG | + | chr3_2:74182847-74182866 | Msa0424000:intron | 20.0% |
!! | ATATCATAAGTGTCTTAAAT+TGG | - | chr3_2:74182900-74182919 | None:intergenic | 20.0% |
!!! | TTGAAATTTCATTAGTTTCA+TGG | + | chr3_2:74182988-74183007 | Msa0424000:intron | 20.0% |
!! | TATTAGTTAAGAAAATTGCA+GGG | - | chr3_2:74183029-74183048 | None:intergenic | 20.0% |
!! | TTATTAGTTAAGAAAATTGC+AGG | - | chr3_2:74183030-74183049 | None:intergenic | 20.0% |
!! | ATATAAGTGTTCAATAAAAC+AGG | - | chr3_2:74183065-74183084 | None:intergenic | 20.0% |
!! | TTATAACATGTTACAGTATA+TGG | - | chr3_2:74183307-74183326 | None:intergenic | 20.0% |
!!! | GCTGATATTTGAAATATTTT+AGG | + | chr3_2:74183569-74183588 | Msa0424000:intron | 20.0% |
!!! | TTCTAGTTTTTCTAATATCT+CGG | - | chr3_2:74183833-74183852 | None:intergenic | 20.0% |
!! | TGTGAATAGATTCAAAAAAT+GGG | + | chr3_2:74184211-74184230 | Msa0424000:CDS | 20.0% |
!! | TATTTAGTCCATATAAATCT+TGG | + | chr3_2:74184326-74184345 | Msa0424000:intron | 20.0% |
!! | AAAATGTCAAAAATCAAAAC+AGG | - | chr3_2:74184366-74184385 | None:intergenic | 20.0% |
!! | TCAGAATGTAAAATAAAGTT+GGG | + | chr3_2:74184616-74184635 | Msa0424000:three_prime_UTR | 20.0% |
! | TTAGAACTAAAGAAACTGAA+CGG | - | chr3_2:74179450-74179469 | None:intergenic | 25.0% |
!!! | GGACACTTTTTTTTAGTAAA+TGG | - | chr3_2:74179548-74179567 | None:intergenic | 25.0% |
!!! | TGAAATGACTCAGTTATTTT+GGG | - | chr3_2:74179569-74179588 | None:intergenic | 25.0% |
!! | TTGAAATGACTCAGTTATTT+TGG | - | chr3_2:74179570-74179589 | None:intergenic | 25.0% |
! | GAATAAAATGAGATAAGTTC+AGG | - | chr3_2:74179789-74179808 | None:intergenic | 25.0% |
! | ATGAAGTGAAATACAAAATG+TGG | + | chr3_2:74179869-74179888 | Msa0424000:intron | 25.0% |
! | AAATTATTACAAGAATCACG+TGG | + | chr3_2:74180098-74180117 | Msa0424000:intron | 25.0% |
! | AATTATTACAAGAATCACGT+GGG | + | chr3_2:74180099-74180118 | Msa0424000:intron | 25.0% |
!! | AGTGATTTTTGCTAAAGATA+TGG | + | chr3_2:74180735-74180754 | Msa0424000:intron | 25.0% |
!!! | AAGATTTAAGTTGAGGAAAT+TGG | - | chr3_2:74180793-74180812 | None:intergenic | 25.0% |
!!! | ATGTATTTTATTTTAGTGGG+GGG | - | chr3_2:74180903-74180922 | None:intergenic | 25.0% |
!!! | CATGTATTTTATTTTAGTGG+GGG | - | chr3_2:74180904-74180923 | None:intergenic | 25.0% |
!!! | GGTGAACTTTTATGTTTTTT+TGG | - | chr3_2:74181277-74181296 | None:intergenic | 25.0% |
! | TTACAAACCATTCATAGAAT+AGG | + | chr3_2:74181331-74181350 | Msa0424000:intron | 25.0% |
! | ATAAAGTTGACTAAGTTGTT+GGG | - | chr3_2:74181456-74181475 | None:intergenic | 25.0% |
! | TATAAAGTTGACTAAGTTGT+TGG | - | chr3_2:74181457-74181476 | None:intergenic | 25.0% |
!!! | AATTTTAACAAAATCGCTGT+AGG | - | chr3_2:74181488-74181507 | None:intergenic | 25.0% |
!!! | ATAATCACCTTTTTTTAGTG+TGG | + | chr3_2:74181517-74181536 | Msa0424000:intron | 25.0% |
! | ATCAAATCCACACTAAAAAA+AGG | - | chr3_2:74181527-74181546 | None:intergenic | 25.0% |
! | TAAAAAAAGTTTGGATGACT+TGG | - | chr3_2:74181891-74181910 | None:intergenic | 25.0% |
! | TTATCACAAAAATAGAGTCT+AGG | + | chr3_2:74181908-74181927 | Msa0424000:intron | 25.0% |
!! | ATAAATTGGTCTATTATTGG+AGG | - | chr3_2:74181937-74181956 | None:intergenic | 25.0% |
!! | GTGATAAATTGGTCTATTAT+TGG | - | chr3_2:74181940-74181959 | None:intergenic | 25.0% |
! | TTCTTTAGTTAAAACACAAC+TGG | + | chr3_2:74182002-74182021 | Msa0424000:intron | 25.0% |
!! | TTGATCTCATACACATATTT+TGG | - | chr3_2:74182176-74182195 | None:intergenic | 25.0% |
! | CAACATTTATGGGAATAATT+TGG | - | chr3_2:74182285-74182304 | None:intergenic | 25.0% |
! | ATCATATTGTACTATGTAGT+CGG | + | chr3_2:74182512-74182531 | Msa0424000:intron | 25.0% |
!!! | TTCTTCAACGATATTTTAAG+AGG | - | chr3_2:74182539-74182558 | None:intergenic | 25.0% |
!! | TAAATTGGTGATTCACATTT+AGG | - | chr3_2:74182885-74182904 | None:intergenic | 25.0% |
!! | TTTGGAAACACAAATGATTT+TGG | + | chr3_2:74183195-74183214 | Msa0424000:CDS | 25.0% |
!!! | AACACAAATGATTTTGGTAA+AGG | + | chr3_2:74183201-74183220 | Msa0424000:CDS | 25.0% |
! | CTGAATAAGTTAATGTTGTT+CGG | + | chr3_2:74183358-74183377 | Msa0424000:intron | 25.0% |
! | TATATGAACTATCTCTCTTA+AGG | + | chr3_2:74183508-74183527 | Msa0424000:intron | 25.0% |
! | TATTTCAAATATCAGCAATG+AGG | - | chr3_2:74183565-74183584 | None:intergenic | 25.0% |
! | TTACGACAGATAAAAATAAC+AGG | - | chr3_2:74183639-74183658 | None:intergenic | 25.0% |
!! | ATTTTTATCTGTCGTAACAA+TGG | + | chr3_2:74183642-74183661 | Msa0424000:CDS | 25.0% |
!! | GTTTGAGACTAAAAATAAGT+AGG | - | chr3_2:74183723-74183742 | None:intergenic | 25.0% |
! | CATAAAGTTGAACATGAATT+AGG | - | chr3_2:74183795-74183814 | None:intergenic | 25.0% |
! | AAACTAGAAACTTACATGTT+TGG | + | chr3_2:74183844-74183863 | Msa0424000:intron | 25.0% |
! | CAATATTCAATCTCATCAAT+TGG | - | chr3_2:74184173-74184192 | None:intergenic | 25.0% |
! | CAATTGATGAGATTGAATAT+TGG | + | chr3_2:74184171-74184190 | Msa0424000:CDS | 25.0% |
!!! | CATTTTTTGAATCTATTCAC+AGG | - | chr3_2:74184212-74184231 | None:intergenic | 25.0% |
! | CTGTGAATAGATTCAAAAAA+TGG | + | chr3_2:74184210-74184229 | Msa0424000:CDS | 25.0% |
! | TGAATTGGAAATATCTACAA+AGG | - | chr3_2:74184569-74184588 | None:intergenic | 25.0% |
! | GTACAAATGGTTATTTGAAT+TGG | - | chr3_2:74184584-74184603 | None:intergenic | 25.0% |
! | GTCAGAATGTAAAATAAAGT+TGG | + | chr3_2:74184615-74184634 | Msa0424000:three_prime_UTR | 25.0% |
! | CAGAATGTAAAATAAAGTTG+GGG | + | chr3_2:74184617-74184636 | Msa0424000:three_prime_UTR | 25.0% |
! | AGAATGTAAAATAAAGTTGG+GGG | + | chr3_2:74184618-74184637 | Msa0424000:three_prime_UTR | 25.0% |
TATTCAGTCACAATTTCACA+GGG | - | chr3_2:74179130-74179149 | None:intergenic | 30.0% | |
ATATTCAGTCACAATTTCAC+AGG | - | chr3_2:74179131-74179150 | None:intergenic | 30.0% | |
TGTGACTGAATATAGATAGA+TGG | + | chr3_2:74179138-74179157 | Msa0424000:exon | 30.0% | |
ATGTATAAATAAAGGGGAAG+TGG | - | chr3_2:74179673-74179692 | None:intergenic | 30.0% | |
ATCTGTGTGAAAAATCAAAC+TGG | + | chr3_2:74179701-74179720 | Msa0424000:intron | 30.0% | |
TCTCATCAATAGAATTCAGA+TGG | - | chr3_2:74179763-74179782 | None:intergenic | 30.0% | |
ATCAATTAGAGAAAACACGT+GGG | - | chr3_2:74180015-74180034 | None:intergenic | 30.0% | |
AATCAATTAGAGAAAACACG+TGG | - | chr3_2:74180016-74180035 | None:intergenic | 30.0% | |
ATTATTACAAGAATCACGTG+GGG | + | chr3_2:74180100-74180119 | Msa0424000:intron | 30.0% | |
!!! | CGATGACATTTTTAGTAGAA+AGG | + | chr3_2:74180395-74180414 | Msa0424000:intron | 30.0% |
ATGGGATATTTAGTGATTGT+AGG | - | chr3_2:74180606-74180625 | None:intergenic | 30.0% | |
TGCTCTAATCCATATAATGA+TGG | + | chr3_2:74180762-74180781 | Msa0424000:intron | 30.0% | |
GCTCTAATCCATATAATGAT+GGG | + | chr3_2:74180763-74180782 | Msa0424000:intron | 30.0% | |
!! | TGTACCGTTAGTAATTTGTT+AGG | + | chr3_2:74181139-74181158 | Msa0424000:intron | 30.0% |
!! | GTACCGTTAGTAATTTGTTA+GGG | + | chr3_2:74181140-74181159 | Msa0424000:intron | 30.0% |
!! | TACCGTTAGTAATTTGTTAG+GGG | + | chr3_2:74181141-74181160 | Msa0424000:intron | 30.0% |
TACCCCTAACAAATTACTAA+CGG | - | chr3_2:74181146-74181165 | None:intergenic | 30.0% | |
TATACTAAGTCCCAAAATGT+GGG | - | chr3_2:74181237-74181256 | None:intergenic | 30.0% | |
TTATACTAAGTCCCAAAATG+TGG | - | chr3_2:74181238-74181257 | None:intergenic | 30.0% | |
!!! | ATTTTGGGACTTAGTATAAG+TGG | + | chr3_2:74181239-74181258 | Msa0424000:intron | 30.0% |
TAAGTTGTTGGGGAATAAAA+AGG | - | chr3_2:74181445-74181464 | None:intergenic | 30.0% | |
TAAAGTTGACTAAGTTGTTG+GGG | - | chr3_2:74181455-74181474 | None:intergenic | 30.0% | |
TTGTCTAAGGAGTGATAAAT+TGG | - | chr3_2:74181951-74181970 | None:intergenic | 30.0% | |
TGTATGAGATCAACAGAATT+AGG | + | chr3_2:74182183-74182202 | Msa0424000:intron | 30.0% | |
TGAAATCCCTAAAATAAAGC+AGG | + | chr3_2:74182226-74182245 | Msa0424000:intron | 30.0% | |
GAAATCCCTAAAATAAAGCA+GGG | + | chr3_2:74182227-74182246 | Msa0424000:intron | 30.0% | |
AGGGAGAATTAAATAATGCT+GGG | - | chr3_2:74182320-74182339 | None:intergenic | 30.0% | |
TTATTTAATTCTCCCTCTCA+CGG | + | chr3_2:74182324-74182343 | Msa0424000:intron | 30.0% | |
ATCGTTGAAGAAATATGTTC+AGG | + | chr3_2:74182547-74182566 | Msa0424000:intron | 30.0% | |
! | GAATTTGAAAAGAAGCATGA+GGG | - | chr3_2:74182784-74182803 | None:intergenic | 30.0% |
! | TGAATTTGAAAAGAAGCATG+AGG | - | chr3_2:74182785-74182804 | None:intergenic | 30.0% |
TATTACACTTTCTGCTATTG+TGG | + | chr3_2:74182827-74182846 | Msa0424000:intron | 30.0% | |
TATCTATGTCTTACGCAATA+GGG | - | chr3_2:74183284-74183303 | None:intergenic | 30.0% | |
! | TATGAATTTTGCAGCAGTAA+TGG | + | chr3_2:74183608-74183627 | Msa0424000:CDS | 30.0% |
!! | AAACTTACATGTTTGGTGTT+TGG | + | chr3_2:74183851-74183870 | Msa0424000:intron | 30.0% |
AGTATGAACTGCACTATAAA+CGG | - | chr3_2:74183953-74183972 | None:intergenic | 30.0% | |
! | TCTTAGCTTGACGTAAAATT+AGG | - | chr3_2:74184039-74184058 | None:intergenic | 30.0% |
! | ATTTTCACTAACTGATCTCA+TGG | + | chr3_2:74184076-74184095 | Msa0424000:intron | 30.0% |
TGAGATTGAATATTGGAAGA+TGG | + | chr3_2:74184178-74184197 | Msa0424000:CDS | 30.0% | |
!! | GATTCAAAAAATGGGTTGAA+AGG | + | chr3_2:74184219-74184238 | Msa0424000:CDS | 30.0% |
!! | AAAAAATGGGTTGAAAGGAA+TGG | + | chr3_2:74184224-74184243 | Msa0424000:CDS | 30.0% |
CATGCATACCAAGATTTATA+TGG | - | chr3_2:74184337-74184356 | None:intergenic | 30.0% | |
TGTCAAAAATCAAAACAGGT+TGG | - | chr3_2:74184362-74184381 | None:intergenic | 30.0% | |
ACTGTGAATTTGAGTACAAA+TGG | - | chr3_2:74184597-74184616 | None:intergenic | 30.0% | |
! | GAAAATTTATGATGGGATGG+GGG | - | chr3_2:74179074-74179093 | None:intergenic | 35.0% |
! | GGAAAATTTATGATGGGATG+GGG | - | chr3_2:74179075-74179094 | None:intergenic | 35.0% |
! | GGGAAAATTTATGATGGGAT+GGG | - | chr3_2:74179076-74179095 | None:intergenic | 35.0% |
! | TGGGAAAATTTATGATGGGA+TGG | - | chr3_2:74179077-74179096 | None:intergenic | 35.0% |
TGGCATCCTTATTATTGAGA+AGG | + | chr3_2:74179158-74179177 | Msa0424000:CDS | 35.0% | |
! | TTACGTGATGATGCAACAAA+TGG | - | chr3_2:74179307-74179326 | None:intergenic | 35.0% |
TATGCAATTCTTCACTCACT+AGG | - | chr3_2:74179477-74179496 | None:intergenic | 35.0% | |
AGTAAATGGGTCAGATATTC+CGG | - | chr3_2:74179534-74179553 | None:intergenic | 35.0% | |
!! | TTTTATTCGCCTCTGAGAAT+CGG | + | chr3_2:74179801-74179820 | Msa0424000:intron | 35.0% |
! | ACTTCATCTTTTCTTGCTAG+TGG | - | chr3_2:74179856-74179875 | None:intergenic | 35.0% |
GTGAAATACAAAATGTGGAG+TGG | + | chr3_2:74179874-74179893 | Msa0424000:intron | 35.0% | |
TGTGGAGTGGAGTAAAAATT+AGG | + | chr3_2:74179887-74179906 | Msa0424000:intron | 35.0% | |
GTGGAGTGGAGTAAAAATTA+GGG | + | chr3_2:74179888-74179907 | Msa0424000:intron | 35.0% | |
TTGGAATGCCCATCATTATA+TGG | - | chr3_2:74180774-74180793 | None:intergenic | 35.0% | |
!! | TCGTTCGAAGATTTAAGTTG+AGG | - | chr3_2:74180800-74180819 | None:intergenic | 35.0% |
! | TAGTACTACACCCACATTTT+GGG | + | chr3_2:74181224-74181243 | Msa0424000:intron | 35.0% |
AACCATTCATAGAATAGGCA+CGG | + | chr3_2:74181336-74181355 | Msa0424000:intron | 35.0% | |
CTTGTGGAAAAACAATCTTG+TGG | - | chr3_2:74181363-74181382 | None:intergenic | 35.0% | |
AACAAAATCGCTGTAGGTAT+GGG | - | chr3_2:74181482-74181501 | None:intergenic | 35.0% | |
TAACAAAATCGCTGTAGGTA+TGG | - | chr3_2:74181483-74181502 | None:intergenic | 35.0% | |
! | ATTTTGTATGTGTTGGACAG+TGG | - | chr3_2:74181585-74181604 | None:intergenic | 35.0% |
! | GAGTTTGAAGACCTTTTTAG+TGG | + | chr3_2:74181790-74181809 | Msa0424000:intron | 35.0% |
TTGGTCTGACCATAAAGATT+AGG | + | chr3_2:74181857-74181876 | Msa0424000:intron | 35.0% | |
TGGTCTGACCATAAAGATTA+GGG | + | chr3_2:74181858-74181877 | Msa0424000:intron | 35.0% | |
GATTCCATCCCTAATCTTTA+TGG | - | chr3_2:74181869-74181888 | None:intergenic | 35.0% | |
GGGAGAATTAAATAATGCTG+GGG | - | chr3_2:74182319-74182338 | None:intergenic | 35.0% | |
GAGGGAGAATTAAATAATGC+TGG | - | chr3_2:74182321-74182340 | None:intergenic | 35.0% | |
!!! | CTTCAGTTCATTGATTTTCC+TGG | + | chr3_2:74182347-74182366 | Msa0424000:intron | 35.0% |
!!! | AGTTCATTGATTTTCCTGGA+GGG | + | chr3_2:74182351-74182370 | Msa0424000:intron | 35.0% |
ACATGATTGGTGTGTTTCAT+TGG | - | chr3_2:74182467-74182486 | None:intergenic | 35.0% | |
ATGACATACCTGAACATGAT+TGG | - | chr3_2:74182480-74182499 | None:intergenic | 35.0% | |
! | TGTTCAGGTTAGCAAAGAAA+TGG | + | chr3_2:74182562-74182581 | Msa0424000:intron | 35.0% |
TGATGATATTATCTTGCCTC+AGG | + | chr3_2:74182730-74182749 | Msa0424000:CDS | 35.0% | |
! | ATTAGTTTCATGGACCAAGT+TGG | + | chr3_2:74182998-74183017 | Msa0424000:intron | 35.0% |
TAGTTAAGAAAATTGCAGGG+TGG | - | chr3_2:74183026-74183045 | None:intergenic | 35.0% | |
! | CAATTTGCTCATCAATGCTT+TGG | + | chr3_2:74183177-74183196 | Msa0424000:CDS | 35.0% |
AGACAAATGCCTATACACTA+TGG | + | chr3_2:74183225-74183244 | Msa0424000:CDS | 35.0% | |
TTGTTAGAGCCATAGTGTAT+AGG | - | chr3_2:74183237-74183256 | None:intergenic | 35.0% | |
ATCTATGTCTTACGCAATAG+GGG | - | chr3_2:74183283-74183302 | None:intergenic | 35.0% | |
GTATCTATGTCTTACGCAAT+AGG | - | chr3_2:74183285-74183304 | None:intergenic | 35.0% | |
GCTTATTCGCTTAAAATGGA+TGG | + | chr3_2:74183421-74183440 | Msa0424000:CDS | 35.0% | |
! | CTTGTGCAGTAACATTTTGT+GGG | + | chr3_2:74183452-74183471 | Msa0424000:CDS | 35.0% |
! | TTGTGCAGTAACATTTTGTG+GGG | + | chr3_2:74183453-74183472 | Msa0424000:CDS | 35.0% |
TTATCTGTCGTAACAATGGA+TGG | + | chr3_2:74183646-74183665 | Msa0424000:CDS | 35.0% | |
TATCTGTCGTAACAATGGAT+GGG | + | chr3_2:74183647-74183666 | Msa0424000:CDS | 35.0% | |
TTCGAAATTGTTCTTCGACA+GGG | - | chr3_2:74183683-74183702 | None:intergenic | 35.0% | |
AGCGCATAAGCCTTTAATTA+AGG | + | chr3_2:74183767-74183786 | Msa0424000:intron | 35.0% | |
GCGCATAAGCCTTTAATTAA+GGG | + | chr3_2:74183768-74183787 | Msa0424000:intron | 35.0% | |
CGCATAAGCCTTTAATTAAG+GGG | + | chr3_2:74183769-74183788 | Msa0424000:intron | 35.0% | |
GAATTAGGCCCCTTAATTAA+AGG | - | chr3_2:74183780-74183799 | None:intergenic | 35.0% | |
!! | TACATGTTTGGTGTTTGGTT+AGG | + | chr3_2:74183856-74183875 | Msa0424000:intron | 35.0% |
AAGGTCAAGCTTATGGAATA+TGG | + | chr3_2:74183896-74183915 | Msa0424000:CDS | 35.0% | |
AATCATACCTCGATTAAGAC+TGG | - | chr3_2:74184006-74184025 | None:intergenic | 35.0% | |
CAAACTTTCATCAAACCTTG+AGG | + | chr3_2:74184481-74184500 | Msa0424000:CDS | 35.0% | |
ACATCAGAAGGGTAATCTTT+GGG | - | chr3_2:74184545-74184564 | None:intergenic | 35.0% | |
AACATCAGAAGGGTAATCTT+TGG | - | chr3_2:74184546-74184565 | None:intergenic | 35.0% | |
TCTACAAAGGAACATCAGAA+GGG | - | chr3_2:74184556-74184575 | None:intergenic | 35.0% | |
ATCTACAAAGGAACATCAGA+AGG | - | chr3_2:74184557-74184576 | None:intergenic | 35.0% | |
CCTGGACCTTCTCAATAATA+AGG | - | chr3_2:74179167-74179186 | None:intergenic | 40.0% | |
CCTTATTATTGAGAAGGTCC+AGG | + | chr3_2:74179164-74179183 | Msa0424000:CDS | 40.0% | |
GTAAATGGGTCAGATATTCC+GGG | - | chr3_2:74179533-74179552 | None:intergenic | 40.0% | |
! | TCAAACTGGCTCAGATATTC+CGG | + | chr3_2:74179715-74179734 | Msa0424000:intron | 40.0% |
! | TTTATTCGCCTCTGAGAATC+GGG | + | chr3_2:74179802-74179821 | Msa0424000:intron | 40.0% |
!! | GTCATCGATGTTTTGTTCAG+AGG | - | chr3_2:74180382-74180401 | None:intergenic | 40.0% |
TCCAATTCAAGACGTGAACA+AGG | + | chr3_2:74180653-74180672 | Msa0424000:intron | 40.0% | |
ACCTTGTTCACGTCTTGAAT+TGG | - | chr3_2:74180657-74180676 | None:intergenic | 40.0% | |
! | GTAGTACTACACCCACATTT+TGG | + | chr3_2:74181223-74181242 | Msa0424000:intron | 40.0% |
TTAACCGTATCTCTTGGTAG+TGG | - | chr3_2:74181386-74181405 | None:intergenic | 40.0% | |
ACTACCAAGAGATACGGTTA+AGG | + | chr3_2:74181385-74181404 | Msa0424000:intron | 40.0% | |
CAATCCTTAACCGTATCTCT+TGG | - | chr3_2:74181392-74181411 | None:intergenic | 40.0% | |
ACAAAATCGCTGTAGGTATG+GGG | - | chr3_2:74181481-74181500 | None:intergenic | 40.0% | |
TCCTTTCTTTCACAAAGTCG+AGG | + | chr3_2:74181689-74181708 | Msa0424000:intron | 40.0% | |
GATGTGTATTCAACTCACGT+TGG | + | chr3_2:74181768-74181787 | Msa0424000:intron | 40.0% | |
CTGACCATAAAGATTAGGGA+TGG | + | chr3_2:74181862-74181881 | Msa0424000:intron | 40.0% | |
ATCCCTAAAATAAAGCAGGG+TGG | + | chr3_2:74182230-74182249 | Msa0424000:intron | 40.0% | |
!!! | AGCCACCCTGCTTTATTTTA+GGG | - | chr3_2:74182235-74182254 | None:intergenic | 40.0% |
!!! | AAGCCACCCTGCTTTATTTT+AGG | - | chr3_2:74182236-74182255 | None:intergenic | 40.0% |
!!! | CAGTTCATTGATTTTCCTGG+AGG | + | chr3_2:74182350-74182369 | Msa0424000:intron | 40.0% |
GAAACACACCAATCATGTTC+AGG | + | chr3_2:74182469-74182488 | Msa0424000:CDS | 40.0% | |
TTAGCAAAGAAATGGCTGTG+AGG | + | chr3_2:74182570-74182589 | Msa0424000:CDS | 40.0% | |
! | TGTGAGGATGTATTCTGAGA+TGG | + | chr3_2:74182586-74182605 | Msa0424000:CDS | 40.0% |
GATGGTCACTCTTCAAACTA+TGG | + | chr3_2:74182604-74182623 | Msa0424000:CDS | 40.0% | |
TATGGACAGCATATTCTACG+AGG | + | chr3_2:74182622-74182641 | Msa0424000:CDS | 40.0% | |
ACGAGACTGTGAAGTAATTG+TGG | - | chr3_2:74183260-74183279 | None:intergenic | 40.0% | |
CGCTGCTTATTCGCTTAAAA+TGG | + | chr3_2:74183417-74183436 | Msa0424000:CDS | 40.0% | |
! | GCTTGTGCAGTAACATTTTG+TGG | + | chr3_2:74183451-74183470 | Msa0424000:CDS | 40.0% |
!! | TTTTAGGGAGATTTCCATGC+TGG | + | chr3_2:74183585-74183604 | Msa0424000:intron | 40.0% |
CTGCAAAATTCATACCAGCA+TGG | - | chr3_2:74183602-74183621 | None:intergenic | 40.0% | |
! | GAATTTTGCAGCAGTAATGG+AGG | + | chr3_2:74183611-74183630 | Msa0424000:CDS | 40.0% |
TCGAAATTGTTCTTCGACAG+GGG | - | chr3_2:74183682-74183701 | None:intergenic | 40.0% | |
CTTCGAAATTGTTCTTCGAC+AGG | - | chr3_2:74183684-74183703 | None:intergenic | 40.0% | |
!! | TTTGGTGTTTGGTTAGGTGA+TGG | + | chr3_2:74183862-74183881 | Msa0424000:intron | 40.0% |
! | TTGGTTAGGTGATGGTATTG+TGG | + | chr3_2:74183870-74183889 | Msa0424000:intron | 40.0% |
! | ATATGGAGTATCCGAGTAGA+TGG | + | chr3_2:74183913-74183932 | Msa0424000:CDS | 40.0% |
GTGCATCATTTCCATCTACT+CGG | - | chr3_2:74183927-74183946 | None:intergenic | 40.0% | |
TCTCATGGTGAATGATGTTC+AGG | + | chr3_2:74184091-74184110 | Msa0424000:intron | 40.0% | |
ATGTTCAGGCTCTCAGTTAT+AGG | + | chr3_2:74184105-74184124 | Msa0424000:intron | 40.0% | |
TGTTCAGGCTCTCAGTTATA+GGG | + | chr3_2:74184106-74184125 | Msa0424000:intron | 40.0% | |
TCTGTACTTGGTTGAATCGT+CGG | - | chr3_2:74184150-74184169 | None:intergenic | 40.0% | |
! | CTCATCAATTGGTCTGTACT+TGG | - | chr3_2:74184162-74184181 | None:intergenic | 40.0% |
!! | AATGGGTTGAAAGGAATGGT+TGG | + | chr3_2:74184228-74184247 | Msa0424000:CDS | 40.0% |
TCAGTAAACATGTGCTCAAG+TGG | - | chr3_2:74184452-74184471 | None:intergenic | 40.0% | |
GTTCTCTTTCTTGTTCCTCA+AGG | - | chr3_2:74184499-74184518 | None:intergenic | 40.0% | |
! | TTATGATGGGATGGGGGAAA+AGG | - | chr3_2:74179068-74179087 | None:intergenic | 45.0% |
GTGATTAGGAACTAAGGTCC+TGG | - | chr3_2:74179185-74179204 | None:intergenic | 45.0% | |
! | GTGCTGGTGATTAGGAACTA+AGG | - | chr3_2:74179191-74179210 | None:intergenic | 45.0% |
!! | CTTTGAAGGTGCTGGTGATT+AGG | - | chr3_2:74179199-74179218 | None:intergenic | 45.0% |
AGCTAGCCAGCTTACTTTGA+AGG | - | chr3_2:74179213-74179232 | None:intergenic | 45.0% | |
!! | AAGCTGGCTAGCTTGTTACT+AGG | + | chr3_2:74179220-74179239 | Msa0424000:CDS | 45.0% |
!! | GCTAGCTTGTTACTAGGATC+AGG | + | chr3_2:74179226-74179245 | Msa0424000:CDS | 45.0% |
! | GAAAGGTGTGAGAAGAAGAG+TGG | - | chr3_2:74179270-74179289 | None:intergenic | 45.0% |
TGGCTGAGAAGAAGATCGAA+AGG | - | chr3_2:74179287-74179306 | None:intergenic | 45.0% | |
ATCCAACTGTGCATGTGCTT+TGG | - | chr3_2:74179338-74179357 | None:intergenic | 45.0% | |
TGTCATCCACGATGATGATC+AGG | + | chr3_2:74179366-74179385 | Msa0424000:CDS | 45.0% | |
CATGTACCTGATCATCATCG+TGG | - | chr3_2:74179375-74179394 | None:intergenic | 45.0% | |
! | CAAACTGGCTCAGATATTCC+GGG | + | chr3_2:74179716-74179735 | Msa0424000:intron | 45.0% |
AAAAGTTATTCCCTCCGTCC+CGG | - | chr3_2:74179737-74179756 | None:intergenic | 45.0% | |
! | TTATTCGCCTCTGAGAATCG+GGG | + | chr3_2:74179803-74179822 | Msa0424000:intron | 45.0% |
! | AAGGGTCGTAGCGTTCTTTT+TGG | + | chr3_2:74180697-74180716 | Msa0424000:intron | 45.0% |
GTCCGTGCCTATTCTATGAA+TGG | - | chr3_2:74181341-74181360 | None:intergenic | 45.0% | |
!! | TATCTCTTGGTAGTGGCTTG+TGG | - | chr3_2:74181379-74181398 | None:intergenic | 45.0% |
CAAGCCACTACCAAGAGATA+CGG | + | chr3_2:74181379-74181398 | Msa0424000:intron | 45.0% | |
GCCTCGACTTTGTGAAAGAA+AGG | - | chr3_2:74181693-74181712 | None:intergenic | 45.0% | |
TCAACACTCTTTGAGCCTTG+AGG | + | chr3_2:74181833-74181852 | Msa0424000:intron | 45.0% | |
ACTCTTTGAGCCTTGAGGTT+TGG | + | chr3_2:74181838-74181857 | Msa0424000:intron | 45.0% | |
TATGGTCAGACCAAACCTCA+AGG | - | chr3_2:74181851-74181870 | None:intergenic | 45.0% | |
AATGAACTGAAGCCGTGAGA+GGG | - | chr3_2:74182339-74182358 | None:intergenic | 45.0% | |
! | GATTTTCCTGGAGGGAAAGT+TGG | + | chr3_2:74182359-74182378 | Msa0424000:CDS | 45.0% |
TATCGAGTCCTCGATGAAGA+TGG | + | chr3_2:74182437-74182456 | Msa0424000:CDS | 45.0% | |
GCATATTCTACGAGGTACAG+AGG | + | chr3_2:74182630-74182649 | Msa0424000:CDS | 45.0% | |
TTCCTTCTACCTCACCTCAA+TGG | + | chr3_2:74182664-74182683 | Msa0424000:CDS | 45.0% | |
TCCTTCTACCTCACCTCAAT+GGG | + | chr3_2:74182665-74182684 | Msa0424000:CDS | 45.0% | |
AACTGCTTCTTCTCCCATTG+AGG | - | chr3_2:74182681-74182700 | None:intergenic | 45.0% | |
GAGGGAATTTCAATGCCTTG+CGG | - | chr3_2:74182766-74182785 | None:intergenic | 45.0% | |
ACACAACTTCCTCAAGCTGT+AGG | + | chr3_2:74183394-74183413 | Msa0424000:CDS | 45.0% | |
! | GCAGTAACATTTTGTGGGGA+TGG | + | chr3_2:74183457-74183476 | Msa0424000:CDS | 45.0% |
! | GTAACATTTTGTGGGGATGG+AGG | + | chr3_2:74183460-74183479 | Msa0424000:CDS | 45.0% |
! | GGTGATGGTATTGTGGTGAA+AGG | + | chr3_2:74183877-74183896 | Msa0424000:intron | 45.0% |
GTGGTGAAAGGTCAAGCTTA+TGG | + | chr3_2:74183889-74183908 | Msa0424000:CDS | 45.0% | |
GCAAAGACCAGTCTTAATCG+AGG | + | chr3_2:74183996-74184015 | Msa0424000:CDS | 45.0% | |
TTGAATCGTCGGATGTAGAG+TGG | - | chr3_2:74184139-74184158 | None:intergenic | 45.0% | |
GTGGAGTGACAAGGATGAAT+TGG | + | chr3_2:74184250-74184269 | Msa0424000:CDS | 45.0% | |
TGGAGCTTAGAAGCAGTGTA+AGG | + | chr3_2:74184270-74184289 | Msa0424000:CDS | 45.0% | |
TAGAAGCAGTGTAAGGAAGC+AGG | + | chr3_2:74184277-74184296 | Msa0424000:CDS | 45.0% | |
GTAAACATGTGCTCAAGTGG+AGG | - | chr3_2:74184449-74184468 | None:intergenic | 45.0% | |
!!! | TTTTTATTGATTTATAATAA+TGG | + | chr3_2:74181188-74181207 | Msa0424000:intron | 5.0% |
TTGTCTCGACAGCAAAGACG+TGG | - | chr3_2:74178992-74179011 | None:intergenic | 50.0% | |
! | CCAGCTTACTTTGAAGGTGC+TGG | - | chr3_2:74179207-74179226 | None:intergenic | 50.0% |
CCAGCACCTTCAAAGTAAGC+TGG | + | chr3_2:74179204-74179223 | Msa0424000:CDS | 50.0% | |
AGGTGTGAGAAGAAGAGTGG+TGG | - | chr3_2:74179267-74179286 | None:intergenic | 50.0% | |
CAACTGTGCATGTGCTTTGG+TGG | - | chr3_2:74179335-74179354 | None:intergenic | 50.0% | |
CACCAAAGCACATGCACAGT+TGG | + | chr3_2:74179333-74179352 | Msa0424000:CDS | 50.0% | |
TTCACATATTCCCTCCGTCC+CGG | + | chr3_2:74179512-74179531 | Msa0424000:intron | 50.0% | |
ATGGGTCAGATATTCCGGGA+CGG | - | chr3_2:74179529-74179548 | None:intergenic | 50.0% | |
GTTCAAACCCCGATTCTCAG+AGG | - | chr3_2:74179813-74179832 | None:intergenic | 50.0% | |
GAGAATCGGGGTTTGAACCT+CGG | + | chr3_2:74179815-74179834 | Msa0424000:intron | 50.0% | |
TCTTGCTAGTGGCTAGAGAC+TGG | - | chr3_2:74179845-74179864 | None:intergenic | 50.0% | |
TCACAAAGTCGAGGCAACCT+CGG | + | chr3_2:74181698-74181717 | Msa0424000:intron | 50.0% | |
TTGAACCAACCTTCATGCCG+AGG | - | chr3_2:74181718-74181737 | None:intergenic | 50.0% | |
CAATGAACTGAAGCCGTGAG+AGG | - | chr3_2:74182340-74182359 | None:intergenic | 50.0% | |
GTGAATCCAACTTTCCCTCC+AGG | - | chr3_2:74182368-74182387 | None:intergenic | 50.0% | |
TCATCGAGGACTCGATAGCA+AGG | - | chr3_2:74182434-74182453 | None:intergenic | 50.0% | |
TTGGCTCACCATCTTCATCG+AGG | - | chr3_2:74182448-74182467 | None:intergenic | 50.0% | |
TTCTACGAGGTACAGAGGCA+AGG | + | chr3_2:74182635-74182654 | Msa0424000:CDS | 50.0% | |
TCCCATTGAGGTGAGGTAGA+AGG | - | chr3_2:74182669-74182688 | None:intergenic | 50.0% | |
CTTCTTCTCCCATTGAGGTG+AGG | - | chr3_2:74182676-74182695 | None:intergenic | 50.0% | |
ATAGCAGAACTCCAGGCTCA+CGG | - | chr3_2:74183137-74183156 | None:intergenic | 50.0% | |
CAGGCTCTCAGTTATAGGGT+AGG | + | chr3_2:74184110-74184129 | Msa0424000:intron | 50.0% | |
GGGTTGAAAGGAATGGTTGG+TGG | + | chr3_2:74184231-74184250 | Msa0424000:CDS | 50.0% | |
!! | GAATGGTTGGTGGAGTGACA+AGG | + | chr3_2:74184241-74184260 | Msa0424000:CDS | 50.0% |
GTCAGATATTCCGGGACGGA+GGG | - | chr3_2:74179525-74179544 | None:intergenic | 55.0% | |
CTGGCTCAGATATTCCGGGA+CGG | + | chr3_2:74179720-74179739 | Msa0424000:intron | 55.0% | |
CTCAGATATTCCGGGACGGA+GGG | + | chr3_2:74179724-74179743 | Msa0424000:intron | 55.0% | |
TTGCGGCAGAAGCAAACCTG+AGG | - | chr3_2:74182749-74182768 | None:intergenic | 55.0% | |
! | TCAGGTTTGCTTCTGCCGCA+AGG | + | chr3_2:74182748-74182767 | Msa0424000:intron | 55.0% |
! | ATTGCAGGGTGGTGCCAACT+TGG | - | chr3_2:74183015-74183034 | None:intergenic | 55.0% |
GTGAGCCTGGAGTTCTGCTA+TGG | + | chr3_2:74183136-74183155 | Msa0424000:CDS | 55.0% | |
TAAGCAGCGCCTACAGCTTG+AGG | - | chr3_2:74183406-74183425 | None:intergenic | 55.0% | |
!! | TGGGGATGGAGGTACTAGTG+AGG | + | chr3_2:74183471-74183490 | Msa0424000:CDS | 55.0% |
GACGTGGAGAGCTTGTGTCG+TGG | - | chr3_2:74178976-74178995 | None:intergenic | 60.0% | |
GGTCAGATATTCCGGGACGG+AGG | - | chr3_2:74179526-74179545 | None:intergenic | 60.0% | |
GCTCAGATATTCCGGGACGG+AGG | + | chr3_2:74179723-74179742 | Msa0424000:intron | 60.0% | |
GGCTAGAGACTGGATGTCCG+AGG | - | chr3_2:74179835-74179854 | None:intergenic | 60.0% | |
TCGAGGCAACCTCGGCATGA+AGG | + | chr3_2:74181706-74181725 | Msa0424000:intron | 60.0% | |
GGCAACCTCGGCATGAAGGT+TGG | + | chr3_2:74181710-74181729 | Msa0424000:intron | 60.0% | |
GACTGCTAGTACCGTGAGCC+TGG | + | chr3_2:74183123-74183142 | Msa0424000:intron | 60.0% | |
CCTGGAGTTCTGCTATGGCG+CGG | + | chr3_2:74183141-74183160 | Msa0424000:CDS | 60.0% | |
CCGCGCCATAGCAGAACTCC+AGG | - | chr3_2:74183144-74183163 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 74178973 | 74184749 | 74178973 | ID=Msa0424000;Name=Msa0424000 |
chr3_2 | mRNA | 74178973 | 74184749 | 74178973 | ID=Msa0424000-mRNA-1;Parent=Msa0424000;Name=Msa0424000-mRNA-1;_AED=0.12;_eAED=0.12;_QI=184|1|1|1|1|1|9|175|471 |
chr3_2 | exon | 74178973 | 74179387 | 74178973 | ID=Msa0424000-mRNA-1:exon:18654;Parent=Msa0424000-mRNA-1 |
chr3_2 | exon | 74182353 | 74182490 | 74182353 | ID=Msa0424000-mRNA-1:exon:18655;Parent=Msa0424000-mRNA-1 |
chr3_2 | exon | 74182569 | 74182751 | 74182569 | ID=Msa0424000-mRNA-1:exon:18656;Parent=Msa0424000-mRNA-1 |
chr3_2 | exon | 74183132 | 74183289 | 74183132 | ID=Msa0424000-mRNA-1:exon:18657;Parent=Msa0424000-mRNA-1 |
chr3_2 | exon | 74183393 | 74183492 | 74183393 | ID=Msa0424000-mRNA-1:exon:18658;Parent=Msa0424000-mRNA-1 |
chr3_2 | exon | 74183591 | 74183702 | 74183591 | ID=Msa0424000-mRNA-1:exon:18659;Parent=Msa0424000-mRNA-1 |
chr3_2 | exon | 74183878 | 74184017 | 74183878 | ID=Msa0424000-mRNA-1:exon:18660;Parent=Msa0424000-mRNA-1 |
chr3_2 | exon | 74184113 | 74184298 | 74184113 | ID=Msa0424000-mRNA-1:exon:18661;Parent=Msa0424000-mRNA-1 |
chr3_2 | exon | 74184407 | 74184749 | 74184407 | ID=Msa0424000-mRNA-1:exon:18662;Parent=Msa0424000-mRNA-1 |
chr3_2 | five_prime_UTR | 74178973 | 74179156 | 74178973 | ID=Msa0424000-mRNA-1:five_prime_utr;Parent=Msa0424000-mRNA-1 |
chr3_2 | CDS | 74179157 | 74179387 | 74179157 | ID=Msa0424000-mRNA-1:cds;Parent=Msa0424000-mRNA-1 |
chr3_2 | CDS | 74182353 | 74182490 | 74182353 | ID=Msa0424000-mRNA-1:cds;Parent=Msa0424000-mRNA-1 |
chr3_2 | CDS | 74182569 | 74182751 | 74182569 | ID=Msa0424000-mRNA-1:cds;Parent=Msa0424000-mRNA-1 |
chr3_2 | CDS | 74183132 | 74183289 | 74183132 | ID=Msa0424000-mRNA-1:cds;Parent=Msa0424000-mRNA-1 |
chr3_2 | CDS | 74183393 | 74183492 | 74183393 | ID=Msa0424000-mRNA-1:cds;Parent=Msa0424000-mRNA-1 |
chr3_2 | CDS | 74183591 | 74183702 | 74183591 | ID=Msa0424000-mRNA-1:cds;Parent=Msa0424000-mRNA-1 |
chr3_2 | CDS | 74183878 | 74184017 | 74183878 | ID=Msa0424000-mRNA-1:cds;Parent=Msa0424000-mRNA-1 |
chr3_2 | CDS | 74184113 | 74184298 | 74184113 | ID=Msa0424000-mRNA-1:cds;Parent=Msa0424000-mRNA-1 |
chr3_2 | CDS | 74184407 | 74184574 | 74184407 | ID=Msa0424000-mRNA-1:cds;Parent=Msa0424000-mRNA-1 |
chr3_2 | three_prime_UTR | 74184575 | 74184749 | 74184575 | ID=Msa0424000-mRNA-1:three_prime_utr;Parent=Msa0424000-mRNA-1 |
Gene Sequence |
Protein sequence |