AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0424000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0424000 MtrunA17_Chr3g0125611 95.789 475 9 4 1 471 1 468 0.0 934
Msa0424000 MtrunA17_Chr3g0130311 69.949 396 119 0 76 471 54 449 0.0 619
Msa0424000 MtrunA17_Chr8g0371741 64.516 155 32 2 309 463 58 189 2.26e-52 175
Msa0424000 MtrunA17_Chr8g0364201 28.923 325 221 4 122 442 58 376 3.76e-40 149
Msa0424000 MtrunA17_Chr5g0414991 29.643 280 194 2 163 442 100 376 1.88e-37 141
Msa0424000 MtrunA17_Chr8g0345911 26.567 335 232 4 116 438 69 401 7.44e-33 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0424000 AT1G21400.1 66.453 468 151 4 3 466 2 467 0.0 653
Msa0424000 AT1G21400.5 66.453 468 151 4 3 466 54 519 0.0 652
Msa0424000 AT1G21400.3 74.485 388 99 0 79 466 5 392 0.0 637
Msa0424000 AT5G09300.1 70.050 404 121 0 68 471 69 472 0.0 630
Msa0424000 AT5G09300.2 71.139 395 114 0 77 471 7 401 0.0 627
Msa0424000 AT1G21400.4 74.133 375 97 0 92 466 1 375 0.0 612
Msa0424000 AT1G21400.2 74.133 375 97 0 92 466 1 375 0.0 612
Msa0424000 AT5G09300.3 73.868 287 75 0 68 354 69 355 1.14e-164 469
Msa0424000 AT1G21400.6 64.309 311 93 5 8 308 59 361 4.28e-141 409
Msa0424000 AT5G09300.4 71.488 242 69 0 68 309 69 310 4.30e-133 388
Msa0424000 AT5G34780.1 74.882 211 53 0 255 465 26 236 5.51e-106 320
Msa0424000 AT1G59900.2 27.692 325 225 4 122 442 52 370 8.33e-39 145
Msa0424000 AT1G59900.1 27.692 325 225 4 122 442 52 370 9.84e-39 145
Msa0424000 AT1G24180.1 25.846 325 231 4 122 442 56 374 1.12e-35 137
Msa0424000 AT1G01090.1 25.994 327 227 5 124 438 79 402 1.90e-29 120

Find 116 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGAAACACAAATGATTT+TGG 0.179644 3_2:+74183195 Msa0424000:CDS
CGCTGCTTATTCGCTTAAAA+TGG 0.185602 3_2:+74183417 Msa0424000:CDS
CCTATAATAAAATGCTATAA+TGG 0.260008 3_2:-74179094 None:intergenic
GTACAAATGGTTATTTGAAT+TGG 0.266050 3_2:-74184581 None:intergenic
CTTTGAAGGTGCTGGTGATT+AGG 0.280461 3_2:-74179196 None:intergenic
ATGTTCAGGCTCTCAGTTAT+AGG 0.280560 3_2:+74184105 Msa0424000:intron
CAATTTGCTCATCAATGCTT+TGG 0.310829 3_2:+74183177 Msa0424000:CDS
CCTGGACCTTCTCAATAATA+AGG 0.321938 3_2:-74179164 None:intergenic
GTATCTATGTCTTACGCAAT+AGG 0.330119 3_2:-74183282 None:intergenic
AACATCAGAAGGGTAATCTT+TGG 0.337903 3_2:-74184543 None:intergenic
CTCATCAATTGGTCTGTACT+TGG 0.357544 3_2:-74184159 None:intergenic
TCAGAATGTAAAATAAAGTT+GGG 0.378426 3_2:+74184616 Msa0424000:three_prime_UTR
CTATAATAAAATGCTATAAT+GGG 0.383565 3_2:-74179093 None:intergenic
TATCTATGTCTTACGCAATA+GGG 0.387172 3_2:-74183281 None:intergenic
CAATTGATGAGATTGAATAT+TGG 0.399761 3_2:+74184171 Msa0424000:CDS
TCCTTCTACCTCACCTCAAT+GGG 0.406472 3_2:+74182665 Msa0424000:CDS
TGATGATATTATCTTGCCTC+AGG 0.408765 3_2:+74182730 Msa0424000:CDS
GATGGTCACTCTTCAAACTA+TGG 0.409967 3_2:+74182604 Msa0424000:CDS
AGCTAGCCAGCTTACTTTGA+AGG 0.410513 3_2:-74179210 None:intergenic
TCCCATTGAGGTGAGGTAGA+AGG 0.412039 3_2:-74182666 None:intergenic
ACATGATTGGTGTGTTTCAT+TGG 0.420905 3_2:-74182464 None:intergenic
CAATATTCAATCTCATCAAT+TGG 0.421389 3_2:-74184170 None:intergenic
GTCAGAATGTAAAATAAAGT+TGG 0.424656 3_2:+74184615 Msa0424000:three_prime_UTR
TTCCTTCTACCTCACCTCAA+TGG 0.425377 3_2:+74182664 Msa0424000:CDS
ACATCAGAAGGGTAATCTTT+GGG 0.425630 3_2:-74184542 None:intergenic
GTGGAGTGACAAGGATGAAT+TGG 0.426460 3_2:+74184250 Msa0424000:CDS
CCAGCTTACTTTGAAGGTGC+TGG 0.439279 3_2:-74179204 None:intergenic
GAAACACACCAATCATGTTC+AGG 0.441234 3_2:+74182469 Msa0424000:CDS
TGTTCAGGCTCTCAGTTATA+GGG 0.444904 3_2:+74184106 Msa0424000:intron
CTTCGAAATTGTTCTTCGAC+AGG 0.445186 3_2:-74183681 None:intergenic
AAGGTCAAGCTTATGGAATA+TGG 0.446678 3_2:+74183896 Msa0424000:CDS
TGTGACTGAATATAGATAGA+TGG 0.446701 3_2:+74179138 Msa0424000:exon
ATATGGAGTATCCGAGTAGA+TGG 0.447516 3_2:+74183913 Msa0424000:CDS
GCTAGCTTGTTACTAGGATC+AGG 0.454907 3_2:+74179226 Msa0424000:CDS
TGTTCAGGTTAGCAAAGAAA+TGG 0.458006 3_2:+74182562 Msa0424000:intron
GTTCTCTTTCTTGTTCCTCA+AGG 0.461180 3_2:-74184496 None:intergenic
GACTGCTAGTACCGTGAGCC+TGG 0.461768 3_2:+74183123 Msa0424000:intron
AGTATGAACTGCACTATAAA+CGG 0.462524 3_2:-74183950 None:intergenic
GGGAAAATTTATGATGGGAT+GGG 0.465427 3_2:-74179073 None:intergenic
ATCCAACTGTGCATGTGCTT+TGG 0.466487 3_2:-74179335 None:intergenic
AACTGCTTCTTCTCCCATTG+AGG 0.472929 3_2:-74182678 None:intergenic
CAACTGTGCATGTGCTTTGG+TGG 0.474846 3_2:-74179332 None:intergenic
TTATCTGTCGTAACAATGGA+TGG 0.475021 3_2:+74183646 Msa0424000:CDS
GCTTATTCGCTTAAAATGGA+TGG 0.487975 3_2:+74183421 Msa0424000:CDS
GTGGTGAAAGGTCAAGCTTA+TGG 0.488654 3_2:+74183889 Msa0424000:CDS
AGACAAATGCCTATACACTA+TGG 0.491107 3_2:+74183225 Msa0424000:CDS
TATAATGGGAAAATTTATGA+TGG 0.494327 3_2:-74179079 None:intergenic
TGGAGCTTAGAAGCAGTGTA+AGG 0.501197 3_2:+74184270 Msa0424000:CDS
TGTCATCCACGATGATGATC+AGG 0.501340 3_2:+74179366 Msa0424000:CDS
ATATTCAGTCACAATTTCAC+AGG 0.506274 3_2:-74179128 None:intergenic
TGAGATTGAATATTGGAAGA+TGG 0.508510 3_2:+74184178 Msa0424000:CDS
TGGGAAAATTTATGATGGGA+TGG 0.514861 3_2:-74179074 None:intergenic
ACTGTGAATTTGAGTACAAA+TGG 0.515898 3_2:-74184594 None:intergenic
ATCTACAAAGGAACATCAGA+AGG 0.517136 3_2:-74184554 None:intergenic
TTGTTAGAGCCATAGTGTAT+AGG 0.517990 3_2:-74183234 None:intergenic
GTGAATCCAACTTTCCCTCC+AGG 0.523019 3_2:-74182365 None:intergenic
CCGCGCCATAGCAGAACTCC+AGG 0.523733 3_2:-74183141 None:intergenic
CACCAAAGCACATGCACAGT+TGG 0.527776 3_2:+74179333 Msa0424000:CDS
TAGAAGCAGTGTAAGGAAGC+AGG 0.529470 3_2:+74184277 Msa0424000:CDS
AAGCTGGCTAGCTTGTTACT+AGG 0.530994 3_2:+74179220 Msa0424000:CDS
GGAAAATTTATGATGGGATG+GGG 0.531529 3_2:-74179072 None:intergenic
GTGCTGGTGATTAGGAACTA+AGG 0.533834 3_2:-74179188 None:intergenic
GTGATTAGGAACTAAGGTCC+TGG 0.538397 3_2:-74179182 None:intergenic
ATGACATACCTGAACATGAT+TGG 0.542831 3_2:-74182477 None:intergenic
TCGAAATTGTTCTTCGACAG+GGG 0.543483 3_2:-74183679 None:intergenic
TCTGTACTTGGTTGAATCGT+CGG 0.546416 3_2:-74184147 None:intergenic
CCTTATTATTGAGAAGGTCC+AGG 0.551779 3_2:+74179164 Msa0424000:CDS
GGGTTGAAAGGAATGGTTGG+TGG 0.552659 3_2:+74184231 Msa0424000:CDS
TGGCATCCTTATTATTGAGA+AGG 0.553122 3_2:+74179158 Msa0424000:CDS
GTGAGCCTGGAGTTCTGCTA+TGG 0.557948 3_2:+74183136 Msa0424000:CDS
TATCTGTCGTAACAATGGAT+GGG 0.559058 3_2:+74183647 Msa0424000:CDS
TCAGTAAACATGTGCTCAAG+TGG 0.559177 3_2:-74184449 None:intergenic
TTGGTTAGGTGATGGTATTG+TGG 0.562170 3_2:+74183870 Msa0424000:intron
AATCATACCTCGATTAAGAC+TGG 0.563171 3_2:-74184003 None:intergenic
CCAGCACCTTCAAAGTAAGC+TGG 0.564260 3_2:+74179204 Msa0424000:CDS
TAAGCAGCGCCTACAGCTTG+AGG 0.572650 3_2:-74183403 None:intergenic
TTACGTGATGATGCAACAAA+TGG 0.572708 3_2:-74179304 None:intergenic
TGAATTGGAAATATCTACAA+AGG 0.573033 3_2:-74184566 None:intergenic
CTTCTTCTCCCATTGAGGTG+AGG 0.577078 3_2:-74182673 None:intergenic
GAAAGGTGTGAGAAGAAGAG+TGG 0.579507 3_2:-74179267 None:intergenic
TATCGAGTCCTCGATGAAGA+TGG 0.584034 3_2:+74182437 Msa0424000:CDS
GAAAATTTATGATGGGATGG+GGG 0.587743 3_2:-74179071 None:intergenic
TTCGAAATTGTTCTTCGACA+GGG 0.588433 3_2:-74183680 None:intergenic
CAGAATGTAAAATAAAGTTG+GGG 0.590056 3_2:+74184617 Msa0424000:three_prime_UTR
AATGGGTTGAAAGGAATGGT+TGG 0.592679 3_2:+74184228 Msa0424000:CDS
ATCTATGTCTTACGCAATAG+GGG 0.597213 3_2:-74183280 None:intergenic
TTGTCTCGACAGCAAAGACG+TGG 0.604152 3_2:-74178989 None:intergenic
TCATCGAGGACTCGATAGCA+AGG 0.608678 3_2:-74182431 None:intergenic
GTGCATCATTTCCATCTACT+CGG 0.610489 3_2:-74183924 None:intergenic
CCTGGAGTTCTGCTATGGCG+CGG 0.620040 3_2:+74183141 Msa0424000:CDS
CAAACTTTCATCAAACCTTG+AGG 0.623308 3_2:+74184481 Msa0424000:CDS
TTCTACGAGGTACAGAGGCA+AGG 0.623632 3_2:+74182635 Msa0424000:CDS
ATAATGGGAAAATTTATGAT+GGG 0.623755 3_2:-74179078 None:intergenic
CAGGCTCTCAGTTATAGGGT+AGG 0.626263 3_2:+74184110 Msa0424000:intron
TGGCTGAGAAGAAGATCGAA+AGG 0.629379 3_2:-74179284 None:intergenic
GACGTGGAGAGCTTGTGTCG+TGG 0.630249 3_2:-74178973 None:intergenic
GAATGGTTGGTGGAGTGACA+AGG 0.638989 3_2:+74184241 Msa0424000:CDS
GGTGATGGTATTGTGGTGAA+AGG 0.640292 3_2:+74183877 Msa0424000:intron
ATAGCAGAACTCCAGGCTCA+CGG 0.640845 3_2:-74183134 None:intergenic
TGTGAGGATGTATTCTGAGA+TGG 0.641743 3_2:+74182586 Msa0424000:CDS
ACGAGACTGTGAAGTAATTG+TGG 0.646505 3_2:-74183257 None:intergenic
CTGCAAAATTCATACCAGCA+TGG 0.646981 3_2:-74183599 None:intergenic
GTAAACATGTGCTCAAGTGG+AGG 0.651860 3_2:-74184446 None:intergenic
ACACAACTTCCTCAAGCTGT+AGG 0.653871 3_2:+74183394 Msa0424000:CDS
TGGGGATGGAGGTACTAGTG+AGG 0.654726 3_2:+74183471 Msa0424000:CDS
TCTACAAAGGAACATCAGAA+GGG 0.660510 3_2:-74184553 None:intergenic
AGGTGTGAGAAGAAGAGTGG+TGG 0.664800 3_2:-74179264 None:intergenic
TATTCAGTCACAATTTCACA+GGG 0.667420 3_2:-74179127 None:intergenic
GCATATTCTACGAGGTACAG+AGG 0.676162 3_2:+74182630 Msa0424000:CDS
TTGAATCGTCGGATGTAGAG+TGG 0.676430 3_2:-74184136 None:intergenic
GCAAAGACCAGTCTTAATCG+AGG 0.679916 3_2:+74183996 Msa0424000:CDS
AGAATGTAAAATAAAGTTGG+GGG 0.697292 3_2:+74184618 Msa0424000:three_prime_UTR
TTGGCTCACCATCTTCATCG+AGG 0.713485 3_2:-74182445 None:intergenic
TTAGCAAAGAAATGGCTGTG+AGG 0.717152 3_2:+74182570 Msa0424000:CDS
CATGTACCTGATCATCATCG+TGG 0.766769 3_2:-74179372 None:intergenic
TATGGACAGCATATTCTACG+AGG 0.801534 3_2:+74182622 Msa0424000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATAATTAATTTTTTAA+TGG + chr3_2:74180308-74180327 Msa0424000:intron 0.0%
!! TTATTTAAATTTATATAAAT+TGG + chr3_2:74180995-74181014 Msa0424000:intron 0.0%
!! AAGAAAAATGTATAAATAAA+GGG - chr3_2:74179680-74179699 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr3_2:74179681-74179700 None:intergenic 10.0%
!!! ATTTTGCTAATATAAATTTA+GGG - chr3_2:74180291-74180310 None:intergenic 10.0%
!!! AATTTTGCTAATATAAATTT+AGG - chr3_2:74180292-74180311 None:intergenic 10.0%
!!! TTATTTTTTTCATTTACAAA+AGG + chr3_2:74180486-74180505 Msa0424000:intron 10.0%
!!! TACAGTTTTTAATATTTTTT+TGG + chr3_2:74180541-74180560 Msa0424000:intron 10.0%
!!! AATTTTATTTATGACTAAAT+GGG - chr3_2:74180624-74180643 None:intergenic 10.0%
!!! TAATTTTATTTATGACTAAA+TGG - chr3_2:74180625-74180644 None:intergenic 10.0%
!!! ATTTAAAATTTTAAAACCAT+AGG + chr3_2:74181069-74181088 Msa0424000:intron 10.0%
!!! TTTAAAATTTTAAAACCATA+GGG + chr3_2:74181070-74181089 Msa0424000:intron 10.0%
!!! TTATTAAAATGTTACTTTTA+TGG - chr3_2:74184695-74184714 None:intergenic 10.0%
!! CTATAATAAAATGCTATAAT+GGG - chr3_2:74179096-74179115 None:intergenic 15.0%
!! AAAATATAGTACTTAGTTAA+CGG - chr3_2:74179414-74179433 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG - chr3_2:74179617-74179636 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - chr3_2:74179679-74179698 None:intergenic 15.0%
!! AATTATAAATTAAAATCACG+TGG + chr3_2:74180053-74180072 Msa0424000:intron 15.0%
!! ATTATAAATTAAAATCACGT+GGG + chr3_2:74180054-74180073 Msa0424000:intron 15.0%
!!! ATCTTCTAAAAAAAAAATGA+AGG - chr3_2:74180141-74180160 None:intergenic 15.0%
!!! TTATCTTTTGATTCAATTAA+AGG + chr3_2:74180678-74180697 Msa0424000:intron 15.0%
!!! TATCTTTTGATTCAATTAAA+GGG + chr3_2:74180679-74180698 Msa0424000:intron 15.0%
!!! TTCATGTATTTTATTTTAGT+GGG - chr3_2:74180906-74180925 None:intergenic 15.0%
!!! ATTCATGTATTTTATTTTAG+TGG - chr3_2:74180907-74180926 None:intergenic 15.0%
!!! CAAATATTAGTATTTTTTTG+AGG + chr3_2:74181107-74181126 Msa0424000:intron 15.0%
!!! TTTTTGTGATAAAAAAAGTT+TGG - chr3_2:74181900-74181919 None:intergenic 15.0%
!! TATATTATTATCATTGTCTA+AGG - chr3_2:74181964-74181983 None:intergenic 15.0%
!! ACTGTTAAAAATAAAATACT+TGG + chr3_2:74182137-74182156 Msa0424000:intron 15.0%
!!! ATTAGGTTCTAAAATTATTT+TGG + chr3_2:74182200-74182219 Msa0424000:intron 15.0%
!! AATATAGCAAAATGAAAAAA+GGG - chr3_2:74182811-74182830 None:intergenic 15.0%
!! TAATATAGCAAAATGAAAAA+AGG - chr3_2:74182812-74182831 None:intergenic 15.0%
!!! CTGATATTTGAAATATTTTA+GGG + chr3_2:74183570-74183589 Msa0424000:intron 15.0%
!! TGAGATAAGAAGAAAAATAA+TGG + chr3_2:74179024-74179043 Msa0424000:five_prime_UTR 20.0%
!!! ATAATGGGAAAATTTATGAT+GGG - chr3_2:74179081-74179100 None:intergenic 20.0%
!!! TATAATGGGAAAATTTATGA+TGG - chr3_2:74179082-74179101 None:intergenic 20.0%
!! CCTATAATAAAATGCTATAA+TGG - chr3_2:74179097-74179116 None:intergenic 20.0%
!!! CCATTATAGCATTTTATTAT+AGG + chr3_2:74179094-74179113 Msa0424000:five_prime_UTR 20.0%
!!! GACACTTTTTTTTAGTAAAT+GGG - chr3_2:74179547-74179566 None:intergenic 20.0%
!! TTATAAATTAAAATCACGTG+GGG + chr3_2:74180055-74180074 Msa0424000:intron 20.0%
!! ACTAATATGACATGAAAAAA+TGG + chr3_2:74180418-74180437 Msa0424000:intron 20.0%
!!! TCATGTATTTTATTTTAGTG+GGG - chr3_2:74180905-74180924 None:intergenic 20.0%
!!! GTTTTTTTAAATAATCCCTA+TGG - chr3_2:74181088-74181107 None:intergenic 20.0%
!!! ATATTAGTATTTTTTTGAGG+TGG + chr3_2:74181110-74181129 Msa0424000:intron 20.0%
!!! AACTTTTATGTTTTTTTGGA+TGG - chr3_2:74181273-74181292 None:intergenic 20.0%
!! TTTGATTAGATGAGATTAAT+TGG - chr3_2:74181298-74181317 None:intergenic 20.0%
!!! TAGTTTTATTTTGTATGTGT+TGG - chr3_2:74181592-74181611 None:intergenic 20.0%
!! TTACAAATTATCCACTAAAA+AGG - chr3_2:74181804-74181823 None:intergenic 20.0%
!! AAATAAAATACTTGGAACAA+AGG + chr3_2:74182145-74182164 Msa0424000:intron 20.0%
!! ATGAATAATGCAACATTTAT+GGG - chr3_2:74182295-74182314 None:intergenic 20.0%
!! AATGAATAATGCAACATTTA+TGG - chr3_2:74182296-74182315 None:intergenic 20.0%
!! TGGATCTATAATAACAAAAT+TGG + chr3_2:74182847-74182866 Msa0424000:intron 20.0%
!! ATATCATAAGTGTCTTAAAT+TGG - chr3_2:74182900-74182919 None:intergenic 20.0%
!!! TTGAAATTTCATTAGTTTCA+TGG + chr3_2:74182988-74183007 Msa0424000:intron 20.0%
!! TATTAGTTAAGAAAATTGCA+GGG - chr3_2:74183029-74183048 None:intergenic 20.0%
!! TTATTAGTTAAGAAAATTGC+AGG - chr3_2:74183030-74183049 None:intergenic 20.0%
!! ATATAAGTGTTCAATAAAAC+AGG - chr3_2:74183065-74183084 None:intergenic 20.0%
!! TTATAACATGTTACAGTATA+TGG - chr3_2:74183307-74183326 None:intergenic 20.0%
!!! GCTGATATTTGAAATATTTT+AGG + chr3_2:74183569-74183588 Msa0424000:intron 20.0%
!!! TTCTAGTTTTTCTAATATCT+CGG - chr3_2:74183833-74183852 None:intergenic 20.0%
!! TGTGAATAGATTCAAAAAAT+GGG + chr3_2:74184211-74184230 Msa0424000:CDS 20.0%
!! TATTTAGTCCATATAAATCT+TGG + chr3_2:74184326-74184345 Msa0424000:intron 20.0%
!! AAAATGTCAAAAATCAAAAC+AGG - chr3_2:74184366-74184385 None:intergenic 20.0%
!! TCAGAATGTAAAATAAAGTT+GGG + chr3_2:74184616-74184635 Msa0424000:three_prime_UTR 20.0%
! TTAGAACTAAAGAAACTGAA+CGG - chr3_2:74179450-74179469 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGTAAA+TGG - chr3_2:74179548-74179567 None:intergenic 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG - chr3_2:74179569-74179588 None:intergenic 25.0%
!! TTGAAATGACTCAGTTATTT+TGG - chr3_2:74179570-74179589 None:intergenic 25.0%
! GAATAAAATGAGATAAGTTC+AGG - chr3_2:74179789-74179808 None:intergenic 25.0%
! ATGAAGTGAAATACAAAATG+TGG + chr3_2:74179869-74179888 Msa0424000:intron 25.0%
! AAATTATTACAAGAATCACG+TGG + chr3_2:74180098-74180117 Msa0424000:intron 25.0%
! AATTATTACAAGAATCACGT+GGG + chr3_2:74180099-74180118 Msa0424000:intron 25.0%
!! AGTGATTTTTGCTAAAGATA+TGG + chr3_2:74180735-74180754 Msa0424000:intron 25.0%
!!! AAGATTTAAGTTGAGGAAAT+TGG - chr3_2:74180793-74180812 None:intergenic 25.0%
!!! ATGTATTTTATTTTAGTGGG+GGG - chr3_2:74180903-74180922 None:intergenic 25.0%
!!! CATGTATTTTATTTTAGTGG+GGG - chr3_2:74180904-74180923 None:intergenic 25.0%
!!! GGTGAACTTTTATGTTTTTT+TGG - chr3_2:74181277-74181296 None:intergenic 25.0%
! TTACAAACCATTCATAGAAT+AGG + chr3_2:74181331-74181350 Msa0424000:intron 25.0%
! ATAAAGTTGACTAAGTTGTT+GGG - chr3_2:74181456-74181475 None:intergenic 25.0%
! TATAAAGTTGACTAAGTTGT+TGG - chr3_2:74181457-74181476 None:intergenic 25.0%
!!! AATTTTAACAAAATCGCTGT+AGG - chr3_2:74181488-74181507 None:intergenic 25.0%
!!! ATAATCACCTTTTTTTAGTG+TGG + chr3_2:74181517-74181536 Msa0424000:intron 25.0%
! ATCAAATCCACACTAAAAAA+AGG - chr3_2:74181527-74181546 None:intergenic 25.0%
! TAAAAAAAGTTTGGATGACT+TGG - chr3_2:74181891-74181910 None:intergenic 25.0%
! TTATCACAAAAATAGAGTCT+AGG + chr3_2:74181908-74181927 Msa0424000:intron 25.0%
!! ATAAATTGGTCTATTATTGG+AGG - chr3_2:74181937-74181956 None:intergenic 25.0%
!! GTGATAAATTGGTCTATTAT+TGG - chr3_2:74181940-74181959 None:intergenic 25.0%
! TTCTTTAGTTAAAACACAAC+TGG + chr3_2:74182002-74182021 Msa0424000:intron 25.0%
!! TTGATCTCATACACATATTT+TGG - chr3_2:74182176-74182195 None:intergenic 25.0%
! CAACATTTATGGGAATAATT+TGG - chr3_2:74182285-74182304 None:intergenic 25.0%
! ATCATATTGTACTATGTAGT+CGG + chr3_2:74182512-74182531 Msa0424000:intron 25.0%
!!! TTCTTCAACGATATTTTAAG+AGG - chr3_2:74182539-74182558 None:intergenic 25.0%
!! TAAATTGGTGATTCACATTT+AGG - chr3_2:74182885-74182904 None:intergenic 25.0%
!! TTTGGAAACACAAATGATTT+TGG + chr3_2:74183195-74183214 Msa0424000:CDS 25.0%
!!! AACACAAATGATTTTGGTAA+AGG + chr3_2:74183201-74183220 Msa0424000:CDS 25.0%
! CTGAATAAGTTAATGTTGTT+CGG + chr3_2:74183358-74183377 Msa0424000:intron 25.0%
! TATATGAACTATCTCTCTTA+AGG + chr3_2:74183508-74183527 Msa0424000:intron 25.0%
! TATTTCAAATATCAGCAATG+AGG - chr3_2:74183565-74183584 None:intergenic 25.0%
! TTACGACAGATAAAAATAAC+AGG - chr3_2:74183639-74183658 None:intergenic 25.0%
!! ATTTTTATCTGTCGTAACAA+TGG + chr3_2:74183642-74183661 Msa0424000:CDS 25.0%
!! GTTTGAGACTAAAAATAAGT+AGG - chr3_2:74183723-74183742 None:intergenic 25.0%
! CATAAAGTTGAACATGAATT+AGG - chr3_2:74183795-74183814 None:intergenic 25.0%
! AAACTAGAAACTTACATGTT+TGG + chr3_2:74183844-74183863 Msa0424000:intron 25.0%
! CAATATTCAATCTCATCAAT+TGG - chr3_2:74184173-74184192 None:intergenic 25.0%
! CAATTGATGAGATTGAATAT+TGG + chr3_2:74184171-74184190 Msa0424000:CDS 25.0%
!!! CATTTTTTGAATCTATTCAC+AGG - chr3_2:74184212-74184231 None:intergenic 25.0%
! CTGTGAATAGATTCAAAAAA+TGG + chr3_2:74184210-74184229 Msa0424000:CDS 25.0%
! TGAATTGGAAATATCTACAA+AGG - chr3_2:74184569-74184588 None:intergenic 25.0%
! GTACAAATGGTTATTTGAAT+TGG - chr3_2:74184584-74184603 None:intergenic 25.0%
! GTCAGAATGTAAAATAAAGT+TGG + chr3_2:74184615-74184634 Msa0424000:three_prime_UTR 25.0%
! CAGAATGTAAAATAAAGTTG+GGG + chr3_2:74184617-74184636 Msa0424000:three_prime_UTR 25.0%
! AGAATGTAAAATAAAGTTGG+GGG + chr3_2:74184618-74184637 Msa0424000:three_prime_UTR 25.0%
TATTCAGTCACAATTTCACA+GGG - chr3_2:74179130-74179149 None:intergenic 30.0%
ATATTCAGTCACAATTTCAC+AGG - chr3_2:74179131-74179150 None:intergenic 30.0%
TGTGACTGAATATAGATAGA+TGG + chr3_2:74179138-74179157 Msa0424000:exon 30.0%
ATGTATAAATAAAGGGGAAG+TGG - chr3_2:74179673-74179692 None:intergenic 30.0%
ATCTGTGTGAAAAATCAAAC+TGG + chr3_2:74179701-74179720 Msa0424000:intron 30.0%
TCTCATCAATAGAATTCAGA+TGG - chr3_2:74179763-74179782 None:intergenic 30.0%
ATCAATTAGAGAAAACACGT+GGG - chr3_2:74180015-74180034 None:intergenic 30.0%
AATCAATTAGAGAAAACACG+TGG - chr3_2:74180016-74180035 None:intergenic 30.0%
ATTATTACAAGAATCACGTG+GGG + chr3_2:74180100-74180119 Msa0424000:intron 30.0%
!!! CGATGACATTTTTAGTAGAA+AGG + chr3_2:74180395-74180414 Msa0424000:intron 30.0%
ATGGGATATTTAGTGATTGT+AGG - chr3_2:74180606-74180625 None:intergenic 30.0%
TGCTCTAATCCATATAATGA+TGG + chr3_2:74180762-74180781 Msa0424000:intron 30.0%
GCTCTAATCCATATAATGAT+GGG + chr3_2:74180763-74180782 Msa0424000:intron 30.0%
!! TGTACCGTTAGTAATTTGTT+AGG + chr3_2:74181139-74181158 Msa0424000:intron 30.0%
!! GTACCGTTAGTAATTTGTTA+GGG + chr3_2:74181140-74181159 Msa0424000:intron 30.0%
!! TACCGTTAGTAATTTGTTAG+GGG + chr3_2:74181141-74181160 Msa0424000:intron 30.0%
TACCCCTAACAAATTACTAA+CGG - chr3_2:74181146-74181165 None:intergenic 30.0%
TATACTAAGTCCCAAAATGT+GGG - chr3_2:74181237-74181256 None:intergenic 30.0%
TTATACTAAGTCCCAAAATG+TGG - chr3_2:74181238-74181257 None:intergenic 30.0%
!!! ATTTTGGGACTTAGTATAAG+TGG + chr3_2:74181239-74181258 Msa0424000:intron 30.0%
TAAGTTGTTGGGGAATAAAA+AGG - chr3_2:74181445-74181464 None:intergenic 30.0%
TAAAGTTGACTAAGTTGTTG+GGG - chr3_2:74181455-74181474 None:intergenic 30.0%
TTGTCTAAGGAGTGATAAAT+TGG - chr3_2:74181951-74181970 None:intergenic 30.0%
TGTATGAGATCAACAGAATT+AGG + chr3_2:74182183-74182202 Msa0424000:intron 30.0%
TGAAATCCCTAAAATAAAGC+AGG + chr3_2:74182226-74182245 Msa0424000:intron 30.0%
GAAATCCCTAAAATAAAGCA+GGG + chr3_2:74182227-74182246 Msa0424000:intron 30.0%
AGGGAGAATTAAATAATGCT+GGG - chr3_2:74182320-74182339 None:intergenic 30.0%
TTATTTAATTCTCCCTCTCA+CGG + chr3_2:74182324-74182343 Msa0424000:intron 30.0%
ATCGTTGAAGAAATATGTTC+AGG + chr3_2:74182547-74182566 Msa0424000:intron 30.0%
! GAATTTGAAAAGAAGCATGA+GGG - chr3_2:74182784-74182803 None:intergenic 30.0%
! TGAATTTGAAAAGAAGCATG+AGG - chr3_2:74182785-74182804 None:intergenic 30.0%
TATTACACTTTCTGCTATTG+TGG + chr3_2:74182827-74182846 Msa0424000:intron 30.0%
TATCTATGTCTTACGCAATA+GGG - chr3_2:74183284-74183303 None:intergenic 30.0%
! TATGAATTTTGCAGCAGTAA+TGG + chr3_2:74183608-74183627 Msa0424000:CDS 30.0%
!! AAACTTACATGTTTGGTGTT+TGG + chr3_2:74183851-74183870 Msa0424000:intron 30.0%
AGTATGAACTGCACTATAAA+CGG - chr3_2:74183953-74183972 None:intergenic 30.0%
! TCTTAGCTTGACGTAAAATT+AGG - chr3_2:74184039-74184058 None:intergenic 30.0%
! ATTTTCACTAACTGATCTCA+TGG + chr3_2:74184076-74184095 Msa0424000:intron 30.0%
TGAGATTGAATATTGGAAGA+TGG + chr3_2:74184178-74184197 Msa0424000:CDS 30.0%
!! GATTCAAAAAATGGGTTGAA+AGG + chr3_2:74184219-74184238 Msa0424000:CDS 30.0%
!! AAAAAATGGGTTGAAAGGAA+TGG + chr3_2:74184224-74184243 Msa0424000:CDS 30.0%
CATGCATACCAAGATTTATA+TGG - chr3_2:74184337-74184356 None:intergenic 30.0%
TGTCAAAAATCAAAACAGGT+TGG - chr3_2:74184362-74184381 None:intergenic 30.0%
ACTGTGAATTTGAGTACAAA+TGG - chr3_2:74184597-74184616 None:intergenic 30.0%
! GAAAATTTATGATGGGATGG+GGG - chr3_2:74179074-74179093 None:intergenic 35.0%
! GGAAAATTTATGATGGGATG+GGG - chr3_2:74179075-74179094 None:intergenic 35.0%
! GGGAAAATTTATGATGGGAT+GGG - chr3_2:74179076-74179095 None:intergenic 35.0%
! TGGGAAAATTTATGATGGGA+TGG - chr3_2:74179077-74179096 None:intergenic 35.0%
TGGCATCCTTATTATTGAGA+AGG + chr3_2:74179158-74179177 Msa0424000:CDS 35.0%
! TTACGTGATGATGCAACAAA+TGG - chr3_2:74179307-74179326 None:intergenic 35.0%
TATGCAATTCTTCACTCACT+AGG - chr3_2:74179477-74179496 None:intergenic 35.0%
AGTAAATGGGTCAGATATTC+CGG - chr3_2:74179534-74179553 None:intergenic 35.0%
!! TTTTATTCGCCTCTGAGAAT+CGG + chr3_2:74179801-74179820 Msa0424000:intron 35.0%
! ACTTCATCTTTTCTTGCTAG+TGG - chr3_2:74179856-74179875 None:intergenic 35.0%
GTGAAATACAAAATGTGGAG+TGG + chr3_2:74179874-74179893 Msa0424000:intron 35.0%
TGTGGAGTGGAGTAAAAATT+AGG + chr3_2:74179887-74179906 Msa0424000:intron 35.0%
GTGGAGTGGAGTAAAAATTA+GGG + chr3_2:74179888-74179907 Msa0424000:intron 35.0%
TTGGAATGCCCATCATTATA+TGG - chr3_2:74180774-74180793 None:intergenic 35.0%
!! TCGTTCGAAGATTTAAGTTG+AGG - chr3_2:74180800-74180819 None:intergenic 35.0%
! TAGTACTACACCCACATTTT+GGG + chr3_2:74181224-74181243 Msa0424000:intron 35.0%
AACCATTCATAGAATAGGCA+CGG + chr3_2:74181336-74181355 Msa0424000:intron 35.0%
CTTGTGGAAAAACAATCTTG+TGG - chr3_2:74181363-74181382 None:intergenic 35.0%
AACAAAATCGCTGTAGGTAT+GGG - chr3_2:74181482-74181501 None:intergenic 35.0%
TAACAAAATCGCTGTAGGTA+TGG - chr3_2:74181483-74181502 None:intergenic 35.0%
! ATTTTGTATGTGTTGGACAG+TGG - chr3_2:74181585-74181604 None:intergenic 35.0%
! GAGTTTGAAGACCTTTTTAG+TGG + chr3_2:74181790-74181809 Msa0424000:intron 35.0%
TTGGTCTGACCATAAAGATT+AGG + chr3_2:74181857-74181876 Msa0424000:intron 35.0%
TGGTCTGACCATAAAGATTA+GGG + chr3_2:74181858-74181877 Msa0424000:intron 35.0%
GATTCCATCCCTAATCTTTA+TGG - chr3_2:74181869-74181888 None:intergenic 35.0%
GGGAGAATTAAATAATGCTG+GGG - chr3_2:74182319-74182338 None:intergenic 35.0%
GAGGGAGAATTAAATAATGC+TGG - chr3_2:74182321-74182340 None:intergenic 35.0%
!!! CTTCAGTTCATTGATTTTCC+TGG + chr3_2:74182347-74182366 Msa0424000:intron 35.0%
!!! AGTTCATTGATTTTCCTGGA+GGG + chr3_2:74182351-74182370 Msa0424000:intron 35.0%
ACATGATTGGTGTGTTTCAT+TGG - chr3_2:74182467-74182486 None:intergenic 35.0%
ATGACATACCTGAACATGAT+TGG - chr3_2:74182480-74182499 None:intergenic 35.0%
! TGTTCAGGTTAGCAAAGAAA+TGG + chr3_2:74182562-74182581 Msa0424000:intron 35.0%
TGATGATATTATCTTGCCTC+AGG + chr3_2:74182730-74182749 Msa0424000:CDS 35.0%
! ATTAGTTTCATGGACCAAGT+TGG + chr3_2:74182998-74183017 Msa0424000:intron 35.0%
TAGTTAAGAAAATTGCAGGG+TGG - chr3_2:74183026-74183045 None:intergenic 35.0%
! CAATTTGCTCATCAATGCTT+TGG + chr3_2:74183177-74183196 Msa0424000:CDS 35.0%
AGACAAATGCCTATACACTA+TGG + chr3_2:74183225-74183244 Msa0424000:CDS 35.0%
TTGTTAGAGCCATAGTGTAT+AGG - chr3_2:74183237-74183256 None:intergenic 35.0%
ATCTATGTCTTACGCAATAG+GGG - chr3_2:74183283-74183302 None:intergenic 35.0%
GTATCTATGTCTTACGCAAT+AGG - chr3_2:74183285-74183304 None:intergenic 35.0%
GCTTATTCGCTTAAAATGGA+TGG + chr3_2:74183421-74183440 Msa0424000:CDS 35.0%
! CTTGTGCAGTAACATTTTGT+GGG + chr3_2:74183452-74183471 Msa0424000:CDS 35.0%
! TTGTGCAGTAACATTTTGTG+GGG + chr3_2:74183453-74183472 Msa0424000:CDS 35.0%
TTATCTGTCGTAACAATGGA+TGG + chr3_2:74183646-74183665 Msa0424000:CDS 35.0%
TATCTGTCGTAACAATGGAT+GGG + chr3_2:74183647-74183666 Msa0424000:CDS 35.0%
TTCGAAATTGTTCTTCGACA+GGG - chr3_2:74183683-74183702 None:intergenic 35.0%
AGCGCATAAGCCTTTAATTA+AGG + chr3_2:74183767-74183786 Msa0424000:intron 35.0%
GCGCATAAGCCTTTAATTAA+GGG + chr3_2:74183768-74183787 Msa0424000:intron 35.0%
CGCATAAGCCTTTAATTAAG+GGG + chr3_2:74183769-74183788 Msa0424000:intron 35.0%
GAATTAGGCCCCTTAATTAA+AGG - chr3_2:74183780-74183799 None:intergenic 35.0%
!! TACATGTTTGGTGTTTGGTT+AGG + chr3_2:74183856-74183875 Msa0424000:intron 35.0%
AAGGTCAAGCTTATGGAATA+TGG + chr3_2:74183896-74183915 Msa0424000:CDS 35.0%
AATCATACCTCGATTAAGAC+TGG - chr3_2:74184006-74184025 None:intergenic 35.0%
CAAACTTTCATCAAACCTTG+AGG + chr3_2:74184481-74184500 Msa0424000:CDS 35.0%
ACATCAGAAGGGTAATCTTT+GGG - chr3_2:74184545-74184564 None:intergenic 35.0%
AACATCAGAAGGGTAATCTT+TGG - chr3_2:74184546-74184565 None:intergenic 35.0%
TCTACAAAGGAACATCAGAA+GGG - chr3_2:74184556-74184575 None:intergenic 35.0%
ATCTACAAAGGAACATCAGA+AGG - chr3_2:74184557-74184576 None:intergenic 35.0%
CCTGGACCTTCTCAATAATA+AGG - chr3_2:74179167-74179186 None:intergenic 40.0%
CCTTATTATTGAGAAGGTCC+AGG + chr3_2:74179164-74179183 Msa0424000:CDS 40.0%
GTAAATGGGTCAGATATTCC+GGG - chr3_2:74179533-74179552 None:intergenic 40.0%
! TCAAACTGGCTCAGATATTC+CGG + chr3_2:74179715-74179734 Msa0424000:intron 40.0%
! TTTATTCGCCTCTGAGAATC+GGG + chr3_2:74179802-74179821 Msa0424000:intron 40.0%
!! GTCATCGATGTTTTGTTCAG+AGG - chr3_2:74180382-74180401 None:intergenic 40.0%
TCCAATTCAAGACGTGAACA+AGG + chr3_2:74180653-74180672 Msa0424000:intron 40.0%
ACCTTGTTCACGTCTTGAAT+TGG - chr3_2:74180657-74180676 None:intergenic 40.0%
! GTAGTACTACACCCACATTT+TGG + chr3_2:74181223-74181242 Msa0424000:intron 40.0%
TTAACCGTATCTCTTGGTAG+TGG - chr3_2:74181386-74181405 None:intergenic 40.0%
ACTACCAAGAGATACGGTTA+AGG + chr3_2:74181385-74181404 Msa0424000:intron 40.0%
CAATCCTTAACCGTATCTCT+TGG - chr3_2:74181392-74181411 None:intergenic 40.0%
ACAAAATCGCTGTAGGTATG+GGG - chr3_2:74181481-74181500 None:intergenic 40.0%
TCCTTTCTTTCACAAAGTCG+AGG + chr3_2:74181689-74181708 Msa0424000:intron 40.0%
GATGTGTATTCAACTCACGT+TGG + chr3_2:74181768-74181787 Msa0424000:intron 40.0%
CTGACCATAAAGATTAGGGA+TGG + chr3_2:74181862-74181881 Msa0424000:intron 40.0%
ATCCCTAAAATAAAGCAGGG+TGG + chr3_2:74182230-74182249 Msa0424000:intron 40.0%
!!! AGCCACCCTGCTTTATTTTA+GGG - chr3_2:74182235-74182254 None:intergenic 40.0%
!!! AAGCCACCCTGCTTTATTTT+AGG - chr3_2:74182236-74182255 None:intergenic 40.0%
!!! CAGTTCATTGATTTTCCTGG+AGG + chr3_2:74182350-74182369 Msa0424000:intron 40.0%
GAAACACACCAATCATGTTC+AGG + chr3_2:74182469-74182488 Msa0424000:CDS 40.0%
TTAGCAAAGAAATGGCTGTG+AGG + chr3_2:74182570-74182589 Msa0424000:CDS 40.0%
! TGTGAGGATGTATTCTGAGA+TGG + chr3_2:74182586-74182605 Msa0424000:CDS 40.0%
GATGGTCACTCTTCAAACTA+TGG + chr3_2:74182604-74182623 Msa0424000:CDS 40.0%
TATGGACAGCATATTCTACG+AGG + chr3_2:74182622-74182641 Msa0424000:CDS 40.0%
ACGAGACTGTGAAGTAATTG+TGG - chr3_2:74183260-74183279 None:intergenic 40.0%
CGCTGCTTATTCGCTTAAAA+TGG + chr3_2:74183417-74183436 Msa0424000:CDS 40.0%
! GCTTGTGCAGTAACATTTTG+TGG + chr3_2:74183451-74183470 Msa0424000:CDS 40.0%
!! TTTTAGGGAGATTTCCATGC+TGG + chr3_2:74183585-74183604 Msa0424000:intron 40.0%
CTGCAAAATTCATACCAGCA+TGG - chr3_2:74183602-74183621 None:intergenic 40.0%
! GAATTTTGCAGCAGTAATGG+AGG + chr3_2:74183611-74183630 Msa0424000:CDS 40.0%
TCGAAATTGTTCTTCGACAG+GGG - chr3_2:74183682-74183701 None:intergenic 40.0%
CTTCGAAATTGTTCTTCGAC+AGG - chr3_2:74183684-74183703 None:intergenic 40.0%
!! TTTGGTGTTTGGTTAGGTGA+TGG + chr3_2:74183862-74183881 Msa0424000:intron 40.0%
! TTGGTTAGGTGATGGTATTG+TGG + chr3_2:74183870-74183889 Msa0424000:intron 40.0%
! ATATGGAGTATCCGAGTAGA+TGG + chr3_2:74183913-74183932 Msa0424000:CDS 40.0%
GTGCATCATTTCCATCTACT+CGG - chr3_2:74183927-74183946 None:intergenic 40.0%
TCTCATGGTGAATGATGTTC+AGG + chr3_2:74184091-74184110 Msa0424000:intron 40.0%
ATGTTCAGGCTCTCAGTTAT+AGG + chr3_2:74184105-74184124 Msa0424000:intron 40.0%
TGTTCAGGCTCTCAGTTATA+GGG + chr3_2:74184106-74184125 Msa0424000:intron 40.0%
TCTGTACTTGGTTGAATCGT+CGG - chr3_2:74184150-74184169 None:intergenic 40.0%
! CTCATCAATTGGTCTGTACT+TGG - chr3_2:74184162-74184181 None:intergenic 40.0%
!! AATGGGTTGAAAGGAATGGT+TGG + chr3_2:74184228-74184247 Msa0424000:CDS 40.0%
TCAGTAAACATGTGCTCAAG+TGG - chr3_2:74184452-74184471 None:intergenic 40.0%
GTTCTCTTTCTTGTTCCTCA+AGG - chr3_2:74184499-74184518 None:intergenic 40.0%
! TTATGATGGGATGGGGGAAA+AGG - chr3_2:74179068-74179087 None:intergenic 45.0%
GTGATTAGGAACTAAGGTCC+TGG - chr3_2:74179185-74179204 None:intergenic 45.0%
! GTGCTGGTGATTAGGAACTA+AGG - chr3_2:74179191-74179210 None:intergenic 45.0%
!! CTTTGAAGGTGCTGGTGATT+AGG - chr3_2:74179199-74179218 None:intergenic 45.0%
AGCTAGCCAGCTTACTTTGA+AGG - chr3_2:74179213-74179232 None:intergenic 45.0%
!! AAGCTGGCTAGCTTGTTACT+AGG + chr3_2:74179220-74179239 Msa0424000:CDS 45.0%
!! GCTAGCTTGTTACTAGGATC+AGG + chr3_2:74179226-74179245 Msa0424000:CDS 45.0%
! GAAAGGTGTGAGAAGAAGAG+TGG - chr3_2:74179270-74179289 None:intergenic 45.0%
TGGCTGAGAAGAAGATCGAA+AGG - chr3_2:74179287-74179306 None:intergenic 45.0%
ATCCAACTGTGCATGTGCTT+TGG - chr3_2:74179338-74179357 None:intergenic 45.0%
TGTCATCCACGATGATGATC+AGG + chr3_2:74179366-74179385 Msa0424000:CDS 45.0%
CATGTACCTGATCATCATCG+TGG - chr3_2:74179375-74179394 None:intergenic 45.0%
! CAAACTGGCTCAGATATTCC+GGG + chr3_2:74179716-74179735 Msa0424000:intron 45.0%
AAAAGTTATTCCCTCCGTCC+CGG - chr3_2:74179737-74179756 None:intergenic 45.0%
! TTATTCGCCTCTGAGAATCG+GGG + chr3_2:74179803-74179822 Msa0424000:intron 45.0%
! AAGGGTCGTAGCGTTCTTTT+TGG + chr3_2:74180697-74180716 Msa0424000:intron 45.0%
GTCCGTGCCTATTCTATGAA+TGG - chr3_2:74181341-74181360 None:intergenic 45.0%
!! TATCTCTTGGTAGTGGCTTG+TGG - chr3_2:74181379-74181398 None:intergenic 45.0%
CAAGCCACTACCAAGAGATA+CGG + chr3_2:74181379-74181398 Msa0424000:intron 45.0%
GCCTCGACTTTGTGAAAGAA+AGG - chr3_2:74181693-74181712 None:intergenic 45.0%
TCAACACTCTTTGAGCCTTG+AGG + chr3_2:74181833-74181852 Msa0424000:intron 45.0%
ACTCTTTGAGCCTTGAGGTT+TGG + chr3_2:74181838-74181857 Msa0424000:intron 45.0%
TATGGTCAGACCAAACCTCA+AGG - chr3_2:74181851-74181870 None:intergenic 45.0%
AATGAACTGAAGCCGTGAGA+GGG - chr3_2:74182339-74182358 None:intergenic 45.0%
! GATTTTCCTGGAGGGAAAGT+TGG + chr3_2:74182359-74182378 Msa0424000:CDS 45.0%
TATCGAGTCCTCGATGAAGA+TGG + chr3_2:74182437-74182456 Msa0424000:CDS 45.0%
GCATATTCTACGAGGTACAG+AGG + chr3_2:74182630-74182649 Msa0424000:CDS 45.0%
TTCCTTCTACCTCACCTCAA+TGG + chr3_2:74182664-74182683 Msa0424000:CDS 45.0%
TCCTTCTACCTCACCTCAAT+GGG + chr3_2:74182665-74182684 Msa0424000:CDS 45.0%
AACTGCTTCTTCTCCCATTG+AGG - chr3_2:74182681-74182700 None:intergenic 45.0%
GAGGGAATTTCAATGCCTTG+CGG - chr3_2:74182766-74182785 None:intergenic 45.0%
ACACAACTTCCTCAAGCTGT+AGG + chr3_2:74183394-74183413 Msa0424000:CDS 45.0%
! GCAGTAACATTTTGTGGGGA+TGG + chr3_2:74183457-74183476 Msa0424000:CDS 45.0%
! GTAACATTTTGTGGGGATGG+AGG + chr3_2:74183460-74183479 Msa0424000:CDS 45.0%
! GGTGATGGTATTGTGGTGAA+AGG + chr3_2:74183877-74183896 Msa0424000:intron 45.0%
GTGGTGAAAGGTCAAGCTTA+TGG + chr3_2:74183889-74183908 Msa0424000:CDS 45.0%
GCAAAGACCAGTCTTAATCG+AGG + chr3_2:74183996-74184015 Msa0424000:CDS 45.0%
TTGAATCGTCGGATGTAGAG+TGG - chr3_2:74184139-74184158 None:intergenic 45.0%
GTGGAGTGACAAGGATGAAT+TGG + chr3_2:74184250-74184269 Msa0424000:CDS 45.0%
TGGAGCTTAGAAGCAGTGTA+AGG + chr3_2:74184270-74184289 Msa0424000:CDS 45.0%
TAGAAGCAGTGTAAGGAAGC+AGG + chr3_2:74184277-74184296 Msa0424000:CDS 45.0%
GTAAACATGTGCTCAAGTGG+AGG - chr3_2:74184449-74184468 None:intergenic 45.0%
!!! TTTTTATTGATTTATAATAA+TGG + chr3_2:74181188-74181207 Msa0424000:intron 5.0%
TTGTCTCGACAGCAAAGACG+TGG - chr3_2:74178992-74179011 None:intergenic 50.0%
! CCAGCTTACTTTGAAGGTGC+TGG - chr3_2:74179207-74179226 None:intergenic 50.0%
CCAGCACCTTCAAAGTAAGC+TGG + chr3_2:74179204-74179223 Msa0424000:CDS 50.0%
AGGTGTGAGAAGAAGAGTGG+TGG - chr3_2:74179267-74179286 None:intergenic 50.0%
CAACTGTGCATGTGCTTTGG+TGG - chr3_2:74179335-74179354 None:intergenic 50.0%
CACCAAAGCACATGCACAGT+TGG + chr3_2:74179333-74179352 Msa0424000:CDS 50.0%
TTCACATATTCCCTCCGTCC+CGG + chr3_2:74179512-74179531 Msa0424000:intron 50.0%
ATGGGTCAGATATTCCGGGA+CGG - chr3_2:74179529-74179548 None:intergenic 50.0%
GTTCAAACCCCGATTCTCAG+AGG - chr3_2:74179813-74179832 None:intergenic 50.0%
GAGAATCGGGGTTTGAACCT+CGG + chr3_2:74179815-74179834 Msa0424000:intron 50.0%
TCTTGCTAGTGGCTAGAGAC+TGG - chr3_2:74179845-74179864 None:intergenic 50.0%
TCACAAAGTCGAGGCAACCT+CGG + chr3_2:74181698-74181717 Msa0424000:intron 50.0%
TTGAACCAACCTTCATGCCG+AGG - chr3_2:74181718-74181737 None:intergenic 50.0%
CAATGAACTGAAGCCGTGAG+AGG - chr3_2:74182340-74182359 None:intergenic 50.0%
GTGAATCCAACTTTCCCTCC+AGG - chr3_2:74182368-74182387 None:intergenic 50.0%
TCATCGAGGACTCGATAGCA+AGG - chr3_2:74182434-74182453 None:intergenic 50.0%
TTGGCTCACCATCTTCATCG+AGG - chr3_2:74182448-74182467 None:intergenic 50.0%
TTCTACGAGGTACAGAGGCA+AGG + chr3_2:74182635-74182654 Msa0424000:CDS 50.0%
TCCCATTGAGGTGAGGTAGA+AGG - chr3_2:74182669-74182688 None:intergenic 50.0%
CTTCTTCTCCCATTGAGGTG+AGG - chr3_2:74182676-74182695 None:intergenic 50.0%
ATAGCAGAACTCCAGGCTCA+CGG - chr3_2:74183137-74183156 None:intergenic 50.0%
CAGGCTCTCAGTTATAGGGT+AGG + chr3_2:74184110-74184129 Msa0424000:intron 50.0%
GGGTTGAAAGGAATGGTTGG+TGG + chr3_2:74184231-74184250 Msa0424000:CDS 50.0%
!! GAATGGTTGGTGGAGTGACA+AGG + chr3_2:74184241-74184260 Msa0424000:CDS 50.0%
GTCAGATATTCCGGGACGGA+GGG - chr3_2:74179525-74179544 None:intergenic 55.0%
CTGGCTCAGATATTCCGGGA+CGG + chr3_2:74179720-74179739 Msa0424000:intron 55.0%
CTCAGATATTCCGGGACGGA+GGG + chr3_2:74179724-74179743 Msa0424000:intron 55.0%
TTGCGGCAGAAGCAAACCTG+AGG - chr3_2:74182749-74182768 None:intergenic 55.0%
! TCAGGTTTGCTTCTGCCGCA+AGG + chr3_2:74182748-74182767 Msa0424000:intron 55.0%
! ATTGCAGGGTGGTGCCAACT+TGG - chr3_2:74183015-74183034 None:intergenic 55.0%
GTGAGCCTGGAGTTCTGCTA+TGG + chr3_2:74183136-74183155 Msa0424000:CDS 55.0%
TAAGCAGCGCCTACAGCTTG+AGG - chr3_2:74183406-74183425 None:intergenic 55.0%
!! TGGGGATGGAGGTACTAGTG+AGG + chr3_2:74183471-74183490 Msa0424000:CDS 55.0%
GACGTGGAGAGCTTGTGTCG+TGG - chr3_2:74178976-74178995 None:intergenic 60.0%
GGTCAGATATTCCGGGACGG+AGG - chr3_2:74179526-74179545 None:intergenic 60.0%
GCTCAGATATTCCGGGACGG+AGG + chr3_2:74179723-74179742 Msa0424000:intron 60.0%
GGCTAGAGACTGGATGTCCG+AGG - chr3_2:74179835-74179854 None:intergenic 60.0%
TCGAGGCAACCTCGGCATGA+AGG + chr3_2:74181706-74181725 Msa0424000:intron 60.0%
GGCAACCTCGGCATGAAGGT+TGG + chr3_2:74181710-74181729 Msa0424000:intron 60.0%
GACTGCTAGTACCGTGAGCC+TGG + chr3_2:74183123-74183142 Msa0424000:intron 60.0%
CCTGGAGTTCTGCTATGGCG+CGG + chr3_2:74183141-74183160 Msa0424000:CDS 60.0%
CCGCGCCATAGCAGAACTCC+AGG - chr3_2:74183144-74183163 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 74178973 74184749 74178973 ID=Msa0424000;Name=Msa0424000
chr3_2 mRNA 74178973 74184749 74178973 ID=Msa0424000-mRNA-1;Parent=Msa0424000;Name=Msa0424000-mRNA-1;_AED=0.12;_eAED=0.12;_QI=184|1|1|1|1|1|9|175|471
chr3_2 exon 74178973 74179387 74178973 ID=Msa0424000-mRNA-1:exon:18654;Parent=Msa0424000-mRNA-1
chr3_2 exon 74182353 74182490 74182353 ID=Msa0424000-mRNA-1:exon:18655;Parent=Msa0424000-mRNA-1
chr3_2 exon 74182569 74182751 74182569 ID=Msa0424000-mRNA-1:exon:18656;Parent=Msa0424000-mRNA-1
chr3_2 exon 74183132 74183289 74183132 ID=Msa0424000-mRNA-1:exon:18657;Parent=Msa0424000-mRNA-1
chr3_2 exon 74183393 74183492 74183393 ID=Msa0424000-mRNA-1:exon:18658;Parent=Msa0424000-mRNA-1
chr3_2 exon 74183591 74183702 74183591 ID=Msa0424000-mRNA-1:exon:18659;Parent=Msa0424000-mRNA-1
chr3_2 exon 74183878 74184017 74183878 ID=Msa0424000-mRNA-1:exon:18660;Parent=Msa0424000-mRNA-1
chr3_2 exon 74184113 74184298 74184113 ID=Msa0424000-mRNA-1:exon:18661;Parent=Msa0424000-mRNA-1
chr3_2 exon 74184407 74184749 74184407 ID=Msa0424000-mRNA-1:exon:18662;Parent=Msa0424000-mRNA-1
chr3_2 five_prime_UTR 74178973 74179156 74178973 ID=Msa0424000-mRNA-1:five_prime_utr;Parent=Msa0424000-mRNA-1
chr3_2 CDS 74179157 74179387 74179157 ID=Msa0424000-mRNA-1:cds;Parent=Msa0424000-mRNA-1
chr3_2 CDS 74182353 74182490 74182353 ID=Msa0424000-mRNA-1:cds;Parent=Msa0424000-mRNA-1
chr3_2 CDS 74182569 74182751 74182569 ID=Msa0424000-mRNA-1:cds;Parent=Msa0424000-mRNA-1
chr3_2 CDS 74183132 74183289 74183132 ID=Msa0424000-mRNA-1:cds;Parent=Msa0424000-mRNA-1
chr3_2 CDS 74183393 74183492 74183393 ID=Msa0424000-mRNA-1:cds;Parent=Msa0424000-mRNA-1
chr3_2 CDS 74183591 74183702 74183591 ID=Msa0424000-mRNA-1:cds;Parent=Msa0424000-mRNA-1
chr3_2 CDS 74183878 74184017 74183878 ID=Msa0424000-mRNA-1:cds;Parent=Msa0424000-mRNA-1
chr3_2 CDS 74184113 74184298 74184113 ID=Msa0424000-mRNA-1:cds;Parent=Msa0424000-mRNA-1
chr3_2 CDS 74184407 74184574 74184407 ID=Msa0424000-mRNA-1:cds;Parent=Msa0424000-mRNA-1
chr3_2 three_prime_UTR 74184575 74184749 74184575 ID=Msa0424000-mRNA-1:three_prime_utr;Parent=Msa0424000-mRNA-1
Gene Sequence

>Msa0424000

ATGGCATCCTTATTATTGAGAAGGTCCAGGACCTTAGTTCCTAATCACCAGCACCTTCAAAGTAAGCTGGCTAGCTTGTTACTAGGATCAGGATCAACATTCATCAACCACCACTCTTCTTCTCACACCTTTCGATCTTCTTCTCAGCCATTTGTTGCATCATCACGTAATGAATCCACCAAAGCACATGCACAGTTGGATTTGCAGCATGTCATCCACGATGATGATCAGTTCATTGATTTTCCTGGAGGGAAAGTTGGATTCACTTCTGAAATGAGATTCATTTCTGATGCTTCTCATAAAAGAGTTCCTTGCTATCGAGTCCTCGATGAAGATGGTGAGCCAATGAAACACACCAATCATGTTCAGGTTAGCAAAGAAATGGCTGTGAGGATGTATTCTGAGATGGTCACTCTTCAAACTATGGACAGCATATTCTACGAGGTACAGAGGCAAGGAAGAATTTCCTTCTACCTCACCTCAATGGGAGAAGAAGCAGTTAACATTGCATCAGCAGCTGCACTTTCTTCTGATGATATTATCTTGCCTCAGTACCGTGAGCCTGGAGTTCTGCTATGGCGCGGTTTCACTCTGCAACAATTTGCTCATCAATGCTTTGGAAACACAAATGATTTTGGTAAAGGAAGACAAATGCCTATACACTATGGCTCTAACAACCACAATTACTTCACAGTCTCGTCCCCTATTGCAACACAACTTCCTCAAGCTGTAGGCGCTGCTTATTCGCTTAAAATGGATGGAAAAAGTGCTTGTGCAGTAACATTTTGTGGGGATGGAGGTACTAGTGAGGGAGATTTCCATGCTGGTATGAATTTTGCAGCAGTAATGGAGGCACCTGTTATTTTTATCTGTCGTAACAATGGATGGGCTATCAGTACCCCTGTCGAAGAACAATTTCGAAGTGATGGTATTGTGGTGAAAGGTCAAGCTTATGGAATATGGAGTATCCGAGTAGATGGAAATGATGCACTTGCCGTTTATAGTGCAGTTCATACTGCACGTGAAATTGCTATAAAAGAGCAAAGACCAGTCTTAATCGAGGCTCTCAGTTATAGGGTAGGACACCACTCTACATCCGACGATTCAACCAAGTACAGACCAATTGATGAGATTGAATATTGGAAGATGGAAAGAAGTCCTGTGAATAGATTCAAAAAATGGGTTGAAAGGAATGGTTGGTGGAGTGACAAGGATGAATTGGAGCTTAGAAGCAGTGTAAGGAAGCAGTTAATGCATGCTATTCAAGTTGCAGAGAAAGCACAAAAACCTCCACTTGAGCACATGTTTACTGATGTCTATGACAAACTTTCATCAAACCTTGAGGAACAAGAAAGAGAACTTAGAAAAATCATTGAGAAGCATCCCAAAGATTACCCTTCTGATGTTCCTTTGTAG

Protein sequence

>Msa0424000

MASLLLRRSRTLVPNHQHLQSKLASLLLGSGSTFINHHSSSHTFRSSSQPFVASSRNESTKAHAQLDLQHVIHDDDQFIDFPGGKVGFTSEMRFISDASHKRVPCYRVLDEDGEPMKHTNHVQVSKEMAVRMYSEMVTLQTMDSIFYEVQRQGRISFYLTSMGEEAVNIASAAALSSDDIILPQYREPGVLLWRGFTLQQFAHQCFGNTNDFGKGRQMPIHYGSNNHNYFTVSSPIATQLPQAVGAAYSLKMDGKSACAVTFCGDGGTSEGDFHAGMNFAAVMEAPVIFICRNNGWAISTPVEEQFRSDGIVVKGQAYGIWSIRVDGNDALAVYSAVHTAREIAIKEQRPVLIEALSYRVGHHSTSDDSTKYRPIDEIEYWKMERSPVNRFKKWVERNGWWSDKDELELRSSVRKQLMHAIQVAEKAQKPPLEHMFTDVYDKLSSNLEEQERELRKIIEKHPKDYPSDVPL*