Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982380 | XP_013461349.1 | 95.588 | 476 | 11 | 4 | 1 | 474 | 1 | 468 | 0.0 | 934 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982380 | sp|Q9LPL5|ODBA1_ARATH | 66.316 | 475 | 153 | 5 | 3 | 474 | 2 | 472 | 0.0 | 660 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982380 | A0A072V066 | 95.588 | 476 | 11 | 4 | 1 | 474 | 1 | 468 | 0.0 | 934 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031160 | Msa0982380 | 0.809665 | 1.690943e-50 | -8.615850e-47 |
| Msa0643520 | Msa0982380 | 0.812870 | 3.410657e-51 | -8.615850e-47 |
| Msa0683000 | Msa0982380 | 0.810642 | 1.041658e-50 | -8.615850e-47 |
| Msa0143630 | Msa0982380 | 0.874701 | 5.497592e-68 | -8.615850e-47 |
| Msa0374790 | Msa0982380 | 0.990444 | 1.153054e-182 | -8.615850e-47 |
| Msa0424000 | Msa0982380 | 0.954952 | 9.243407e-113 | -8.615850e-47 |
| Msa0470920 | Msa0982380 | 0.941812 | 2.165156e-101 | -8.615850e-47 |
| Msa0476070 | Msa0982380 | 0.814891 | 1.222891e-51 | -8.615850e-47 |
| Msa0481100 | Msa0982380 | 0.881307 | 2.675624e-70 | -8.615850e-47 |
| Msa0982380 | Msa1211600 | 0.878183 | 3.451791e-69 | -8.615850e-47 |
| Msa0982380 | Msa1217950 | 0.882395 | 1.080043e-70 | -8.615850e-47 |
| Msa0982380 | Msa1219790 | 0.806249 | 9.015132e-50 | -8.615850e-47 |
| Msa0982380 | Msa1267080 | 0.806925 | 6.491412e-50 | -8.615850e-47 |
| Msa0982380 | Msa1339870 | 0.872437 | 3.183058e-67 | -8.615850e-47 |
| Msa0982380 | Msa1401550 | 0.811565 | 6.568314e-51 | -8.615850e-47 |
| Msa0982380 | Msa1462640 | 0.850871 | 1.283173e-60 | -8.615850e-47 |
| Msa0268070 | Msa0982380 | 0.804158 | 2.471111e-49 | -8.615850e-47 |
| Msa0519910 | Msa0982380 | 0.808299 | 3.315090e-50 | -8.615850e-47 |
| Msa0580850 | Msa0982380 | 0.880803 | 4.060913e-70 | -8.615850e-47 |
| Msa0602180 | Msa0982380 | 0.831764 | 1.387049e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982380 | MtrunA17_Chr3g0125611 | 95.588 | 476 | 11 | 4 | 1 | 474 | 1 | 468 | 0.0 | 934 |
| Msa0982380 | MtrunA17_Chr3g0130311 | 69.949 | 396 | 119 | 0 | 79 | 474 | 54 | 449 | 0.0 | 620 |
| Msa0982380 | MtrunA17_Chr8g0371741 | 64.516 | 155 | 32 | 2 | 312 | 466 | 58 | 189 | 2.48e-52 | 175 |
| Msa0982380 | MtrunA17_Chr8g0364201 | 29.231 | 325 | 220 | 4 | 125 | 445 | 58 | 376 | 2.36e-41 | 152 |
| Msa0982380 | MtrunA17_Chr5g0414991 | 30.000 | 280 | 193 | 2 | 166 | 445 | 100 | 376 | 1.25e-38 | 144 |
| Msa0982380 | MtrunA17_Chr8g0345911 | 26.567 | 335 | 232 | 4 | 119 | 441 | 69 | 401 | 3.78e-33 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982380 | AT1G21400.1 | 66.316 | 475 | 153 | 5 | 3 | 474 | 2 | 472 | 0.0 | 660 |
| Msa0982380 | AT1G21400.5 | 66.316 | 475 | 153 | 5 | 3 | 474 | 54 | 524 | 0.0 | 660 |
| Msa0982380 | AT1G21400.3 | 74.300 | 393 | 101 | 0 | 82 | 474 | 5 | 397 | 0.0 | 644 |
| Msa0982380 | AT5G09300.1 | 67.285 | 431 | 138 | 1 | 44 | 474 | 45 | 472 | 0.0 | 630 |
| Msa0982380 | AT5G09300.2 | 71.139 | 395 | 114 | 0 | 80 | 474 | 7 | 401 | 0.0 | 626 |
| Msa0982380 | AT1G21400.4 | 73.947 | 380 | 99 | 0 | 95 | 474 | 1 | 380 | 0.0 | 619 |
| Msa0982380 | AT1G21400.2 | 73.947 | 380 | 99 | 0 | 95 | 474 | 1 | 380 | 0.0 | 619 |
| Msa0982380 | AT5G09300.3 | 69.745 | 314 | 92 | 1 | 44 | 357 | 45 | 355 | 6.03e-165 | 470 |
| Msa0982380 | AT1G21400.6 | 64.821 | 307 | 101 | 5 | 8 | 311 | 59 | 361 | 3.28e-141 | 410 |
| Msa0982380 | AT5G09300.4 | 66.914 | 269 | 86 | 1 | 44 | 312 | 45 | 310 | 2.83e-133 | 389 |
| Msa0982380 | AT5G34780.1 | 75.829 | 211 | 51 | 0 | 258 | 468 | 26 | 236 | 8.89e-108 | 324 |
| Msa0982380 | AT1G59900.2 | 27.692 | 325 | 225 | 4 | 125 | 445 | 52 | 370 | 2.67e-39 | 146 |
| Msa0982380 | AT1G59900.1 | 27.439 | 328 | 228 | 4 | 122 | 445 | 49 | 370 | 3.79e-39 | 146 |
| Msa0982380 | AT1G24180.1 | 25.846 | 325 | 231 | 4 | 125 | 445 | 56 | 374 | 4.51e-36 | 138 |
| Msa0982380 | AT1G01090.1 | 25.994 | 327 | 227 | 5 | 127 | 441 | 79 | 402 | 1.19e-29 | 120 |
Find 117 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGAAACACAAATGATTT+TGG | 0.179644 | 6_4:+22057878 | Msa0982380:CDS |
| CGCTGCTTATTCGCTTAAAA+TGG | 0.185602 | 6_4:+22058100 | Msa0982380:CDS |
| CCTATAATAAAATGCTATAA+TGG | 0.240641 | 6_4:-22053882 | None:intergenic |
| GTACAAATGGTTATTTGAAT+TGG | 0.266050 | 6_4:-22059271 | None:intergenic |
| CTTTGAAGGTGCTGGTGATT+AGG | 0.280461 | 6_4:-22053984 | None:intergenic |
| CAATTTGCTCATCAATGCTT+TGG | 0.310829 | 6_4:+22057860 | Msa0982380:CDS |
| CCTGGACCTTCTCAATAATA+AGG | 0.321938 | 6_4:-22053952 | None:intergenic |
| GTATCTATGTCTTACGCAAT+AGG | 0.330119 | 6_4:-22057965 | None:intergenic |
| AACATCAGAAGGGTAATCTT+TGG | 0.337903 | 6_4:-22059233 | None:intergenic |
| CTCATCAATTGGTCTGTACT+TGG | 0.357544 | 6_4:-22058842 | None:intergenic |
| TCAGAATGTAAAATAAAGTT+GGG | 0.378426 | 6_4:+22059306 | Msa0982380:three_prime_UTR |
| CTATAATAAAATGCTATAAT+GGG | 0.383565 | 6_4:-22053881 | None:intergenic |
| AACATGATTGGTGTGTTTCA+TGG | 0.386194 | 6_4:-22057148 | None:intergenic |
| TATCTATGTCTTACGCAATA+GGG | 0.387172 | 6_4:-22057964 | None:intergenic |
| CAATTGATGAGATTGAATAT+TGG | 0.399761 | 6_4:+22058854 | Msa0982380:CDS |
| TCCTTCTACCTCACCTCAAT+GGG | 0.406472 | 6_4:+22057348 | Msa0982380:CDS |
| TGATGATATTATCTTGCCTC+AGG | 0.408765 | 6_4:+22057413 | Msa0982380:CDS |
| GATGGTCACTCTTCAAACTA+TGG | 0.409967 | 6_4:+22057287 | Msa0982380:CDS |
| AGCTAGCCAGCTTACTTTGA+AGG | 0.410513 | 6_4:-22053998 | None:intergenic |
| TCCCATTGAGGTGAGGTAGA+AGG | 0.412039 | 6_4:-22057349 | None:intergenic |
| CAATATTCAATCTCATCAAT+TGG | 0.421389 | 6_4:-22058853 | None:intergenic |
| GTCAGAATGTAAAATAAAGT+TGG | 0.424656 | 6_4:+22059305 | Msa0982380:three_prime_UTR |
| TTCCTTCTACCTCACCTCAA+TGG | 0.425377 | 6_4:+22057347 | Msa0982380:CDS |
| GTGGAGTGACAAGGATGAAT+TGG | 0.426460 | 6_4:+22058933 | Msa0982380:CDS |
| ACATCAGAAGGGTAATCTTT+GGG | 0.439203 | 6_4:-22059232 | None:intergenic |
| CCAGCTTACTTTGAAGGTGC+TGG | 0.439279 | 6_4:-22053992 | None:intergenic |
| AAGGTCAAGCTTATGGAATA+TGG | 0.446678 | 6_4:+22058579 | Msa0982380:CDS |
| TGTGACTGAATATAGATAGA+TGG | 0.446701 | 6_4:+22053926 | Msa0982380:exon |
| ATATGGAGTATCCGAGTAGA+TGG | 0.447516 | 6_4:+22058596 | Msa0982380:CDS |
| GAAACACACCAATCATGTTC+AGG | 0.450292 | 6_4:+22057152 | Msa0982380:CDS |
| GCTAGCTTGTTACTAGGATC+AGG | 0.454907 | 6_4:+22054014 | Msa0982380:CDS |
| TGTTCAGGTTAGCAAAGAAA+TGG | 0.458006 | 6_4:+22057245 | Msa0982380:intron |
| GTTCTCTTTCTTGTTCCTCA+AGG | 0.461180 | 6_4:-22059186 | None:intergenic |
| GACTGCTAGTACCGTGAGCC+TGG | 0.461768 | 6_4:+22057806 | Msa0982380:intron |
| AGTATGAACTGCACTATAAA+CGG | 0.462524 | 6_4:-22058633 | None:intergenic |
| GGGAAAATTTATGATGGGAT+GGG | 0.465427 | 6_4:-22053861 | None:intergenic |
| ATCCAACTGTGCATGTGCTT+TGG | 0.466487 | 6_4:-22054123 | None:intergenic |
| AACTGCTTCTTCTCCCATTG+AGG | 0.472929 | 6_4:-22057361 | None:intergenic |
| CAACTGTGCATGTGCTTTGG+TGG | 0.474846 | 6_4:-22054120 | None:intergenic |
| TTATCTGTCGTAACAATGGA+TGG | 0.475021 | 6_4:+22058329 | Msa0982380:CDS |
| CGATGATGACCATGATGATC+AGG | 0.475797 | 6_4:+22054163 | Msa0982380:CDS |
| GCTTATTCGCTTAAAATGGA+TGG | 0.487975 | 6_4:+22058104 | Msa0982380:CDS |
| GTGGTGAAAGGTCAAGCTTA+TGG | 0.488654 | 6_4:+22058572 | Msa0982380:CDS |
| AGACAAATGCCTATACACTA+TGG | 0.491107 | 6_4:+22057908 | Msa0982380:CDS |
| TATAATGGGAAAATTTATGA+TGG | 0.494327 | 6_4:-22053867 | None:intergenic |
| CTTCGAAATTGTTCTTCGAC+GGG | 0.497536 | 6_4:-22058364 | None:intergenic |
| ACATGATTGGTGTGTTTCAT+GGG | 0.499248 | 6_4:-22057147 | None:intergenic |
| ATATTCAGTCACAATTTCAC+AGG | 0.506274 | 6_4:-22053916 | None:intergenic |
| TGAGATTGAATATTGGAAGA+TGG | 0.508510 | 6_4:+22058861 | Msa0982380:CDS |
| TGGGAAAATTTATGATGGGA+TGG | 0.514861 | 6_4:-22053862 | None:intergenic |
| ACTGTGAATTTGAGTACAAA+TGG | 0.515898 | 6_4:-22059284 | None:intergenic |
| TTGTTAGAGCCATAGTGTAT+AGG | 0.517990 | 6_4:-22057917 | None:intergenic |
| GTGAATCCAACTTTCCCTCC+AGG | 0.523019 | 6_4:-22057048 | None:intergenic |
| CCGCGCCATAGCAGAACTCC+AGG | 0.523733 | 6_4:-22057824 | None:intergenic |
| ATCTACAAATGAACATCAGA+AGG | 0.524088 | 6_4:-22059244 | None:intergenic |
| CACCAAAGCACATGCACAGT+TGG | 0.527776 | 6_4:+22054121 | Msa0982380:CDS |
| TAGAAGCAATGTAAGGAAGC+AGG | 0.529844 | 6_4:+22058960 | Msa0982380:CDS |
| AAGCTGGCTAGCTTGTTACT+AGG | 0.530994 | 6_4:+22054008 | Msa0982380:CDS |
| GGAAAATTTATGATGGGATG+GGG | 0.531529 | 6_4:-22053860 | None:intergenic |
| GTGCTGGTGATTAGGAACTA+AGG | 0.533834 | 6_4:-22053976 | None:intergenic |
| TCGAAATTGTTCTTCGACGG+GGG | 0.534961 | 6_4:-22058362 | None:intergenic |
| TTGTAGGGAGATTTCCATGC+TGG | 0.536226 | 6_4:+22058268 | Msa0982380:intron |
| GTGATTAGGAACTAAGGTCC+TGG | 0.538397 | 6_4:-22053970 | None:intergenic |
| ATGACATACCTGAACATGAT+TGG | 0.542831 | 6_4:-22057160 | None:intergenic |
| TCTGTACTTGGTTGAATCAT+CGG | 0.543455 | 6_4:-22058830 | None:intergenic |
| ACTTCGAAATTGTTCTTCGA+CGG | 0.545306 | 6_4:-22058365 | None:intergenic |
| TGGAGCTTAGAAGCAATGTA+AGG | 0.546431 | 6_4:+22058953 | Msa0982380:CDS |
| CCTTATTATTGAGAAGGTCC+AGG | 0.551779 | 6_4:+22053952 | Msa0982380:CDS |
| GGGTTGAAAGGAATGGTTGG+TGG | 0.552659 | 6_4:+22058914 | Msa0982380:CDS |
| TGGCATCCTTATTATTGAGA+AGG | 0.553122 | 6_4:+22053946 | Msa0982380:CDS |
| GTGAGCCTGGAGTTCTGCTA+TGG | 0.557948 | 6_4:+22057819 | Msa0982380:CDS |
| TATCTGTCGTAACAATGGAT+GGG | 0.559058 | 6_4:+22058330 | Msa0982380:CDS |
| TTGGTTAGGTGATGGTATTG+TGG | 0.562170 | 6_4:+22058553 | Msa0982380:intron |
| AATCATACCTCGATTAAGAC+TGG | 0.563171 | 6_4:-22058686 | None:intergenic |
| CAGGCTCTTAGTTATAGAGT+AGG | 0.563482 | 6_4:+22058793 | Msa0982380:intron |
| CCAGCACCTTCAAAGTAAGC+TGG | 0.564260 | 6_4:+22053992 | Msa0982380:CDS |
| TAAGCAGCGCCTACAGCTTG+AGG | 0.572650 | 6_4:-22058086 | None:intergenic |
| TTACGTGATGATGCAACAAA+TGG | 0.572708 | 6_4:-22054092 | None:intergenic |
| CTTCTTCTCCCATTGAGGTG+AGG | 0.577078 | 6_4:-22057356 | None:intergenic |
| GAAAGGTGTGAGAAGAAGAG+TGG | 0.579507 | 6_4:-22054055 | None:intergenic |
| TATCGAGTCCTCGATGAAGA+TGG | 0.584034 | 6_4:+22057120 | Msa0982380:CDS |
| GTTAATGCATGCTATTCAAG+TGG | 0.587425 | 6_4:+22059096 | Msa0982380:intron |
| GAAAATTTATGATGGGATGG+GGG | 0.587743 | 6_4:-22053859 | None:intergenic |
| CAGAATGTAAAATAAAGTTG+GGG | 0.590056 | 6_4:+22059307 | Msa0982380:three_prime_UTR |
| AATGGGTTGAAAGGAATGGT+TGG | 0.592679 | 6_4:+22058911 | Msa0982380:CDS |
| ATCTATGTCTTACGCAATAG+GGG | 0.597213 | 6_4:-22057963 | None:intergenic |
| TCAGTAAACATGTCCTCAAG+TGG | 0.601869 | 6_4:-22059139 | None:intergenic |
| TTGTCTCGACAGCAAAGACG+TGG | 0.604152 | 6_4:-22053777 | None:intergenic |
| TCATCGAGGACTCGATAGCA+AGG | 0.608678 | 6_4:-22057114 | None:intergenic |
| GTGCATCATTTCCATCTACT+CGG | 0.610489 | 6_4:-22058607 | None:intergenic |
| CCTGGAGTTCTGCTATGGCG+CGG | 0.620040 | 6_4:+22057824 | Msa0982380:CDS |
| CAAACTTTCATCAAACCTTG+AGG | 0.623308 | 6_4:+22059171 | Msa0982380:CDS |
| TTCTACGAGGTACAGAGGCA+AGG | 0.623632 | 6_4:+22057318 | Msa0982380:CDS |
| ATAATGGGAAAATTTATGAT+GGG | 0.623755 | 6_4:-22053866 | None:intergenic |
| TGGCTGAGAAGAAGATCGAA+AGG | 0.629379 | 6_4:-22054072 | None:intergenic |
| GAATGGTTGGTGGAGTGACA+AGG | 0.638989 | 6_4:+22058924 | Msa0982380:CDS |
| GGTGATGGTATTGTGGTGAA+AGG | 0.640292 | 6_4:+22058560 | Msa0982380:intron |
| ATAGCAGAACTCCAGGCTCA+CGG | 0.640845 | 6_4:-22057817 | None:intergenic |
| TGTGAGGATGTATTCTGAGA+TGG | 0.641743 | 6_4:+22057269 | Msa0982380:CDS |
| ACGAGACTGTGAAGTAATTG+TGG | 0.646505 | 6_4:-22057940 | None:intergenic |
| CTGCAAAATTCATACCAGCA+TGG | 0.646981 | 6_4:-22058282 | None:intergenic |
| ACACAACTTCCTCAAGCTGT+AGG | 0.653871 | 6_4:+22058077 | Msa0982380:CDS |
| TGGGGATGGAGGTACTAGTG+AGG | 0.654726 | 6_4:+22058154 | Msa0982380:CDS |
| GTAAACATGTCCTCAAGTGG+AGG | 0.665466 | 6_4:-22059136 | None:intergenic |
| TATTCAGTCACAATTTCACA+GGG | 0.667420 | 6_4:-22053915 | None:intergenic |
| TCTACAAATGAACATCAGAA+GGG | 0.668191 | 6_4:-22059243 | None:intergenic |
| TTCGAAATTGTTCTTCGACG+GGG | 0.672988 | 6_4:-22058363 | None:intergenic |
| GCATATTCTACGAGGTACAG+AGG | 0.676162 | 6_4:+22057313 | Msa0982380:CDS |
| GTGCATGTACCTGATCATCA+TGG | 0.678855 | 6_4:-22054172 | None:intergenic |
| GCAAAGACCAGTCTTAATCG+AGG | 0.679916 | 6_4:+22058679 | Msa0982380:CDS |
| TTGAATCATCGGATGTAGAG+TGG | 0.691061 | 6_4:-22058819 | None:intergenic |
| GATCATCATGGTCATCATCG+TGG | 0.692606 | 6_4:-22054160 | None:intergenic |
| AGAATGTAAAATAAAGTTGG+GGG | 0.697292 | 6_4:+22059308 | Msa0982380:three_prime_UTR |
| TTAGCAAAGAAATGGCTGTG+AGG | 0.717152 | 6_4:+22057253 | Msa0982380:CDS |
| AGGTGTGAGAAGAAGAGTGG+TGG | 0.725352 | 6_4:-22054052 | None:intergenic |
| TGGGCTCACCATCTTCATCG+AGG | 0.738323 | 6_4:-22057128 | None:intergenic |
| TATGGACAGCATATTCTACG+AGG | 0.801534 | 6_4:+22057305 | Msa0982380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATAATTAATTTTTTAA+TGG | + | chr6_4:22054871-22054890 | Msa0982380:intron | 0.0% |
| !! | TTATTTAAATTTATATAAAT+TGG | + | chr6_4:22055807-22055826 | Msa0982380:intron | 0.0% |
| !!! | ATTTTGCTAATATAAATTTA+GGG | - | chr6_4:22054854-22054873 | None:intergenic | 10.0% |
| !!! | AATTTTGCTAATATAAATTT+AGG | - | chr6_4:22054855-22054874 | None:intergenic | 10.0% |
| !!! | TTATTTTTTTCATTTACAAA+AGG | + | chr6_4:22055049-22055068 | Msa0982380:intron | 10.0% |
| !!! | TACAGTTTTTAATATTTTTT+TGG | + | chr6_4:22055095-22055114 | Msa0982380:intron | 10.0% |
| !! | TAGATAATTAAAGATATTAA+CGG | - | chr6_4:22055200-22055219 | None:intergenic | 10.0% |
| !!! | AATTTTATTTATGACTAAAT+GGG | - | chr6_4:22055436-22055455 | None:intergenic | 10.0% |
| !!! | TAATTTTATTTATGACTAAA+TGG | - | chr6_4:22055437-22055456 | None:intergenic | 10.0% |
| !!! | ATTTAAAATTTTAAAACCAT+AGG | + | chr6_4:22055881-22055900 | Msa0982380:intron | 10.0% |
| !!! | TTTAAAATTTTAAAACCATA+GGG | + | chr6_4:22055882-22055901 | Msa0982380:intron | 10.0% |
| !!! | TTATTAAAATGTTACTTTTA+TGG | - | chr6_4:22059385-22059404 | None:intergenic | 10.0% |
| !! | CTATAATAAAATGCTATAAT+GGG | - | chr6_4:22053884-22053903 | None:intergenic | 15.0% |
| !!! | AAAACATGATTTTTAGTTTT+TGG | - | chr6_4:22054773-22054792 | None:intergenic | 15.0% |
| !! | TTATACATTAGTAAAAAGTA+TGG | + | chr6_4:22055303-22055322 | Msa0982380:intron | 15.0% |
| !!! | TTATCTTTTGATTCAATTAA+AGG | + | chr6_4:22055490-22055509 | Msa0982380:intron | 15.0% |
| !!! | TATCTTTTGATTCAATTAAA+GGG | + | chr6_4:22055491-22055510 | Msa0982380:intron | 15.0% |
| !!! | TTCATGTATTTTATTTTAGT+GGG | - | chr6_4:22055718-22055737 | None:intergenic | 15.0% |
| !!! | ATTCATGTATTTTATTTTAG+TGG | - | chr6_4:22055719-22055738 | None:intergenic | 15.0% |
| !!! | CAAATATTAGTATTTTTTTG+AGG | + | chr6_4:22055919-22055938 | Msa0982380:intron | 15.0% |
| !!! | TTTTGTGATAAAAAAAAGTT+TGG | - | chr6_4:22056582-22056601 | None:intergenic | 15.0% |
| !! | TATATTATTATCATTGTCTA+AGG | - | chr6_4:22056647-22056666 | None:intergenic | 15.0% |
| !! | ACTGTTAAAAATAAAATACT+TGG | + | chr6_4:22056820-22056839 | Msa0982380:intron | 15.0% |
| !!! | ATTAGGTTCTAAAATTATTT+TGG | + | chr6_4:22056883-22056902 | Msa0982380:intron | 15.0% |
| !! | AATATAGCAAAATGAAAAAA+GGG | - | chr6_4:22057494-22057513 | None:intergenic | 15.0% |
| !! | TAATATAGCAAAATGAAAAA+AGG | - | chr6_4:22057495-22057514 | None:intergenic | 15.0% |
| !! | TGAGATAAGAAGAAAAATAA+TGG | + | chr6_4:22053812-22053831 | Msa0982380:five_prime_UTR | 20.0% |
| !!! | ATAATGGGAAAATTTATGAT+GGG | - | chr6_4:22053869-22053888 | None:intergenic | 20.0% |
| !!! | TATAATGGGAAAATTTATGA+TGG | - | chr6_4:22053870-22053889 | None:intergenic | 20.0% |
| !! | CCTATAATAAAATGCTATAA+TGG | - | chr6_4:22053885-22053904 | None:intergenic | 20.0% |
| !!! | CCATTATAGCATTTTATTAT+AGG | + | chr6_4:22053882-22053901 | Msa0982380:five_prime_UTR | 20.0% |
| !! | AATTATAAATTAAAATCGCG+TGG | + | chr6_4:22054586-22054605 | Msa0982380:intron | 20.0% |
| !! | ATTATAAATTAAAATCGCGT+GGG | + | chr6_4:22054587-22054606 | Msa0982380:intron | 20.0% |
| !! | ACTAATATGACATGAAAAAA+TGG | + | chr6_4:22054981-22055000 | Msa0982380:intron | 20.0% |
| !! | AAATACAAATATTAGCATGT+AGG | - | chr6_4:22055285-22055304 | None:intergenic | 20.0% |
| !!! | TCATGTATTTTATTTTAGTG+GGG | - | chr6_4:22055717-22055736 | None:intergenic | 20.0% |
| !!! | GTTTTTTTAAATAATCCCTA+TGG | - | chr6_4:22055900-22055919 | None:intergenic | 20.0% |
| !!! | ATATTAGTATTTTTTTGAGG+TGG | + | chr6_4:22055922-22055941 | Msa0982380:intron | 20.0% |
| !!! | AACTTTTATGTTTTTTTGGA+TGG | - | chr6_4:22056020-22056039 | None:intergenic | 20.0% |
| !! | TTTGATTAGATGAGATTAAT+TGG | - | chr6_4:22056045-22056064 | None:intergenic | 20.0% |
| !!! | TAGTTTTATTTTGTATGTGT+TGG | - | chr6_4:22056339-22056358 | None:intergenic | 20.0% |
| !! | AAATAAAATACTTGGAACAA+AGG | + | chr6_4:22056828-22056847 | Msa0982380:intron | 20.0% |
| !! | ATGAATAATGCAACATTTAT+GGG | - | chr6_4:22056978-22056997 | None:intergenic | 20.0% |
| !! | AATGAATAATGCAACATTTA+TGG | - | chr6_4:22056979-22056998 | None:intergenic | 20.0% |
| !! | TGGATCTATAATAACAAAAT+TGG | + | chr6_4:22057530-22057549 | Msa0982380:intron | 20.0% |
| !! | ATATCATAAGTGTCTTAAAT+TGG | - | chr6_4:22057583-22057602 | None:intergenic | 20.0% |
| !!! | TTGAAATTTCATTAGTTTCA+TGG | + | chr6_4:22057671-22057690 | Msa0982380:intron | 20.0% |
| !! | TATTAGTTAAGAAAATTGCA+GGG | - | chr6_4:22057712-22057731 | None:intergenic | 20.0% |
| !! | TTATTAGTTAAGAAAATTGC+AGG | - | chr6_4:22057713-22057732 | None:intergenic | 20.0% |
| !! | ATATAAGTGTTCAATAAAAC+AGG | - | chr6_4:22057748-22057767 | None:intergenic | 20.0% |
| !! | TTATAACATGTTACAGTATA+TGG | - | chr6_4:22057990-22058009 | None:intergenic | 20.0% |
| !!! | CTGATATTTGAAATATTGTA+GGG | + | chr6_4:22058253-22058272 | Msa0982380:intron | 20.0% |
| !!! | TTCTAGTTTTTCTAATATCT+CGG | - | chr6_4:22058516-22058535 | None:intergenic | 20.0% |
| !! | TGTGAATAGATTCAAAAAAT+GGG | + | chr6_4:22058894-22058913 | Msa0982380:CDS | 20.0% |
| !! | TTAGTCCATAATATAAATCT+TGG | + | chr6_4:22059016-22059035 | Msa0982380:intron | 20.0% |
| !! | TCAGAATGTAAAATAAAGTT+GGG | + | chr6_4:22059306-22059325 | Msa0982380:three_prime_UTR | 20.0% |
| ! | TTAGAACTAAAGAAACTGAA+CGG | - | chr6_4:22054223-22054242 | None:intergenic | 25.0% |
| ! | ATGAAGTGAAATACAAAATG+TGG | + | chr6_4:22054404-22054423 | Msa0982380:intron | 25.0% |
| ! | TTATAAATTAAAATCGCGTG+GGG | + | chr6_4:22054588-22054607 | Msa0982380:intron | 25.0% |
| ! | AAATTATTACAAGAATCACG+TGG | + | chr6_4:22054631-22054650 | Msa0982380:intron | 25.0% |
| ! | AATTATTACAAGAATCACGT+GGG | + | chr6_4:22054632-22054651 | Msa0982380:intron | 25.0% |
| !! | CATCTTCTAAAAAAACATGA+AGG | - | chr6_4:22054674-22054693 | None:intergenic | 25.0% |
| !!! | ATTGGACATGTATTTTGAAA+CGG | + | chr6_4:22055360-22055379 | Msa0982380:intron | 25.0% |
| !! | AGTGATTTTTGCTAAAGATA+TGG | + | chr6_4:22055547-22055566 | Msa0982380:intron | 25.0% |
| !!! | AAGATTTAAGTTGAGGAAAT+TGG | - | chr6_4:22055605-22055624 | None:intergenic | 25.0% |
| !!! | ATGTATTTTATTTTAGTGGG+GGG | - | chr6_4:22055715-22055734 | None:intergenic | 25.0% |
| !!! | CATGTATTTTATTTTAGTGG+GGG | - | chr6_4:22055716-22055735 | None:intergenic | 25.0% |
| !!! | TAGGGGTAGATTTTTTTTTT+TGG | + | chr6_4:22055970-22055989 | Msa0982380:intron | 25.0% |
| !!! | AGGGGTAGATTTTTTTTTTT+GGG | + | chr6_4:22055971-22055990 | Msa0982380:intron | 25.0% |
| !!! | GGTGAACTTTTATGTTTTTT+TGG | - | chr6_4:22056024-22056043 | None:intergenic | 25.0% |
| ! | TTACAAACCATTCATAGAAT+AGG | + | chr6_4:22056078-22056097 | Msa0982380:intron | 25.0% |
| ! | ATAAAGTTGACTAAGTTGTT+GGG | - | chr6_4:22056203-22056222 | None:intergenic | 25.0% |
| ! | TATAAAGTTGACTAAGTTGT+TGG | - | chr6_4:22056204-22056223 | None:intergenic | 25.0% |
| !!! | ATAATCACCTTTTTTTAGTG+TGG | + | chr6_4:22056264-22056283 | Msa0982380:intron | 25.0% |
| ! | ATCAAATCCACACTAAAAAA+AGG | - | chr6_4:22056274-22056293 | None:intergenic | 25.0% |
| ! | AAAAAAAAGTTTGGATGACT+TGG | - | chr6_4:22056573-22056592 | None:intergenic | 25.0% |
| ! | TTATCACAAAAATAGAGTCT+AGG | + | chr6_4:22056591-22056610 | Msa0982380:intron | 25.0% |
| !! | ATAAATTGGTCTATTATTGG+AGG | - | chr6_4:22056620-22056639 | None:intergenic | 25.0% |
| !! | GTGATAAATTGGTCTATTAT+TGG | - | chr6_4:22056623-22056642 | None:intergenic | 25.0% |
| ! | TTCTTTAGTTAAAACACAAC+TGG | + | chr6_4:22056685-22056704 | Msa0982380:intron | 25.0% |
| !! | TTGATCTCATACACATATTT+TGG | - | chr6_4:22056859-22056878 | None:intergenic | 25.0% |
| ! | CAACATTTATGGGAATAATT+TGG | - | chr6_4:22056968-22056987 | None:intergenic | 25.0% |
| ! | AGGGAGAATTAAATAATGTT+GGG | - | chr6_4:22057003-22057022 | None:intergenic | 25.0% |
| !!! | TTCTTCAACGATATTTTAAG+AGG | - | chr6_4:22057222-22057241 | None:intergenic | 25.0% |
| !! | TAAATTGGTGATTCACATTT+AGG | - | chr6_4:22057568-22057587 | None:intergenic | 25.0% |
| !! | TTTGGAAACACAAATGATTT+TGG | + | chr6_4:22057878-22057897 | Msa0982380:CDS | 25.0% |
| !!! | AACACAAATGATTTTGGTAA+AGG | + | chr6_4:22057884-22057903 | Msa0982380:CDS | 25.0% |
| ! | CTGAATAAGTTAATGTTGTT+CGG | + | chr6_4:22058041-22058060 | Msa0982380:intron | 25.0% |
| ! | TATATGAACTATCTCTCTTA+AGG | + | chr6_4:22058191-22058210 | Msa0982380:intron | 25.0% |
| ! | TATTTCAAATATCAGCAATG+AGG | - | chr6_4:22058248-22058267 | None:intergenic | 25.0% |
| !! | GCTGATATTTGAAATATTGT+AGG | + | chr6_4:22058252-22058271 | Msa0982380:intron | 25.0% |
| ! | TTACGACAGATAAAAATAAC+AGG | - | chr6_4:22058322-22058341 | None:intergenic | 25.0% |
| !! | ATTTTTATCTGTCGTAACAA+TGG | + | chr6_4:22058325-22058344 | Msa0982380:CDS | 25.0% |
| !! | GTTTGAGACTAAAAATAAGT+AGG | - | chr6_4:22058406-22058425 | None:intergenic | 25.0% |
| ! | CATAAACTTGAACATGAATT+AGG | - | chr6_4:22058478-22058497 | None:intergenic | 25.0% |
| ! | AAACTAGAAACTTACATGTT+TGG | + | chr6_4:22058527-22058546 | Msa0982380:intron | 25.0% |
| ! | CAATATTCAATCTCATCAAT+TGG | - | chr6_4:22058856-22058875 | None:intergenic | 25.0% |
| ! | CAATTGATGAGATTGAATAT+TGG | + | chr6_4:22058854-22058873 | Msa0982380:CDS | 25.0% |
| !!! | CATTTTTTGAATCTATTCAC+AGG | - | chr6_4:22058895-22058914 | None:intergenic | 25.0% |
| ! | CTGTGAATAGATTCAAAAAA+TGG | + | chr6_4:22058893-22058912 | Msa0982380:CDS | 25.0% |
| ! | GCATACCAAGATTTATATTA+TGG | - | chr6_4:22059024-22059043 | None:intergenic | 25.0% |
| ! | AAAATGTCAAAACTCAAAAC+AGG | - | chr6_4:22059056-22059075 | None:intergenic | 25.0% |
| ! | GTACAAATGGTTATTTGAAT+TGG | - | chr6_4:22059274-22059293 | None:intergenic | 25.0% |
| ! | GTCAGAATGTAAAATAAAGT+TGG | + | chr6_4:22059305-22059324 | Msa0982380:three_prime_UTR | 25.0% |
| ! | CAGAATGTAAAATAAAGTTG+GGG | + | chr6_4:22059307-22059326 | Msa0982380:three_prime_UTR | 25.0% |
| ! | AGAATGTAAAATAAAGTTGG+GGG | + | chr6_4:22059308-22059327 | Msa0982380:three_prime_UTR | 25.0% |
| TATTCAGTCACAATTTCACA+GGG | - | chr6_4:22053918-22053937 | None:intergenic | 30.0% | |
| ATATTCAGTCACAATTTCAC+AGG | - | chr6_4:22053919-22053938 | None:intergenic | 30.0% | |
| TGTGACTGAATATAGATAGA+TGG | + | chr6_4:22053926-22053945 | Msa0982380:exon | 30.0% | |
| !! | TTTAGTTCTAATCAGCCTAT+AGG | + | chr6_4:22054232-22054251 | Msa0982380:intron | 30.0% |
| !! | TTAGTTCTAATCAGCCTATA+GGG | + | chr6_4:22054233-22054252 | Msa0982380:intron | 30.0% |
| TCTCATCAATAGAATTCAGA+TGG | - | chr6_4:22054307-22054326 | None:intergenic | 30.0% | |
| GAATAAGATGAGATAAGTTC+AGG | - | chr6_4:22054333-22054352 | None:intergenic | 30.0% | |
| ATCAATTAGAGAAAACACGT+GGG | - | chr6_4:22054548-22054567 | None:intergenic | 30.0% | |
| AATCAATTAGAGAAAACACG+TGG | - | chr6_4:22054549-22054568 | None:intergenic | 30.0% | |
| ATTATTACAAGAATCACGTG+GGG | + | chr6_4:22054633-22054652 | Msa0982380:intron | 30.0% | |
| !!! | CGATGACATTTTTAGTAGAA+AGG | + | chr6_4:22054958-22054977 | Msa0982380:intron | 30.0% |
| !! | CTTGGACATGTATTTTGAAA+CGG | - | chr6_4:22055142-22055161 | None:intergenic | 30.0% |
| ATAGTGCACATTGCAAAAAT+TGG | + | chr6_4:22055342-22055361 | Msa0982380:intron | 30.0% | |
| ATGGGATATTTAGTGATTGT+AGG | - | chr6_4:22055418-22055437 | None:intergenic | 30.0% | |
| TGCTCTAATCCATATAATGA+TGG | + | chr6_4:22055574-22055593 | Msa0982380:intron | 30.0% | |
| GCTCTAATCCATATAATGAT+GGG | + | chr6_4:22055575-22055594 | Msa0982380:intron | 30.0% | |
| !! | TGTACCGTTAGTAATTTGTT+AGG | + | chr6_4:22055951-22055970 | Msa0982380:intron | 30.0% |
| !! | GTACCGTTAGTAATTTGTTA+GGG | + | chr6_4:22055952-22055971 | Msa0982380:intron | 30.0% |
| !! | TACCGTTAGTAATTTGTTAG+GGG | + | chr6_4:22055953-22055972 | Msa0982380:intron | 30.0% |
| TACCCCTAACAAATTACTAA+CGG | - | chr6_4:22055958-22055977 | None:intergenic | 30.0% | |
| !!! | TTTTTGGGACTTAGTATAAG+TGG | + | chr6_4:22055986-22056005 | Msa0982380:intron | 30.0% |
| TTAATAGTATCTCTTGGTAG+TGG | - | chr6_4:22056133-22056152 | None:intergenic | 30.0% | |
| ACTACCAAGAGATACTATTA+AGG | + | chr6_4:22056132-22056151 | Msa0982380:intron | 30.0% | |
| CAATCCTTAATAGTATCTCT+TGG | - | chr6_4:22056139-22056158 | None:intergenic | 30.0% | |
| TAAGTTGTTGGGGAATAAAA+AGG | - | chr6_4:22056192-22056211 | None:intergenic | 30.0% | |
| TAAAGTTGACTAAGTTGTTG+GGG | - | chr6_4:22056202-22056221 | None:intergenic | 30.0% | |
| AACAAAATCGCTGTAGTTAT+GGG | - | chr6_4:22056229-22056248 | None:intergenic | 30.0% | |
| TAACAAAATCGCTGTAGTTA+TGG | - | chr6_4:22056230-22056249 | None:intergenic | 30.0% | |
| TTGTCTAAGGAGTGATAAAT+TGG | - | chr6_4:22056634-22056653 | None:intergenic | 30.0% | |
| TGTATGAGATCAACAGAATT+AGG | + | chr6_4:22056866-22056885 | Msa0982380:intron | 30.0% | |
| TGAAATCCCTAAAATAAAGC+AGG | + | chr6_4:22056909-22056928 | Msa0982380:intron | 30.0% | |
| GAAATCCCTAAAATAAAGCA+GGG | + | chr6_4:22056910-22056929 | Msa0982380:intron | 30.0% | |
| GGGAGAATTAAATAATGTTG+GGG | - | chr6_4:22057002-22057021 | None:intergenic | 30.0% | |
| GAGGGAGAATTAAATAATGT+TGG | - | chr6_4:22057004-22057023 | None:intergenic | 30.0% | |
| TTATTTAATTCTCCCTCTCA+CGG | + | chr6_4:22057007-22057026 | Msa0982380:intron | 30.0% | |
| ATCATATCGTACTATGTAGT+CGG | + | chr6_4:22057195-22057214 | Msa0982380:intron | 30.0% | |
| ATCGTTGAAGAAATATGTTC+AGG | + | chr6_4:22057230-22057249 | Msa0982380:intron | 30.0% | |
| ! | GAATTTGAAAAGAAGCATGA+GGG | - | chr6_4:22057467-22057486 | None:intergenic | 30.0% |
| ! | TGAATTTGAAAAGAAGCATG+AGG | - | chr6_4:22057468-22057487 | None:intergenic | 30.0% |
| TATTACACTATCTGCTATTG+TGG | + | chr6_4:22057510-22057529 | Msa0982380:intron | 30.0% | |
| TATCTATGTCTTACGCAATA+GGG | - | chr6_4:22057967-22057986 | None:intergenic | 30.0% | |
| ! | TATGAATTTTGCAGCAGTAA+TGG | + | chr6_4:22058291-22058310 | Msa0982380:CDS | 30.0% |
| CGCATAAGCCTTTAATTAAA+GGG | + | chr6_4:22058452-22058471 | Msa0982380:intron | 30.0% | |
| GAATTAGGCCCTTTAATTAA+AGG | - | chr6_4:22058463-22058482 | None:intergenic | 30.0% | |
| !! | AAACTTACATGTTTGGTGTT+TGG | + | chr6_4:22058534-22058553 | Msa0982380:intron | 30.0% |
| AGTATGAACTGCACTATAAA+CGG | - | chr6_4:22058636-22058655 | None:intergenic | 30.0% | |
| ! | TCTTAGCTTGACGTAAAATT+AGG | - | chr6_4:22058722-22058741 | None:intergenic | 30.0% |
| ! | ATTTTCACTAACTGATCTCA+TGG | + | chr6_4:22058759-22058778 | Msa0982380:intron | 30.0% |
| TGAGATTGAATATTGGAAGA+TGG | + | chr6_4:22058861-22058880 | Msa0982380:CDS | 30.0% | |
| !! | GATTCAAAAAATGGGTTGAA+AGG | + | chr6_4:22058902-22058921 | Msa0982380:CDS | 30.0% |
| !! | AAAAAATGGGTTGAAAGGAA+TGG | + | chr6_4:22058907-22058926 | Msa0982380:CDS | 30.0% |
| TCTACAAATGAACATCAGAA+GGG | - | chr6_4:22059246-22059265 | None:intergenic | 30.0% | |
| ATCTACAAATGAACATCAGA+AGG | - | chr6_4:22059247-22059266 | None:intergenic | 30.0% | |
| ACTGTGAATTTGAGTACAAA+TGG | - | chr6_4:22059287-22059306 | None:intergenic | 30.0% | |
| ! | GAAAATTTATGATGGGATGG+GGG | - | chr6_4:22053862-22053881 | None:intergenic | 35.0% |
| ! | GGAAAATTTATGATGGGATG+GGG | - | chr6_4:22053863-22053882 | None:intergenic | 35.0% |
| ! | GGGAAAATTTATGATGGGAT+GGG | - | chr6_4:22053864-22053883 | None:intergenic | 35.0% |
| ! | TGGGAAAATTTATGATGGGA+TGG | - | chr6_4:22053865-22053884 | None:intergenic | 35.0% |
| TGGCATCCTTATTATTGAGA+AGG | + | chr6_4:22053946-22053965 | Msa0982380:CDS | 35.0% | |
| ! | TTACGTGATGATGCAACAAA+TGG | - | chr6_4:22054095-22054114 | None:intergenic | 35.0% |
| ! | ACTTCATCTTTTCTTGCTAG+TGG | - | chr6_4:22054391-22054410 | None:intergenic | 35.0% |
| GTGAAATACAAAATGTGGAG+TGG | + | chr6_4:22054409-22054428 | Msa0982380:intron | 35.0% | |
| TGTGGAGTGGAGTAAAAATT+AGG | + | chr6_4:22054422-22054441 | Msa0982380:intron | 35.0% | |
| GTGGAGTGGAGTAAAAATTA+GGG | + | chr6_4:22054423-22054442 | Msa0982380:intron | 35.0% | |
| !!! | GACATGTATTTTGAAACGGA+GGG | - | chr6_4:22055364-22055383 | None:intergenic | 35.0% |
| TAACGGTCAAAATTGTGCAT+TGG | - | chr6_4:22055183-22055202 | None:intergenic | 35.0% | |
| !!! | GACATGTATTTTGAAACGGA+GGG | + | chr6_4:22055364-22055383 | Msa0982380:intron | 35.0% |
| TTGGAATGCCCATCATTATA+TGG | - | chr6_4:22055586-22055605 | None:intergenic | 35.0% | |
| !! | TCGTTCGAAGATTTAAGTTG+AGG | - | chr6_4:22055612-22055631 | None:intergenic | 35.0% |
| AACCATTCATAGAATAGGCA+CGG | + | chr6_4:22056083-22056102 | Msa0982380:intron | 35.0% | |
| CTTGTGGAAAAACAATCTTG+TGG | - | chr6_4:22056110-22056129 | None:intergenic | 35.0% | |
| ACAAAATCGCTGTAGTTATG+GGG | - | chr6_4:22056228-22056247 | None:intergenic | 35.0% | |
| ! | ATTTTGTATGTGTTGGACAG+TGG | - | chr6_4:22056332-22056351 | None:intergenic | 35.0% |
| TTGGTCTGACCATAAAGATT+AGG | + | chr6_4:22056539-22056558 | Msa0982380:intron | 35.0% | |
| TGGTCTGACCATAAAGATTA+GGG | + | chr6_4:22056540-22056559 | Msa0982380:intron | 35.0% | |
| GATTCCATCCCTAATCTTTA+TGG | - | chr6_4:22056551-22056570 | None:intergenic | 35.0% | |
| ACATGATTGGTGTGTTTCAT+GGG | - | chr6_4:22057150-22057169 | None:intergenic | 35.0% | |
| AACATGATTGGTGTGTTTCA+TGG | - | chr6_4:22057151-22057170 | None:intergenic | 35.0% | |
| ATGACATACCTGAACATGAT+TGG | - | chr6_4:22057163-22057182 | None:intergenic | 35.0% | |
| ! | TGTTCAGGTTAGCAAAGAAA+TGG | + | chr6_4:22057245-22057264 | Msa0982380:intron | 35.0% |
| TGATGATATTATCTTGCCTC+AGG | + | chr6_4:22057413-22057432 | Msa0982380:CDS | 35.0% | |
| ! | ATTAGTTTCATGGACCAAGT+TGG | + | chr6_4:22057681-22057700 | Msa0982380:intron | 35.0% |
| TAGTTAAGAAAATTGCAGGG+TGG | - | chr6_4:22057709-22057728 | None:intergenic | 35.0% | |
| ! | CAATTTGCTCATCAATGCTT+TGG | + | chr6_4:22057860-22057879 | Msa0982380:CDS | 35.0% |
| AGACAAATGCCTATACACTA+TGG | + | chr6_4:22057908-22057927 | Msa0982380:CDS | 35.0% | |
| TTGTTAGAGCCATAGTGTAT+AGG | - | chr6_4:22057920-22057939 | None:intergenic | 35.0% | |
| ATCTATGTCTTACGCAATAG+GGG | - | chr6_4:22057966-22057985 | None:intergenic | 35.0% | |
| GTATCTATGTCTTACGCAAT+AGG | - | chr6_4:22057968-22057987 | None:intergenic | 35.0% | |
| GCTTATTCGCTTAAAATGGA+TGG | + | chr6_4:22058104-22058123 | Msa0982380:CDS | 35.0% | |
| ! | CTTGTGCAGTAACATTTTGT+GGG | + | chr6_4:22058135-22058154 | Msa0982380:CDS | 35.0% |
| ! | TTGTGCAGTAACATTTTGTG+GGG | + | chr6_4:22058136-22058155 | Msa0982380:CDS | 35.0% |
| TTATCTGTCGTAACAATGGA+TGG | + | chr6_4:22058329-22058348 | Msa0982380:CDS | 35.0% | |
| TATCTGTCGTAACAATGGAT+GGG | + | chr6_4:22058330-22058349 | Msa0982380:CDS | 35.0% | |
| ACTTCGAAATTGTTCTTCGA+CGG | - | chr6_4:22058368-22058387 | None:intergenic | 35.0% | |
| GCGCATAAGCCTTTAATTAA+AGG | + | chr6_4:22058451-22058470 | Msa0982380:intron | 35.0% | |
| !! | TACATGTTTGGTGTTTGGTT+AGG | + | chr6_4:22058539-22058558 | Msa0982380:intron | 35.0% |
| AAGGTCAAGCTTATGGAATA+TGG | + | chr6_4:22058579-22058598 | Msa0982380:CDS | 35.0% | |
| AATCATACCTCGATTAAGAC+TGG | - | chr6_4:22058689-22058708 | None:intergenic | 35.0% | |
| TCTGTACTTGGTTGAATCAT+CGG | - | chr6_4:22058833-22058852 | None:intergenic | 35.0% | |
| TGTCAAAACTCAAAACAGGT+TGG | - | chr6_4:22059052-22059071 | None:intergenic | 35.0% | |
| GTTAATGCATGCTATTCAAG+TGG | + | chr6_4:22059096-22059115 | Msa0982380:intron | 35.0% | |
| CAAACTTTCATCAAACCTTG+AGG | + | chr6_4:22059171-22059190 | Msa0982380:CDS | 35.0% | |
| ACATCAGAAGGGTAATCTTT+GGG | - | chr6_4:22059235-22059254 | None:intergenic | 35.0% | |
| AACATCAGAAGGGTAATCTT+TGG | - | chr6_4:22059236-22059255 | None:intergenic | 35.0% | |
| CCTGGACCTTCTCAATAATA+AGG | - | chr6_4:22053955-22053974 | None:intergenic | 40.0% | |
| CCTTATTATTGAGAAGGTCC+AGG | + | chr6_4:22053952-22053971 | Msa0982380:CDS | 40.0% | |
| TGCAATTCTTCACTCCCTAT+AGG | - | chr6_4:22054250-22054269 | None:intergenic | 40.0% | |
| !! | GTCATCGATGTTTTGTTCAG+AGG | - | chr6_4:22054945-22054964 | None:intergenic | 40.0% |
| !!! | GGACATGTATTTTGAAACGG+AGG | - | chr6_4:22055363-22055382 | None:intergenic | 40.0% |
| CATATGTGAAGTGGTTGACT+TGG | - | chr6_4:22055160-22055179 | None:intergenic | 40.0% | |
| !!! | GGACATGTATTTTGAAACGG+AGG | + | chr6_4:22055363-22055382 | Msa0982380:intron | 40.0% |
| TCCAATTCAAGACGTGAACA+AGG | + | chr6_4:22055465-22055484 | Msa0982380:intron | 40.0% | |
| ACCTTGTTCACGTCTTGAAT+TGG | - | chr6_4:22055469-22055488 | None:intergenic | 40.0% | |
| TCCTTTCTTTCACAAAGTCG+AGG | + | chr6_4:22056435-22056454 | Msa0982380:intron | 40.0% | |
| ! | GAAGGTTGGTTCAACTAGTT+AGG | + | chr6_4:22056470-22056489 | Msa0982380:intron | 40.0% |
| ATGTGTATTCAACTCCCTTG+AGG | + | chr6_4:22056515-22056534 | Msa0982380:intron | 40.0% | |
| TATTCAACTCCCTTGAGGTT+TGG | + | chr6_4:22056520-22056539 | Msa0982380:intron | 40.0% | |
| CTGACCATAAAGATTAGGGA+TGG | + | chr6_4:22056544-22056563 | Msa0982380:intron | 40.0% | |
| ATCCCTAAAATAAAGCAGGG+TGG | + | chr6_4:22056913-22056932 | Msa0982380:intron | 40.0% | |
| !!! | AGCCACCCTGCTTTATTTTA+GGG | - | chr6_4:22056918-22056937 | None:intergenic | 40.0% |
| !!! | AAGCCACCCTGCTTTATTTT+AGG | - | chr6_4:22056919-22056938 | None:intergenic | 40.0% |
| !!! | CTTCAGTTCATCGATTTTCC+TGG | + | chr6_4:22057030-22057049 | Msa0982380:intron | 40.0% |
| !!! | AGTTCATCGATTTTCCTGGA+GGG | + | chr6_4:22057034-22057053 | Msa0982380:intron | 40.0% |
| GAAACACACCAATCATGTTC+AGG | + | chr6_4:22057152-22057171 | Msa0982380:CDS | 40.0% | |
| TTAGCAAAGAAATGGCTGTG+AGG | + | chr6_4:22057253-22057272 | Msa0982380:CDS | 40.0% | |
| ! | TGTGAGGATGTATTCTGAGA+TGG | + | chr6_4:22057269-22057288 | Msa0982380:CDS | 40.0% |
| GATGGTCACTCTTCAAACTA+TGG | + | chr6_4:22057287-22057306 | Msa0982380:CDS | 40.0% | |
| TATGGACAGCATATTCTACG+AGG | + | chr6_4:22057305-22057324 | Msa0982380:CDS | 40.0% | |
| ACGAGACTGTGAAGTAATTG+TGG | - | chr6_4:22057943-22057962 | None:intergenic | 40.0% | |
| CGCTGCTTATTCGCTTAAAA+TGG | + | chr6_4:22058100-22058119 | Msa0982380:CDS | 40.0% | |
| ! | GCTTGTGCAGTAACATTTTG+TGG | + | chr6_4:22058134-22058153 | Msa0982380:CDS | 40.0% |
| CTGCAAAATTCATACCAGCA+TGG | - | chr6_4:22058285-22058304 | None:intergenic | 40.0% | |
| ! | GAATTTTGCAGCAGTAATGG+AGG | + | chr6_4:22058294-22058313 | Msa0982380:CDS | 40.0% |
| TTCGAAATTGTTCTTCGACG+GGG | - | chr6_4:22058366-22058385 | None:intergenic | 40.0% | |
| CTTCGAAATTGTTCTTCGAC+GGG | - | chr6_4:22058367-22058386 | None:intergenic | 40.0% | |
| !! | TTTGGTGTTTGGTTAGGTGA+TGG | + | chr6_4:22058545-22058564 | Msa0982380:intron | 40.0% |
| ! | TTGGTTAGGTGATGGTATTG+TGG | + | chr6_4:22058553-22058572 | Msa0982380:intron | 40.0% |
| ! | ATATGGAGTATCCGAGTAGA+TGG | + | chr6_4:22058596-22058615 | Msa0982380:CDS | 40.0% |
| GTGCATCATTTCCATCTACT+CGG | - | chr6_4:22058610-22058629 | None:intergenic | 40.0% | |
| TCTCATGGTGAATGATGTTC+AGG | + | chr6_4:22058774-22058793 | Msa0982380:intron | 40.0% | |
| CAGGCTCTTAGTTATAGAGT+AGG | + | chr6_4:22058793-22058812 | Msa0982380:intron | 40.0% | |
| TTGAATCATCGGATGTAGAG+TGG | - | chr6_4:22058822-22058841 | None:intergenic | 40.0% | |
| ! | CTCATCAATTGGTCTGTACT+TGG | - | chr6_4:22058845-22058864 | None:intergenic | 40.0% |
| !! | AATGGGTTGAAAGGAATGGT+TGG | + | chr6_4:22058911-22058930 | Msa0982380:CDS | 40.0% |
| TGGAGCTTAGAAGCAATGTA+AGG | + | chr6_4:22058953-22058972 | Msa0982380:CDS | 40.0% | |
| TAGAAGCAATGTAAGGAAGC+AGG | + | chr6_4:22058960-22058979 | Msa0982380:CDS | 40.0% | |
| TCAGTAAACATGTCCTCAAG+TGG | - | chr6_4:22059142-22059161 | None:intergenic | 40.0% | |
| GTTCTCTTTCTTGTTCCTCA+AGG | - | chr6_4:22059189-22059208 | None:intergenic | 40.0% | |
| ! | TTATGATGGGATGGGGGAAA+AGG | - | chr6_4:22053856-22053875 | None:intergenic | 45.0% |
| GTGATTAGGAACTAAGGTCC+TGG | - | chr6_4:22053973-22053992 | None:intergenic | 45.0% | |
| ! | GTGCTGGTGATTAGGAACTA+AGG | - | chr6_4:22053979-22053998 | None:intergenic | 45.0% |
| !! | CTTTGAAGGTGCTGGTGATT+AGG | - | chr6_4:22053987-22054006 | None:intergenic | 45.0% |
| AGCTAGCCAGCTTACTTTGA+AGG | - | chr6_4:22054001-22054020 | None:intergenic | 45.0% | |
| !! | AAGCTGGCTAGCTTGTTACT+AGG | + | chr6_4:22054008-22054027 | Msa0982380:CDS | 45.0% |
| !! | GCTAGCTTGTTACTAGGATC+AGG | + | chr6_4:22054014-22054033 | Msa0982380:CDS | 45.0% |
| ! | GAAAGGTGTGAGAAGAAGAG+TGG | - | chr6_4:22054058-22054077 | None:intergenic | 45.0% |
| TGGCTGAGAAGAAGATCGAA+AGG | - | chr6_4:22054075-22054094 | None:intergenic | 45.0% | |
| ATCCAACTGTGCATGTGCTT+TGG | - | chr6_4:22054126-22054145 | None:intergenic | 45.0% | |
| GATCATCATGGTCATCATCG+TGG | - | chr6_4:22054163-22054182 | None:intergenic | 45.0% | |
| CGATGATGACCATGATGATC+AGG | + | chr6_4:22054163-22054182 | Msa0982380:CDS | 45.0% | |
| GTGCATGTACCTGATCATCA+TGG | - | chr6_4:22054175-22054194 | None:intergenic | 45.0% | |
| TATCTCATCTTATTCGCCGC+TGG | + | chr6_4:22054338-22054357 | Msa0982380:intron | 45.0% | |
| ! | GTGCATTGGCATATGTGAAG+TGG | - | chr6_4:22055169-22055188 | None:intergenic | 45.0% |
| ! | AAGGGTCGTAGCGTTCTTTT+TGG | + | chr6_4:22055509-22055528 | Msa0982380:intron | 45.0% |
| GTCCGTGCCTATTCTATGAA+TGG | - | chr6_4:22056088-22056107 | None:intergenic | 45.0% | |
| !! | TATCTCTTGGTAGTGGCTTG+TGG | - | chr6_4:22056126-22056145 | None:intergenic | 45.0% |
| GCCTCGACTTTGTGAAAGAA+AGG | - | chr6_4:22056439-22056458 | None:intergenic | 45.0% | |
| ATGGTCAGACCAAACCTCAA+GGG | - | chr6_4:22056532-22056551 | None:intergenic | 45.0% | |
| TATGGTCAGACCAAACCTCA+AGG | - | chr6_4:22056533-22056552 | None:intergenic | 45.0% | |
| !!! | CAGTTCATCGATTTTCCTGG+AGG | + | chr6_4:22057033-22057052 | Msa0982380:intron | 45.0% |
| ! | GATTTTCCTGGAGGGAAAGT+TGG | + | chr6_4:22057042-22057061 | Msa0982380:CDS | 45.0% |
| TATCGAGTCCTCGATGAAGA+TGG | + | chr6_4:22057120-22057139 | Msa0982380:CDS | 45.0% | |
| GCATATTCTACGAGGTACAG+AGG | + | chr6_4:22057313-22057332 | Msa0982380:CDS | 45.0% | |
| TTCCTTCTACCTCACCTCAA+TGG | + | chr6_4:22057347-22057366 | Msa0982380:CDS | 45.0% | |
| TCCTTCTACCTCACCTCAAT+GGG | + | chr6_4:22057348-22057367 | Msa0982380:CDS | 45.0% | |
| AACTGCTTCTTCTCCCATTG+AGG | - | chr6_4:22057364-22057383 | None:intergenic | 45.0% | |
| GAGGGAATTTCAATGCCTTG+CGG | - | chr6_4:22057449-22057468 | None:intergenic | 45.0% | |
| ACACAACTTCCTCAAGCTGT+AGG | + | chr6_4:22058077-22058096 | Msa0982380:CDS | 45.0% | |
| ! | GCAGTAACATTTTGTGGGGA+TGG | + | chr6_4:22058140-22058159 | Msa0982380:CDS | 45.0% |
| ! | GTAACATTTTGTGGGGATGG+AGG | + | chr6_4:22058143-22058162 | Msa0982380:CDS | 45.0% |
| TTGTAGGGAGATTTCCATGC+TGG | + | chr6_4:22058268-22058287 | Msa0982380:intron | 45.0% | |
| TCGAAATTGTTCTTCGACGG+GGG | - | chr6_4:22058365-22058384 | None:intergenic | 45.0% | |
| ! | GGTGATGGTATTGTGGTGAA+AGG | + | chr6_4:22058560-22058579 | Msa0982380:intron | 45.0% |
| GTGGTGAAAGGTCAAGCTTA+TGG | + | chr6_4:22058572-22058591 | Msa0982380:CDS | 45.0% | |
| GCAAAGACCAGTCTTAATCG+AGG | + | chr6_4:22058679-22058698 | Msa0982380:CDS | 45.0% | |
| GTGGAGTGACAAGGATGAAT+TGG | + | chr6_4:22058933-22058952 | Msa0982380:CDS | 45.0% | |
| AGCACAAAAACCTCCACTTG+AGG | + | chr6_4:22059126-22059145 | Msa0982380:CDS | 45.0% | |
| GTAAACATGTCCTCAAGTGG+AGG | - | chr6_4:22059139-22059158 | None:intergenic | 45.0% | |
| TTGTCTCGACAGCAAAGACG+TGG | - | chr6_4:22053780-22053799 | None:intergenic | 50.0% | |
| ! | CCAGCTTACTTTGAAGGTGC+TGG | - | chr6_4:22053995-22054014 | None:intergenic | 50.0% |
| CCAGCACCTTCAAAGTAAGC+TGG | + | chr6_4:22053992-22054011 | Msa0982380:CDS | 50.0% | |
| AGGTGTGAGAAGAAGAGTGG+TGG | - | chr6_4:22054055-22054074 | None:intergenic | 50.0% | |
| CAACTGTGCATGTGCTTTGG+TGG | - | chr6_4:22054123-22054142 | None:intergenic | 50.0% | |
| CACCAAAGCACATGCACAGT+TGG | + | chr6_4:22054121-22054140 | Msa0982380:CDS | 50.0% | |
| TCTTGCTAGTGGCTAGAGAC+CGG | - | chr6_4:22054380-22054399 | None:intergenic | 50.0% | |
| TCACAAAGTCGAGGCAACCT+CGG | + | chr6_4:22056444-22056463 | Msa0982380:intron | 50.0% | |
| TTGAACCAACCTTCATGCCG+AGG | - | chr6_4:22056464-22056483 | None:intergenic | 50.0% | |
| GATGAACTGAAGCCGTGAGA+GGG | - | chr6_4:22057022-22057041 | None:intergenic | 50.0% | |
| GTGAATCCAACTTTCCCTCC+AGG | - | chr6_4:22057051-22057070 | None:intergenic | 50.0% | |
| TCATCGAGGACTCGATAGCA+AGG | - | chr6_4:22057117-22057136 | None:intergenic | 50.0% | |
| TTCTACGAGGTACAGAGGCA+AGG | + | chr6_4:22057318-22057337 | Msa0982380:CDS | 50.0% | |
| TCCCATTGAGGTGAGGTAGA+AGG | - | chr6_4:22057352-22057371 | None:intergenic | 50.0% | |
| CTTCTTCTCCCATTGAGGTG+AGG | - | chr6_4:22057359-22057378 | None:intergenic | 50.0% | |
| ATAGCAGAACTCCAGGCTCA+CGG | - | chr6_4:22057820-22057839 | None:intergenic | 50.0% | |
| GGGTTGAAAGGAATGGTTGG+TGG | + | chr6_4:22058914-22058933 | Msa0982380:CDS | 50.0% | |
| !! | GAATGGTTGGTGGAGTGACA+AGG | + | chr6_4:22058924-22058943 | Msa0982380:CDS | 50.0% |
| !! | TTCGCCGCTGGTTTGAACCT+CGG | + | chr6_4:22054350-22054369 | Msa0982380:intron | 55.0% |
| GTGTCCGAGGTTCAAACCAG+CGG | - | chr6_4:22054357-22054376 | None:intergenic | 55.0% | |
| TGGTTTGAACCTCGGACACC+CGG | + | chr6_4:22054358-22054377 | Msa0982380:intron | 55.0% | |
| CTTGCTAGTGGCTAGAGACC+GGG | - | chr6_4:22054379-22054398 | None:intergenic | 55.0% | |
| CGATGAACTGAAGCCGTGAG+AGG | - | chr6_4:22057023-22057042 | None:intergenic | 55.0% | |
| TGGGCTCACCATCTTCATCG+AGG | - | chr6_4:22057131-22057150 | None:intergenic | 55.0% | |
| TTGCGGCAGAAGCAAACCTG+AGG | - | chr6_4:22057432-22057451 | None:intergenic | 55.0% | |
| ! | TCAGGTTTGCTTCTGCCGCA+AGG | + | chr6_4:22057431-22057450 | Msa0982380:intron | 55.0% |
| ! | ATTGCAGGGTGGTGCCAACT+TGG | - | chr6_4:22057698-22057717 | None:intergenic | 55.0% |
| GTGAGCCTGGAGTTCTGCTA+TGG | + | chr6_4:22057819-22057838 | Msa0982380:CDS | 55.0% | |
| TAAGCAGCGCCTACAGCTTG+AGG | - | chr6_4:22058089-22058108 | None:intergenic | 55.0% | |
| !! | TGGGGATGGAGGTACTAGTG+AGG | + | chr6_4:22058154-22058173 | Msa0982380:CDS | 55.0% |
| TCGAGGCAACCTCGGCATGA+AGG | + | chr6_4:22056452-22056471 | Msa0982380:intron | 60.0% | |
| GGCAACCTCGGCATGAAGGT+TGG | + | chr6_4:22056456-22056475 | Msa0982380:intron | 60.0% | |
| GACTGCTAGTACCGTGAGCC+TGG | + | chr6_4:22057806-22057825 | Msa0982380:intron | 60.0% | |
| CCTGGAGTTCTGCTATGGCG+CGG | + | chr6_4:22057824-22057843 | Msa0982380:CDS | 60.0% | |
| CCGCGCCATAGCAGAACTCC+AGG | - | chr6_4:22057827-22057846 | None:intergenic | 65.0% | |
| GGCTAGAGACCGGGTGTCCG+AGG | - | chr6_4:22054370-22054389 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 22053759 | 22059439 | 22053759 | ID=Msa0982380;Name=Msa0982380 |
| chr6_4 | mRNA | 22053759 | 22059439 | 22053759 | ID=Msa0982380-mRNA-1;Parent=Msa0982380;Name=Msa0982380-mRNA-1;_AED=0.12;_eAED=0.12;_QI=186|1|1|1|1|1|9|175|474 |
| chr6_4 | exon | 22053759 | 22054184 | 22053759 | ID=Msa0982380-mRNA-1:exon:6895;Parent=Msa0982380-mRNA-1 |
| chr6_4 | exon | 22057036 | 22057173 | 22057036 | ID=Msa0982380-mRNA-1:exon:6896;Parent=Msa0982380-mRNA-1 |
| chr6_4 | exon | 22057252 | 22057434 | 22057252 | ID=Msa0982380-mRNA-1:exon:6897;Parent=Msa0982380-mRNA-1 |
| chr6_4 | exon | 22057815 | 22057972 | 22057815 | ID=Msa0982380-mRNA-1:exon:6898;Parent=Msa0982380-mRNA-1 |
| chr6_4 | exon | 22058076 | 22058175 | 22058076 | ID=Msa0982380-mRNA-1:exon:6899;Parent=Msa0982380-mRNA-1 |
| chr6_4 | exon | 22058274 | 22058385 | 22058274 | ID=Msa0982380-mRNA-1:exon:6900;Parent=Msa0982380-mRNA-1 |
| chr6_4 | exon | 22058561 | 22058700 | 22058561 | ID=Msa0982380-mRNA-1:exon:6901;Parent=Msa0982380-mRNA-1 |
| chr6_4 | exon | 22058796 | 22058981 | 22058796 | ID=Msa0982380-mRNA-1:exon:6902;Parent=Msa0982380-mRNA-1 |
| chr6_4 | exon | 22059097 | 22059439 | 22059097 | ID=Msa0982380-mRNA-1:exon:6903;Parent=Msa0982380-mRNA-1 |
| chr6_4 | five_prime_UTR | 22053759 | 22053944 | 22053759 | ID=Msa0982380-mRNA-1:five_prime_utr;Parent=Msa0982380-mRNA-1 |
| chr6_4 | CDS | 22053945 | 22054184 | 22053945 | ID=Msa0982380-mRNA-1:cds;Parent=Msa0982380-mRNA-1 |
| chr6_4 | CDS | 22057036 | 22057173 | 22057036 | ID=Msa0982380-mRNA-1:cds;Parent=Msa0982380-mRNA-1 |
| chr6_4 | CDS | 22057252 | 22057434 | 22057252 | ID=Msa0982380-mRNA-1:cds;Parent=Msa0982380-mRNA-1 |
| chr6_4 | CDS | 22057815 | 22057972 | 22057815 | ID=Msa0982380-mRNA-1:cds;Parent=Msa0982380-mRNA-1 |
| chr6_4 | CDS | 22058076 | 22058175 | 22058076 | ID=Msa0982380-mRNA-1:cds;Parent=Msa0982380-mRNA-1 |
| chr6_4 | CDS | 22058274 | 22058385 | 22058274 | ID=Msa0982380-mRNA-1:cds;Parent=Msa0982380-mRNA-1 |
| chr6_4 | CDS | 22058561 | 22058700 | 22058561 | ID=Msa0982380-mRNA-1:cds;Parent=Msa0982380-mRNA-1 |
| chr6_4 | CDS | 22058796 | 22058981 | 22058796 | ID=Msa0982380-mRNA-1:cds;Parent=Msa0982380-mRNA-1 |
| chr6_4 | CDS | 22059097 | 22059264 | 22059097 | ID=Msa0982380-mRNA-1:cds;Parent=Msa0982380-mRNA-1 |
| chr6_4 | three_prime_UTR | 22059265 | 22059439 | 22059265 | ID=Msa0982380-mRNA-1:three_prime_utr;Parent=Msa0982380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
