AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0689630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689630 MtrunA17_Chr4g0070231 97.778 405 8 1 1 405 1 404 0.0 828
Msa0689630 MtrunA17_Chr8g0344491 72.319 401 95 5 16 405 32 427 0.0 574
Msa0689630 MtrunA17_Chr3g0139111 59.322 413 143 5 18 405 28 440 2.33e-178 504
Msa0689630 MtrunA17_Chr4g0074711 28.099 363 214 9 27 359 54 399 7.01e-38 141
Msa0689630 MtrunA17_Chr2g0288251 31.353 303 179 7 46 337 59 343 1.63e-37 140
Msa0689630 MtrunA17_Chr4g0045221 30.640 297 188 8 46 328 115 407 7.01e-36 137
Msa0689630 MtrunA17_Chr2g0328791 31.922 307 190 8 46 339 14 314 1.06e-35 135
Msa0689630 MtrunA17_Chr1g0153871 29.553 291 177 7 47 328 97 368 3.88e-35 134
Msa0689630 MtrunA17_Chr1g0153871 27.513 189 111 4 40 208 183 365 1.22e-14 75.1
Msa0689630 MtrunA17_Chr3g0133651 29.766 299 181 7 40 328 86 365 3.60e-34 131
Msa0689630 MtrunA17_Chr3g0133651 25.269 186 113 4 48 213 188 367 6.98e-11 63.5
Msa0689630 MtrunA17_Chr3g0110211 33.166 199 125 4 48 241 26 221 1.97e-30 120
Msa0689630 MtrunA17_Chr3g0110211 24.623 199 109 4 135 327 28 191 9.02e-14 72.4
Msa0689630 MtrunA17_Chr6g0466501 26.568 271 157 6 48 311 26 261 1.88e-22 99.8
Msa0689630 MtrunA17_Chr6g0466501 23.630 292 187 7 48 327 114 381 1.73e-15 78.6
Msa0689630 MtrunA17_Chr6g0465751 26.199 271 158 6 48 311 26 261 2.20e-22 99.4
Msa0689630 MtrunA17_Chr6g0465751 23.630 292 187 7 48 327 114 381 2.34e-15 78.2
Msa0689630 MtrunA17_Chr1g0153181 26.333 300 191 8 39 327 112 392 2.57e-22 99.4
Msa0689630 MtrunA17_Chr1g0153181 25.321 312 186 8 11 313 1 274 7.80e-22 97.8
Msa0689630 MtrunA17_Chr3g0134141 27.863 262 147 7 45 297 22 250 1.52e-21 97.1
Msa0689630 MtrunA17_Chr3g0134141 27.273 308 191 9 32 327 97 383 6.56e-18 85.9
Msa0689630 MtrunA17_Chr4g0044541 25.733 307 197 8 32 327 107 393 1.73e-21 96.7
Msa0689630 MtrunA17_Chr4g0044541 26.071 280 165 7 48 318 35 281 2.20e-21 96.7
Msa0689630 MtrunA17_Chr7g0265341 24.606 317 182 8 20 327 58 326 3.30e-21 95.9
Msa0689630 MtrunA17_Chr7g0265341 25.667 300 192 7 39 327 150 429 6.68e-20 92.0
Msa0689630 MtrunA17_Chr3g0116631 33.140 172 103 2 49 208 111 282 7.34e-20 89.4
Msa0689630 MtrunA17_Chr6g0465631 26.333 300 176 9 39 320 7 279 4.41e-19 89.0
Msa0689630 MtrunA17_Chr6g0466451 26.333 300 176 9 39 320 7 279 4.83e-19 89.0
Msa0689630 MtrunA17_Chr1g0179701 24.910 277 165 8 48 314 63 306 1.11e-18 88.2
Msa0689630 MtrunA17_Chr1g0179701 25.256 293 180 8 48 327 151 417 1.95e-18 87.4
Msa0689630 MtrunA17_Chr1g0201151 26.374 273 159 8 48 311 31 270 1.54e-18 87.8
Msa0689630 MtrunA17_Chr1g0201151 24.161 298 186 7 39 320 110 383 1.12e-16 82.0
Msa0689630 MtrunA17_Chr4g0058151 32.353 170 104 3 49 208 124 292 1.79e-17 82.4
Msa0689630 MtrunA17_Chr0c09g0493511 23.630 292 187 7 48 327 32 299 6.50e-17 82.8
Msa0689630 MtrunA17_Chr3g0087481 29.834 181 113 2 42 208 55 235 1.34e-16 78.6
Msa0689630 MtrunA17_Chr3g0087481 28.866 194 112 3 134 323 62 233 6.57e-16 76.6
Msa0689630 MtrunA17_Chr6g0465691 23.630 292 187 7 48 327 32 299 1.55e-15 78.6
Msa0689630 MtrunA17_Chr1g0181111 28.877 187 106 2 49 208 86 272 1.13e-14 73.9
Msa0689630 MtrunA17_Chr4g0061451 42.857 77 44 0 134 210 44 120 2.45e-14 72.8
Msa0689630 MtrunA17_Chr7g0219021 40.506 79 47 0 134 212 42 120 4.36e-14 71.6
Msa0689630 MtrunA17_Chr1g0177101 25.521 192 129 3 32 209 93 284 5.36e-14 72.4
Msa0689630 MtrunA17_Chr7g0267571 25.714 210 123 6 133 331 110 297 1.19e-13 71.2
Msa0689630 MtrunA17_Chr7g0267571 24.651 215 136 4 49 245 111 317 2.17e-12 67.8
Msa0689630 MtrunA17_Chr4g0033701 25.606 289 183 9 42 319 21 288 2.56e-13 72.0
Msa0689630 MtrunA17_Chr3g0121631 44.000 75 41 1 134 208 38 111 2.91e-13 67.0
Msa0689630 MtrunA17_Chr3g0119311 41.333 75 44 0 134 208 38 112 3.79e-13 66.2
Msa0689630 MtrunA17_Chr1g0190211 37.838 74 46 0 132 205 132 205 4.96e-13 68.6
Msa0689630 MtrunA17_Chr7g0266751 38.961 77 47 0 132 208 32 108 9.81e-13 65.1
Msa0689630 MtrunA17_Chr3g0086861 40.260 77 46 0 134 210 46 122 7.47e-12 66.6
Msa0689630 MtrunA17_Chr1g0186351 26.562 192 112 5 49 213 8 197 1.43e-11 65.9
Msa0689630 MtrunA17_Chr1g0168601 30.631 111 75 1 100 208 119 229 1.76e-11 63.9
Msa0689630 MtrunA17_Chr4g0035001 38.462 78 48 0 131 208 5 82 2.83e-11 61.6
Msa0689630 MtrunA17_Chr5g0447761 27.830 212 122 8 134 338 8 195 3.68e-11 64.7
Msa0689630 MtrunA17_Chr5g0447761 26.705 176 106 5 44 198 3 176 5.80e-11 63.9
Msa0689630 MtrunA17_Chr4g0035051 35.443 79 51 0 132 210 8 86 5.44e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689630 AT1G17370.1 69.900 402 103 6 16 405 24 419 0.0 550
Msa0689630 AT3G14100.1 69.154 402 109 5 16 405 29 427 0.0 549
Msa0689630 AT1G17370.2 69.403 402 102 7 16 405 24 416 0.0 541
Msa0689630 AT1G54080.1 65.920 402 128 5 11 405 27 426 0.0 536
Msa0689630 AT1G54080.2 66.010 406 125 6 11 405 27 430 0.0 531
Msa0689630 AT5G19350.1 31.111 315 203 8 22 328 2 310 7.55e-39 144
Msa0689630 AT5G19350.2 30.476 315 201 8 22 328 2 306 1.71e-37 140
Msa0689630 AT4G27000.1 31.164 292 173 7 47 329 80 352 2.11e-36 137
Msa0689630 AT3G19130.1 29.252 294 193 7 46 329 107 395 7.10e-35 134
Msa0689630 AT1G11650.2 29.154 319 190 8 20 329 44 335 9.41e-35 133
Msa0689630 AT5G54900.1 29.836 305 185 9 35 329 49 334 2.80e-34 131
Msa0689630 AT1G49600.3 29.932 294 184 9 46 328 118 400 1.16e-32 128
Msa0689630 AT1G49600.2 29.932 294 184 9 46 328 118 400 1.16e-32 128
Msa0689630 AT1G49600.1 29.932 294 184 9 46 328 118 400 1.42e-32 127
Msa0689630 AT1G47490.1 30.612 294 175 9 47 328 101 377 7.21e-31 123
Msa0689630 AT1G47490.1 25.532 188 112 5 48 213 198 379 1.23e-11 66.6
Msa0689630 AT1G11650.1 28.819 288 169 8 20 298 44 304 8.64e-30 117
Msa0689630 AT2G18510.1 33.166 199 125 4 48 241 26 221 1.68e-28 115
Msa0689630 AT1G47500.1 30.272 294 176 10 47 328 103 379 2.97e-28 115
Msa0689630 AT1G47500.1 26.064 188 111 4 48 213 200 381 9.02e-12 67.0
Msa0689630 AT3G16380.1 28.114 281 175 6 48 320 113 374 3.80e-25 107
Msa0689630 AT3G16380.1 27.211 294 158 10 48 321 22 279 5.31e-18 86.3
Msa0689630 AT1G49760.1 27.907 301 184 9 39 327 125 404 1.17e-24 106
Msa0689630 AT1G49760.1 27.273 275 158 7 48 313 46 287 4.89e-21 95.9
Msa0689630 AT1G49760.2 27.907 301 184 9 39 327 125 404 1.17e-24 106
Msa0689630 AT1G49760.2 27.273 275 158 7 48 313 46 287 4.89e-21 95.9
Msa0689630 AT2G23350.1 29.210 291 175 8 48 327 135 405 4.00e-24 105
Msa0689630 AT2G23350.1 26.182 275 161 7 48 313 47 288 1.75e-18 88.2
Msa0689630 AT2G23350.1 25.668 187 120 4 42 210 220 405 4.05e-13 71.6
Msa0689630 AT1G71770.1 27.574 272 158 7 48 311 60 300 1.01e-23 103
Msa0689630 AT1G71770.1 27.893 337 199 10 32 343 131 448 4.69e-21 95.9
Msa0689630 AT1G71770.2 27.574 272 158 7 48 311 60 300 1.01e-23 103
Msa0689630 AT1G71770.2 27.893 337 199 10 32 343 131 448 4.69e-21 95.9
Msa0689630 AT4G34110.1 26.333 300 190 7 39 327 116 395 1.80e-23 103
Msa0689630 AT4G34110.1 28.205 273 154 7 48 311 37 276 3.97e-22 99.0
Msa0689630 AT1G34140.1 28.169 284 181 6 48 325 32 298 3.29e-23 100
Msa0689630 AT1G22760.1 26.471 272 161 7 48 311 50 290 4.07e-23 102
Msa0689630 AT1G22760.1 25.962 312 192 6 32 327 121 409 1.02e-18 89.0
Msa0689630 AT1G47490.2 33.714 175 104 6 47 209 101 275 3.02e-22 96.7
Msa0689630 AT4G24770.1 33.333 171 105 2 49 210 152 322 4.02e-21 94.0
Msa0689630 AT4G24770.2 33.333 171 105 2 49 210 152 322 4.02e-21 94.0
Msa0689630 AT1G47500.2 33.714 175 104 6 47 209 103 277 1.44e-20 92.0
Msa0689630 AT5G50250.1 34.911 169 101 2 49 208 115 283 1.64e-20 91.3
Msa0689630 AT2G36660.1 25.260 289 187 7 48 327 113 381 5.06e-19 89.7
Msa0689630 AT2G36660.1 24.176 273 163 6 48 311 25 262 7.49e-18 85.9
Msa0689630 AT2G37220.1 31.383 188 101 3 49 208 93 280 1.68e-18 85.5
Msa0689630 AT3G52150.2 29.630 189 115 4 38 208 65 253 3.35e-16 78.2
Msa0689630 AT3G52150.2 29.231 195 114 6 133 323 77 251 7.75e-15 74.3
Msa0689630 AT3G52150.1 29.630 189 115 4 38 208 65 253 3.35e-16 78.2
Msa0689630 AT3G52150.1 29.231 195 114 6 133 323 77 251 7.75e-15 74.3
Msa0689630 AT1G60000.1 30.208 192 116 4 22 208 75 253 3.76e-16 78.2
Msa0689630 AT3G23830.2 46.154 78 42 0 133 210 36 113 8.62e-16 74.3
Msa0689630 AT3G23830.1 46.154 78 42 0 133 210 36 113 8.62e-16 74.3
Msa0689630 AT4G13860.1 45.714 70 38 0 134 203 5 74 3.89e-15 70.9
Msa0689630 AT4G13850.3 45.205 73 40 0 134 206 37 109 1.49e-14 70.9
Msa0689630 AT4G13850.2 45.205 73 40 0 134 206 37 109 1.83e-14 70.9
Msa0689630 AT4G13850.1 45.205 73 40 0 134 206 37 109 2.05e-14 70.9
Msa0689630 AT4G13850.4 45.333 75 41 0 134 208 37 111 2.40e-14 70.1
Msa0689630 AT3G52380.1 26.111 180 115 3 49 210 118 297 4.74e-14 73.2
Msa0689630 AT5G04280.1 41.111 90 52 1 133 221 8 97 3.06e-13 70.5
Msa0689630 AT3G53460.1 44.737 76 42 0 133 208 258 333 1.04e-12 69.3
Msa0689630 AT3G53460.3 44.737 76 42 0 133 208 258 333 1.04e-12 69.3
Msa0689630 AT3G53460.2 44.737 76 42 0 133 208 258 333 1.04e-12 69.3
Msa0689630 AT2G33410.1 30.857 175 94 5 49 198 8 180 1.11e-12 69.7
Msa0689630 AT3G04500.1 32.632 95 61 1 132 223 137 231 1.16e-12 67.8
Msa0689630 AT3G53460.4 44.737 76 42 0 133 208 279 354 1.41e-12 68.9
Msa0689630 AT1G74230.1 44.156 77 42 1 134 210 36 111 2.39e-12 67.4
Msa0689630 AT5G61030.2 39.474 76 46 0 133 208 41 116 3.23e-12 67.4
Msa0689630 AT5G61030.1 39.474 76 46 0 133 208 41 116 3.23e-12 67.4
Msa0689630 AT4G39260.3 36.047 86 54 1 132 216 6 91 3.24e-12 62.8
Msa0689630 AT2G43410.4 24.870 193 110 7 46 209 94 280 5.76e-12 68.2
Msa0689630 AT2G43410.3 24.870 193 110 7 46 209 94 280 5.76e-12 68.2
Msa0689630 AT2G43410.2 24.870 193 110 7 46 209 94 280 5.76e-12 68.2
Msa0689630 AT4G39260.2 37.662 77 48 0 132 208 6 82 5.91e-12 63.2
Msa0689630 AT3G08000.1 37.662 77 48 0 134 210 43 119 1.39e-11 62.4
Msa0689630 AT4G39260.1 36.842 76 48 0 131 206 5 80 4.23e-11 61.6
Msa0689630 AT2G21660.2 36.842 76 48 0 131 206 7 82 4.46e-11 61.6
Msa0689630 AT4G14300.1 28.000 175 99 5 49 198 8 180 5.06e-11 64.3
Msa0689630 AT4G14300.2 28.000 175 99 5 49 198 8 180 5.06e-11 64.3
Msa0689630 AT2G21660.1 36.842 76 48 0 131 206 7 82 6.18e-11 61.6
Msa0689630 AT5G47320.1 40.000 75 45 0 134 208 33 107 7.98e-11 62.0

Find 170 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTACCAGTTAAATCGTTTA+TGG 0.111838 4_4:+56800398 None:intergenic
TGTATTACTACATTTAAATA+AGG 0.191590 4_4:-56798050 Msa0689630:three_prime_UTR
TTTCTGATACTTCAGGTAAA+TGG 0.225225 4_4:-56799878 Msa0689630:intron
GTGGCAACATCTTCAGTTCT+AGG 0.231542 4_4:+56802876 None:intergenic
GTGTAAGCTCTTTGTGAATA+AGG 0.248325 4_4:-56797911 Msa0689630:three_prime_UTR
GCCATGGGAATGGGTGCTCT+TGG 0.248648 4_4:-56798305 Msa0689630:CDS
CCATGGGAATGGGTGCTCTT+GGG 0.253064 4_4:-56798304 Msa0689630:CDS
GGCAGTCTATCAAAGTTAAC+TGG 0.257739 4_4:-56800982 Msa0689630:CDS
TGAGCCAGGATTTAGGTATT+TGG 0.260360 4_4:-56797950 Msa0689630:three_prime_UTR
GTGCTCTTGGGGCTGGGTAC+GGG 0.261923 4_4:-56798292 Msa0689630:CDS
TCCCATGGCTGCCCGCTTTA+CGG 0.262872 4_4:+56798319 None:intergenic
GGAATGGGTGCTCTTGGGGC+TGG 0.265291 4_4:-56798299 Msa0689630:CDS
AGTTAACTCCACAACACTTT+TGG 0.276006 4_4:+56799779 None:intergenic
GATGATACAGAATTGTTGTT+AGG 0.282363 4_4:+56803066 None:intergenic
ATATTACTGAGCCAGGATTT+AGG 0.288701 4_4:-56797957 Msa0689630:three_prime_UTR
GTGCAACGAGACAAAAGTTT+TGG 0.288822 4_4:-56798913 Msa0689630:CDS
GTAGACAGATCCGTTGTAAT+TGG 0.289688 4_4:-56799848 Msa0689630:CDS
CCCTAGATCGGCCTGTCTTC+TGG 0.289831 4_4:+56800577 None:intergenic
ACATCTTCAGTTCTAGGGTT+AGG 0.304136 4_4:+56802882 None:intergenic
GGTGCTCTTGGGGCTGGGTA+CGG 0.320968 4_4:-56798293 Msa0689630:CDS
TGCTGAGTGGTGGCAACATT+AGG 0.328886 4_4:+56798260 None:intergenic
ATAAACACATCCTTTGTCAT+AGG 0.331362 4_4:+56798206 None:intergenic
ATTTGGTTAGGTAAGGGATA+TGG 0.334230 4_4:-56797933 Msa0689630:three_prime_UTR
TTGGAACTATTGAAGATGTT+AGG 0.337285 4_4:-56798936 Msa0689630:CDS
AGAGGAGTAGAGGCTGTTCC+TGG 0.344903 4_4:+56798446 None:intergenic
TGCTCTTGGGGCTGGGTACG+GGG 0.349762 4_4:-56798291 Msa0689630:CDS
TAAATCGTTTATGGCACTTT+GGG 0.357578 4_4:+56800407 None:intergenic
AGATGTTGCCACAGAAGTTT+AGG 0.367616 4_4:-56802865 Msa0689630:CDS
GGCAATGCTCGGTTTCTGTT+TGG 0.367861 4_4:-56798841 Msa0689630:CDS
AGTTGGCCATTTACCTTGAT+AGG 0.368076 4_4:+56798814 None:intergenic
TCAAGTGCTGGTGCCCTTGA+AGG 0.378286 4_4:-56801403 Msa0689630:CDS
CATGGGAATGGGTGCTCTTG+GGG 0.379768 4_4:-56798303 Msa0689630:CDS
CTTGGGGCTGGGTACGGGGC+AGG 0.383014 4_4:-56798287 Msa0689630:CDS
GTATTACTACATTTAAATAA+GGG 0.383143 4_4:-56798049 Msa0689630:three_prime_UTR
GAATGGGTGCTCTTGGGGCT+GGG 0.388523 4_4:-56798298 Msa0689630:CDS
GTTTGGAGAGGTAATAGAAA+TGG 0.392212 4_4:+56802905 None:intergenic
CATCTTCAGTTCTAGGGTTA+GGG 0.396307 4_4:+56802883 None:intergenic
TCAGTTCTAGGGTTAGGGTT+TGG 0.405769 4_4:+56802888 None:intergenic
TTTAGGTATTTGGTTAGGTA+AGG 0.406906 4_4:-56797940 Msa0689630:three_prime_UTR
GAATAAGCTTGCACCCTTCA+AGG 0.408901 4_4:+56801389 None:intergenic
TGTAAGCTCTTTGTGAATAA+GGG 0.413107 4_4:-56797910 Msa0689630:three_prime_UTR
ACCAGAAGACAGGCCGATCT+AGG 0.413231 4_4:-56800578 Msa0689630:CDS
GCTGAGTGGTGGCAACATTA+GGG 0.418535 4_4:+56798261 None:intergenic
CAGGATTTAGGTATTTGGTT+AGG 0.428437 4_4:-56797945 Msa0689630:three_prime_UTR
TCTGTTTGGCAAACCTATCA+AGG 0.428539 4_4:-56798827 Msa0689630:intron
TGCCGTAAAGCGGGCAGCCA+TGG 0.435035 4_4:-56798321 Msa0689630:CDS
AGTGCCATAAACGATTTAAC+TGG 0.439194 4_4:-56800402 Msa0689630:intron
ATGATACAGAATTGTTGTTA+GGG 0.445579 4_4:+56803067 None:intergenic
TCTTCCTCACCCTCTCTTCG+AGG 0.453680 4_4:-56803016 Msa0689630:five_prime_UTR
TGTCGGCAACATTCATCCTC+AGG 0.453788 4_4:-56801455 Msa0689630:CDS
TTAAATCGTTTATGGCACTT+TGG 0.455208 4_4:+56800406 None:intergenic
CTTCCTCACCCTCTCTTCGA+GGG 0.457725 4_4:-56803015 Msa0689630:five_prime_UTR
TAGACAGATCCGTTGTAATT+GGG 0.464335 4_4:-56799847 Msa0689630:CDS
AGTAGTAGTATAGTATTAAA+CGG 0.464823 4_4:-56803115 Msa0689630:five_prime_UTR
TGTCATCTGCAGTCATCATA+TGG 0.465231 4_4:-56801154 Msa0689630:intron
CGTTGTAATTGGGCCACAAA+AGG 0.466676 4_4:-56799837 Msa0689630:CDS
CATCCTTTGTCATAGGGGAT+TGG 0.468207 4_4:+56798213 None:intergenic
GTATATTGAGGATTCTTCTC+AGG 0.470583 4_4:+56799281 None:intergenic
TCTACGCATGTACCAGTGCC+AGG 0.473075 4_4:-56798410 Msa0689630:CDS
TTTGGAGAGGTAATAGAAAT+GGG 0.474414 4_4:+56802906 None:intergenic
GATACTTCAGGTAAATGGCT+TGG 0.477931 4_4:-56799873 Msa0689630:intron
AAGCGGGCAGCCATGGGAAT+GGG 0.480383 4_4:-56798314 Msa0689630:CDS
TCATTATATATTACTGAGCC+AGG 0.481347 4_4:-56797964 Msa0689630:three_prime_UTR
AAAGCGGGCAGCCATGGGAA+TGG 0.483227 4_4:-56798315 Msa0689630:CDS
CATCTGTAACCTCGGGACTA+AGG 0.485132 4_4:+56800809 None:intergenic
TGAAATTTGCATACAGATGA+GGG 0.486100 4_4:-56797879 Msa0689630:three_prime_UTR
CAGCCCTAAAAGAGTGCCCT+GGG 0.490595 4_4:+56798009 None:intergenic
ATTGCTATTGTGACTCTCAA+TGG 0.491515 4_4:-56801097 Msa0689630:CDS
GATTAATAAGAGCAGGGTGT+TGG 0.494163 4_4:+56802810 None:intergenic
CAGAGTTGCATCTGTAACCT+CGG 0.497849 4_4:+56800801 None:intergenic
AGTTTATTGAGCCGCTAGAA+TGG 0.497991 4_4:-56798173 Msa0689630:three_prime_UTR
CCAGAAGACAGGCCGATCTA+GGG 0.498360 4_4:-56800577 Msa0689630:CDS
CAAGTGCTGGTGCCCTTGAA+GGG 0.498365 4_4:-56801402 Msa0689630:CDS
TTGAAAACAGCTCTTGAAGT+AGG 0.498626 4_4:+56801422 None:intergenic
GGCAGATTTCCACTCAAGAT+AGG 0.499163 4_4:+56802113 None:intergenic
TGAAAACAGCTCTTGAAGTA+GGG 0.501288 4_4:+56801423 None:intergenic
TTGCTATTGTGACTCTCAAT+GGG 0.502486 4_4:-56801096 Msa0689630:CDS
TGCTCTTATTAATCCTCCAC+AGG 0.502530 4_4:-56802801 Msa0689630:intron
TAAACACATCCTTTGTCATA+GGG 0.505368 4_4:+56798207 None:intergenic
GGTAGCAAGCCTACTCCTCC+AGG 0.506780 4_4:-56798464 Msa0689630:CDS
TGTGGAGGATTAATAAGAGC+AGG 0.507159 4_4:+56802803 None:intergenic
AAAAGACAGACAATAGAAAG+AGG 0.507207 4_4:+56803038 None:intergenic
TGGCAACATCTTCAGTTCTA+GGG 0.507895 4_4:+56802877 None:intergenic
GAGGCTGTTCCTGGAGGAGT+AGG 0.509965 4_4:+56798455 None:intergenic
TTGAAATTTGCATACAGATG+AGG 0.511061 4_4:-56797880 Msa0689630:three_prime_UTR
CAAGCTTATTCGAAAAGAAA+AGG 0.511179 4_4:-56801377 Msa0689630:intron
CAATATACCACTGTTTATGT+TGG 0.511712 4_4:-56799266 Msa0689630:CDS
CTTCTCAGGACTGTCATCAC+TGG 0.513827 4_4:+56799295 None:intergenic
GTAATGTGGGACCAGAAGAC+AGG 0.513950 4_4:-56800588 Msa0689630:CDS
CAAGTACTCGAATCAAAGCC+AGG 0.514270 4_4:+56802089 None:intergenic
TTGAGTGGAAATCTGCCTCC+TGG 0.517070 4_4:-56802107 Msa0689630:CDS
ACAGCCCTAAAAGAGTGCCC+TGG 0.517590 4_4:+56798008 None:intergenic
AAAGAGAAAAGAAAATAAGA+AGG 0.517982 4_4:+56802947 None:intergenic
CTAACCAAATACCTAAATCC+TGG 0.519159 4_4:+56797946 None:intergenic
TGAGGCACATGCCGTAAAGC+GGG 0.519673 4_4:-56798330 Msa0689630:CDS
ATAGAAAATAGTACAACAAA+GGG 0.520818 4_4:+56798116 None:intergenic
TAGCAAGAGCTGCTTCATCA+TGG 0.522638 4_4:+56798872 None:intergenic
GTAGAAGCTGGTGGTGGAAG+AGG 0.523058 4_4:+56798428 None:intergenic
CAGAAGACAGGCCGATCTAG+GGG 0.524639 4_4:-56800576 Msa0689630:CDS
GAGTTAACTAGTGGAACATC+TGG 0.525972 4_4:-56799765 Msa0689630:intron
AATAAGCTTGCACCCTTCAA+GGG 0.526793 4_4:+56801390 None:intergenic
TCATACAATGCAAGACCGGC+AGG 0.531526 4_4:+56798380 None:intergenic
GGCTTTGAGCAAAATGAATG+AGG 0.532599 4_4:-56798348 Msa0689630:CDS
GCCGTAAAGCGGGCAGCCAT+GGG 0.532748 4_4:-56798320 Msa0689630:CDS
GCAGGTGAAAACCCTGGCAC+TGG 0.532863 4_4:+56798398 None:intergenic
CTATACAGATGGGCAATGCT+CGG 0.533465 4_4:-56798852 Msa0689630:CDS
GCAGTCATCATATGGCTTCG+TGG 0.534797 4_4:-56801146 Msa0689630:intron
CGAGGGCATGAAAATGATGA+TGG 0.536381 4_4:+56798962 None:intergenic
AAGCATAAAGAAACTACAAA+AGG 0.536917 4_4:+56798081 None:intergenic
TGGAACTATTGAAGATGTTA+GGG 0.538403 4_4:-56798935 Msa0689630:CDS
CCCAAGAGCACCCATTCCCA+TGG 0.540481 4_4:+56798304 None:intergenic
ACAAAAGGAGCTAATATCAA+TGG 0.540541 4_4:-56799822 Msa0689630:CDS
TTAGGTATTTGGTTAGGTAA+GGG 0.541014 4_4:-56797939 Msa0689630:three_prime_UTR
AGCAGCTCTTGCTATACAGA+TGG 0.541414 4_4:-56798863 Msa0689630:CDS
TTGGGGAAATGCAGTTATGT+CGG 0.542976 4_4:-56801472 Msa0689630:intron
TGGTTTGTTGCAGAGATGCA+AGG 0.548391 4_4:-56800611 Msa0689630:intron
CAGATAGAGCCTATCTTGAG+TGG 0.550585 4_4:-56802122 Msa0689630:CDS
TTCAGAGTCCAAAAGTGTTG+TGG 0.550682 4_4:-56799787 Msa0689630:CDS
TATCCAATCCCCTATGACAA+AGG 0.552526 4_4:-56798216 Msa0689630:three_prime_UTR
AGAGAGTGTTGCTGAATCAG+AGG 0.559825 4_4:+56802836 None:intergenic
AGCAAGAGCTGCTTCATCAT+GGG 0.567673 4_4:+56798873 None:intergenic
ACATAAACAGTGGTATATTG+AGG 0.570472 4_4:+56799269 None:intergenic
TGCATTGTATGAACGCCAGT+TGG 0.572674 4_4:-56798369 Msa0689630:CDS
AAACCCTCGAAGAGAGGGTG+AGG 0.574160 4_4:+56803012 None:intergenic
AATAGAAAATAGTACAACAA+AGG 0.576697 4_4:+56798115 None:intergenic
GGTTTGTTGCAGAGATGCAA+GGG 0.576728 4_4:-56800610 Msa0689630:intron
GGTCAGAGAGAAGACACATC+AGG 0.578022 4_4:-56800947 Msa0689630:intron
GATACAGAATTGTTGTTAGG+GGG 0.579271 4_4:+56803069 None:intergenic
GAAAATAGTACAACAAAGGG+AGG 0.580082 4_4:+56798119 None:intergenic
GCGTTCATACAATGCAAGAC+CGG 0.582208 4_4:+56798376 None:intergenic
AGAGTTGCATCTGTAACCTC+GGG 0.585816 4_4:+56800802 None:intergenic
CAGAGATGCAAGGGTAATGT+GGG 0.590138 4_4:-56800601 Msa0689630:CDS
GCAGTCTATCAAAGTTAACT+GGG 0.592742 4_4:-56800981 Msa0689630:CDS
TGGTGGTGGAAGAGGAGTAG+AGG 0.594572 4_4:+56798436 None:intergenic
GTGAAAAGTGGAACCTGTGG+AGG 0.597511 4_4:+56802788 None:intergenic
TGTTGGCAATCTTGCTCCCG+AGG 0.597874 4_4:-56799249 Msa0689630:intron
GCAGCTCTTGCTATACAGAT+GGG 0.603103 4_4:-56798862 Msa0689630:CDS
CTACGCATGTACCAGTGCCA+GGG 0.604450 4_4:-56798409 Msa0689630:CDS
GCAGAGATGCAAGGGTAATG+TGG 0.605714 4_4:-56800602 Msa0689630:intron
AGTGTTGTGGAGTTAACTAG+TGG 0.606608 4_4:-56799774 Msa0689630:CDS
ACTGGTACATGCGTAGAAGC+TGG 0.610837 4_4:+56798416 None:intergenic
ATGAGGCACATGCCGTAAAG+CGG 0.612710 4_4:-56798331 Msa0689630:CDS
ACATGCGTAGAAGCTGGTGG+TGG 0.621131 4_4:+56798422 None:intergenic
AAACACATCCTTTGTCATAG+GGG 0.623129 4_4:+56798208 None:intergenic
TGATACAGAATTGTTGTTAG+GGG 0.623310 4_4:+56803068 None:intergenic
GTACATTAGGTGCTGAGTGG+TGG 0.623532 4_4:+56798250 None:intergenic
GAAAACAGCTCTTGAAGTAG+GGG 0.627476 4_4:+56801424 None:intergenic
TTCAATAGTTCCAACACCGA+GGG 0.628747 4_4:+56798945 None:intergenic
TGTTGGCGACCTTAGTCCCG+AGG 0.631773 4_4:-56800818 Msa0689630:CDS
ATAGTACAACAAAGGGAGGG+TGG 0.632298 4_4:+56798123 None:intergenic
GGATTCTGCCTAAACTTCTG+TGG 0.638569 4_4:+56802857 None:intergenic
ATTTGCATACAGATGAGGGA+AGG 0.645731 4_4:-56797875 Msa0689630:three_prime_UTR
GTTAACTGGGCTTATACTCG+TGG 0.652233 4_4:-56800968 Msa0689630:CDS
AGACCGGCAGGTGAAAACCC+TGG 0.653386 4_4:+56798392 None:intergenic
TCTAGGGTTAGGGTTTGGAG+AGG 0.653838 4_4:+56802893 None:intergenic
GTGGAGGATTAATAAGAGCA+GGG 0.654194 4_4:+56802804 None:intergenic
AAAATAGTACAACAAAGGGA+GGG 0.662308 4_4:+56798120 None:intergenic
GGAGTAGAGGCTGTTCCTGG+AGG 0.669202 4_4:+56798449 None:intergenic
CTATTGTGACTCTCAATGGG+AGG 0.669427 4_4:-56801093 Msa0689630:CDS
AAGATTGCCAACATAAACAG+TGG 0.678611 4_4:+56799259 None:intergenic
AGAAGACAGGCCGATCTAGG+GGG 0.682305 4_4:-56800575 Msa0689630:CDS
GCCCTAAAAGAGTGCCCTGG+GGG 0.684238 4_4:+56798011 None:intergenic
GTATTGTAAAACCATTCTAG+CGG 0.692949 4_4:+56798162 None:intergenic
CTTCAATAGTTCCAACACCG+AGG 0.694923 4_4:+56798944 None:intergenic
AGTAGGGGCTCTGAAACCTG+AGG 0.701470 4_4:+56801439 None:intergenic
AGCCCTAAAAGAGTGCCCTG+GGG 0.725713 4_4:+56798010 None:intergenic
GTAGTACATTAGGTGCTGAG+TGG 0.731282 4_4:+56798247 None:intergenic
CAATTTAGACTCACACACTG+CGG 0.734937 4_4:+56802066 None:intergenic
GGTACATGCGTAGAAGCTGG+TGG 0.755423 4_4:+56798419 None:intergenic
GTACTCGAATCAAAGCCAGG+AGG 0.789603 4_4:+56802092 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAAAAGAAAAAAAAA+AGG + chr4_4:56797972-56797991 None:intergenic 10.0%
!!! TTACATATCTATATTTTTTT+AGG + chr4_4:56798259-56798278 None:intergenic 10.0%
!! TAAAAAACCAAAAAATAAAA+AGG + chr4_4:56798784-56798803 None:intergenic 10.0%
!!! AAATAAATAAACATTTTGAT+TGG - chr4_4:56800865-56800884 Msa0689630:intron 10.0%
!! TATAAAAAATAAGTGAAAAG+TGG + chr4_4:56798166-56798185 None:intergenic 15.0%
!!! CTTTTCACTTATTTTTTATA+CGG - chr4_4:56798166-56798185 Msa0689630:three_prime_UTR 15.0%
!!! TAGTATATAATTTTGCTTTT+AGG - chr4_4:56798751-56798770 Msa0689630:intron 15.0%
!!! ATTTTCTCCTTTTTATTTTT+TGG - chr4_4:56798774-56798793 Msa0689630:intron 15.0%
!!! AGTTATTTTAGTTTTTAAGT+TGG - chr4_4:56798979-56798998 Msa0689630:CDS 15.0%
!!! ATTTATTTTTAGTTTCAAGT+TGG + chr4_4:56799247-56799266 None:intergenic 15.0%
!! TGAAACTAAAAATAAATGTA+AGG - chr4_4:56799250-56799269 Msa0689630:CDS 15.0%
!! GAAACTAAAAATAAATGTAA+GGG - chr4_4:56799251-56799270 Msa0689630:CDS 15.0%
!!! GAAACAATTTACAATTTTAA+AGG + chr4_4:56799347-56799366 None:intergenic 15.0%
!!! TATATCTAATAATCACTTTT+GGG - chr4_4:56799449-56799468 Msa0689630:intron 15.0%
!! TTTATTAACCAAAAAATAGT+TGG - chr4_4:56799683-56799702 Msa0689630:intron 15.0%
!!! ATTTACTTTTACTATTCAAT+CGG - chr4_4:56800076-56800095 Msa0689630:intron 15.0%
!! TCGAAAAAAGAAAATATAAA+GGG + chr4_4:56800210-56800229 None:intergenic 15.0%
!! ATCGAAAAAAGAAAATATAA+AGG + chr4_4:56800211-56800230 None:intergenic 15.0%
!! TTGAAAAAATATAAATGATG+TGG + chr4_4:56800650-56800669 None:intergenic 15.0%
!! ATAAACAATTTACATCTTAA+AGG + chr4_4:56800673-56800692 None:intergenic 15.0%
!!! ATTATACAAAAATTCCTTTT+TGG - chr4_4:56801212-56801231 Msa0689630:intron 15.0%
!!! TTATACAAAAATTCCTTTTT+GGG - chr4_4:56801213-56801232 Msa0689630:intron 15.0%
!! GAAATCATTGTATAATTTAT+AGG + chr4_4:56801332-56801351 None:intergenic 15.0%
!! TTTAAAAATATTCCAATTGT+TGG - chr4_4:56801379-56801398 Msa0689630:CDS 15.0%
!! ATTATGAAGCTTATTATATA+TGG + chr4_4:56802384-56802403 None:intergenic 15.0%
!! TGTATTACTACATTTAAATA+AGG - chr4_4:56802889-56802908 Msa0689630:five_prime_UTR 15.0%
!! GTATTACTACATTTAAATAA+GGG - chr4_4:56802890-56802909 Msa0689630:five_prime_UTR 15.0%
!!! TTAAACTTTCAATATTTTAC+AGG + chr4_4:56803112-56803131 None:intergenic 15.0%
!! AGTAGTAGTATAGTATTAAA+CGG - chr4_4:56797824-56797843 Msa0689630:three_prime_UTR 20.0%
!! AAAGAGAAAAGAAAATAAGA+AGG + chr4_4:56797995-56798014 None:intergenic 20.0%
!! TTGAAAATAATCACTTATGT+CGG + chr4_4:56798440-56798459 None:intergenic 20.0%
!!! GTATTTGAATTTTGTTTGAT+TGG - chr4_4:56798714-56798733 Msa0689630:intron 20.0%
!!! TTCTATTGTTCTTTCTTTTT+TGG - chr4_4:56798931-56798950 Msa0689630:CDS 20.0%
!!! ATGTTTAAAAAGTTTGAAGT+TGG + chr4_4:56799218-56799237 None:intergenic 20.0%
!!! ACTTCAAACTTTTTAAACAT+AGG - chr4_4:56799218-56799237 Msa0689630:intron 20.0%
!!! CTTCAAACTTTTTAAACATA+GGG - chr4_4:56799219-56799238 Msa0689630:intron 20.0%
!!! TTCAAACTTTTTAAACATAG+GGG - chr4_4:56799220-56799239 Msa0689630:intron 20.0%
!! ACTAGATAAACAAAAAACTA+AGG + chr4_4:56799278-56799297 None:intergenic 20.0%
!! TAAAAACAAAGAAAAACTCA+CGG + chr4_4:56799415-56799434 None:intergenic 20.0%
!!! GTATATCTAATAATCACTTT+TGG - chr4_4:56799448-56799467 Msa0689630:intron 20.0%
!!! ATATCTAATAATCACTTTTG+GGG - chr4_4:56799450-56799469 Msa0689630:intron 20.0%
!!! GTATGTATTTTCTTAGTTAA+TGG - chr4_4:56799874-56799893 Msa0689630:intron 20.0%
!!! GTTTTTGTATGTAATTTAAC+AGG - chr4_4:56800506-56800525 Msa0689630:intron 20.0%
!!! ATTTTTTGTTTTCAACATAG+TGG - chr4_4:56800594-56800613 Msa0689630:CDS 20.0%
!! TCCAACTAAAAAAATAAATC+TGG + chr4_4:56800730-56800749 None:intergenic 20.0%
!!! AAACATTTTGATTGGTTATA+TGG - chr4_4:56800873-56800892 Msa0689630:intron 20.0%
!!! AACATTTTGATTGGTTATAT+GGG - chr4_4:56800874-56800893 Msa0689630:intron 20.0%
!! CAGAAAAACAATAAAAAATC+CGG + chr4_4:56801047-56801066 None:intergenic 20.0%
!!! TAATTTTCAATCTATCATAG+TGG - chr4_4:56801540-56801559 Msa0689630:intron 20.0%
!! ATAGATATGAATGATTAGTA+AGG + chr4_4:56801756-56801775 None:intergenic 20.0%
!! ATAGAAAATAGTACAACAAA+GGG + chr4_4:56802826-56802845 None:intergenic 20.0%
!! AATAGAAAATAGTACAACAA+AGG + chr4_4:56802827-56802846 None:intergenic 20.0%
!! ATGATACAGAATTGTTGTTA+GGG + chr4_4:56797875-56797894 None:intergenic 25.0%
!!! ATCTATATTTTTTTAGGCGA+TGG + chr4_4:56798253-56798272 None:intergenic 25.0%
! ATGTTTAAAAAGTTCCAAGT+TGG - chr4_4:56799008-56799027 Msa0689630:intron 25.0%
! TCTTAGTTAATGGTAGTTAT+TGG - chr4_4:56799884-56799903 Msa0689630:intron 25.0%
! TTTACTATTCAATCGGATTT+AGG - chr4_4:56800083-56800102 Msa0689630:intron 25.0%
! TTCATTAATATCATGACACT+TGG - chr4_4:56800308-56800327 Msa0689630:intron 25.0%
! ACTAAAAAAATAAATCTGGC+TGG + chr4_4:56800726-56800745 None:intergenic 25.0%
!!! GCCAGATTTATTTTTTTAGT+TGG - chr4_4:56800726-56800745 Msa0689630:intron 25.0%
! TAGTTGGAATCACATTATAT+CGG - chr4_4:56800742-56800761 Msa0689630:intron 25.0%
! TCGGAAAATTAATATACATG+TGG - chr4_4:56800761-56800780 Msa0689630:intron 25.0%
! TAAATTAGCGATAATGCTAT+TGG - chr4_4:56800947-56800966 Msa0689630:intron 25.0%
!!! TATTGTTTTTCTGATACTTC+AGG - chr4_4:56801054-56801073 Msa0689630:intron 25.0%
! AAAAATGAAAACACCCAAAA+AGG + chr4_4:56801229-56801248 None:intergenic 25.0%
! ACAATGATTTCTGATGAAAA+CGG - chr4_4:56801341-56801360 Msa0689630:intron 25.0%
!!! GGCTTCAAATGATTTTTTAA+CGG - chr4_4:56801400-56801419 Msa0689630:CDS 25.0%
!!! GCTTCAAATGATTTTTTAAC+GGG - chr4_4:56801401-56801420 Msa0689630:CDS 25.0%
!!! CTTCAAATGATTTTTTAACG+GGG - chr4_4:56801402-56801421 Msa0689630:CDS 25.0%
!!! ACAGCTTTAAAGCTAATATT+AGG + chr4_4:56801432-56801451 None:intergenic 25.0%
! ACTAATCATTCATATCTATC+TGG - chr4_4:56801757-56801776 Msa0689630:intron 25.0%
! CTAATCATTCATATCTATCT+GGG - chr4_4:56801758-56801777 Msa0689630:intron 25.0%
! ACTTTCTCTGTCTATTTAAA+TGG - chr4_4:56801784-56801803 Msa0689630:intron 25.0%
! CTTTCTCTGTCTATTTAAAT+GGG - chr4_4:56801785-56801804 Msa0689630:intron 25.0%
! AGACTATAGTTACTATAGTA+TGG - chr4_4:56801811-56801830 Msa0689630:intron 25.0%
! TTAGAACAAACTGAATTTAC+AGG + chr4_4:56801904-56801923 None:intergenic 25.0%
!!! AAAATTGCCTTTTGTTATCA+TGG - chr4_4:56801922-56801941 Msa0689630:intron 25.0%
!! TCTGTAATTTTCAAAGACAA+AGG - chr4_4:56802283-56802302 Msa0689630:intron 25.0%
! ATAAGCTTCATAATACTCAA+AGG - chr4_4:56802390-56802409 Msa0689630:intron 25.0%
!! TATTTTACTGGTAGTACATT+AGG + chr4_4:56802705-56802724 None:intergenic 25.0%
! AAGCATAAAGAAACTACAAA+AGG + chr4_4:56802861-56802880 None:intergenic 25.0%
! TGATACAGAATTGTTGTTAG+GGG + chr4_4:56797874-56797893 None:intergenic 30.0%
! GATGATACAGAATTGTTGTT+AGG + chr4_4:56797876-56797895 None:intergenic 30.0%
AAAAGACAGACAATAGAAAG+AGG + chr4_4:56797904-56797923 None:intergenic 30.0%
TTTGGAGAGGTAATAGAAAT+GGG + chr4_4:56798036-56798055 None:intergenic 30.0%
! TTTTGATGTATTGTCTACGT+TGG - chr4_4:56798291-56798310 Msa0689630:CDS 30.0%
TTTGATGTATTGTCTACGTT+GGG - chr4_4:56798292-56798311 Msa0689630:CDS 30.0%
CACACATGTAAAAAGCAAAA+AGG - chr4_4:56798607-56798626 Msa0689630:intron 30.0%
!! TTTGATTGGATTAGTAGAGA+GGG - chr4_4:56798728-56798747 Msa0689630:intron 30.0%
!! TTTTGGCTAAATTGCATGTT+TGG - chr4_4:56798948-56798967 Msa0689630:CDS 30.0%
CAAGCTTATTCGAAAAGAAA+AGG - chr4_4:56799562-56799581 Msa0689630:intron 30.0%
!!! TTGTCTAGCCAACTATTTTT+TGG + chr4_4:56799694-56799713 None:intergenic 30.0%
AAAATAGTTGGCTAGACAAT+TGG - chr4_4:56799695-56799714 Msa0689630:intron 30.0%
CAATATATAGCAGATCATCA+TGG + chr4_4:56799767-56799786 None:intergenic 30.0%
GTTAATGGTAGTTATTGGAA+CGG - chr4_4:56799889-56799908 Msa0689630:intron 30.0%
! TTCTGCTGATTATGTATGTT+TGG - chr4_4:56800021-56800040 Msa0689630:intron 30.0%
ATTTGTGTTCAGAAAAAGAC+AGG + chr4_4:56800058-56800077 None:intergenic 30.0%
!!! CTTTTTTCGATTTGTTATCC+CGG - chr4_4:56800220-56800239 Msa0689630:intron 30.0%
TGTTATCTTTCTTCTCTCTT+TGG - chr4_4:56800442-56800461 Msa0689630:intron 30.0%
TAAATCGTTTATGGCACTTT+GGG + chr4_4:56800535-56800554 None:intergenic 30.0%
TTAAATCGTTTATGGCACTT+TGG + chr4_4:56800536-56800555 None:intergenic 30.0%
CTTACCAGTTAAATCGTTTA+TGG + chr4_4:56800544-56800563 None:intergenic 30.0%
! TAATTGTGCTGTTGTTTATG+CGG - chr4_4:56800835-56800854 Msa0689630:CDS 30.0%
! TGATTGGTTATATGGGATTA+TGG - chr4_4:56800881-56800900 Msa0689630:intron 30.0%
GACTTGAATATCAAATGCTT+CGG + chr4_4:56800908-56800927 None:intergenic 30.0%
CTAATTTACTGGTATTAGTG+AGG + chr4_4:56800935-56800954 None:intergenic 30.0%
TAGCATTATCGCTAATTTAC+TGG + chr4_4:56800946-56800965 None:intergenic 30.0%
TTTCTGATACTTCAGGTAAA+TGG - chr4_4:56801061-56801080 Msa0689630:intron 30.0%
! ATTGATATTAGCTCCTTTTG+TGG + chr4_4:56801118-56801137 None:intergenic 30.0%
ACAAAAGGAGCTAATATCAA+TGG - chr4_4:56801117-56801136 Msa0689630:CDS 30.0%
! AATCATTTGAAGCCAACAAT+TGG + chr4_4:56801394-56801413 None:intergenic 30.0%
!!! CGGTTTTTTCATTTATGTCA+CGG - chr4_4:56801472-56801491 Msa0689630:intron 30.0%
AATAATGCTTACTTCTTGGT+TGG - chr4_4:56801587-56801606 Msa0689630:intron 30.0%
ACATAAACAGTGGTATATTG+AGG + chr4_4:56801673-56801692 None:intergenic 30.0%
CAATATACCACTGTTTATGT+TGG - chr4_4:56801673-56801692 Msa0689630:intron 30.0%
TTGGAACTATTGAAGATGTT+AGG - chr4_4:56802003-56802022 Msa0689630:intron 30.0%
TGGAACTATTGAAGATGTTA+GGG - chr4_4:56802004-56802023 Msa0689630:intron 30.0%
! TGATATCTGTCTATCCTTTT+TGG - chr4_4:56802204-56802223 Msa0689630:intron 30.0%
CTCTAGATAAAAAGCCAAAA+AGG + chr4_4:56802221-56802240 None:intergenic 30.0%
!!! CTTTTTGGCTTTTTATCTAG+AGG - chr4_4:56802219-56802238 Msa0689630:intron 30.0%
!!! CCTTGATACAACATTTTTTC+TGG + chr4_4:56802252-56802271 None:intergenic 30.0%
CCAGAAAAAATGTTGTATCA+AGG - chr4_4:56802249-56802268 Msa0689630:intron 30.0%
AAGCTTATTATATATGGTCG+AGG + chr4_4:56802378-56802397 None:intergenic 30.0%
! TTGATATTTTGCAGTGTTCA+TGG - chr4_4:56802452-56802471 Msa0689630:intron 30.0%
! TGATATTTTGCAGTGTTCAT+GGG - chr4_4:56802453-56802472 Msa0689630:intron 30.0%
TAAACACATCCTTTGTCATA+GGG + chr4_4:56802735-56802754 None:intergenic 30.0%
ATAAACACATCCTTTGTCAT+AGG + chr4_4:56802736-56802755 None:intergenic 30.0%
GTATTGTAAAACCATTCTAG+CGG + chr4_4:56802780-56802799 None:intergenic 30.0%
AAAATAGTACAACAAAGGGA+GGG + chr4_4:56802822-56802841 None:intergenic 30.0%
TCATTATATATTACTGAGCC+AGG - chr4_4:56802975-56802994 Msa0689630:five_prime_UTR 30.0%
TTTAGGTATTTGGTTAGGTA+AGG - chr4_4:56802999-56803018 Msa0689630:five_prime_UTR 30.0%
TTAGGTATTTGGTTAGGTAA+GGG - chr4_4:56803000-56803019 Msa0689630:five_prime_UTR 30.0%
TGTAAGCTCTTTGTGAATAA+GGG - chr4_4:56803029-56803048 Msa0689630:five_prime_UTR 30.0%
TTGAAATTTGCATACAGATG+AGG - chr4_4:56803059-56803078 Msa0689630:five_prime_UTR 30.0%
TGAAATTTGCATACAGATGA+GGG - chr4_4:56803060-56803079 Msa0689630:five_prime_UTR 30.0%
! GATACAGAATTGTTGTTAGG+GGG + chr4_4:56797873-56797892 None:intergenic 35.0%
AAAAAAAACCCTCGAAGAGA+GGG + chr4_4:56797935-56797954 None:intergenic 35.0%
AAAAAAAAACCCTCGAAGAG+AGG + chr4_4:56797936-56797955 None:intergenic 35.0%
GTTTGGAGAGGTAATAGAAA+TGG + chr4_4:56798037-56798056 None:intergenic 35.0%
TTGATGTATTGTCTACGTTG+GGG - chr4_4:56798293-56798312 Msa0689630:CDS 35.0%
AATAATCACTTATGTCGGTG+TGG + chr4_4:56798435-56798454 None:intergenic 35.0%
TGTTATGAGCAATTCTTGTG+TGG - chr4_4:56798554-56798573 Msa0689630:intron 35.0%
AAAGAATTATTCAGCGTTGC+TGG - chr4_4:56798691-56798710 Msa0689630:intron 35.0%
AAGAATTATTCAGCGTTGCT+GGG - chr4_4:56798692-56798711 Msa0689630:intron 35.0%
!! GTTTGATTGGATTAGTAGAG+AGG - chr4_4:56798727-56798746 Msa0689630:intron 35.0%
! TGTAGACATCAGTATCGAAA+TGG + chr4_4:56799035-56799054 None:intergenic 35.0%
ACGAACACATGGATAACTTT+GGG + chr4_4:56799118-56799137 None:intergenic 35.0%
TTAAAGGCAATGAAGTCAAC+AGG + chr4_4:56799331-56799350 None:intergenic 35.0%
TGAAAACAGCTCTTGAAGTA+GGG + chr4_4:56799519-56799538 None:intergenic 35.0%
TTGAAAACAGCTCTTGAAGT+AGG + chr4_4:56799520-56799539 None:intergenic 35.0%
ATCATCATGGTTGAAAAGAC+AGG + chr4_4:56799754-56799773 None:intergenic 35.0%
! ATTGCTATTGTGACTCTCAA+TGG - chr4_4:56799842-56799861 Msa0689630:CDS 35.0%
! TTGCTATTGTGACTCTCAAT+GGG - chr4_4:56799843-56799862 Msa0689630:CDS 35.0%
! AACACATTGTCTGCAGTTTT+GGG - chr4_4:56799936-56799955 Msa0689630:intron 35.0%
GCAGTCTATCAAAGTTAACT+GGG - chr4_4:56799958-56799977 Msa0689630:intron 35.0%
!! GGACACTTCCATATTTTTGT+TGG - chr4_4:56800104-56800123 Msa0689630:intron 35.0%
TAAGGTCGCCAACAAAAATA+TGG + chr4_4:56800115-56800134 None:intergenic 35.0%
! TTTGTTATCCCGGTTTATTC+AGG - chr4_4:56800230-56800249 Msa0689630:intron 35.0%
TTGTTATCCCGGTTTATTCA+GGG - chr4_4:56800231-56800250 Msa0689630:intron 35.0%
! TGTTTCTTTTCGAAATCAGC+AGG - chr4_4:56800395-56800414 Msa0689630:intron 35.0%
AGTGCCATAAACGATTTAAC+TGG - chr4_4:56800537-56800556 Msa0689630:intron 35.0%
AGGTGGTTTAACCATGAAAT+AGG + chr4_4:56800789-56800808 None:intergenic 35.0%
GCATAAACAACAGCACAATT+AGG + chr4_4:56800836-56800855 None:intergenic 35.0%
CGATAATGCTATTGGATGTT+TGG - chr4_4:56800955-56800974 Msa0689630:CDS 35.0%
TAGACAGATCCGTTGTAATT+GGG - chr4_4:56801092-56801111 Msa0689630:CDS 35.0%
! AGTTAACTCCACAACACTTT+TGG + chr4_4:56801163-56801182 None:intergenic 35.0%
!!! GTTTTTTTATCGTGTGCAGT+TGG - chr4_4:56801255-56801274 Msa0689630:intron 35.0%
ACCAAGCAAAATCAACAATC+AGG + chr4_4:56801566-56801585 None:intergenic 35.0%
GGTGAATAATGCTTACTTCT+TGG - chr4_4:56801583-56801602 Msa0689630:intron 35.0%
GTATATTGAGGATTCTTCTC+AGG + chr4_4:56801661-56801680 None:intergenic 35.0%
AAGATTGCCAACATAAACAG+TGG + chr4_4:56801683-56801702 None:intergenic 35.0%
! AAAAGTATGAATCCTTGCCT+CGG + chr4_4:56801710-56801729 None:intergenic 35.0%
AGTTACTATAGTATGGACTC+TGG - chr4_4:56801818-56801837 Msa0689630:intron 35.0%
TCACAGACCATGATAACAAA+AGG + chr4_4:56801932-56801951 None:intergenic 35.0%
! TGCAACGAGACAAAAGTTTT+GGG - chr4_4:56802027-56802046 Msa0689630:intron 35.0%
ATTATAAATACCCTGCCAGT+TGG + chr4_4:56802145-56802164 None:intergenic 35.0%
! GATATTTTGCAGTGTTCATG+GGG - chr4_4:56802454-56802473 Msa0689630:intron 35.0%
! TAGGGGATTGGATATTTTAC+TGG + chr4_4:56802717-56802736 None:intergenic 35.0%
AAACACATCCTTTGTCATAG+GGG + chr4_4:56802734-56802753 None:intergenic 35.0%
GAAAATAGTACAACAAAGGG+AGG + chr4_4:56802823-56802842 None:intergenic 35.0%
ATATTACTGAGCCAGGATTT+AGG - chr4_4:56802982-56803001 Msa0689630:five_prime_UTR 35.0%
CTAACCAAATACCTAAATCC+TGG + chr4_4:56802996-56803015 None:intergenic 35.0%
CAGGATTTAGGTATTTGGTT+AGG - chr4_4:56802994-56803013 Msa0689630:five_prime_UTR 35.0%
ATTTGGTTAGGTAAGGGATA+TGG - chr4_4:56803006-56803025 Msa0689630:five_prime_UTR 35.0%
GTGTAAGCTCTTTGTGAATA+AGG - chr4_4:56803028-56803047 Msa0689630:five_prime_UTR 35.0%
!! CATCTTCAGTTCTAGGGTTA+GGG + chr4_4:56798059-56798078 None:intergenic 40.0%
!! ACATCTTCAGTTCTAGGGTT+AGG + chr4_4:56798060-56798079 None:intergenic 40.0%
TGGCAACATCTTCAGTTCTA+GGG + chr4_4:56798065-56798084 None:intergenic 40.0%
AGATGTTGCCACAGAAGTTT+AGG - chr4_4:56798074-56798093 Msa0689630:three_prime_UTR 40.0%
GATTAATAAGAGCAGGGTGT+TGG + chr4_4:56798132-56798151 None:intergenic 40.0%
GTGGAGGATTAATAAGAGCA+GGG + chr4_4:56798138-56798157 None:intergenic 40.0%
TGTGGAGGATTAATAAGAGC+AGG + chr4_4:56798139-56798158 None:intergenic 40.0%
TGCTCTTATTAATCCTCCAC+AGG - chr4_4:56798138-56798157 Msa0689630:three_prime_UTR 40.0%
TAAGTGAAAAGTGGAACCTG+TGG + chr4_4:56798157-56798176 None:intergenic 40.0%
TACTAGTGTAGTGTCGTATC+AGG - chr4_4:56798482-56798501 Msa0689630:intron 40.0%
CAATTTAGACTCACACACTG+CGG + chr4_4:56798876-56798895 None:intergenic 40.0%
! AGTATCGAAATGGACCAACT+TGG + chr4_4:56799025-56799044 None:intergenic 40.0%
GAACACATGGATAACTTTGG+GGG + chr4_4:56799116-56799135 None:intergenic 40.0%
CGAACACATGGATAACTTTG+GGG + chr4_4:56799117-56799136 None:intergenic 40.0%
GACGAACACATGGATAACTT+TGG + chr4_4:56799119-56799138 None:intergenic 40.0%
!! AGCCACATGCATGTTTTGAA+CGG - chr4_4:56799145-56799164 Msa0689630:intron 40.0%
TTCCGTTCAAAACATGCATG+TGG + chr4_4:56799150-56799169 None:intergenic 40.0%
TCACTTAAGGCTGCTAAACT+AGG + chr4_4:56799308-56799327 None:intergenic 40.0%
TGAAGTCAACAGGTCACTTA+AGG + chr4_4:56799321-56799340 None:intergenic 40.0%
TTGGGGAAATGCAGTTATGT+CGG - chr4_4:56799467-56799486 Msa0689630:intron 40.0%
GAAAACAGCTCTTGAAGTAG+GGG + chr4_4:56799518-56799537 None:intergenic 40.0%
AATAAGCTTGCACCCTTCAA+GGG + chr4_4:56799552-56799571 None:intergenic 40.0%
TGTCATCTGCAGTCATCATA+TGG - chr4_4:56799785-56799804 Msa0689630:CDS 40.0%
CAAAACTGCAGACAATGTGT+TGG + chr4_4:56799937-56799956 None:intergenic 40.0%
! CAACACATTGTCTGCAGTTT+TGG - chr4_4:56799935-56799954 Msa0689630:intron 40.0%
GGCAGTCTATCAAAGTTAAC+TGG - chr4_4:56799957-56799976 Msa0689630:intron 40.0%
TGTTATCCCGGTTTATTCAG+GGG - chr4_4:56800232-56800251 Msa0689630:intron 40.0%
AAACATCCCCCTGAATAAAC+CGG + chr4_4:56800242-56800261 None:intergenic 40.0%
TAGTGGAAGTGAAGTGTGTA+TGG - chr4_4:56800611-56800630 Msa0689630:intron 40.0%
TACATGTGGTGCCTATTTCA+TGG - chr4_4:56800775-56800794 Msa0689630:CDS 40.0%
TCATGGTTAAACCACCTTCT+AGG - chr4_4:56800792-56800811 Msa0689630:CDS 40.0%
CATGGTTAAACCACCTTCTA+GGG - chr4_4:56800793-56800812 Msa0689630:CDS 40.0%
ATGGTTAAACCACCTTCTAG+GGG - chr4_4:56800794-56800813 Msa0689630:CDS 40.0%
TTACTGGTATTAGTGAGGTG+AGG + chr4_4:56800930-56800949 None:intergenic 40.0%
TTTAGTGCTTCAGTTGAGTC+CGG - chr4_4:56801025-56801044 Msa0689630:intron 40.0%
GATACTTCAGGTAAATGGCT+TGG - chr4_4:56801066-56801085 Msa0689630:intron 40.0%
GTAGACAGATCCGTTGTAAT+TGG - chr4_4:56801091-56801110 Msa0689630:CDS 40.0%
! CTTTTGTGGCCCAATTACAA+CGG + chr4_4:56801104-56801123 None:intergenic 40.0%
!! TTCAGAGTCCAAAAGTGTTG+TGG - chr4_4:56801152-56801171 Msa0689630:intron 40.0%
AGTGTTGTGGAGTTAACTAG+TGG - chr4_4:56801165-56801184 Msa0689630:intron 40.0%
GAGTTAACTAGTGGAACATC+TGG - chr4_4:56801174-56801193 Msa0689630:intron 40.0%
TGAATGTTGTTGTAGTCGTG+CGG - chr4_4:56801452-56801471 Msa0689630:CDS 40.0%
!!! GCCTGATTGTTGATTTTGCT+TGG - chr4_4:56801562-56801581 Msa0689630:intron 40.0%
!! ATTTTCTGTAGAAGAAGCGC+AGG - chr4_4:56801615-56801634 Msa0689630:intron 40.0%
AAAGTATGAATCCTTGCCTC+GGG + chr4_4:56801709-56801728 None:intergenic 40.0%
! CATCATCATTTTCATGCCCT+CGG - chr4_4:56801978-56801997 Msa0689630:intron 40.0%
TTCAATAGTTCCAACACCGA+GGG + chr4_4:56801997-56802016 None:intergenic 40.0%
! GTGCAACGAGACAAAAGTTT+TGG - chr4_4:56802026-56802045 Msa0689630:intron 40.0%
TCTGTTTGGCAAACCTATCA+AGG - chr4_4:56802112-56802131 Msa0689630:CDS 40.0%
GGCAAACCTATCAAGGTAAA+TGG - chr4_4:56802119-56802138 Msa0689630:CDS 40.0%
AGTTGGCCATTTACCTTGAT+AGG + chr4_4:56802128-56802147 None:intergenic 40.0%
TATCAAGGTAAATGGCCAAC+TGG - chr4_4:56802127-56802146 Msa0689630:intron 40.0%
! TCATTTTGCTCAAAGCCAAC+TGG + chr4_4:56802588-56802607 None:intergenic 40.0%
!! GGCTTTGAGCAAAATGAATG+AGG - chr4_4:56802591-56802610 Msa0689630:intron 40.0%
TATCCAATCCCCTATGACAA+AGG - chr4_4:56802723-56802742 Msa0689630:intron 40.0%
AGTTTATTGAGCCGCTAGAA+TGG - chr4_4:56802766-56802785 Msa0689630:intron 40.0%
TGAGCCAGGATTTAGGTATT+TGG - chr4_4:56802989-56803008 Msa0689630:five_prime_UTR 40.0%
ATTTGCATACAGATGAGGGA+AGG - chr4_4:56803064-56803083 Msa0689630:five_prime_UTR 40.0%
!! TCAGTTCTAGGGTTAGGGTT+TGG + chr4_4:56798054-56798073 None:intergenic 45.0%
GTGGCAACATCTTCAGTTCT+AGG + chr4_4:56798066-56798085 None:intergenic 45.0%
GGATTCTGCCTAAACTTCTG+TGG + chr4_4:56798085-56798104 None:intergenic 45.0%
!! AGAGAGTGTTGCTGAATCAG+AGG + chr4_4:56798106-56798125 None:intergenic 45.0%
CTTCTATCAGAGCTAGCTGT+CGG + chr4_4:56798393-56798412 None:intergenic 45.0%
GCAATTCTTGTGTGGACATG+AGG - chr4_4:56798562-56798581 Msa0689630:intron 45.0%
CAGATAGAGCCTATCTTGAG+TGG - chr4_4:56798817-56798836 Msa0689630:intron 45.0%
GGCAGATTTCCACTCAAGAT+AGG + chr4_4:56798829-56798848 None:intergenic 45.0%
CAAGTACTCGAATCAAAGCC+AGG + chr4_4:56798853-56798872 None:intergenic 45.0%
ATGTGTCCAAAACGTCCACA+TGG - chr4_4:56799088-56799107 Msa0689630:intron 45.0%
AGAAAAACTCACGGAGACTG+CGG + chr4_4:56799406-56799425 None:intergenic 45.0%
!!! CAAGAGCTGTTTTCAAGTGC+TGG - chr4_4:56799524-56799543 Msa0689630:intron 45.0%
GAATAAGCTTGCACCCTTCA+AGG + chr4_4:56799553-56799572 None:intergenic 45.0%
CTATTGTGACTCTCAATGGG+AGG - chr4_4:56799846-56799865 Msa0689630:CDS 45.0%
GTTAACTGGGCTTATACTCG+TGG - chr4_4:56799971-56799990 Msa0689630:intron 45.0%
AGAGTTGCATCTGTAACCTC+GGG + chr4_4:56800140-56800159 None:intergenic 45.0%
CAGAGTTGCATCTGTAACCT+CGG + chr4_4:56800141-56800160 None:intergenic 45.0%
GTTATCCCGGTTTATTCAGG+GGG - chr4_4:56800233-56800252 Msa0689630:intron 45.0%
AACATCCCCCTGAATAAACC+GGG + chr4_4:56800241-56800260 None:intergenic 45.0%
!! TGGTTTGTTGCAGAGATGCA+AGG - chr4_4:56800328-56800347 Msa0689630:intron 45.0%
!! GGTTTGTTGCAGAGATGCAA+GGG - chr4_4:56800329-56800348 Msa0689630:intron 45.0%
CAGAGATGCAAGGGTAATGT+GGG - chr4_4:56800338-56800357 Msa0689630:intron 45.0%
CAAATCCAAACCCCCTAGAT+CGG + chr4_4:56800377-56800396 None:intergenic 45.0%
TTGTGTGCTTGCCATGCTAA+TGG - chr4_4:56800471-56800490 Msa0689630:intron 45.0%
TGCTTGCCATGCTAATGGTT+GGG - chr4_4:56800476-56800495 Msa0689630:intron 45.0%
AAGTCACCCAACCATTAGCA+TGG + chr4_4:56800485-56800504 None:intergenic 45.0%
TGGTTAAACCACCTTCTAGG+GGG - chr4_4:56800795-56800814 Msa0689630:CDS 45.0%
CGTTGTAATTGGGCCACAAA+AGG - chr4_4:56801102-56801121 Msa0689630:CDS 45.0%
TGGAACATCTGGTGAGATCA+CGG - chr4_4:56801185-56801204 Msa0689630:intron 45.0%
ATCATGGTCTGTGAAATCGC+AGG - chr4_4:56801938-56801957 Msa0689630:intron 45.0%
! CGAGGGCATGAAAATGATGA+TGG + chr4_4:56801980-56801999 None:intergenic 45.0%
CTTCAATAGTTCCAACACCG+AGG + chr4_4:56801998-56802017 None:intergenic 45.0%
AGCAAGAGCTGCTTCATCAT+GGG + chr4_4:56802069-56802088 None:intergenic 45.0%
TAGCAAGAGCTGCTTCATCA+TGG + chr4_4:56802070-56802089 None:intergenic 45.0%
! AGCAGCTCTTGCTATACAGA+TGG - chr4_4:56802076-56802095 Msa0689630:intron 45.0%
! GCAGCTCTTGCTATACAGAT+GGG - chr4_4:56802077-56802096 Msa0689630:intron 45.0%
CTATACAGATGGGCAATGCT+CGG - chr4_4:56802087-56802106 Msa0689630:CDS 45.0%
GCGTTCATACAATGCAAGAC+CGG + chr4_4:56802566-56802585 None:intergenic 45.0%
TGCATTGTATGAACGCCAGT+TGG - chr4_4:56802570-56802589 Msa0689630:intron 45.0%
!! GTAGTACATTAGGTGCTGAG+TGG + chr4_4:56802695-56802714 None:intergenic 45.0%
CATCCTTTGTCATAGGGGAT+TGG + chr4_4:56802729-56802748 None:intergenic 45.0%
ATAGTACAACAAAGGGAGGG+TGG + chr4_4:56802819-56802838 None:intergenic 45.0%
!! AAATGTTAAAGAGTGCCCCC+AGG - chr4_4:56802913-56802932 Msa0689630:five_prime_UTR 45.0%
!! AATGTTAAAGAGTGCCCCCA+GGG - chr4_4:56802914-56802933 Msa0689630:five_prime_UTR 45.0%
!!! CACTCTTTTAGGGCTGTAAG+TGG - chr4_4:56802937-56802956 Msa0689630:five_prime_UTR 45.0%
! TCTAGGGTTAGGGTTTGGAG+AGG + chr4_4:56798049-56798068 None:intergenic 50.0%
GTGAAAAGTGGAACCTGTGG+AGG + chr4_4:56798154-56798173 None:intergenic 50.0%
!! TCGGTGCTACAGAGTAGCTA+AGG + chr4_4:56798374-56798393 None:intergenic 50.0%
!! CGACAGCTAGCTCTGATAGA+AGG - chr4_4:56798391-56798410 Msa0689630:CDS 50.0%
! GCTCTGATAGAAGGCGTATC+AGG - chr4_4:56798400-56798419 Msa0689630:CDS 50.0%
CACTTATGTCGGTGTGGTGT+CGG + chr4_4:56798429-56798448 None:intergenic 50.0%
GTGTAGTGTCGTATCAGGTC+AGG - chr4_4:56798487-56798506 Msa0689630:intron 50.0%
TTGAGTGGAAATCTGCCTCC+TGG - chr4_4:56798832-56798851 Msa0689630:CDS 50.0%
GTACTCGAATCAAAGCCAGG+AGG + chr4_4:56798850-56798869 None:intergenic 50.0%
!! ATAACTTTGGGGGTGCCATG+TGG + chr4_4:56799106-56799125 None:intergenic 50.0%
GGCTAACAGAGACGAACACA+TGG + chr4_4:56799129-56799148 None:intergenic 50.0%
TGTCGGCAACATTCATCCTC+AGG - chr4_4:56799484-56799503 Msa0689630:intron 50.0%
GCAGTCATCATATGGCTTCG+TGG - chr4_4:56799793-56799812 Msa0689630:CDS 50.0%
GGTCAGAGAGAAGACACATC+AGG - chr4_4:56799992-56800011 Msa0689630:intron 50.0%
CATCTGTAACCTCGGGACTA+AGG + chr4_4:56800133-56800152 None:intergenic 50.0%
GCAGAGATGCAAGGGTAATG+TGG - chr4_4:56800337-56800356 Msa0689630:intron 50.0%
GTAATGTGGGACCAGAAGAC+AGG - chr4_4:56800351-56800370 Msa0689630:intron 50.0%
GTGCTTGCCATGCTAATGGT+TGG - chr4_4:56800475-56800494 Msa0689630:intron 50.0%
CTGGAGCTTGCAGCAAGAAA+TGG + chr4_4:56800707-56800726 None:intergenic 50.0%
CATCATCAGATCCCCCTAGA+AGG + chr4_4:56800809-56800828 None:intergenic 50.0%
GGAACATCTGGTGAGATCAC+GGG - chr4_4:56801186-56801205 Msa0689630:intron 50.0%
CTTCTCAGGACTGTCATCAC+TGG + chr4_4:56801647-56801666 None:intergenic 50.0%
!! CATTTTCATGCCCTCGGTGT+TGG - chr4_4:56801984-56802003 Msa0689630:intron 50.0%
GGCAATGCTCGGTTTCTGTT+TGG - chr4_4:56802098-56802117 Msa0689630:CDS 50.0%
AAGGTAAATGGCCAACTGGC+AGG - chr4_4:56802131-56802150 Msa0689630:intron 50.0%
AGGTAAATGGCCAACTGGCA+GGG - chr4_4:56802132-56802151 Msa0689630:intron 50.0%
ACTGGTACATGCGTAGAAGC+TGG + chr4_4:56802526-56802545 None:intergenic 50.0%
TCATACAATGCAAGACCGGC+AGG + chr4_4:56802562-56802581 None:intergenic 50.0%
ATGAGGCACATGCCGTAAAG+CGG - chr4_4:56802608-56802627 Msa0689630:intron 50.0%
GCTGAGTGGTGGCAACATTA+GGG + chr4_4:56802681-56802700 None:intergenic 50.0%
TGCTGAGTGGTGGCAACATT+AGG + chr4_4:56802682-56802701 None:intergenic 50.0%
!! GTACATTAGGTGCTGAGTGG+TGG + chr4_4:56802692-56802711 None:intergenic 50.0%
TCTTCCTCACCCTCTCTTCG+AGG - chr4_4:56797923-56797942 Msa0689630:three_prime_UTR 55.0%
CTTCCTCACCCTCTCTTCGA+GGG - chr4_4:56797924-56797943 Msa0689630:three_prime_UTR 55.0%
AAACCCTCGAAGAGAGGGTG+AGG + chr4_4:56797930-56797949 None:intergenic 55.0%
!! AGTAGGGGCTCTGAAACCTG+AGG + chr4_4:56799503-56799522 None:intergenic 55.0%
!! TCAAGTGCTGGTGCCCTTGA+AGG - chr4_4:56799536-56799555 Msa0689630:intron 55.0%
!! CAAGTGCTGGTGCCCTTGAA+GGG - chr4_4:56799537-56799556 Msa0689630:intron 55.0%
ACCAGAAGACAGGCCGATCT+AGG - chr4_4:56800361-56800380 Msa0689630:intron 55.0%
CCAGAAGACAGGCCGATCTA+GGG - chr4_4:56800362-56800381 Msa0689630:intron 55.0%
CAGAAGACAGGCCGATCTAG+GGG - chr4_4:56800363-56800382 Msa0689630:intron 55.0%
AGAAGACAGGCCGATCTAGG+GGG - chr4_4:56800364-56800383 Msa0689630:intron 55.0%
CATCAGATCCCCCTAGAAGG+TGG + chr4_4:56800806-56800825 None:intergenic 55.0%
TGTTGGCAATCTTGCTCCCG+AGG - chr4_4:56801690-56801709 Msa0689630:intron 55.0%
AGAGGAGTAGAGGCTGTTCC+TGG + chr4_4:56802496-56802515 None:intergenic 55.0%
!! TGGTGGTGGAAGAGGAGTAG+AGG + chr4_4:56802506-56802525 None:intergenic 55.0%
!! GTAGAAGCTGGTGGTGGAAG+AGG + chr4_4:56802514-56802533 None:intergenic 55.0%
ACATGCGTAGAAGCTGGTGG+TGG + chr4_4:56802520-56802539 None:intergenic 55.0%
GGTACATGCGTAGAAGCTGG+TGG + chr4_4:56802523-56802542 None:intergenic 55.0%
TCTACGCATGTACCAGTGCC+AGG - chr4_4:56802529-56802548 Msa0689630:intron 55.0%
CTACGCATGTACCAGTGCCA+GGG - chr4_4:56802530-56802549 Msa0689630:intron 55.0%
TGAGGCACATGCCGTAAAGC+GGG - chr4_4:56802609-56802628 Msa0689630:intron 55.0%
CCATGGGAATGGGTGCTCTT+GGG - chr4_4:56802635-56802654 Msa0689630:intron 55.0%
CATGGGAATGGGTGCTCTTG+GGG - chr4_4:56802636-56802655 Msa0689630:intron 55.0%
!! AGCCCTAAAAGAGTGCCCTG+GGG + chr4_4:56802932-56802951 None:intergenic 55.0%
!! CAGCCCTAAAAGAGTGCCCT+GGG + chr4_4:56802933-56802952 None:intergenic 55.0%
!! ACAGCCCTAAAAGAGTGCCC+TGG + chr4_4:56802934-56802953 None:intergenic 55.0%
!! GGGGTGCCATGTGGACGTTT+TGG + chr4_4:56799097-56799116 None:intergenic 60.0%
TGTTGGCGACCTTAGTCCCG+AGG - chr4_4:56800121-56800140 Msa0689630:intron 60.0%
CCCTAGATCGGCCTGTCTTC+TGG + chr4_4:56800365-56800384 None:intergenic 60.0%
ACAGGCCGATCTAGGGGGTT+TGG - chr4_4:56800369-56800388 Msa0689630:intron 60.0%
GCAATCTTGCTCCCGAGGCA+AGG - chr4_4:56801695-56801714 Msa0689630:intron 60.0%
GGTAGCAAGCCTACTCCTCC+AGG - chr4_4:56802475-56802494 Msa0689630:intron 60.0%
GAGGCTGTTCCTGGAGGAGT+AGG + chr4_4:56802487-56802506 None:intergenic 60.0%
GGAGTAGAGGCTGTTCCTGG+AGG + chr4_4:56802493-56802512 None:intergenic 60.0%
GCAGGTGAAAACCCTGGCAC+TGG + chr4_4:56802544-56802563 None:intergenic 60.0%
! GTGCCAGGGTTTTCACCTGC+CGG - chr4_4:56802544-56802563 Msa0689630:intron 60.0%
AGACCGGCAGGTGAAAACCC+TGG + chr4_4:56802550-56802569 None:intergenic 60.0%
TCCCATGGCTGCCCGCTTTA+CGG + chr4_4:56802623-56802642 None:intergenic 60.0%
AAAGCGGGCAGCCATGGGAA+TGG - chr4_4:56802624-56802643 Msa0689630:intron 60.0%
AAGCGGGCAGCCATGGGAAT+GGG - chr4_4:56802625-56802644 Msa0689630:intron 60.0%
GCCATGGGAATGGGTGCTCT+TGG - chr4_4:56802634-56802653 Msa0689630:intron 60.0%
!! CCCAAGAGCACCCATTCCCA+TGG + chr4_4:56802638-56802657 None:intergenic 60.0%
GAATGGGTGCTCTTGGGGCT+GGG - chr4_4:56802641-56802660 Msa0689630:intron 60.0%
!! TGCCCCCAGGGCACTCTTTT+AGG - chr4_4:56802926-56802945 Msa0689630:five_prime_UTR 60.0%
!! GCCCCCAGGGCACTCTTTTA+GGG - chr4_4:56802927-56802946 Msa0689630:five_prime_UTR 60.0%
!! GCCCTAAAAGAGTGCCCTGG+GGG + chr4_4:56802931-56802950 None:intergenic 60.0%
GGACTCTGGCTGCTGTGTGC+AGG - chr4_4:56801832-56801851 Msa0689630:intron 65.0%
TGCCGTAAAGCGGGCAGCCA+TGG - chr4_4:56802618-56802637 Msa0689630:intron 65.0%
GCCGTAAAGCGGGCAGCCAT+GGG - chr4_4:56802619-56802638 Msa0689630:intron 65.0%
GGAATGGGTGCTCTTGGGGC+TGG - chr4_4:56802640-56802659 Msa0689630:intron 65.0%
GGTGCTCTTGGGGCTGGGTA+CGG - chr4_4:56802646-56802665 Msa0689630:intron 65.0%
GTGCTCTTGGGGCTGGGTAC+GGG - chr4_4:56802647-56802666 Msa0689630:intron 65.0%
TGCTCTTGGGGCTGGGTACG+GGG - chr4_4:56802648-56802667 Msa0689630:intron 65.0%
CTTGGGGCTGGGTACGGGGC+AGG - chr4_4:56802652-56802671 Msa0689630:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 56797820 56803141 56797820 ID=Msa0689630;Name=Msa0689630
chr4_4 mRNA 56797820 56803141 56797820 ID=Msa0689630-mRNA-1;Parent=Msa0689630;Name=Msa0689630-mRNA-1;_AED=0.07;_eAED=0.07;_QI=256|1|1|1|1|1|12|421|405
chr4_4 exon 56797820 56798495 56797820 ID=Msa0689630-mRNA-1:exon:15088;Parent=Msa0689630-mRNA-1
chr4_4 exon 56798828 56799001 56798828 ID=Msa0689630-mRNA-1:exon:15087;Parent=Msa0689630-mRNA-1
chr4_4 exon 56799250 56799335 56799250 ID=Msa0689630-mRNA-1:exon:15086;Parent=Msa0689630-mRNA-1
chr4_4 exon 56799766 56799885 56799766 ID=Msa0689630-mRNA-1:exon:15085;Parent=Msa0689630-mRNA-1
chr4_4 exon 56800403 56800433 56800403 ID=Msa0689630-mRNA-1:exon:15084;Parent=Msa0689630-mRNA-1
chr4_4 exon 56800545 56800620 56800545 ID=Msa0689630-mRNA-1:exon:15083;Parent=Msa0689630-mRNA-1
chr4_4 exon 56800769 56800856 56800769 ID=Msa0689630-mRNA-1:exon:15082;Parent=Msa0689630-mRNA-1
chr4_4 exon 56800948 56801009 56800948 ID=Msa0689630-mRNA-1:exon:15081;Parent=Msa0689630-mRNA-1
chr4_4 exon 56801088 56801164 56801088 ID=Msa0689630-mRNA-1:exon:15080;Parent=Msa0689630-mRNA-1
chr4_4 exon 56801378 56801480 56801378 ID=Msa0689630-mRNA-1:exon:15079;Parent=Msa0689630-mRNA-1
chr4_4 exon 56802080 56802141 56802080 ID=Msa0689630-mRNA-1:exon:15078;Parent=Msa0689630-mRNA-1
chr4_4 exon 56802802 56803141 56802802 ID=Msa0689630-mRNA-1:exon:15077;Parent=Msa0689630-mRNA-1
chr4_4 five_prime_UTR 56802886 56803141 56802886 ID=Msa0689630-mRNA-1:five_prime_utr;Parent=Msa0689630-mRNA-1
chr4_4 CDS 56802802 56802885 56802802 ID=Msa0689630-mRNA-1:cds;Parent=Msa0689630-mRNA-1
chr4_4 CDS 56802080 56802141 56802080 ID=Msa0689630-mRNA-1:cds;Parent=Msa0689630-mRNA-1
chr4_4 CDS 56801378 56801480 56801378 ID=Msa0689630-mRNA-1:cds;Parent=Msa0689630-mRNA-1
chr4_4 CDS 56801088 56801164 56801088 ID=Msa0689630-mRNA-1:cds;Parent=Msa0689630-mRNA-1
chr4_4 CDS 56800948 56801009 56800948 ID=Msa0689630-mRNA-1:cds;Parent=Msa0689630-mRNA-1
chr4_4 CDS 56800769 56800856 56800769 ID=Msa0689630-mRNA-1:cds;Parent=Msa0689630-mRNA-1
chr4_4 CDS 56800545 56800620 56800545 ID=Msa0689630-mRNA-1:cds;Parent=Msa0689630-mRNA-1
chr4_4 CDS 56800403 56800433 56800403 ID=Msa0689630-mRNA-1:cds;Parent=Msa0689630-mRNA-1
chr4_4 CDS 56799766 56799885 56799766 ID=Msa0689630-mRNA-1:cds;Parent=Msa0689630-mRNA-1
chr4_4 CDS 56799250 56799335 56799250 ID=Msa0689630-mRNA-1:cds;Parent=Msa0689630-mRNA-1
chr4_4 CDS 56798828 56799001 56798828 ID=Msa0689630-mRNA-1:cds;Parent=Msa0689630-mRNA-1
chr4_4 CDS 56798241 56798495 56798241 ID=Msa0689630-mRNA-1:cds;Parent=Msa0689630-mRNA-1
chr4_4 three_prime_UTR 56797820 56798240 56797820 ID=Msa0689630-mRNA-1:three_prime_utr;Parent=Msa0689630-mRNA-1
Gene Sequence

>Msa0689630

ATGTTGCCACAGAAGTTTAGGCAGAATCCTCTGATTCAGCAACACTCTCTCTACCAACACCCTGCTCTTATTAATCCTCCACAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCGAGTACTTGCCGCAGTGTTTATGTCGGCAACATTCATCCTCAGGTTTCAGAGCCCCTACTTCAAGAGCTGTTTTCAAGTGCTGGTGCCCTTGAAGGGTGCAAGCTTATTCGAAAAGAAAAGTCATCATATGGCTTCGTGGACTACTTTGATCGCAGTTCAGCTGCAATTGCTATTGTGACTCTCAATGGGAGGAACATTTTTGGGCAGTCTATCAAAGTTAACTGGGCTTATACTCGTGGTCAGAGAGAAGACACATCAGGACACTTCCATATTTTTGTTGGCGACCTTAGTCCCGAGGTTACAGATGCAACTCTGTATGCTTGCTTCTCTGCGTATTCTAGTTGCTCAGATGCAAGGGTAATGTGGGACCAGAAGACAGGCCGATCTAGGGGGTTTGGATTTGTTTCTTTTCGAAATCAGCAGGAAGCCCAAAGTGCCATAAACGATTTAACTGGTAAATGGCTTGGAAGTAGACAGATCCGTTGTAATTGGGCCACAAAAGGAGCTAATATCAATGGTGAAAATCAGAGTTCAGAGTCCAAAAGTGTTGTGGAGTTAACTAGTGGAACATCTGAAGAAGCGCAGGAAATGACCAGTGATGACAGTCCTGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCCGAGGTTACTACTGTTGATCTCCATCATCATTTTCATGCCCTCGGTGTTGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAAGTTTTGGGTTTGTGAGATACAGTACCCATGATGAAGCAGCTCTTGCTATACAGATGGGCAATGCTCGGTTTCTGTTTGGCAAACCTATCAAGTGTTCATGGGGTAGCAAGCCTACTCCTCCAGGAACAGCCTCTACTCCTCTTCCACCACCAGCTTCTACGCATGTACCAGTGCCAGGGTTTTCACCTGCCGGTCTTGCATTGTATGAACGCCAGTTGGCTTTGAGCAAAATGAATGAGGCACATGCCGTAAAGCGGGCAGCCATGGGAATGGGTGCTCTTGGGGCTGGGTACGGGGCAGGATTCCCTAATGTTGCCACCACTCAGCACCTAATGTACTACCAGTAA
Protein sequence

>Msa0689630

MLPQKFRQNPLIQQHSLYQHPALINPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSSYGFVDYFDRSSAAIAIVTLNGRNIFGQSIKVNWAYTRGQREDTSGHFHIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGANINGENQSSESKSVVELTSGTSEEAQEMTSDDSPEKNPQYTTVYVGNLAPEVTTVDLHHHFHALGVGTIEDVRVQRDKSFGFVRYSTHDEAALAIQMGNARFLFGKPIKCSWGSKPTPPGTASTPLPPPASTHVPVPGFSPAGLALYERQLALSKMNEAHAVKRAAMGMGALGAGYGAGFPNVATTQHLMYYQ*