Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124060 | XP_003625614.2 | 98.125 | 320 | 6 | 0 | 38 | 357 | 1 | 320 | 0.0 | 635 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124060 | sp|Q9LYW9|DNJ36_ARATH | 71.246 | 313 | 86 | 1 | 49 | 357 | 10 | 322 | 1.14e-144 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124060 | A0A396H591 | 98.125 | 320 | 6 | 0 | 38 | 357 | 1 | 320 | 0.0 | 635 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0626270 | Msa1124060 | 0.802707 | 4.937220e-49 | -8.615850e-47 |
| Msa0689630 | Msa1124060 | -0.802106 | 6.565210e-49 | -8.615850e-47 |
| Msa0707100 | Msa1124060 | 0.882343 | 1.128395e-70 | -8.615850e-47 |
| Msa0739080 | Msa1124060 | 0.829778 | 4.255375e-55 | -8.615850e-47 |
| Msa0819540 | Msa1124060 | 0.819181 | 1.329163e-52 | -8.615850e-47 |
| Msa0147380 | Msa1124060 | 0.810358 | 1.199232e-50 | -8.615850e-47 |
| Msa0372420 | Msa1124060 | 0.834837 | 2.378866e-56 | -8.615850e-47 |
| Msa0382400 | Msa1124060 | 0.855534 | 5.915808e-62 | -8.615850e-47 |
| Msa0432130 | Msa1124060 | 0.832711 | 8.087644e-56 | -8.615850e-47 |
| Msa0438000 | Msa1124060 | 0.953793 | 1.250933e-111 | -8.615850e-47 |
| Msa0476640 | Msa1124060 | 0.834255 | 3.331005e-56 | -8.615850e-47 |
| Msa1079190 | Msa1124060 | 0.894951 | 1.520242e-75 | -8.615850e-47 |
| Msa1082290 | Msa1124060 | 0.855652 | 5.463603e-62 | -8.615850e-47 |
| Msa0304100 | Msa1124060 | 0.823215 | 1.561759e-53 | -8.615850e-47 |
| Msa1124060 | Msa1133540 | 0.904499 | 1.151447e-79 | -8.615850e-47 |
| Msa1124060 | Msa1168990 | 0.972662 | 3.917022e-135 | -8.615850e-47 |
| Msa1124060 | Msa1169080 | 0.910997 | 1.000850e-82 | -8.615850e-47 |
| Msa1124060 | Msa1362020 | 0.802193 | 6.300452e-49 | -8.615850e-47 |
| Msa1124060 | Msa1421460 | 0.827477 | 1.531234e-54 | -8.615850e-47 |
| Msa1124060 | Msa1422430 | 0.813975 | 1.949121e-51 | -8.615850e-47 |
| Msa0573010 | Msa1124060 | 0.903779 | 2.437993e-79 | -8.615850e-47 |
| Msa0573090 | Msa1124060 | 0.901033 | 4.031830e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124060 | MtrunA17_Chr7g0263971 | 98.125 | 320 | 6 | 0 | 38 | 357 | 1 | 320 | 0.0 | 635 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124060 | AT5G03160.1 | 71.246 | 313 | 86 | 1 | 49 | 357 | 10 | 322 | 1.16e-145 | 421 |
Find 61 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCAATGCTTAATCTTAT+TGG | 0.076910 | 7_3:+75087223 | Msa1124060:CDS |
| CAACCCTTTGTTTCTGCTTC+AGG | 0.202001 | 7_3:+75087343 | Msa1124060:CDS |
| AAAGCATCTCGAAGTATAAA+AGG | 0.221656 | 7_3:+75088874 | Msa1124060:CDS |
| CTATGGATTCGGTGCCTTAC+AGG | 0.256750 | 7_3:+75087260 | Msa1124060:CDS |
| AGCCAACTTCACAAAATCTT+TGG | 0.269965 | 7_3:+75089631 | Msa1124060:CDS |
| GATCTAGGCGAAGACCTTTC+TGG | 0.287530 | 7_3:-75090121 | None:intergenic |
| TGGTTTCTCGTTGTTAACTA+TGG | 0.317442 | 7_3:+75087243 | Msa1124060:CDS |
| ACTTATTGATGCTCTTGTTC+AGG | 0.335775 | 7_3:+75090508 | Msa1124060:CDS |
| CTCGTTGTTAACTATGGATT+CGG | 0.359454 | 7_3:+75087249 | Msa1124060:CDS |
| ACATTATGTGCAAGATGGTC+AGG | 0.406282 | 7_3:-75090389 | None:intergenic |
| GGCTGAAGATAATGCGAGTA+AGG | 0.407097 | 7_3:+75090316 | Msa1124060:intron |
| GTTCACTATGCTCAGGATCT+AGG | 0.412241 | 7_3:-75090136 | None:intergenic |
| AGCTTCACTACAACTGTTCA+AGG | 0.413274 | 7_3:-75090468 | None:intergenic |
| CGGACATTCAATTGCAGAAA+AGG | 0.413425 | 7_3:+75089547 | Msa1124060:CDS |
| GGAAGATGAAAACAATTTAG+AGG | 0.413639 | 7_3:+75089943 | Msa1124060:CDS |
| GCCTGTGTAAAGTGCTAGTC+AGG | 0.413773 | 7_3:+75090426 | Msa1124060:CDS |
| CATAGAGGGACTGAGCTGTT+TGG | 0.420825 | 7_3:-75089604 | None:intergenic |
| GAGGGTGCCATTGCTGAGTC+TGG | 0.421230 | 7_3:+75089908 | Msa1124060:CDS |
| GGGCAAGCTACGGGTGGCAG+TGG | 0.421513 | 7_3:+75090337 | Msa1124060:CDS |
| AGGTATGCTTCTGAAAGGTT+TGG | 0.434008 | 7_3:-75088949 | None:intergenic |
| GGAGCTCTCTCAGCTATTGC+AGG | 0.434656 | 7_3:+75089568 | Msa1124060:CDS |
| ACTTGCGAAGAACTGAAGCC+TGG | 0.451633 | 7_3:-75088975 | None:intergenic |
| GTCTGAAACAATCCCCTGTA+AGG | 0.471459 | 7_3:-75087274 | None:intergenic |
| GATATCTGATAAAGAGTATG+AGG | 0.472530 | 7_3:+75089889 | Msa1124060:CDS |
| CAGTTCTTCGCAAGTTATGC+AGG | 0.476082 | 7_3:+75088983 | Msa1124060:CDS |
| TATGGATTCGGTGCCTTACA+GGG | 0.480574 | 7_3:+75087261 | Msa1124060:CDS |
| CAAGCTACGGGTGGCAGTGG+AGG | 0.484614 | 7_3:+75090340 | Msa1124060:CDS |
| CTGATCATGATGTTGCTACA+AGG | 0.485535 | 7_3:+75090002 | Msa1124060:CDS |
| CATAATGTACATCTTCATCT+TGG | 0.494888 | 7_3:+75090404 | Msa1124060:CDS |
| TTCAGAAGCATACCTTTCCC+AGG | 0.497787 | 7_3:+75088957 | Msa1124060:CDS |
| GGTGGCAGTGGAGGAATTCA+AGG | 0.501651 | 7_3:+75090349 | Msa1124060:CDS |
| TGAAGTTGGCTGACTCATAG+AGG | 0.510931 | 7_3:-75089619 | None:intergenic |
| GTTGTTACCTTAGTGCATGC+TGG | 0.513136 | 7_3:-75089686 | None:intergenic |
| AGGGTTGAATAATGACAAGT+TGG | 0.541100 | 7_3:-75087327 | None:intergenic |
| AAGCATCTCGAAGTATAAAA+GGG | 0.546866 | 7_3:+75088875 | Msa1124060:CDS |
| TTTCTCTCCAGCATGCACTA+AGG | 0.557072 | 7_3:+75089679 | Msa1124060:CDS |
| ATGCGAGTAAGGGCAAGCTA+CGG | 0.560599 | 7_3:+75090327 | Msa1124060:CDS |
| TGCGAGTAAGGGCAAGCTAC+GGG | 0.563487 | 7_3:+75090328 | Msa1124060:CDS |
| TGTAAAGTGCTAGTCAGGCT+TGG | 0.567833 | 7_3:+75090431 | Msa1124060:CDS |
| ATATTCAGGCATTACCAGAA+AGG | 0.568306 | 7_3:+75090107 | Msa1124060:intron |
| CTTGCGAAGAACTGAAGCCT+GGG | 0.570619 | 7_3:-75088974 | None:intergenic |
| AGGCTAAGCTTCTTAAAGTG+AGG | 0.576851 | 7_3:+75089861 | Msa1124060:intron |
| GTGCTAGTCAGGCTTGGCAG+AGG | 0.590572 | 7_3:+75090437 | Msa1124060:CDS |
| TATACCTGAAGCAGAAACAA+AGG | 0.591247 | 7_3:-75087347 | None:intergenic |
| AAGTTTCTGGAGTTAAAACC+CGG | 0.592058 | 7_3:+75089527 | Msa1124060:CDS |
| ATACCTGAAGCAGAAACAAA+GGG | 0.600717 | 7_3:-75087346 | None:intergenic |
| GAAGAACTGAAGCCTGGGAA+AGG | 0.605583 | 7_3:-75088969 | None:intergenic |
| CATTATGTGCAAGATGGTCA+GGG | 0.612509 | 7_3:-75090388 | None:intergenic |
| GCTGAAGATAATGCGAGTAA+GGG | 0.618327 | 7_3:+75090317 | Msa1124060:CDS |
| GGGAAAGGTATGCTTCTGAA+AGG | 0.621313 | 7_3:-75088954 | None:intergenic |
| GCCTGACTAGCACTTTACAC+AGG | 0.631954 | 7_3:-75090427 | None:intergenic |
| ATGGATTCGGTGCCTTACAG+GGG | 0.639407 | 7_3:+75087262 | Msa1124060:CDS |
| GAAGTTGGCTGACTCATAGA+GGG | 0.643770 | 7_3:-75089618 | None:intergenic |
| GATGTACATTATGTGCAAGA+TGG | 0.649387 | 7_3:-75090394 | None:intergenic |
| AAGAAAACCAGACTCAGCAA+TGG | 0.664979 | 7_3:-75089915 | None:intergenic |
| GAGTAAGGGCAAGCTACGGG+TGG | 0.668740 | 7_3:+75090331 | Msa1124060:CDS |
| TTAGAGGCATTGTTGTTACG+TGG | 0.670478 | 7_3:+75089959 | Msa1124060:CDS |
| ATATCTGATAAAGAGTATGA+GGG | 0.673598 | 7_3:+75089890 | Msa1124060:CDS |
| AAAAGGGAAACATTATACTG+AGG | 0.693246 | 7_3:+75088891 | Msa1124060:CDS |
| TGAAGCTCTTAAGATCGATG+AGG | 0.710564 | 7_3:+75090484 | Msa1124060:CDS |
| GTAGATATGAGCAATCTGAG+AGG | 0.737942 | 7_3:+75089495 | Msa1124060:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAACATTAAATCAAAAT+GGG | - | chr7_3:75087422-75087441 | None:intergenic | 10.0% |
| !! | AAATAAACATTAAATCAAAA+TGG | - | chr7_3:75087423-75087442 | None:intergenic | 10.0% |
| !! | TAAAGATATGAAATTTAATA+GGG | - | chr7_3:75087455-75087474 | None:intergenic | 10.0% |
| !! | TTAAAGATATGAAATTTAAT+AGG | - | chr7_3:75087456-75087475 | None:intergenic | 10.0% |
| !!! | AAATTATGTGTTTATTTTAA+AGG | + | chr7_3:75087559-75087578 | Msa1124060:intron | 10.0% |
| !!! | ATTTTATAGCTTTTATTTTT+TGG | + | chr7_3:75087712-75087731 | Msa1124060:intron | 10.0% |
| !!! | TTTTATAGCTTTTATTTTTT+GGG | + | chr7_3:75087713-75087732 | Msa1124060:intron | 10.0% |
| !! | ACAAAAAAAAAATAAATGGT+TGG | - | chr7_3:75087386-75087405 | None:intergenic | 15.0% |
| !! | ATAAACATTAAATCAAAATG+GGG | - | chr7_3:75087421-75087440 | None:intergenic | 15.0% |
| !! | AAAGATATGAAATTTAATAG+GGG | - | chr7_3:75087454-75087473 | None:intergenic | 15.0% |
| !! | CATTTATCATAAAATGAAAA+GGG | + | chr7_3:75088244-75088263 | Msa1124060:intron | 15.0% |
| !! | AAATATAATCTAATTCAAAC+AGG | + | chr7_3:75088632-75088651 | Msa1124060:intron | 15.0% |
| !! | AAACTAATATCTTAAAGTAT+AGG | - | chr7_3:75089349-75089368 | None:intergenic | 15.0% |
| !! | AGGATAATATTAGAAAAAAT+TGG | - | chr7_3:75090069-75090088 | None:intergenic | 15.0% |
| !!! | ATAGAATTTTGAAATCATTG+AGG | + | chr7_3:75087197-75087216 | Msa1124060:CDS | 20.0% |
| !!! | CAAATTCAGAGTTTATTTTT+GGG | - | chr7_3:75087836-75087855 | None:intergenic | 20.0% |
| !!! | ACAAATTCAGAGTTTATTTT+TGG | - | chr7_3:75087837-75087856 | None:intergenic | 20.0% |
| !! | TAGTTATAGAATTAGTAAAG+TGG | - | chr7_3:75088063-75088082 | None:intergenic | 20.0% |
| !!! | CCTTTTCATTTTATGATAAA+TGG | - | chr7_3:75088246-75088265 | None:intergenic | 20.0% |
| !! | CCATTTATCATAAAATGAAA+AGG | + | chr7_3:75088243-75088262 | Msa1124060:intron | 20.0% |
| !! | CACTTCTAATAAAAGATATA+TGG | - | chr7_3:75088378-75088397 | None:intergenic | 20.0% |
| !! | GGTATATAGTATAGTATATA+AGG | + | chr7_3:75088503-75088522 | Msa1124060:intron | 20.0% |
| !!! | ATTTTGCCAAAAGTTTTTAA+GGG | - | chr7_3:75088578-75088597 | None:intergenic | 20.0% |
| !!! | AATTTTGCCAAAAGTTTTTA+AGG | - | chr7_3:75088579-75088598 | None:intergenic | 20.0% |
| !! | TCTTAAAGTATAGGATTTAT+GGG | - | chr7_3:75089340-75089359 | None:intergenic | 20.0% |
| !! | ATCTTAAAGTATAGGATTTA+TGG | - | chr7_3:75089341-75089360 | None:intergenic | 20.0% |
| !! | AGGAATAGAAAGTAAATTTA+TGG | - | chr7_3:75089729-75089748 | None:intergenic | 20.0% |
| !! | GAAAATAATGCATATAAAGT+TGG | - | chr7_3:75089838-75089857 | None:intergenic | 20.0% |
| !!! | TTATATGCATTATTTTCTTC+AGG | + | chr7_3:75089841-75089860 | Msa1124060:intron | 20.0% |
| !! | GAAATTTGAACAATATATCA+GGG | - | chr7_3:75090217-75090236 | None:intergenic | 20.0% |
| !! | AGAAATTTGAACAATATATC+AGG | - | chr7_3:75090218-75090237 | None:intergenic | 20.0% |
| !!! | TTTTTCATCATTCTTTCTTT+TGG | + | chr7_3:75090257-75090276 | Msa1124060:intron | 20.0% |
| !!! | TTTTCATCATTCTTTCTTTT+GGG | + | chr7_3:75090258-75090277 | Msa1124060:intron | 20.0% |
| !!! | TATTTCTTTGTTTTCCATAA+AGG | + | chr7_3:75090295-75090314 | Msa1124060:intron | 20.0% |
| ! | ATCTCAATGCTTAATCTTAT+TGG | + | chr7_3:75087223-75087242 | Msa1124060:CDS | 25.0% |
| ! | ACAACACAAATAAAAACCTA+AGG | - | chr7_3:75087538-75087557 | None:intergenic | 25.0% |
| ! | TGTAGTTTGAATTTGAACAT+TGG | + | chr7_3:75087750-75087769 | Msa1124060:intron | 25.0% |
| ! | TTTCTATATACCATTCAAAC+AGG | - | chr7_3:75087803-75087822 | None:intergenic | 25.0% |
| ! | AATGGTATATAGAAAGAGTT+AGG | + | chr7_3:75087808-75087827 | Msa1124060:intron | 25.0% |
| ! | TAAACCATAGCATAAAACAA+CGG | - | chr7_3:75088181-75088200 | None:intergenic | 25.0% |
| ! | TATCAACGAAATACAGTATT+TGG | - | chr7_3:75088299-75088318 | None:intergenic | 25.0% |
| ! | AAATACTGTATTTCGTTGAT+AGG | + | chr7_3:75088298-75088317 | Msa1124060:intron | 25.0% |
| ! | TATAGTGCAATTAACAAACT+TGG | - | chr7_3:75088479-75088498 | None:intergenic | 25.0% |
| ! | TTGTTAATTGCACTATATTG+TGG | + | chr7_3:75088482-75088501 | Msa1124060:intron | 25.0% |
| !! | TAGTATATAAGGTCTTGTAT+TGG | + | chr7_3:75088514-75088533 | Msa1124060:intron | 25.0% |
| !!! | TTTTGCCAAAAGTTTTTAAG+GGG | - | chr7_3:75088577-75088596 | None:intergenic | 25.0% |
| !!! | TGGGAGTATTATTTTTTAGT+GGG | - | chr7_3:75088720-75088739 | None:intergenic | 25.0% |
| !!! | TTGGGAGTATTATTTTTTAG+TGG | - | chr7_3:75088721-75088740 | None:intergenic | 25.0% |
| ! | AAGTAATAAAGTTAGGACTT+GGG | - | chr7_3:75088739-75088758 | None:intergenic | 25.0% |
| ! | TCTAGAGAAGTAATAAAGTT+AGG | - | chr7_3:75088746-75088765 | None:intergenic | 25.0% |
| ! | TTTCCAATTTCTGTTTCATA+AGG | + | chr7_3:75089089-75089108 | Msa1124060:intron | 25.0% |
| ! | TATCCTTATGAAACAGAAAT+TGG | - | chr7_3:75089095-75089114 | None:intergenic | 25.0% |
| ! | TTAAAGTATAGGATTTATGG+GGG | - | chr7_3:75089338-75089357 | None:intergenic | 25.0% |
| ! | CTTAAAGTATAGGATTTATG+GGG | - | chr7_3:75089339-75089358 | None:intergenic | 25.0% |
| ! | AATGATATCACTATCCAATT+AGG | - | chr7_3:75089456-75089475 | None:intergenic | 25.0% |
| ! | AGAAAGTAAATTTATGGATG+TGG | - | chr7_3:75089723-75089742 | None:intergenic | 25.0% |
| ! | AAAGTTAATGCCTAAGTATT+GGG | + | chr7_3:75089772-75089791 | Msa1124060:intron | 25.0% |
| !! | ATATCTGATAAAGAGTATGA+GGG | + | chr7_3:75089890-75089909 | Msa1124060:CDS | 25.0% |
| ! | AATATTATCCTGCTTATATG+TGG | + | chr7_3:75090078-75090097 | Msa1124060:intron | 25.0% |
| ! | ATATTATCCTGCTTATATGT+GGG | + | chr7_3:75090079-75090098 | Msa1124060:intron | 25.0% |
| AAATGGTTGGAAAGAAATGA+AGG | - | chr7_3:75087373-75087392 | None:intergenic | 30.0% | |
| !!! | TTTGATCCAACTTTGTTTTG+TGG | + | chr7_3:75087479-75087498 | Msa1124060:intron | 30.0% |
| !!! | TTGATCCAACTTTGTTTTGT+GGG | + | chr7_3:75087480-75087499 | Msa1124060:intron | 30.0% |
| TGAATTGGTTGGATTTATTG+AGG | + | chr7_3:75087689-75087708 | Msa1124060:intron | 30.0% | |
| TTTAGTATGACCTGTTTGAA+TGG | + | chr7_3:75087790-75087809 | Msa1124060:intron | 30.0% | |
| !! | AGTTTGTTAGCTAAGATAGT+AGG | - | chr7_3:75088003-75088022 | None:intergenic | 30.0% |
| AATCTCATATGATGTCATTG+TGG | - | chr7_3:75088126-75088145 | None:intergenic | 30.0% | |
| !! | TTTTCCGTTGTTTTATGCTA+TGG | + | chr7_3:75088174-75088193 | Msa1124060:intron | 30.0% |
| ! | TATTTCGTTGATAGGCATTA+TGG | + | chr7_3:75088306-75088325 | Msa1124060:intron | 30.0% |
| ! | ATCGCTACAAAGTGAAATTT+TGG | + | chr7_3:75088426-75088445 | Msa1124060:intron | 30.0% |
| !! | TGAATAAACTTGCTGTTAAG+AGG | - | chr7_3:75088603-75088622 | None:intergenic | 30.0% |
| GAAGTAATAAAGTTAGGACT+TGG | - | chr7_3:75088740-75088759 | None:intergenic | 30.0% | |
| ! | AAAGCATCTCGAAGTATAAA+AGG | + | chr7_3:75088874-75088893 | Msa1124060:CDS | 30.0% |
| AAGCATCTCGAAGTATAAAA+GGG | + | chr7_3:75088875-75088894 | Msa1124060:CDS | 30.0% | |
| AAAAGGGAAACATTATACTG+AGG | + | chr7_3:75088891-75088910 | Msa1124060:CDS | 30.0% | |
| TACCAAACTTTCAAAAAGCA+CGG | - | chr7_3:75089039-75089058 | None:intergenic | 30.0% | |
| CTAACTTCAATAACGATAAG+GGG | - | chr7_3:75089168-75089187 | None:intergenic | 30.0% | |
| GCTAACTTCAATAACGATAA+GGG | - | chr7_3:75089169-75089188 | None:intergenic | 30.0% | |
| TGCTAACTTCAATAACGATA+AGG | - | chr7_3:75089170-75089189 | None:intergenic | 30.0% | |
| TAAAGTATAGGATTTATGGG+GGG | - | chr7_3:75089337-75089356 | None:intergenic | 30.0% | |
| ATTAGGAGTTTGAGTGATTT+GGG | - | chr7_3:75089439-75089458 | None:intergenic | 30.0% | |
| AATTAGGAGTTTGAGTGATT+TGG | - | chr7_3:75089440-75089459 | None:intergenic | 30.0% | |
| AAATCACTCAAACTCCTAAT+TGG | + | chr7_3:75089439-75089458 | Msa1124060:intron | 30.0% | |
| ATTGGATAGTGATATCATTC+AGG | + | chr7_3:75089457-75089476 | Msa1124060:intron | 30.0% | |
| ! | TTCCAAAGATTTTGTGAAGT+TGG | - | chr7_3:75089636-75089655 | None:intergenic | 30.0% |
| ACTTGTGTAATTGCTAATAC+AGG | - | chr7_3:75089749-75089768 | None:intergenic | 30.0% | |
| GAAAGTTAATGCCTAAGTAT+TGG | + | chr7_3:75089771-75089790 | Msa1124060:intron | 30.0% | |
| ! | GATATCTGATAAAGAGTATG+AGG | + | chr7_3:75089889-75089908 | Msa1124060:CDS | 30.0% |
| GGAAGATGAAAACAATTTAG+AGG | + | chr7_3:75089943-75089962 | Msa1124060:CDS | 30.0% | |
| ATATGTGGGCATATATATTC+AGG | + | chr7_3:75090093-75090112 | Msa1124060:intron | 30.0% | |
| ! | GAACTGAAAAAAGCATACTT+TGG | + | chr7_3:75090155-75090174 | Msa1124060:CDS | 30.0% |
| GAATGATGAAAAACTTGAGA+AGG | - | chr7_3:75090250-75090269 | None:intergenic | 30.0% | |
| CATAATGTACATCTTCATCT+TGG | + | chr7_3:75090404-75090423 | Msa1124060:CDS | 30.0% | |
| TGGTTTCTCGTTGTTAACTA+TGG | + | chr7_3:75087243-75087262 | Msa1124060:CDS | 35.0% | |
| CTCGTTGTTAACTATGGATT+CGG | + | chr7_3:75087249-75087268 | Msa1124060:CDS | 35.0% | |
| AGGGTTGAATAATGACAAGT+TGG | - | chr7_3:75087330-75087349 | None:intergenic | 35.0% | |
| ATACCTGAAGCAGAAACAAA+GGG | - | chr7_3:75087349-75087368 | None:intergenic | 35.0% | |
| TATACCTGAAGCAGAAACAA+AGG | - | chr7_3:75087350-75087369 | None:intergenic | 35.0% | |
| ! | ATGACAGAACTCTAGTTTCA+AGG | + | chr7_3:75087899-75087918 | Msa1124060:intron | 35.0% |
| AGCACTAGCTCATTTGTAAA+GGG | - | chr7_3:75087933-75087952 | None:intergenic | 35.0% | |
| AAGCACTAGCTCATTTGTAA+AGG | - | chr7_3:75087934-75087953 | None:intergenic | 35.0% | |
| TGTTAGCTAAGATAGTAGGA+GGG | - | chr7_3:75087999-75088018 | None:intergenic | 35.0% | |
| TTGTTAGCTAAGATAGTAGG+AGG | - | chr7_3:75088000-75088019 | None:intergenic | 35.0% | |
| AATCTATTATGCGATACTCC+TGG | + | chr7_3:75088023-75088042 | Msa1124060:intron | 35.0% | |
| ATCTATTATGCGATACTCCT+GGG | + | chr7_3:75088024-75088043 | Msa1124060:intron | 35.0% | |
| ATTAATGCATTCCAGGAGAT+CGG | - | chr7_3:75088153-75088172 | None:intergenic | 35.0% | |
| GGAAAACATTAATGCATTCC+AGG | - | chr7_3:75088160-75088179 | None:intergenic | 35.0% | |
| CATAAAATGAAAAGGGCAAG+TGG | + | chr7_3:75088251-75088270 | Msa1124060:intron | 35.0% | |
| AAGTGGCATCACATAATAGT+GGG | + | chr7_3:75088268-75088287 | Msa1124060:intron | 35.0% | |
| ! | AGCTTCCCCTTAAAAACTTT+TGG | + | chr7_3:75088569-75088588 | Msa1124060:intron | 35.0% |
| GTGATGATTCAGTGTTAAAG+TGG | + | chr7_3:75088778-75088797 | Msa1124060:intron | 35.0% | |
| AGATCAGAACCAAAAAAGAC+TGG | - | chr7_3:75088818-75088837 | None:intergenic | 35.0% | |
| !!! | AGTCTTTTTTGGTTCTGATC+TGG | + | chr7_3:75088817-75088836 | Msa1124060:intron | 35.0% |
| ! | ACCAAACTTTCAAAAAGCAC+GGG | - | chr7_3:75089038-75089057 | None:intergenic | 35.0% |
| TTAGGAGTTTGAGTGATTTG+GGG | - | chr7_3:75089438-75089457 | None:intergenic | 35.0% | |
| ! | GATATCATTCAGGTGCTTTT+TGG | + | chr7_3:75089467-75089486 | Msa1124060:intron | 35.0% |
| !! | AAGTTTCTGGAGTTAAAACC+CGG | + | chr7_3:75089527-75089546 | Msa1124060:CDS | 35.0% |
| ! | TTTTCTGCAATTGAATGTCC+GGG | - | chr7_3:75089548-75089567 | None:intergenic | 35.0% |
| ! | CTTTTCTGCAATTGAATGTC+CGG | - | chr7_3:75089549-75089568 | None:intergenic | 35.0% |
| AGCCAACTTCACAAAATCTT+TGG | + | chr7_3:75089631-75089650 | Msa1124060:CDS | 35.0% | |
| !! | TAATGCCTAAGTATTGGGTT+TGG | + | chr7_3:75089777-75089796 | Msa1124060:intron | 35.0% |
| !! | AATGCCTAAGTATTGGGTTT+GGG | + | chr7_3:75089778-75089797 | Msa1124060:intron | 35.0% |
| TTGTCTTGTGGAAATGATGT+TGG | + | chr7_3:75090026-75090045 | Msa1124060:intron | 35.0% | |
| ATATATGCCCACATATAAGC+AGG | - | chr7_3:75090089-75090108 | None:intergenic | 35.0% | |
| ATATTCAGGCATTACCAGAA+AGG | + | chr7_3:75090107-75090126 | Msa1124060:intron | 35.0% | |
| !! | TTTTTCAGTTCACTATGCTC+AGG | - | chr7_3:75090146-75090165 | None:intergenic | 35.0% |
| !!! | TCTTTTGGGTGTTGATGATT+CGG | + | chr7_3:75090272-75090291 | Msa1124060:intron | 35.0% |
| GATGTACATTATGTGCAAGA+TGG | - | chr7_3:75090397-75090416 | None:intergenic | 35.0% | |
| ATCGACCCACAAAACAAAGT+TGG | - | chr7_3:75087488-75087507 | None:intergenic | 40.0% | |
| ! | TTTTCATCACTCTCAGCCTT+AGG | + | chr7_3:75087519-75087538 | Msa1124060:intron | 40.0% |
| AGCATGTTGCATGAATTGGT+TGG | + | chr7_3:75087678-75087697 | Msa1124060:intron | 40.0% | |
| ACATTGGAAACTAGAGAGAG+AGG | + | chr7_3:75087766-75087785 | Msa1124060:intron | 40.0% | |
| CATTGGAAACTAGAGAGAGA+GGG | + | chr7_3:75087767-75087786 | Msa1124060:intron | 40.0% | |
| GCACTAGCTCATTTGTAAAG+GGG | - | chr7_3:75087932-75087951 | None:intergenic | 40.0% | |
| CTCATATGATGTCATTGTGG+AGG | - | chr7_3:75088123-75088142 | None:intergenic | 40.0% | |
| !!! | TGAGATTTTTTCCGATCTCC+TGG | + | chr7_3:75088139-75088158 | Msa1124060:intron | 40.0% |
| ACGTATGCAAGATCGACTAA+TGG | - | chr7_3:75088218-75088237 | None:intergenic | 40.0% | |
| CAAGTGGCATCACATAATAG+TGG | + | chr7_3:75088267-75088286 | Msa1124060:intron | 40.0% | |
| CAGCAAGTTTATTCAGTTCG+TGG | + | chr7_3:75088608-75088627 | Msa1124060:intron | 40.0% | |
| CACTGAATCATCACATTCAC+AGG | - | chr7_3:75088772-75088791 | None:intergenic | 40.0% | |
| ! | AGAACCAAAAAAGACTGGTC+AGG | - | chr7_3:75088813-75088832 | None:intergenic | 40.0% |
| !!! | CTTTTTTGGTTCTGATCTGG+TGG | + | chr7_3:75088820-75088839 | Msa1124060:intron | 40.0% |
| ! | AGGTATGCTTCTGAAAGGTT+TGG | - | chr7_3:75088952-75088971 | None:intergenic | 40.0% |
| ! | CCAAACTTTCAAAAAGCACG+GGG | - | chr7_3:75089037-75089056 | None:intergenic | 40.0% |
| !!! | ATTAGTTTTCCTCCTTCGTC+CGG | + | chr7_3:75089251-75089270 | Msa1124060:intron | 40.0% |
| TGAACTAAGGGATAAGGAGT+TGG | - | chr7_3:75089295-75089314 | None:intergenic | 40.0% | |
| ! | CTGGTTTGAACTAAGGGATA+AGG | - | chr7_3:75089301-75089320 | None:intergenic | 40.0% |
| !! | GCTGAACTGGTTTGAACTAA+GGG | - | chr7_3:75089307-75089326 | None:intergenic | 40.0% |
| !! | AGCTGAACTGGTTTGAACTA+AGG | - | chr7_3:75089308-75089327 | None:intergenic | 40.0% |
| TATAGGATTTATGGGGGGTT+GGG | - | chr7_3:75089332-75089351 | None:intergenic | 40.0% | |
| ! | TTTGAGTGATTTGGGGTGAT+GGG | - | chr7_3:75089431-75089450 | None:intergenic | 40.0% |
| GTAGATATGAGCAATCTGAG+AGG | + | chr7_3:75089495-75089514 | Msa1124060:intron | 40.0% | |
| GAGGAGCTACAAAAAGTTTC+TGG | + | chr7_3:75089514-75089533 | Msa1124060:CDS | 40.0% | |
| CGGACATTCAATTGCAGAAA+AGG | + | chr7_3:75089547-75089566 | Msa1124060:CDS | 40.0% | |
| AGGCTAAGCTTCTTAAAGTG+AGG | + | chr7_3:75089861-75089880 | Msa1124060:intron | 40.0% | |
| AAGAAAACCAGACTCAGCAA+TGG | - | chr7_3:75089918-75089937 | None:intergenic | 40.0% | |
| !!! | TGAGTCTGGTTTTCTTCTCA+AGG | + | chr7_3:75089922-75089941 | Msa1124060:CDS | 40.0% |
| !! | TTAGAGGCATTGTTGTTACG+TGG | + | chr7_3:75089959-75089978 | Msa1124060:CDS | 40.0% |
| CTGATCATGATGTTGCTACA+AGG | + | chr7_3:75090002-75090021 | Msa1124060:CDS | 40.0% | |
| TTGCTACAAGGTTTGTCTTG+TGG | + | chr7_3:75090014-75090033 | Msa1124060:intron | 40.0% | |
| CGCATTATCTTCAGCCTTTA+TGG | - | chr7_3:75090312-75090331 | None:intergenic | 40.0% | |
| GCTGAAGATAATGCGAGTAA+GGG | + | chr7_3:75090317-75090336 | Msa1124060:CDS | 40.0% | |
| CATTATGTGCAAGATGGTCA+GGG | - | chr7_3:75090391-75090410 | None:intergenic | 40.0% | |
| ACATTATGTGCAAGATGGTC+AGG | - | chr7_3:75090392-75090411 | None:intergenic | 40.0% | |
| AGCTTCACTACAACTGTTCA+AGG | - | chr7_3:75090471-75090490 | None:intergenic | 40.0% | |
| TGAAGCTCTTAAGATCGATG+AGG | + | chr7_3:75090484-75090503 | Msa1124060:CDS | 40.0% | |
| !! | TATGGATTCGGTGCCTTACA+GGG | + | chr7_3:75087261-75087280 | Msa1124060:CDS | 45.0% |
| ! | GTCTGAAACAATCCCCTGTA+AGG | - | chr7_3:75087277-75087296 | None:intergenic | 45.0% |
| !! | CAACCCTTTGTTTCTGCTTC+AGG | + | chr7_3:75087343-75087362 | Msa1124060:CDS | 45.0% |
| GTGCAGCATGTTGCATGAAT+TGG | + | chr7_3:75087674-75087693 | Msa1124060:intron | 45.0% | |
| GACACACAAGGAAATCATGC+AGG | - | chr7_3:75088101-75088120 | None:intergenic | 45.0% | |
| ! | GGTTTGAGTTCATCAGAGAG+AGG | + | chr7_3:75088327-75088346 | Msa1124060:intron | 45.0% |
| TGAGTTCATCAGAGAGAGGA+TGG | + | chr7_3:75088331-75088350 | Msa1124060:intron | 45.0% | |
| TTCATCAGAGAGAGGATGGA+GGG | + | chr7_3:75088335-75088354 | Msa1124060:intron | 45.0% | |
| ! | TCTTGTATTGGCGTTGAAGC+TGG | + | chr7_3:75088526-75088545 | Msa1124060:intron | 45.0% |
| !!! | GTTGCCTGACCAGTCTTTTT+TGG | + | chr7_3:75088806-75088825 | Msa1124060:intron | 45.0% |
| TTCTGATCTGGTGGAAAACC+AGG | + | chr7_3:75088829-75088848 | Msa1124060:intron | 45.0% | |
| AACAACTCAGCTGCATTTCC+TGG | - | chr7_3:75088850-75088869 | None:intergenic | 45.0% | |
| ! | GGGAAAGGTATGCTTCTGAA+AGG | - | chr7_3:75088957-75088976 | None:intergenic | 45.0% |
| ! | TTCAGAAGCATACCTTTCCC+AGG | + | chr7_3:75088957-75088976 | Msa1124060:CDS | 45.0% |
| CAGTTCTTCGCAAGTTATGC+AGG | + | chr7_3:75088983-75089002 | Msa1124060:CDS | 45.0% | |
| ! | TTTCAAAAAGCACGGGGATG+GGG | - | chr7_3:75089031-75089050 | None:intergenic | 45.0% |
| ! | CTTTCAAAAAGCACGGGGAT+GGG | - | chr7_3:75089032-75089051 | None:intergenic | 45.0% |
| ! | ACTTTCAAAAAGCACGGGGA+TGG | - | chr7_3:75089033-75089052 | None:intergenic | 45.0% |
| !! | CCCCGTGCTTTTTGAAAGTT+TGG | + | chr7_3:75089034-75089053 | Msa1124060:intron | 45.0% |
| ! | AAGGGGCAAAATGTTGCTTC+TGG | - | chr7_3:75089151-75089170 | None:intergenic | 45.0% |
| !! | TTAGTTTTCCTCCTTCGTCC+GGG | + | chr7_3:75089252-75089271 | Msa1124060:intron | 45.0% |
| ACTAAGGGATAAGGAGTTGG+AGG | - | chr7_3:75089292-75089311 | None:intergenic | 45.0% | |
| GTATAGGATTTATGGGGGGT+TGG | - | chr7_3:75089333-75089352 | None:intergenic | 45.0% | |
| ! | TTGAGTGATTTGGGGTGATG+GGG | - | chr7_3:75089430-75089449 | None:intergenic | 45.0% |
| ! | GTTTGAGTGATTTGGGGTGA+TGG | - | chr7_3:75089432-75089451 | None:intergenic | 45.0% |
| ! | GAAGTTGGCTGACTCATAGA+GGG | - | chr7_3:75089621-75089640 | None:intergenic | 45.0% |
| ! | TGAAGTTGGCTGACTCATAG+AGG | - | chr7_3:75089622-75089641 | None:intergenic | 45.0% |
| TTTCTCTCCAGCATGCACTA+AGG | + | chr7_3:75089679-75089698 | Msa1124060:CDS | 45.0% | |
| GTTGTTACCTTAGTGCATGC+TGG | - | chr7_3:75089689-75089708 | None:intergenic | 45.0% | |
| ACAGCCCAAACCCAATACTT+AGG | - | chr7_3:75089785-75089804 | None:intergenic | 45.0% | |
| GTTCACTATGCTCAGGATCT+AGG | - | chr7_3:75090139-75090158 | None:intergenic | 45.0% | |
| GGCTGAAGATAATGCGAGTA+AGG | + | chr7_3:75090316-75090335 | Msa1124060:intron | 45.0% | |
| ! | TGTAAAGTGCTAGTCAGGCT+TGG | + | chr7_3:75090431-75090450 | Msa1124060:CDS | 45.0% |
| !! | AAATACAAAAAAAAAATAAA+TGG | - | chr7_3:75087390-75087409 | None:intergenic | 5.0% |
| !! | CTATGGATTCGGTGCCTTAC+AGG | + | chr7_3:75087260-75087279 | Msa1124060:CDS | 50.0% |
| !! | ATGGATTCGGTGCCTTACAG+GGG | + | chr7_3:75087262-75087281 | Msa1124060:CDS | 50.0% |
| GTCATTGTGGAGGACACACA+AGG | - | chr7_3:75088113-75088132 | None:intergenic | 50.0% | |
| GTTCATCAGAGAGAGGATGG+AGG | + | chr7_3:75088334-75088353 | Msa1124060:intron | 50.0% | |
| TCATCAGAGAGAGGATGGAG+GGG | + | chr7_3:75088336-75088355 | Msa1124060:intron | 50.0% | |
| GAAGAACTGAAGCCTGGGAA+AGG | - | chr7_3:75088972-75088991 | None:intergenic | 50.0% | |
| CTTGCGAAGAACTGAAGCCT+GGG | - | chr7_3:75088977-75088996 | None:intergenic | 50.0% | |
| ACTTGCGAAGAACTGAAGCC+TGG | - | chr7_3:75088978-75088997 | None:intergenic | 50.0% | |
| CTTCGCAAGTTATGCAGGTG+TGG | + | chr7_3:75088988-75089007 | Msa1124060:intron | 50.0% | |
| GATAAGGAGTTGGAGGTCCT+GGG | - | chr7_3:75089285-75089304 | None:intergenic | 50.0% | |
| ! | TGAGAAGTGTGAGGGAAGGA+GGG | - | chr7_3:75089400-75089419 | None:intergenic | 50.0% |
| ! | ATGAGAAGTGTGAGGGAAGG+AGG | - | chr7_3:75089401-75089420 | None:intergenic | 50.0% |
| ! | GAGATGAGAAGTGTGAGGGA+AGG | - | chr7_3:75089404-75089423 | None:intergenic | 50.0% |
| ! | GGAGGAGATGAGAAGTGTGA+GGG | - | chr7_3:75089408-75089427 | None:intergenic | 50.0% |
| ! | TGAGTGATTTGGGGTGATGG+GGG | - | chr7_3:75089429-75089448 | None:intergenic | 50.0% |
| CATAGAGGGACTGAGCTGTT+TGG | - | chr7_3:75089607-75089626 | None:intergenic | 50.0% | |
| GATCTAGGCGAAGACCTTTC+TGG | - | chr7_3:75090124-75090143 | None:intergenic | 50.0% | |
| ATGCGAGTAAGGGCAAGCTA+CGG | + | chr7_3:75090327-75090346 | Msa1124060:CDS | 50.0% | |
| ! | GCCTGTGTAAAGTGCTAGTC+AGG | + | chr7_3:75090426-75090445 | Msa1124060:CDS | 50.0% |
| GCCTGACTAGCACTTTACAC+AGG | - | chr7_3:75090430-75090449 | None:intergenic | 50.0% | |
| CACGGGGATGGGGTAATACT+TGG | - | chr7_3:75089021-75089040 | None:intergenic | 55.0% | |
| GTTCAAAACCCGGACGAAGG+AGG | - | chr7_3:75089263-75089282 | None:intergenic | 55.0% | |
| TGGGTTCAAAACCCGGACGA+AGG | - | chr7_3:75089266-75089285 | None:intergenic | 55.0% | |
| !!! | TTCGTCCGGGTTTTGAACCC+AGG | + | chr7_3:75089265-75089284 | Msa1124060:intron | 55.0% |
| GAGGTCCTGGGTTCAAAACC+CGG | - | chr7_3:75089273-75089292 | None:intergenic | 55.0% | |
| GGATAAGGAGTTGGAGGTCC+TGG | - | chr7_3:75089286-75089305 | None:intergenic | 55.0% | |
| ! | AGAAGTGTGAGGGAAGGAGG+GGG | - | chr7_3:75089398-75089417 | None:intergenic | 55.0% |
| ! | GAGAAGTGTGAGGGAAGGAG+GGG | - | chr7_3:75089399-75089418 | None:intergenic | 55.0% |
| ! | GGGAGGAGATGAGAAGTGTG+AGG | - | chr7_3:75089409-75089428 | None:intergenic | 55.0% |
| GGAGCTCTCTCAGCTATTGC+AGG | + | chr7_3:75089568-75089587 | Msa1124060:CDS | 55.0% | |
| TGCGAGTAAGGGCAAGCTAC+GGG | + | chr7_3:75090328-75090347 | Msa1124060:CDS | 55.0% | |
| GGTGGCAGTGGAGGAATTCA+AGG | + | chr7_3:75090349-75090368 | Msa1124060:CDS | 55.0% | |
| !! | GTGATTTGGGGTGATGGGGG+AGG | - | chr7_3:75089426-75089445 | None:intergenic | 60.0% |
| !! | GAGGGTGCCATTGCTGAGTC+TGG | + | chr7_3:75089908-75089927 | Msa1124060:CDS | 60.0% |
| GAGTAAGGGCAAGCTACGGG+TGG | + | chr7_3:75090331-75090350 | Msa1124060:CDS | 60.0% | |
| GTGCTAGTCAGGCTTGGCAG+AGG | + | chr7_3:75090437-75090456 | Msa1124060:CDS | 60.0% | |
| GTGGTCACGAGTCACGACCC+AGG | - | chr7_3:75088044-75088063 | None:intergenic | 65.0% | |
| GGGGGGTTGGGTAGCTGAAC+TGG | - | chr7_3:75089320-75089339 | None:intergenic | 65.0% | |
| GAGGGGGATGAGTGGCGCAA+TGG | - | chr7_3:75089382-75089401 | None:intergenic | 65.0% | |
| GAGGGAAGGAGGGGGATGAG+TGG | - | chr7_3:75089390-75089409 | None:intergenic | 65.0% | |
| CAAGCTACGGGTGGCAGTGG+AGG | + | chr7_3:75090340-75090359 | Msa1124060:CDS | 65.0% | |
| GGGCAAGCTACGGGTGGCAG+TGG | + | chr7_3:75090337-75090356 | Msa1124060:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 75087118 | 75090529 | 75087118 | ID=Msa1124060;Name=Msa1124060 |
| chr7_3 | mRNA | 75087118 | 75090529 | 75087118 | ID=Msa1124060-mRNA-1;Parent=Msa1124060;Name=Msa1124060-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|1|0.83|1|1|1|6|0|357 |
| chr7_3 | exon | 75087118 | 75087364 | 75087118 | ID=Msa1124060-mRNA-1:exon:20183;Parent=Msa1124060-mRNA-1 |
| chr7_3 | exon | 75088851 | 75089004 | 75088851 | ID=Msa1124060-mRNA-1:exon:20184;Parent=Msa1124060-mRNA-1 |
| chr7_3 | exon | 75089499 | 75089700 | 75089499 | ID=Msa1124060-mRNA-1:exon:20185;Parent=Msa1124060-mRNA-1 |
| chr7_3 | exon | 75089863 | 75090023 | 75089863 | ID=Msa1124060-mRNA-1:exon:20186;Parent=Msa1124060-mRNA-1 |
| chr7_3 | exon | 75090115 | 75090208 | 75090115 | ID=Msa1124060-mRNA-1:exon:20187;Parent=Msa1124060-mRNA-1 |
| chr7_3 | exon | 75090317 | 75090529 | 75090317 | ID=Msa1124060-mRNA-1:exon:20188;Parent=Msa1124060-mRNA-1 |
| chr7_3 | CDS | 75087118 | 75087364 | 75087118 | ID=Msa1124060-mRNA-1:cds;Parent=Msa1124060-mRNA-1 |
| chr7_3 | CDS | 75088851 | 75089004 | 75088851 | ID=Msa1124060-mRNA-1:cds;Parent=Msa1124060-mRNA-1 |
| chr7_3 | CDS | 75089499 | 75089700 | 75089499 | ID=Msa1124060-mRNA-1:cds;Parent=Msa1124060-mRNA-1 |
| chr7_3 | CDS | 75089863 | 75090023 | 75089863 | ID=Msa1124060-mRNA-1:cds;Parent=Msa1124060-mRNA-1 |
| chr7_3 | CDS | 75090115 | 75090208 | 75090115 | ID=Msa1124060-mRNA-1:cds;Parent=Msa1124060-mRNA-1 |
| chr7_3 | CDS | 75090317 | 75090529 | 75090317 | ID=Msa1124060-mRNA-1:cds;Parent=Msa1124060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
