Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143240 | XP_003625819.1 | 92.601 | 419 | 2 | 3 | 1 | 419 | 1 | 390 | 0.0 | 782 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143240 | sp|Q8L7R3|LPCT1_ARATH | 57.674 | 430 | 115 | 5 | 5 | 409 | 1 | 388 | 2.04e-173 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143240 | G7KQU5 | 92.601 | 419 | 2 | 3 | 1 | 419 | 1 | 390 | 0.0 | 782 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0143240 | 0.835924 | 1.263805e-56 | -8.615850e-47 |
| Msa0001950 | Msa0143240 | -0.832526 | 8.988709e-56 | -8.615850e-47 |
| Msa0017940 | Msa0143240 | -0.811040 | 8.541147e-51 | -8.615850e-47 |
| Msa0024680 | Msa0143240 | -0.819474 | 1.139499e-52 | -8.615850e-47 |
| Msa0027540 | Msa0143240 | -0.801079 | 1.066446e-48 | -8.615850e-47 |
| Msa0029540 | Msa0143240 | 0.823205 | 1.570052e-53 | -8.615850e-47 |
| Msa0030310 | Msa0143240 | -0.810053 | 1.395821e-50 | -8.615850e-47 |
| Msa0030380 | Msa0143240 | -0.807266 | 5.496031e-50 | -8.615850e-47 |
| Msa0032840 | Msa0143240 | 0.827066 | 1.920221e-54 | -8.615850e-47 |
| Msa0041620 | Msa0143240 | -0.813197 | 2.891027e-51 | -8.615850e-47 |
| Msa0049400 | Msa0143240 | 0.832116 | 1.135926e-55 | -8.615850e-47 |
| Msa0078000 | Msa0143240 | 0.801249 | 9.843711e-49 | -8.615850e-47 |
| Msa0095380 | Msa0143240 | -0.822160 | 2.748870e-53 | -8.615850e-47 |
| Msa0114540 | Msa0143240 | 0.808894 | 2.474994e-50 | -8.615850e-47 |
| Msa0120330 | Msa0143240 | -0.800483 | 1.411183e-48 | -8.615850e-47 |
| Msa0138970 | Msa0143240 | 0.831069 | 2.056982e-55 | -8.615850e-47 |
| Msa0140520 | Msa0143240 | 0.804308 | 2.299073e-49 | -8.615850e-47 |
| Msa0141830 | Msa0143240 | -0.834953 | 2.224002e-56 | -8.615850e-47 |
| Msa0143080 | Msa0143240 | -0.842699 | 2.205257e-58 | -8.615850e-47 |
| Msa0143240 | Msa0156650 | 0.826476 | 2.657082e-54 | -8.615850e-47 |
| Msa0143240 | Msa0162770 | 0.809454 | 1.877040e-50 | -8.615850e-47 |
| Msa0143240 | Msa0168100 | -0.813764 | 2.169787e-51 | -8.615850e-47 |
| Msa0143240 | Msa0168640 | 0.827399 | 1.598514e-54 | -8.615850e-47 |
| Msa0143240 | Msa0172350 | -0.840754 | 7.185879e-58 | -8.615850e-47 |
| Msa0143240 | Msa0173740 | -0.812157 | 4.882114e-51 | -8.615850e-47 |
| Msa0143240 | Msa0173820 | -0.812371 | 4.385710e-51 | -8.615850e-47 |
| Msa0143240 | Msa0183620 | -0.822672 | 2.089637e-53 | -8.615850e-47 |
| Msa0143240 | Msa0188680 | 0.833676 | 4.650853e-56 | -8.615850e-47 |
| Msa0143240 | Msa0194970 | -0.829514 | 4.934337e-55 | -8.615850e-47 |
| Msa0143240 | Msa0219250 | 0.809437 | 1.893469e-50 | -8.615850e-47 |
| Msa0143240 | Msa0222920 | -0.838078 | 3.560533e-57 | -8.615850e-47 |
| Msa0143240 | Msa0230550 | 0.821901 | 3.154768e-53 | -8.615850e-47 |
| Msa0143240 | Msa0236980 | -0.845335 | 4.331677e-59 | -8.615850e-47 |
| Msa0143240 | Msa0242680 | -0.816151 | 6.411529e-52 | -8.615850e-47 |
| Msa0143240 | Msa0246690 | -0.802985 | 4.326654e-49 | -8.615850e-47 |
| Msa0143240 | Msa0251250 | -0.800413 | 1.457941e-48 | -8.615850e-47 |
| Msa0143240 | Msa0258880 | 0.806589 | 7.644143e-50 | -8.615850e-47 |
| Msa0143240 | Msa0264350 | -0.812075 | 5.087509e-51 | -8.615850e-47 |
| Msa0143240 | Msa0267760 | -0.839378 | 1.642731e-57 | -8.615850e-47 |
| Msa0143240 | Msa0270220 | 0.830556 | 2.747184e-55 | -8.615850e-47 |
| Msa0143240 | Msa0272480 | 0.804088 | 2.555231e-49 | -8.615850e-47 |
| Msa0143240 | Msa0275030 | -0.816326 | 5.858818e-52 | -8.615850e-47 |
| Msa0143240 | Msa0275400 | 0.827177 | 1.806447e-54 | -8.615850e-47 |
| Msa0143240 | Msa0280900 | -0.809956 | 1.464604e-50 | -8.615850e-47 |
| Msa0143240 | Msa0294560 | 0.819197 | 1.317647e-52 | -8.615850e-47 |
| Msa0143240 | Msa0302450 | -0.820827 | 5.583100e-53 | -8.615850e-47 |
| Msa0143240 | Msa0307830 | 0.823932 | 1.061407e-53 | -8.615850e-47 |
| Msa0143240 | Msa0315240 | -0.802557 | 5.300874e-49 | -8.615850e-47 |
| Msa0143240 | Msa0320100 | -0.803783 | 2.956486e-49 | -8.615850e-47 |
| Msa0143240 | Msa0328210 | -0.851518 | 8.421583e-61 | -8.615850e-47 |
| Msa0143240 | Msa0387700 | -0.820648 | 6.137178e-53 | -8.615850e-47 |
| Msa0143240 | Msa0414950 | 0.838827 | 2.281330e-57 | -8.615850e-47 |
| Msa0143240 | Msa0415810 | -0.800988 | 1.113198e-48 | -8.615850e-47 |
| Msa0143240 | Msa0419640 | 0.800751 | 1.244021e-48 | -8.615850e-47 |
| Msa0143240 | Msa0423360 | 0.839281 | 1.740747e-57 | -8.615850e-47 |
| Msa0143240 | Msa0429520 | 0.821216 | 4.542162e-53 | -8.615850e-47 |
| Msa0143240 | Msa0431430 | -0.804656 | 1.945713e-49 | -8.615850e-47 |
| Msa0143240 | Msa0436280 | 0.869608 | 2.724911e-66 | -8.615850e-47 |
| Msa0143240 | Msa0460930 | -0.802475 | 5.512345e-49 | -8.615850e-47 |
| Msa0143240 | Msa0469910 | 0.862299 | 5.593426e-64 | -8.615850e-47 |
| Msa0143240 | Msa0476320 | -0.819905 | 9.084419e-53 | -8.615850e-47 |
| Msa0143240 | Msa0480320 | -0.828087 | 1.092527e-54 | -8.615850e-47 |
| Msa0143240 | Msa0520320 | -0.823617 | 1.257907e-53 | -8.615850e-47 |
| Msa0143240 | Msa0521310 | -0.838939 | 2.133955e-57 | -8.615850e-47 |
| Msa0143240 | Msa0521880 | -0.815971 | 7.032521e-52 | -8.615850e-47 |
| Msa0143240 | Msa0525340 | -0.815607 | 8.478841e-52 | -8.615850e-47 |
| Msa0143240 | Msa0526710 | -0.834536 | 2.831541e-56 | -8.615850e-47 |
| Msa0143240 | Msa0527590 | -0.804781 | 1.831774e-49 | -8.615850e-47 |
| Msa0143240 | Msa0535030 | -0.827279 | 1.707878e-54 | -8.615850e-47 |
| Msa0143240 | Msa0535060 | -0.819958 | 8.833132e-53 | -8.615850e-47 |
| Msa0143240 | Msa0553220 | 0.802219 | 6.224967e-49 | -8.615850e-47 |
| Msa0143240 | Msa0562300 | 0.853040 | 3.106833e-61 | -8.615850e-47 |
| Msa0143240 | Msa0575990 | 0.832568 | 8.777927e-56 | -8.615850e-47 |
| Msa0143240 | Msa0576100 | 0.839287 | 1.734211e-57 | -8.615850e-47 |
| Msa0143240 | Msa0581460 | -0.809483 | 1.850356e-50 | -8.615850e-47 |
| Msa0143240 | Msa0590680 | -0.822394 | 2.425250e-53 | -8.615850e-47 |
| Msa0143240 | Msa0591060 | -0.819749 | 9.861644e-53 | -8.615850e-47 |
| Msa0143240 | Msa0591770 | -0.847243 | 1.308015e-59 | -8.615850e-47 |
| Msa0143240 | Msa0642650 | -0.820389 | 7.040119e-53 | -8.615850e-47 |
| Msa0143240 | Msa0655660 | 0.807991 | 3.857017e-50 | -8.615850e-47 |
| Msa0143240 | Msa0669850 | -0.847292 | 1.268552e-59 | -8.615850e-47 |
| Msa0143240 | Msa0678860 | -0.816260 | 6.061245e-52 | -8.615850e-47 |
| Msa0143240 | Msa0681890 | -0.820482 | 6.702740e-53 | -8.615850e-47 |
| Msa0143240 | Msa0701860 | 0.801987 | 6.946978e-49 | -8.615850e-47 |
| Msa0143240 | Msa0707390 | -0.806904 | 6.558613e-50 | -8.615850e-47 |
| Msa0143240 | Msa0730180 | -0.801306 | 9.580521e-49 | -8.615850e-47 |
| Msa0143240 | Msa0743680 | -0.842138 | 3.104660e-58 | -8.615850e-47 |
| Msa0143240 | Msa0754720 | 0.823947 | 1.052780e-53 | -8.615850e-47 |
| Msa0143240 | Msa0756630 | 0.802918 | 4.466828e-49 | -8.615850e-47 |
| Msa0143240 | Msa0784620 | -0.825781 | 3.886222e-54 | -8.615850e-47 |
| Msa0143240 | Msa0790390 | 0.839083 | 1.958858e-57 | -8.615850e-47 |
| Msa0143240 | Msa0792790 | 0.823293 | 1.497366e-53 | -8.615850e-47 |
| Msa0143240 | Msa0824730 | -0.818993 | 1.466297e-52 | -8.615850e-47 |
| Msa0143240 | Msa0831580 | -0.828918 | 6.883669e-55 | -8.615850e-47 |
| Msa0143240 | Msa0845750 | -0.809768 | 1.606850e-50 | -8.615850e-47 |
| Msa0143240 | Msa0850960 | -0.807148 | 5.823404e-50 | -8.615850e-47 |
| Msa0143240 | Msa0863800 | -0.817641 | 2.968172e-52 | -8.615850e-47 |
| Msa0143240 | Msa0867050 | 0.801667 | 8.081317e-49 | -8.615850e-47 |
| Msa0143240 | Msa0883030 | -0.817534 | 3.137951e-52 | -8.615850e-47 |
| Msa0143240 | Msa0890250 | -0.818224 | 2.191571e-52 | -8.615850e-47 |
| Msa0143240 | Msa0903330 | -0.804425 | 2.174012e-49 | -8.615850e-47 |
| Msa0143240 | Msa0925160 | -0.802507 | 5.429072e-49 | -8.615850e-47 |
| Msa0143240 | Msa0947530 | 0.846633 | 1.920945e-59 | -8.615850e-47 |
| Msa0143240 | Msa0955260 | -0.807622 | 4.619364e-50 | -8.615850e-47 |
| Msa0143240 | Msa0966720 | 0.816040 | 6.787639e-52 | -8.615850e-47 |
| Msa0143240 | Msa0990520 | -0.819041 | 1.430388e-52 | -8.615850e-47 |
| Msa0143240 | Msa1004900 | 0.803458 | 3.452925e-49 | -8.615850e-47 |
| Msa0143240 | Msa1008060 | 0.805238 | 1.470403e-49 | -8.615850e-47 |
| Msa0143240 | Msa1028470 | 0.828554 | 8.428992e-55 | -8.615850e-47 |
| Msa0143240 | Msa1030570 | 0.810500 | 1.117889e-50 | -8.615850e-47 |
| Msa0143240 | Msa1044340 | -0.822850 | 1.899640e-53 | -8.615850e-47 |
| Msa0143240 | Msa1049510 | 0.806529 | 7.872018e-50 | -8.615850e-47 |
| Msa0143240 | Msa1067440 | 0.829527 | 4.896223e-55 | -8.615850e-47 |
| Msa0143240 | Msa1069660 | 0.887219 | 1.728583e-72 | -8.615850e-47 |
| Msa0143240 | Msa1079340 | 0.800346 | 1.504853e-48 | -8.615850e-47 |
| Msa0143240 | Msa1079370 | 0.849460 | 3.189014e-60 | -8.615850e-47 |
| Msa0143240 | Msa1082700 | -0.811345 | 7.335275e-51 | -8.615850e-47 |
| Msa0143240 | Msa1125490 | 0.888830 | 4.166811e-73 | -8.615850e-47 |
| Msa0143240 | Msa1125570 | 0.913469 | 5.935945e-84 | -8.615850e-47 |
| Msa0143240 | Msa1126120 | 0.832540 | 8.917898e-56 | -8.615850e-47 |
| Msa0143240 | Msa1130210 | 0.824574 | 7.497930e-54 | -8.615850e-47 |
| Msa0143240 | Msa1157420 | 0.811378 | 7.215263e-51 | -8.615850e-47 |
| Msa0143240 | Msa1159100 | -0.807638 | 4.584559e-50 | -8.615850e-47 |
| Msa0143240 | Msa1166010 | -0.804739 | 1.869504e-49 | -8.615850e-47 |
| Msa0143240 | Msa1171770 | 0.809851 | 1.542474e-50 | -8.615850e-47 |
| Msa0143240 | Msa1183390 | -0.800085 | 1.700842e-48 | -8.615850e-47 |
| Msa0143240 | Msa1193950 | 0.871445 | 6.797764e-67 | -8.615850e-47 |
| Msa0143240 | Msa1208890 | 0.813930 | 1.994271e-51 | -8.615850e-47 |
| Msa0143240 | Msa1217860 | -0.800701 | 1.273817e-48 | -8.615850e-47 |
| Msa0143240 | Msa1237030 | -0.827938 | 1.186690e-54 | -8.615850e-47 |
| Msa0143240 | Msa1246530 | 0.842837 | 2.025537e-58 | -8.615850e-47 |
| Msa0143240 | Msa1259070 | 0.801823 | 7.506369e-49 | -8.615850e-47 |
| Msa0143240 | Msa1269580 | 0.874262 | 7.747691e-68 | -8.615850e-47 |
| Msa0143240 | Msa1284520 | -0.809501 | 1.834067e-50 | -8.615850e-47 |
| Msa0143240 | Msa1362510 | -0.807954 | 3.926169e-50 | -8.615850e-47 |
| Msa0143240 | Msa1373510 | -0.849423 | 3.264907e-60 | -8.615850e-47 |
| Msa0143240 | Msa1382310 | -0.844218 | 8.663620e-59 | -8.615850e-47 |
| Msa0143240 | Msa1390310 | -0.833710 | 4.560754e-56 | -8.615850e-47 |
| Msa0143240 | Msa1400610 | 0.806822 | 6.825243e-50 | -8.615850e-47 |
| Msa0143240 | Msa1403580 | 0.844155 | 9.007496e-59 | -8.615850e-47 |
| Msa0143240 | Msa1403930 | 0.840960 | 6.347991e-58 | -8.615850e-47 |
| Msa0143240 | Msa1410760 | 0.802200 | 6.280940e-49 | -8.615850e-47 |
| Msa0143240 | Msa1415240 | 0.815292 | 9.963072e-52 | -8.615850e-47 |
| Msa0143240 | Msa1429360 | 0.866804 | 2.181629e-65 | -8.615850e-47 |
| Msa0143240 | Msa1439960 | -0.807272 | 5.482329e-50 | -8.615850e-47 |
| Msa0143240 | Msa1442220 | 0.833148 | 6.296978e-56 | -8.615850e-47 |
| Msa0143240 | Msa1443290 | 0.830436 | 2.940800e-55 | -8.615850e-47 |
| Msa0143240 | Msa1456650 | -0.808612 | 2.843670e-50 | -8.615850e-47 |
| Msa0143240 | Msa1461490 | -0.809797 | 1.584533e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143240 | MtrunA17_Chr7g0266281 | 92.365 | 406 | 2 | 3 | 1 | 406 | 1 | 377 | 0.0 | 756 |
| Msa0143240 | MtrunA17_Chr1g0154671 | 65.700 | 414 | 94 | 3 | 2 | 406 | 4 | 378 | 0.0 | 555 |
| Msa0143240 | MtrunA17_Chr8g0351021 | 29.252 | 294 | 177 | 8 | 89 | 382 | 75 | 337 | 3.31e-32 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143240 | AT1G80950.1 | 57.674 | 430 | 115 | 5 | 5 | 409 | 1 | 388 | 2.08e-174 | 493 |
| Msa0143240 | AT1G80950.2 | 57.611 | 427 | 114 | 5 | 5 | 406 | 1 | 385 | 3.30e-173 | 490 |
| Msa0143240 | AT2G45670.1 | 29.430 | 316 | 169 | 8 | 67 | 370 | 78 | 351 | 5.83e-35 | 136 |
| Msa0143240 | AT2G45670.2 | 26.222 | 225 | 119 | 6 | 67 | 279 | 78 | 267 | 1.25e-11 | 65.5 |
Find 168 sgRNAs with CRISPR-Local
Find 439 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGCTGCATTTATCTTTC+TGG | 0.085911 | 1_4:+2156608 | Msa0143240:three_prime_UTR |
| GCAATAATTAATGATTAATT+AGG | 0.116226 | 1_4:-2150220 | None:intergenic |
| AACATTATCGGCATACAATT+TGG | 0.149590 | 1_4:-2154665 | None:intergenic |
| GAACACCTATGTTAATATTT+TGG | 0.155055 | 1_4:-2156515 | None:intergenic |
| GATGGATAATACTAGTTAAT+TGG | 0.175907 | 1_4:-2150243 | None:intergenic |
| CCCGCTTGGGATTCCATATC+TGG | 0.187030 | 1_4:+2153362 | Msa0143240:CDS |
| TCGGATTTCAAGGGTGTTTC+AGG | 0.208708 | 1_4:+2152153 | Msa0143240:CDS |
| TATTTATTCAGTGTTGTTCT+TGG | 0.228650 | 1_4:-2156654 | None:intergenic |
| CAGCAATTAAAACACATTAT+TGG | 0.234609 | 1_4:-2156183 | None:intergenic |
| CCTGATGTATCTATAGTTAT+AGG | 0.241759 | 1_4:+2156485 | Msa0143240:three_prime_UTR |
| TTCAGTGTTGTTCTTGGCTT+CGG | 0.242013 | 1_4:-2156648 | None:intergenic |
| GTATGGCTCTATTATTTATC+AGG | 0.245053 | 1_4:+2156372 | Msa0143240:three_prime_UTR |
| AGCAATTAAAACACATTATT+GGG | 0.270552 | 1_4:-2156182 | None:intergenic |
| CATTAAAATATACAAGCTTA+TGG | 0.271874 | 1_4:+2156590 | Msa0143240:three_prime_UTR |
| TCTTGTTCATCTTCACGATT+AGG | 0.275081 | 1_4:-2150701 | None:intergenic |
| CCTGGAAATAGCATCATTAA+TGG | 0.282235 | 1_4:-2152504 | None:intergenic |
| CATACTCCAGAGGCAGTTAT+TGG | 0.289794 | 1_4:-2156445 | None:intergenic |
| TGGTTTATTATGTGGTTTGT+AGG | 0.301047 | 1_4:+2150657 | Msa0143240:CDS |
| GGTGGTGGTTCCGTTTGGTT+TGG | 0.307275 | 1_4:-2150387 | None:intergenic |
| AATTTGATACTTTCTGATAT+CGG | 0.308202 | 1_4:+2155903 | Msa0143240:CDS |
| CAATAATTAATGATTAATTA+GGG | 0.315302 | 1_4:-2150219 | None:intergenic |
| ACCAGGTCTTCCCGTCTCTT+CGG | 0.316502 | 1_4:-2151567 | None:intergenic |
| ACAAGAGGATTATGCTCATT+TGG | 0.318547 | 1_4:+2150718 | Msa0143240:CDS |
| CTATGTTCAGCGGGAATCTA+AGG | 0.320808 | 1_4:+2152128 | Msa0143240:CDS |
| TCAGTGTTGTTCTTGGCTTC+GGG | 0.340527 | 1_4:-2156647 | None:intergenic |
| TATGTTCGCAACGATGTATA+CGG | 0.342263 | 1_4:+2150530 | Msa0143240:CDS |
| TTCCTCTTGTTGGTCTCATC+AGG | 0.346722 | 1_4:+2151797 | Msa0143240:CDS |
| CCAGGTCTTCCCGTCTCTTC+GGG | 0.351063 | 1_4:-2151566 | None:intergenic |
| TGAAATTATCAATCGTCTTT+CGG | 0.353125 | 1_4:-2155993 | None:intergenic |
| CCATTAATGATGCTATTTCC+AGG | 0.355192 | 1_4:+2152504 | Msa0143240:CDS |
| GTGGTGGTTCCGTTTGGTTT+GGG | 0.361677 | 1_4:-2150386 | None:intergenic |
| TTAATGGAGCAGATTCATTC+TGG | 0.361886 | 1_4:-2152488 | None:intergenic |
| ACATTATCGGCATACAATTT+GGG | 0.362174 | 1_4:-2154664 | None:intergenic |
| AACTGCCTCTGGAGTATGAT+TGG | 0.365179 | 1_4:+2156450 | Msa0143240:three_prime_UTR |
| TTCTTCTAACTCTTTCAATC+AGG | 0.368572 | 1_4:+2150829 | Msa0143240:CDS |
| GGTGGCGGTGGCGGTGGTGG+TGG | 0.377204 | 1_4:-2150402 | None:intergenic |
| GTGGCTAAGCTTCCTCTTGT+TGG | 0.377303 | 1_4:+2151787 | Msa0143240:CDS |
| TATACAACATTCTGAATTTG+AGG | 0.377675 | 1_4:-2156139 | None:intergenic |
| ACGATGGGAAGAGGAGAGTT+AGG | 0.381826 | 1_4:+2150554 | Msa0143240:CDS |
| GATTCTTGCTGTAACGGTTT+TGG | 0.383612 | 1_4:+2150634 | Msa0143240:CDS |
| TGGCTTGTATATTTATTGTA+TGG | 0.386477 | 1_4:+2156355 | Msa0143240:three_prime_UTR |
| AACGGTGGCGGTGGCGGTGG+TGG | 0.387336 | 1_4:-2150405 | None:intergenic |
| ATTTGATACTTTCTGATATC+GGG | 0.387507 | 1_4:+2155904 | Msa0143240:CDS |
| CTTCTGTTTCATGTCCCTGC+AGG | 0.388881 | 1_4:+2156300 | Msa0143240:three_prime_UTR |
| CCCAAGCGGGGCTAAATCTC+TGG | 0.389493 | 1_4:-2153349 | None:intergenic |
| GTTGTTCTTGGCTTCGGGAC+AGG | 0.392981 | 1_4:-2156642 | None:intergenic |
| CTTGTTCATCTTCACGATTA+GGG | 0.395614 | 1_4:-2150700 | None:intergenic |
| ATGTAGTTACACACGAGTTT+TGG | 0.395619 | 1_4:+2156036 | Msa0143240:three_prime_UTR |
| CAAGAGGATTATGCTCATTT+GGG | 0.398831 | 1_4:+2150719 | Msa0143240:CDS |
| TTTAAAATTACAGGAAGTAC+TGG | 0.402772 | 1_4:-2153317 | None:intergenic |
| CTATCCCTCACAGCAGGAAA+TGG | 0.406245 | 1_4:+2154636 | Msa0143240:CDS |
| GCGGTGGTGGTGGTTCCGTT+TGG | 0.408754 | 1_4:-2150392 | None:intergenic |
| ATGGATAATACTAGTTAATT+GGG | 0.418354 | 1_4:-2150242 | None:intergenic |
| ATCTAATCACGTGTCATACT+TGG | 0.418603 | 1_4:+2151598 | Msa0143240:CDS |
| ACGAACGGTGGCGGTGGCGG+TGG | 0.419217 | 1_4:-2150408 | None:intergenic |
| CGATAATGTTAGACGGTTGA+TGG | 0.421003 | 1_4:+2154678 | Msa0143240:CDS |
| AAGAGGAGAGTTAGGAGCTA+AGG | 0.421388 | 1_4:+2150562 | Msa0143240:CDS |
| TTATTCTTTAAATATATGAA+TGG | 0.422575 | 1_4:+2156079 | Msa0143240:three_prime_UTR |
| ACAGCAAGAATCACTCTAAT+CGG | 0.424110 | 1_4:-2150623 | None:intergenic |
| ATAAGTACTTACCCCAGATA+TGG | 0.424825 | 1_4:-2153375 | None:intergenic |
| TTCATATGCTATCGTATAGT+AGG | 0.429441 | 1_4:-2150267 | None:intergenic |
| ATCTAAGGCATCGGATTTCA+AGG | 0.439623 | 1_4:+2152143 | Msa0143240:CDS |
| TATTGGGTACATTATTTACA+TGG | 0.442536 | 1_4:-2156166 | None:intergenic |
| CATCAACCGTCTAACATTAT+CGG | 0.444546 | 1_4:-2154677 | None:intergenic |
| ACCAGAGATTTAGCCCCGCT+TGG | 0.445067 | 1_4:+2153348 | Msa0143240:CDS |
| GTCACGAACGGTGGCGGTGG+CGG | 0.447445 | 1_4:-2150411 | None:intergenic |
| CTTCCCGTCTCTTCGGGCTG+AGG | 0.450315 | 1_4:-2151560 | None:intergenic |
| CTCCTTCCATTCAAGACTGG+TGG | 0.450968 | 1_4:+2153278 | Msa0143240:CDS |
| AGAAGTGTTATTGTTAAGTG+TGG | 0.451603 | 1_4:+2150752 | Msa0143240:CDS |
| TCTATGAACAACAATGATGA+AGG | 0.458558 | 1_4:+2150325 | Msa0143240:exon |
| GGTTTATTATGTGGTTTGTA+GGG | 0.460729 | 1_4:+2150658 | Msa0143240:CDS |
| GCAGAAGGTACAACCACAAA+TGG | 0.460753 | 1_4:+2153248 | Msa0143240:intron |
| ATGTATCCAATAACTGCCTC+TGG | 0.460913 | 1_4:+2156439 | Msa0143240:three_prime_UTR |
| CTGAGATTATCTTAGATTCA+CGG | 0.462834 | 1_4:-2150170 | None:intergenic |
| GTTCCCAAGCTTTGTTGCTA+AGG | 0.464733 | 1_4:+2151646 | Msa0143240:CDS |
| GCGGGGCTAAATCTCTGGTA+AGG | 0.469915 | 1_4:-2153344 | None:intergenic |
| CCAGAGATTTAGCCCCGCTT+GGG | 0.471933 | 1_4:+2153349 | Msa0143240:CDS |
| TTCCTCCTTCCATTCAAGAC+TGG | 0.472216 | 1_4:+2153275 | Msa0143240:CDS |
| TAGCTCCGCCGCGGTGGTGA+TGG | 0.474729 | 1_4:-2150480 | None:intergenic |
| CAAACCTTAGCAACAAAGCT+TGG | 0.475847 | 1_4:-2151650 | None:intergenic |
| ATGCGGCGAATTTCTTCTCT+AGG | 0.476450 | 1_4:-2150508 | None:intergenic |
| GGTGGTGATGGTTGTGGTGG+TGG | 0.476569 | 1_4:-2150468 | None:intergenic |
| ATTATGCTCATTTGGGTGGG+TGG | 0.476792 | 1_4:+2150726 | Msa0143240:CDS |
| TGCTGTGAGGGATAGTATAT+AGG | 0.479278 | 1_4:-2154628 | None:intergenic |
| ACTGCCTCTGGAGTATGATT+GGG | 0.480482 | 1_4:+2156451 | Msa0143240:three_prime_UTR |
| TAGAGTGATTCTTGCTGTAA+CGG | 0.482759 | 1_4:+2150628 | Msa0143240:CDS |
| TTGTTCTTGGCTTCGGGACA+GGG | 0.484649 | 1_4:-2156641 | None:intergenic |
| CCGCTTGGGATTCCATATCT+GGG | 0.486087 | 1_4:+2153363 | Msa0143240:CDS |
| AAACCTCAGCCCGAAGAGAC+GGG | 0.491484 | 1_4:+2151557 | Msa0143240:CDS |
| CCCGAAGAGACGGGAAGACC+TGG | 0.496793 | 1_4:+2151566 | Msa0143240:CDS |
| AAACCTTAGCAACAAAGCTT+GGG | 0.500224 | 1_4:-2151649 | None:intergenic |
| AAGGAGGAAATCTCCATTTG+TGG | 0.502715 | 1_4:-2153261 | None:intergenic |
| GTGGTTCCGTTTGGTTTGGG+TGG | 0.506330 | 1_4:-2150383 | None:intergenic |
| ATCTACCATGCTGCTCTCAA+TGG | 0.506695 | 1_4:+2155942 | Msa0143240:CDS |
| CATTTATCTTTCTGGTGCTG+AGG | 0.507529 | 1_4:+2156616 | Msa0143240:three_prime_UTR |
| CAAACCTCAGCCCGAAGAGA+CGG | 0.512886 | 1_4:+2151556 | Msa0143240:CDS |
| ATGCTCATTTGGGTGGGTGG+AGG | 0.521233 | 1_4:+2150729 | Msa0143240:CDS |
| GTATACGGGACGATGGGAAG+AGG | 0.523782 | 1_4:+2150545 | Msa0143240:CDS |
| AACAACAATGATGAAGGGGT+TGG | 0.524505 | 1_4:+2150331 | Msa0143240:exon |
| CCTATAACTATAGATACATC+AGG | 0.532371 | 1_4:-2156485 | None:intergenic |
| ATCGTCACGAACGGTGGCGG+TGG | 0.532744 | 1_4:-2150414 | None:intergenic |
| TGCTATCGTATAGTAGGAGA+TGG | 0.533340 | 1_4:-2150261 | None:intergenic |
| CAAAATCACTCTGATACCAC+TGG | 0.534381 | 1_4:+2155334 | Msa0143240:CDS |
| CTATGAACAACAATGATGAA+GGG | 0.536298 | 1_4:+2150326 | Msa0143240:exon |
| GTCTTGTAGCTCCGCCGCGG+TGG | 0.537793 | 1_4:-2150486 | None:intergenic |
| TCTCTCCAAAATATTAACAT+AGG | 0.539595 | 1_4:+2156510 | Msa0143240:three_prime_UTR |
| CCAGATATGGAATCCCAAGC+GGG | 0.540197 | 1_4:-2153362 | None:intergenic |
| CGCCGCGGTGGTGATGGTTG+TGG | 0.540201 | 1_4:-2150474 | None:intergenic |
| TCAAAACCACCCAAACCAAA+CGG | 0.542315 | 1_4:+2150377 | Msa0143240:CDS |
| CATTGGGAAAACAAACCTGC+AGG | 0.542319 | 1_4:-2156315 | None:intergenic |
| AAATATTAAATAGCAAGAAA+CGG | 0.544036 | 1_4:-2156557 | None:intergenic |
| CGTATCCGAAGAACTAGCAT+TGG | 0.545566 | 1_4:-2156332 | None:intergenic |
| TCTTTCGGACGCAAAACACT+AGG | 0.546460 | 1_4:-2155978 | None:intergenic |
| GAGGATTATGCTCATTTGGG+TGG | 0.550330 | 1_4:+2150722 | Msa0143240:CDS |
| GAAGTGTTATTGTTAAGTGT+GGG | 0.550562 | 1_4:+2150753 | Msa0143240:CDS |
| AACCACCAGTCTTGAATGGA+AGG | 0.550568 | 1_4:-2153280 | None:intergenic |
| GATTGATAATTTCATGATCC+CGG | 0.550860 | 1_4:+2156002 | Msa0143240:exon |
| ATCATCCATTTCCTGCTGTG+AGG | 0.561663 | 1_4:-2154641 | None:intergenic |
| TCATCCATTTCCTGCTGTGA+GGG | 0.563139 | 1_4:-2154640 | None:intergenic |
| TGGTTGCATCTATGTTCAGC+GGG | 0.565814 | 1_4:+2152119 | Msa0143240:CDS |
| ACTACATATCAATTGACTCC+GGG | 0.567747 | 1_4:-2156020 | None:intergenic |
| ATGTTCGCAACGATGTATAC+GGG | 0.570685 | 1_4:+2150531 | Msa0143240:CDS |
| GTATCCGAAGAACTAGCATT+GGG | 0.570806 | 1_4:-2156331 | None:intergenic |
| ATGCTAGTTCTTCGGATACG+TGG | 0.572102 | 1_4:+2156335 | Msa0143240:three_prime_UTR |
| AACGATGTATACGGGACGAT+GGG | 0.575513 | 1_4:+2150539 | Msa0143240:CDS |
| AGGATTATGCTCATTTGGGT+GGG | 0.576961 | 1_4:+2150723 | Msa0143240:CDS |
| ACGATCGTCACGAACGGTGG+CGG | 0.579269 | 1_4:-2150417 | None:intergenic |
| AGTGAATCGGATTTGAGAAG+AGG | 0.583170 | 1_4:-2150440 | None:intergenic |
| TACATCGTTGCGAACATATG+CGG | 0.583809 | 1_4:-2150525 | None:intergenic |
| AGCAACAAAGCTTGGGAACG+AGG | 0.583959 | 1_4:-2151642 | None:intergenic |
| TCGGACGCAAAACACTAGGC+AGG | 0.584355 | 1_4:-2155974 | None:intergenic |
| CGCGGTGGTGATGGTTGTGG+TGG | 0.594441 | 1_4:-2150471 | None:intergenic |
| TTGGTTGCATCTATGTTCAG+CGG | 0.596574 | 1_4:+2152118 | Msa0143240:CDS |
| CGGGGCTAAATCTCTGGTAA+GGG | 0.598199 | 1_4:-2153343 | None:intergenic |
| TAATCGTGAAGATGAACAAG+AGG | 0.604391 | 1_4:+2150703 | Msa0143240:CDS |
| TGAATGGACAGCTCACGTGA+GGG | 0.605552 | 1_4:+2156095 | Msa0143240:three_prime_UTR |
| TATATACTATCCCTCACAGC+AGG | 0.605563 | 1_4:+2154630 | Msa0143240:CDS |
| CGCTTGGGATTCCATATCTG+GGG | 0.609507 | 1_4:+2153364 | Msa0143240:CDS |
| AACTACATATCAATTGACTC+CGG | 0.612495 | 1_4:-2156021 | None:intergenic |
| TCAGCGGGAATCTAAGGCAT+CGG | 0.612555 | 1_4:+2152134 | Msa0143240:CDS |
| ATGAATGGACAGCTCACGTG+AGG | 0.613596 | 1_4:+2156094 | Msa0143240:three_prime_UTR |
| TATGAACAACAATGATGAAG+GGG | 0.614604 | 1_4:+2150327 | Msa0143240:exon |
| AAACAGAAGATTCAGATACA+TGG | 0.616949 | 1_4:-2156286 | None:intergenic |
| GGTGGTGGAAGAGAGTGAAT+CGG | 0.617416 | 1_4:-2150453 | None:intergenic |
| CACCACAACCATCACCACCG+CGG | 0.617640 | 1_4:+2150472 | Msa0143240:CDS |
| CAACGATGTATACGGGACGA+TGG | 0.619929 | 1_4:+2150538 | Msa0143240:CDS |
| GAATGGACAGCTCACGTGAG+GGG | 0.644731 | 1_4:+2156096 | Msa0143240:three_prime_UTR |
| TGATTAGATATTATTACACC+AGG | 0.645827 | 1_4:-2151584 | None:intergenic |
| ATTGGGAAAACAAACCTGCA+GGG | 0.647101 | 1_4:-2156314 | None:intergenic |
| AAGAGGACGATCGTCACGAA+CGG | 0.648748 | 1_4:-2150423 | None:intergenic |
| TATTACCATTGAGAGCAGCA+TGG | 0.649402 | 1_4:-2155947 | None:intergenic |
| AGGACGATCGTCACGAACGG+TGG | 0.650813 | 1_4:-2150420 | None:intergenic |
| TGTATGCCGATAATGTTAGA+CGG | 0.651296 | 1_4:+2154671 | Msa0143240:CDS |
| TGATACCACTGGAAAGTCTG+TGG | 0.654924 | 1_4:+2155345 | Msa0143240:CDS |
| CACCAGTCTTGAATGGAAGG+AGG | 0.655112 | 1_4:-2153277 | None:intergenic |
| CACCTGATGAGACCAACAAG+AGG | 0.657451 | 1_4:-2151799 | None:intergenic |
| CCCAGATATGGAATCCCAAG+CGG | 0.662668 | 1_4:-2153363 | None:intergenic |
| GCTGAACATAGATGCAACCA+AGG | 0.665052 | 1_4:-2152116 | None:intergenic |
| CACAACCATCACCACCGCGG+CGG | 0.665087 | 1_4:+2150475 | Msa0143240:CDS |
| TCTAAGGCATCGGATTTCAA+GGG | 0.666480 | 1_4:+2152144 | Msa0143240:CDS |
| TAGACGGTTGATGGCTACTG+AGG | 0.676874 | 1_4:+2154687 | Msa0143240:CDS |
| TATAATTTACAAACTGACAG+AGG | 0.676920 | 1_4:-2154588 | None:intergenic |
| AAATCCCAATCATACTCCAG+AGG | 0.683916 | 1_4:-2156455 | None:intergenic |
| TCCATCTATGAAGAGATCAG+TGG | 0.684513 | 1_4:+2151768 | Msa0143240:intron |
| GACAGAGGAGAAATATCACA+TGG | 0.695658 | 1_4:-2154573 | None:intergenic |
| TAGGTCTTGTAGCTCCGCCG+CGG | 0.700267 | 1_4:-2150489 | None:intergenic |
| CAGATATGGAATCCCAAGCG+GGG | 0.704694 | 1_4:-2153361 | None:intergenic |
| GTCATCCACAGACTTTCCAG+TGG | 0.716069 | 1_4:-2155350 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATAATTAATGATTAATTA+GGG | - | chr1_4:2150222-2150241 | None:intergenic | 10.0% |
| !!! | TAATTTTAAGATAAATTTCA+AGG | - | chr1_4:2154028-2154047 | None:intergenic | 10.0% |
| !! | ATAAATTATATATTCAAACA+TGG | + | chr1_4:2155120-2155139 | Msa0143240:intron | 10.0% |
| !! | TTATTCTTTAAATATATGAA+TGG | + | chr1_4:2156079-2156098 | Msa0143240:three_prime_UTR | 10.0% |
| !! | GCAATAATTAATGATTAATT+AGG | - | chr1_4:2150223-2150242 | None:intergenic | 15.0% |
| !!! | TTTTCATTTTTGGATTTTAT+TGG | + | chr1_4:2150798-2150817 | Msa0143240:CDS | 15.0% |
| !!! | TTTTTATTAGCATCTTTAAT+TGG | + | chr1_4:2150950-2150969 | Msa0143240:intron | 15.0% |
| !!! | TTTTATTAGCATCTTTAATT+GGG | + | chr1_4:2150951-2150970 | Msa0143240:intron | 15.0% |
| !!! | TTACTTTGAAATATAAGATA+TGG | + | chr1_4:2153674-2153693 | Msa0143240:intron | 15.0% |
| !!! | TACTTTGAAATATAAGATAT+GGG | + | chr1_4:2153675-2153694 | Msa0143240:intron | 15.0% |
| !!! | CATTTTTATGCTAATTTAAT+TGG | + | chr1_4:2154478-2154497 | Msa0143240:intron | 15.0% |
| !! | AGTAATGAGATAAAAATAAA+AGG | - | chr1_4:2155649-2155668 | None:intergenic | 15.0% |
| !! | TACATTAGAAATAATCAAAA+AGG | - | chr1_4:2155866-2155885 | None:intergenic | 15.0% |
| !! | AAATATTAAATAGCAAGAAA+CGG | - | chr1_4:2156560-2156579 | None:intergenic | 15.0% |
| !!! | TAATGATTAATTAGGGTTTT+TGG | - | chr1_4:2150215-2150234 | None:intergenic | 20.0% |
| !! | ATGGATAATACTAGTTAATT+GGG | - | chr1_4:2150245-2150264 | None:intergenic | 20.0% |
| !! | TTGTTCAATTTCAATTCATT+AGG | + | chr1_4:2150881-2150900 | Msa0143240:intron | 20.0% |
| !! | TTATTATGAAGAAGTAAAGT+TGG | + | chr1_4:2151032-2151051 | Msa0143240:intron | 20.0% |
| !! | ACAGATATATATGTTCATTA+TGG | - | chr1_4:2151694-2151713 | None:intergenic | 20.0% |
| !! | AACACATGAATATAACTAAA+AGG | - | chr1_4:2152343-2152362 | None:intergenic | 20.0% |
| !!! | TTTTAAAAACAACAGACATT+GGG | - | chr1_4:2152946-2152965 | None:intergenic | 20.0% |
| !!! | ATTTTAAAAACAACAGACAT+TGG | - | chr1_4:2152947-2152966 | None:intergenic | 20.0% |
| !! | AAATATAACTATATGCCTTA+AGG | + | chr1_4:2153041-2153060 | Msa0143240:intron | 20.0% |
| !! | ATGAATAATTTGGATAATAC+AGG | - | chr1_4:2153212-2153231 | None:intergenic | 20.0% |
| !! | TTTGAGAAACATGAATAATT+TGG | - | chr1_4:2153222-2153241 | None:intergenic | 20.0% |
| !!! | TAAGGGTATTTTAAAATTAC+AGG | - | chr1_4:2153329-2153348 | None:intergenic | 20.0% |
| !! | CCAAAATATAACATATTTAC+CGG | - | chr1_4:2153484-2153503 | None:intergenic | 20.0% |
| !!! | ATATGTGTTGAACATATTTT+TGG | + | chr1_4:2153506-2153525 | Msa0143240:intron | 20.0% |
| !!! | TAAACATCCTGTTATTTTAT+CGG | + | chr1_4:2153537-2153556 | Msa0143240:intron | 20.0% |
| !! | AAAATAAATAGTTCCACATT+TGG | + | chr1_4:2153838-2153857 | Msa0143240:intron | 20.0% |
| !! | CAGAAATTTACCTTAAAATT+GGG | + | chr1_4:2153984-2154003 | Msa0143240:intron | 20.0% |
| !! | TGATACAAATTTAATGATAG+TGG | + | chr1_4:2154170-2154189 | Msa0143240:intron | 20.0% |
| !! | ATATCACTTTGTAATGTTAA+CGG | - | chr1_4:2154275-2154294 | None:intergenic | 20.0% |
| !! | ATTGTGTTTATTACATAAGA+CGG | - | chr1_4:2154512-2154531 | None:intergenic | 20.0% |
| !! | TCAATATTTCTTTCTTGAAA+AGG | + | chr1_4:2154730-2154749 | Msa0143240:intron | 20.0% |
| !! | TATAATTATATGTTCAACCA+TGG | + | chr1_4:2155037-2155056 | Msa0143240:intron | 20.0% |
| !!! | CAAAAAAGTGTTTGAATATT+AGG | + | chr1_4:2155160-2155179 | Msa0143240:intron | 20.0% |
| !! | AAAATAGTCAATACATAACA+TGG | - | chr1_4:2155755-2155774 | None:intergenic | 20.0% |
| !!! | ATGTATTGACTATTTTGTTT+AGG | + | chr1_4:2155759-2155778 | Msa0143240:intron | 20.0% |
| !! | AATTTGATACTTTCTGATAT+CGG | + | chr1_4:2155903-2155922 | Msa0143240:CDS | 20.0% |
| !! | AGCAATTAAAACACATTATT+GGG | - | chr1_4:2156185-2156204 | None:intergenic | 20.0% |
| !! | CATTAAAATATACAAGCTTA+TGG | + | chr1_4:2156590-2156609 | Msa0143240:three_prime_UTR | 20.0% |
| ! | GATGGATAATACTAGTTAAT+TGG | - | chr1_4:2150246-2150265 | None:intergenic | 25.0% |
| !! | AGTTTATCATATTCGATTTG+TGG | + | chr1_4:2150922-2150941 | Msa0143240:intron | 25.0% |
| ! | CCACAATATAAAAACTTTAG+AGG | - | chr1_4:2151237-2151256 | None:intergenic | 25.0% |
| !!! | CCTCTAAAGTTTTTATATTG+TGG | + | chr1_4:2151234-2151253 | Msa0143240:intron | 25.0% |
| ! | CAAAATATAATGAAACAAGC+TGG | - | chr1_4:2151469-2151488 | None:intergenic | 25.0% |
| ! | TGATTAGATATTATTACACC+AGG | - | chr1_4:2151587-2151606 | None:intergenic | 25.0% |
| ! | AAAATCCATAAAACTAAACC+AGG | - | chr1_4:2151849-2151868 | None:intergenic | 25.0% |
| !!! | GTTTAGTTTTATGGATTTTG+TGG | + | chr1_4:2151850-2151869 | Msa0143240:intron | 25.0% |
| !!! | TGCATTATTTTTTCATTGCA+AGG | + | chr1_4:2152037-2152056 | Msa0143240:intron | 25.0% |
| ! | AATATGAAAAGACCAACATA+GGG | - | chr1_4:2152287-2152306 | None:intergenic | 25.0% |
| ! | AAATATGAAAAGACCAACAT+AGG | - | chr1_4:2152288-2152307 | None:intergenic | 25.0% |
| ! | CAAATAATGTATAGTCTACA+GGG | - | chr1_4:2152393-2152412 | None:intergenic | 25.0% |
| ! | ACAAATAATGTATAGTCTAC+AGG | - | chr1_4:2152394-2152413 | None:intergenic | 25.0% |
| ! | ATTATTTGTTTAGTTGCAAC+TGG | + | chr1_4:2152405-2152424 | Msa0143240:intron | 25.0% |
| ! | GTAAGCTAAAGTTTGTATAT+TGG | - | chr1_4:2152689-2152708 | None:intergenic | 25.0% |
| !! | TGGGTCAAAAACATAAATTT+TGG | - | chr1_4:2152927-2152946 | None:intergenic | 25.0% |
| ! | ATTATGAAGTTACAAGGAAA+TGG | - | chr1_4:2153016-2153035 | None:intergenic | 25.0% |
| ! | TGTAAGATTATGAAGTTACA+AGG | - | chr1_4:2153022-2153041 | None:intergenic | 25.0% |
| !! | TTTCTCAAATATTTTGCAGA+AGG | + | chr1_4:2153233-2153252 | Msa0143240:intron | 25.0% |
| !! | TTTAAAATTACAGGAAGTAC+TGG | - | chr1_4:2153320-2153339 | None:intergenic | 25.0% |
| !! | CCGGTAAATATGTTATATTT+TGG | + | chr1_4:2153481-2153500 | Msa0143240:intron | 25.0% |
| !! | ATTTTATCGGTGTGTTTATA+TGG | + | chr1_4:2153550-2153569 | Msa0143240:intron | 25.0% |
| ! | GCAGAAATTTACCTTAAAAT+TGG | + | chr1_4:2153983-2154002 | Msa0143240:intron | 25.0% |
| !! | ACATAGCCAATAAACTTTTT+GGG | - | chr1_4:2154224-2154243 | None:intergenic | 25.0% |
| !! | AACATAGCCAATAAACTTTT+TGG | - | chr1_4:2154225-2154244 | None:intergenic | 25.0% |
| ! | TATCACTTTGTAATGTTAAC+GGG | - | chr1_4:2154274-2154293 | None:intergenic | 25.0% |
| !!! | TTCTAAGTTGATCTTAATGT+TGG | + | chr1_4:2154542-2154561 | Msa0143240:intron | 25.0% |
| ! | TATAATTTACAAACTGACAG+AGG | - | chr1_4:2154591-2154610 | None:intergenic | 25.0% |
| ! | TGAAAAGGTAGTTAAATAGT+TGG | + | chr1_4:2154745-2154764 | Msa0143240:intron | 25.0% |
| ! | ATCAACTTCAGCAATAAAAT+AGG | - | chr1_4:2154780-2154799 | None:intergenic | 25.0% |
| !! | TTTTTGCATTCAAAAGTTTG+AGG | + | chr1_4:2154916-2154935 | Msa0143240:intron | 25.0% |
| !! | TTTTTGCATTCAAAAGTTTG+AGG | + | chr1_4:2154916-2154935 | Msa0143240:intron | 25.0% |
| ! | TTTACATTATGCTTATACCA+TGG | - | chr1_4:2155057-2155076 | None:intergenic | 25.0% |
| ! | GTATGAAATTCATATTCGTT+TGG | + | chr1_4:2155417-2155436 | Msa0143240:intron | 25.0% |
| !! | CAAATTTTAAACATCCTGAA+TGG | + | chr1_4:2155538-2155557 | Msa0143240:intron | 25.0% |
| ! | ATTATTCTTAATCACCATTC+AGG | - | chr1_4:2155614-2155633 | None:intergenic | 25.0% |
| !! | ATTTTTATCTCATTACTGTC+TGG | + | chr1_4:2155652-2155671 | Msa0143240:intron | 25.0% |
| ! | CGATGTAACATTTATCTTAT+TGG | + | chr1_4:2155802-2155821 | Msa0143240:intron | 25.0% |
| ! | ATTTGATACTTTCTGATATC+GGG | + | chr1_4:2155904-2155923 | Msa0143240:CDS | 25.0% |
| ! | TGAAATTATCAATCGTCTTT+CGG | - | chr1_4:2155996-2156015 | None:intergenic | 25.0% |
| ! | TATACAACATTCTGAATTTG+AGG | - | chr1_4:2156142-2156161 | None:intergenic | 25.0% |
| ! | TATTGGGTACATTATTTACA+TGG | - | chr1_4:2156169-2156188 | None:intergenic | 25.0% |
| ! | CAGCAATTAAAACACATTAT+TGG | - | chr1_4:2156186-2156205 | None:intergenic | 25.0% |
| !!! | CAATAATGTGTTTTAATTGC+TGG | + | chr1_4:2156184-2156203 | Msa0143240:three_prime_UTR | 25.0% |
| !! | TGGCTTGTATATTTATTGTA+TGG | + | chr1_4:2156355-2156374 | Msa0143240:three_prime_UTR | 25.0% |
| ! | TCTCTCCAAAATATTAACAT+AGG | + | chr1_4:2156510-2156529 | Msa0143240:three_prime_UTR | 25.0% |
| !! | GAACACCTATGTTAATATTT+TGG | - | chr1_4:2156518-2156537 | None:intergenic | 25.0% |
| !! | TATTTATTCAGTGTTGTTCT+TGG | - | chr1_4:2156657-2156676 | None:intergenic | 25.0% |
| CTGAGATTATCTTAGATTCA+CGG | - | chr1_4:2150173-2150192 | None:intergenic | 30.0% | |
| TTCATATGCTATCGTATAGT+AGG | - | chr1_4:2150270-2150289 | None:intergenic | 30.0% | |
| TCTATGAACAACAATGATGA+AGG | + | chr1_4:2150325-2150344 | Msa0143240:exon | 30.0% | |
| CTATGAACAACAATGATGAA+GGG | + | chr1_4:2150326-2150345 | Msa0143240:exon | 30.0% | |
| TATGAACAACAATGATGAAG+GGG | + | chr1_4:2150327-2150346 | Msa0143240:exon | 30.0% | |
| ! | TGGTTTATTATGTGGTTTGT+AGG | + | chr1_4:2150657-2150676 | Msa0143240:CDS | 30.0% |
| ! | GGTTTATTATGTGGTTTGTA+GGG | + | chr1_4:2150658-2150677 | Msa0143240:CDS | 30.0% |
| !! | AGAAGTGTTATTGTTAAGTG+TGG | + | chr1_4:2150752-2150771 | Msa0143240:CDS | 30.0% |
| ! | GAAGTGTTATTGTTAAGTGT+GGG | + | chr1_4:2150753-2150772 | Msa0143240:CDS | 30.0% |
| ! | AGAGCTATGCTTTTCATTTT+TGG | + | chr1_4:2150788-2150807 | Msa0143240:CDS | 30.0% |
| TTCTTCTAACTCTTTCAATC+AGG | + | chr1_4:2150829-2150848 | Msa0143240:CDS | 30.0% | |
| ! | ATCATATTCGATTTGTGGTA+AGG | + | chr1_4:2150927-2150946 | Msa0143240:intron | 30.0% |
| ATCTTTAATTGGGATAAGTG+TGG | + | chr1_4:2150961-2150980 | Msa0143240:intron | 30.0% | |
| TCTTTAATTGGGATAAGTGT+GGG | + | chr1_4:2150962-2150981 | Msa0143240:intron | 30.0% | |
| AAAATGAGAGGTGGAATAAT+TGG | + | chr1_4:2151061-2151080 | Msa0143240:intron | 30.0% | |
| TAATTTCGCCACAATATTCA+AGG | - | chr1_4:2151126-2151145 | None:intergenic | 30.0% | |
| TTGAATATTGTGGCGAAATT+AGG | + | chr1_4:2151125-2151144 | Msa0143240:intron | 30.0% | |
| TGAATATTGTGGCGAAATTA+GGG | + | chr1_4:2151126-2151145 | Msa0143240:intron | 30.0% | |
| ! | CAGCAATATAAAGGCTTTAA+GGG | - | chr1_4:2151181-2151200 | None:intergenic | 30.0% |
| AATTTGTGGCAGCAATATAA+AGG | - | chr1_4:2151190-2151209 | None:intergenic | 30.0% | |
| ! | TTGCAGTTGTGATACTTTTA+CGG | + | chr1_4:2151208-2151227 | Msa0143240:intron | 30.0% |
| ! | TTTTATATTGTGGCTGCAAT+TGG | + | chr1_4:2151244-2151263 | Msa0143240:intron | 30.0% |
| TTTATATTGTGGCTGCAATT+GGG | + | chr1_4:2151245-2151264 | Msa0143240:intron | 30.0% | |
| CTAGTTAAGTTTATCGAAAC+TGG | + | chr1_4:2151342-2151361 | Msa0143240:intron | 30.0% | |
| ACTATTGGATGTATCTTAGT+TGG | + | chr1_4:2151426-2151445 | Msa0143240:intron | 30.0% | |
| GATGTATCTTAGTTGGTTAT+TGG | + | chr1_4:2151433-2151452 | Msa0143240:intron | 30.0% | |
| !! | AAGATTTTAACAGGACATTC+AGG | - | chr1_4:2151744-2151763 | None:intergenic | 30.0% |
| TGAATGTCCTGTTAAAATCT+TGG | + | chr1_4:2151743-2151762 | Msa0143240:intron | 30.0% | |
| !! | ATGGAATCCAAGATTTTAAC+AGG | - | chr1_4:2151753-2151772 | None:intergenic | 30.0% |
| !!! | CTTTTTTTATTAGTTCCTCC+TGG | + | chr1_4:2151828-2151847 | Msa0143240:intron | 30.0% |
| TGTTCCATTAAGTCAAACTA+GGG | + | chr1_4:2152359-2152378 | Msa0143240:intron | 30.0% | |
| !!! | GTTATCTTCCTTCCTTTTTT+GGG | + | chr1_4:2152526-2152545 | Msa0143240:intron | 30.0% |
| !!! | TTATCTTCCTTCCTTTTTTG+GGG | + | chr1_4:2152527-2152546 | Msa0143240:intron | 30.0% |
| TTCGTGTAGTTTAACTAAGT+TGG | + | chr1_4:2152591-2152610 | Msa0143240:intron | 30.0% | |
| TCGTGTAGTTTAACTAAGTT+GGG | + | chr1_4:2152592-2152611 | Msa0143240:intron | 30.0% | |
| TACGCCAGTTAGATTATATA+TGG | + | chr1_4:2152656-2152675 | Msa0143240:intron | 30.0% | |
| ACGCCAGTTAGATTATATAT+GGG | + | chr1_4:2152657-2152676 | Msa0143240:intron | 30.0% | |
| GATCCCATATATAATCTAAC+TGG | - | chr1_4:2152663-2152682 | None:intergenic | 30.0% | |
| ACTAAATGTGAAGAACCTTA+AGG | - | chr1_4:2153059-2153078 | None:intergenic | 30.0% | |
| GAGTTATTCTTTGTCACATA+TGG | + | chr1_4:2153102-2153121 | Msa0143240:intron | 30.0% | |
| AAACACACCGATAAAATAAC+AGG | - | chr1_4:2153547-2153566 | None:intergenic | 30.0% | |
| ! | GTGCGACAAATTCATAATTT+TGG | + | chr1_4:2153576-2153595 | Msa0143240:intron | 30.0% |
| TGAAATATAAGATATGGGTG+AGG | + | chr1_4:2153680-2153699 | Msa0143240:intron | 30.0% | |
| ! | AAAATTCTCTCTAGTTTCCT+AGG | + | chr1_4:2153719-2153738 | Msa0143240:intron | 30.0% |
| ! | AAATTCTCTCTAGTTTCCTA+GGG | + | chr1_4:2153720-2153739 | Msa0143240:intron | 30.0% |
| ! | ATGCGTGAGAATGTAAATTT+TGG | - | chr1_4:2153767-2153786 | None:intergenic | 30.0% |
| AAGATCATATCATCTTGAAG+TGG | + | chr1_4:2153789-2153808 | Msa0143240:intron | 30.0% | |
| GAAGAAACATATACCAAATG+TGG | - | chr1_4:2153854-2153873 | None:intergenic | 30.0% | |
| CATTTGGTATATGTTTCTTC+TGG | + | chr1_4:2153854-2153873 | Msa0143240:intron | 30.0% | |
| ! | AGTTTATTGGCTATGTTGAA+AGG | + | chr1_4:2154228-2154247 | Msa0143240:intron | 30.0% |
| ATCACTTTGTAATGTTAACG+GGG | - | chr1_4:2154273-2154292 | None:intergenic | 30.0% | |
| ! | TTTTTGTTACCCGCATTATA+TGG | + | chr1_4:2154350-2154369 | Msa0143240:intron | 30.0% |
| ATAGGTATTCCATATAATGC+GGG | - | chr1_4:2154362-2154381 | None:intergenic | 30.0% | |
| CATAGGTATTCCATATAATG+CGG | - | chr1_4:2154363-2154382 | None:intergenic | 30.0% | |
| !!! | TCCTTATTGTTTTGATGTGA+CGG | + | chr1_4:2154393-2154412 | Msa0143240:intron | 30.0% |
| TTGATAAATTGATGAACCCT+AGG | + | chr1_4:2154428-2154447 | Msa0143240:intron | 30.0% | |
| ACATTATCGGCATACAATTT+GGG | - | chr1_4:2154667-2154686 | None:intergenic | 30.0% | |
| AACATTATCGGCATACAATT+TGG | - | chr1_4:2154668-2154687 | None:intergenic | 30.0% | |
| AAGGTAGTTAAATAGTTGGA+AGG | + | chr1_4:2154749-2154768 | Msa0143240:intron | 30.0% | |
| !!! | GAGAATTGTTTTGATCAATC+TGG | + | chr1_4:2154870-2154889 | Msa0143240:intron | 30.0% |
| !!! | GAGAATTGTTTTGATCAATC+TGG | + | chr1_4:2154870-2154889 | Msa0143240:intron | 30.0% |
| ! | ATTAATTTTGTGACGCTTGT+TGG | + | chr1_4:2155076-2155095 | Msa0143240:intron | 30.0% |
| ATTGCCAGAATAGGTATTTA+CGG | + | chr1_4:2155251-2155270 | Msa0143240:intron | 30.0% | |
| TAAACCGTAAATACCTATTC+TGG | - | chr1_4:2155258-2155277 | None:intergenic | 30.0% | |
| TTTCTCGAATATTGTTTCAG+TGG | + | chr1_4:2155293-2155312 | Msa0143240:intron | 30.0% | |
| AAAAATAGTGCAAGACTTCT+TGG | - | chr1_4:2155466-2155485 | None:intergenic | 30.0% | |
| TACCTGTATTTATAGCCTAA+AGG | + | chr1_4:2155720-2155739 | Msa0143240:intron | 30.0% | |
| TACCTTTAGGCTATAAATAC+AGG | - | chr1_4:2155725-2155744 | None:intergenic | 30.0% | |
| ATAGTCAATACATAACATGG+AGG | - | chr1_4:2155752-2155771 | None:intergenic | 30.0% | |
| !! | ATTGACTATTTTGTTTAGGC+AGG | + | chr1_4:2155763-2155782 | Msa0143240:intron | 30.0% |
| !! | TTGACTATTTTGTTTAGGCA+GGG | + | chr1_4:2155764-2155783 | Msa0143240:intron | 30.0% |
| ! | TAATGTATGTTTTGCTTGCA+GGG | + | chr1_4:2155879-2155898 | Msa0143240:intron | 30.0% |
| ! | GATTGATAATTTCATGATCC+CGG | + | chr1_4:2156002-2156021 | Msa0143240:exon | 30.0% |
| ! | AACTACATATCAATTGACTC+CGG | - | chr1_4:2156024-2156043 | None:intergenic | 30.0% |
| AAACAGAAGATTCAGATACA+TGG | - | chr1_4:2156289-2156308 | None:intergenic | 30.0% | |
| ! | GTATGGCTCTATTATTTATC+AGG | + | chr1_4:2156372-2156391 | Msa0143240:three_prime_UTR | 30.0% |
| CCTATAACTATAGATACATC+AGG | - | chr1_4:2156488-2156507 | None:intergenic | 30.0% | |
| CCTGATGTATCTATAGTTAT+AGG | + | chr1_4:2156485-2156504 | Msa0143240:three_prime_UTR | 30.0% | |
| !!! | GTTTGGGTGGTTTTGAATTT+AGG | - | chr1_4:2150373-2150392 | None:intergenic | 35.0% |
| TATGTTCGCAACGATGTATA+CGG | + | chr1_4:2150530-2150549 | Msa0143240:CDS | 35.0% | |
| ACAGCAAGAATCACTCTAAT+CGG | - | chr1_4:2150626-2150645 | None:intergenic | 35.0% | |
| ! | TAGAGTGATTCTTGCTGTAA+CGG | + | chr1_4:2150628-2150647 | Msa0143240:CDS | 35.0% |
| !! | GGTTTTGGTGGTTTATTATG+TGG | + | chr1_4:2150649-2150668 | Msa0143240:CDS | 35.0% |
| CTTGTTCATCTTCACGATTA+GGG | - | chr1_4:2150703-2150722 | None:intergenic | 35.0% | |
| TCTTGTTCATCTTCACGATT+AGG | - | chr1_4:2150704-2150723 | None:intergenic | 35.0% | |
| TAATCGTGAAGATGAACAAG+AGG | + | chr1_4:2150703-2150722 | Msa0143240:CDS | 35.0% | |
| ACAAGAGGATTATGCTCATT+TGG | + | chr1_4:2150718-2150737 | Msa0143240:CDS | 35.0% | |
| CAAGAGGATTATGCTCATTT+GGG | + | chr1_4:2150719-2150738 | Msa0143240:CDS | 35.0% | |
| ! | TAAGTGTGGGAGATTTTACT+TGG | + | chr1_4:2150975-2150994 | Msa0143240:intron | 35.0% |
| ! | AAGTGTGGGAGATTTTACTT+GGG | + | chr1_4:2150976-2150995 | Msa0143240:intron | 35.0% |
| AGTTGGATAGCAAAAATGAG+AGG | + | chr1_4:2151049-2151068 | Msa0143240:intron | 35.0% | |
| GCAGCAATATAAAGGCTTTA+AGG | - | chr1_4:2151182-2151201 | None:intergenic | 35.0% | |
| AGTATCACAACTGCAATTTG+TGG | - | chr1_4:2151204-2151223 | None:intergenic | 35.0% | |
| TTATATTGTGGCTGCAATTG+GGG | + | chr1_4:2151246-2151265 | Msa0143240:intron | 35.0% | |
| TTGCGCATAACTCTAAACTA+CGG | - | chr1_4:2151279-2151298 | None:intergenic | 35.0% | |
| ! | TAGTCTTTTGAGCTATGACA+AGG | - | chr1_4:2151410-2151429 | None:intergenic | 35.0% |
| GTCATAGCTCAAAAGACTAT+TGG | + | chr1_4:2151411-2151430 | Msa0143240:intron | 35.0% | |
| ! | AGTTGGTTATTGGTTATTGC+CGG | + | chr1_4:2151443-2151462 | Msa0143240:intron | 35.0% |
| ATATAATGAAACAAGCTGGC+CGG | - | chr1_4:2151465-2151484 | None:intergenic | 35.0% | |
| TCTCTGCTTCATGTTTAACT+AGG | + | chr1_4:2151529-2151548 | Msa0143240:intron | 35.0% | |
| ATCTAATCACGTGTCATACT+TGG | + | chr1_4:2151598-2151617 | Msa0143240:CDS | 35.0% | |
| AAACCTTAGCAACAAAGCTT+GGG | - | chr1_4:2151652-2151671 | None:intergenic | 35.0% | |
| !!! | TTCCTCCTGGTTTAGTTTTA+TGG | + | chr1_4:2151841-2151860 | Msa0143240:intron | 35.0% |
| ATCCATAAAACTAAACCAGG+AGG | - | chr1_4:2151846-2151865 | None:intergenic | 35.0% | |
| AATGCAGCATTCTCATTTCA+CGG | - | chr1_4:2152002-2152021 | None:intergenic | 35.0% | |
| !! | GCAAGGTATTTTTCAGAACT+TGG | + | chr1_4:2152054-2152073 | Msa0143240:intron | 35.0% |
| ! | AGAGGAAATGATGGAAACAA+GGG | - | chr1_4:2152263-2152282 | None:intergenic | 35.0% |
| TGTATACTAATGTGCTCTAG+TGG | + | chr1_4:2152313-2152332 | Msa0143240:intron | 35.0% | |
| GTGTTCCATTAAGTCAAACT+AGG | + | chr1_4:2152358-2152377 | Msa0143240:intron | 35.0% | |
| ! | AAGACCCTAGTTTGACTTAA+TGG | - | chr1_4:2152366-2152385 | None:intergenic | 35.0% |
| TTAATGGAGCAGATTCATTC+TGG | - | chr1_4:2152491-2152510 | None:intergenic | 35.0% | |
| CCTGGAAATAGCATCATTAA+TGG | - | chr1_4:2152507-2152526 | None:intergenic | 35.0% | |
| !! | CCATTAATGATGCTATTTCC+AGG | + | chr1_4:2152504-2152523 | Msa0143240:CDS | 35.0% |
| AAAAAGGAAGGAAGATAACC+TGG | - | chr1_4:2152525-2152544 | None:intergenic | 35.0% | |
| !!! | GGTTATCTTCCTTCCTTTTT+TGG | + | chr1_4:2152525-2152544 | Msa0143240:intron | 35.0% |
| !!! | TATCTTCCTTCCTTTTTTGG+GGG | + | chr1_4:2152528-2152547 | Msa0143240:intron | 35.0% |
| ATAGCTCGTTTGTACTTGAT+AGG | + | chr1_4:2152726-2152745 | Msa0143240:intron | 35.0% | |
| TCGTTTGTACTTGATAGGTA+TGG | + | chr1_4:2152731-2152750 | Msa0143240:intron | 35.0% | |
| CGTTTGTACTTGATAGGTAT+GGG | + | chr1_4:2152732-2152751 | Msa0143240:intron | 35.0% | |
| GTTTGTACTTGATAGGTATG+GGG | + | chr1_4:2152733-2152752 | Msa0143240:intron | 35.0% | |
| TTTGTACTTGATAGGTATGG+GGG | + | chr1_4:2152734-2152753 | Msa0143240:intron | 35.0% | |
| AGTTACAAGGAAATGGACAT+GGG | - | chr1_4:2153009-2153028 | None:intergenic | 35.0% | |
| AAGTTACAAGGAAATGGACA+TGG | - | chr1_4:2153010-2153029 | None:intergenic | 35.0% | |
| ACATATGGTAACACTAGCAT+TGG | + | chr1_4:2153117-2153136 | Msa0143240:intron | 35.0% | |
| AAAAAACCACCAGTCTTGAA+TGG | - | chr1_4:2153287-2153306 | None:intergenic | 35.0% | |
| !!! | ATTCAAGACTGGTGGTTTTT+TGG | + | chr1_4:2153286-2153305 | Msa0143240:CDS | 35.0% |
| ATAAGTACTTACCCCAGATA+TGG | - | chr1_4:2153378-2153397 | None:intergenic | 35.0% | |
| AAGTTGAGTACAGAAGGATT+AGG | - | chr1_4:2153446-2153465 | None:intergenic | 35.0% | |
| ACTTAGAAGTTGAGTACAGA+AGG | - | chr1_4:2153452-2153471 | None:intergenic | 35.0% | |
| ! | ACTTCTAAGTTGCTTTGTAC+CGG | + | chr1_4:2153462-2153481 | Msa0143240:intron | 35.0% |
| TTGGTATATGTTTCTTCTGG+TGG | + | chr1_4:2153857-2153876 | Msa0143240:intron | 35.0% | |
| TTTCTCGGAGGAAAAATTTG+TGG | + | chr1_4:2153925-2153944 | Msa0143240:intron | 35.0% | |
| TTCTCGGAGGAAAAATTTGT+GGG | + | chr1_4:2153926-2153945 | Msa0143240:intron | 35.0% | |
| ! | GTTGACAACACCCAATTTTA+AGG | - | chr1_4:2153997-2154016 | None:intergenic | 35.0% |
| TTGCCACCCAAAAAGTTTAT+TGG | + | chr1_4:2154215-2154234 | Msa0143240:intron | 35.0% | |
| !! | TAGCCAATAAACTTTTTGGG+TGG | - | chr1_4:2154221-2154240 | None:intergenic | 35.0% |
| CGCATTATATGGAATACCTA+TGG | + | chr1_4:2154361-2154380 | Msa0143240:intron | 35.0% | |
| ATATGGAATACCTATGGACA+TGG | + | chr1_4:2154367-2154386 | Msa0143240:intron | 35.0% | |
| ATAAGGAATACCATGTCCAT+AGG | - | chr1_4:2154380-2154399 | None:intergenic | 35.0% | |
| CCATAAGTCATAGTTTCCTA+GGG | - | chr1_4:2154447-2154466 | None:intergenic | 35.0% | |
| ACCATAAGTCATAGTTTCCT+AGG | - | chr1_4:2154448-2154467 | None:intergenic | 35.0% | |
| ! | AAGTTGATCTTAATGTTGGC+AGG | + | chr1_4:2154546-2154565 | Msa0143240:intron | 35.0% |
| TGTATGCCGATAATGTTAGA+CGG | + | chr1_4:2154671-2154690 | Msa0143240:CDS | 35.0% | |
| CATCAACCGTCTAACATTAT+CGG | - | chr1_4:2154680-2154699 | None:intergenic | 35.0% | |
| !! | GGCTACTGAGGTATTTATTT+TGG | + | chr1_4:2154699-2154718 | Msa0143240:intron | 35.0% |
| TAGTACTAGTGTGGTATAAC+TGG | - | chr1_4:2155224-2155243 | None:intergenic | 35.0% | |
| ATCAAAGTCTAGTACTAGTG+TGG | - | chr1_4:2155233-2155252 | None:intergenic | 35.0% | |
| TAGACTTTGATTGCCAGAAT+AGG | + | chr1_4:2155242-2155261 | Msa0143240:intron | 35.0% | |
| ATTCGAGAAACTTGTGCATT+AGG | - | chr1_4:2155283-2155302 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGTTGTACCATTC+AGG | - | chr1_4:2155555-2155574 | None:intergenic | 35.0% |
| !! | AATCAAAAAGGTATCACCAG+CGG | - | chr1_4:2155854-2155873 | None:intergenic | 35.0% |
| ! | CTAATGTATGTTTTGCTTGC+AGG | + | chr1_4:2155878-2155897 | Msa0143240:intron | 35.0% |
| ! | ACTACATATCAATTGACTCC+GGG | - | chr1_4:2156023-2156042 | None:intergenic | 35.0% |
| ! | ATGTAGTTACACACGAGTTT+TGG | + | chr1_4:2156036-2156055 | Msa0143240:three_prime_UTR | 35.0% |
| !!! | TGGCTTTTCTAAAATGAGCA+AGG | - | chr1_4:2156269-2156288 | None:intergenic | 35.0% |
| !! | TTTTCCCAATGCTAGTTCTT+CGG | + | chr1_4:2156327-2156346 | Msa0143240:three_prime_UTR | 35.0% |
| TATGGCTGCATTTATCTTTC+TGG | + | chr1_4:2156608-2156627 | Msa0143240:three_prime_UTR | 35.0% | |
| TGCTATCGTATAGTAGGAGA+TGG | - | chr1_4:2150264-2150283 | None:intergenic | 40.0% | |
| AACAACAATGATGAAGGGGT+TGG | + | chr1_4:2150331-2150350 | Msa0143240:exon | 40.0% | |
| TCAAAACCACCCAAACCAAA+CGG | + | chr1_4:2150377-2150396 | Msa0143240:CDS | 40.0% | |
| AGTGAATCGGATTTGAGAAG+AGG | - | chr1_4:2150443-2150462 | None:intergenic | 40.0% | |
| TACATCGTTGCGAACATATG+CGG | - | chr1_4:2150528-2150547 | None:intergenic | 40.0% | |
| ATGTTCGCAACGATGTATAC+GGG | + | chr1_4:2150531-2150550 | Msa0143240:CDS | 40.0% | |
| !! | GCTAAGGAGAAGCTTTTTCT+TGG | + | chr1_4:2150578-2150597 | Msa0143240:CDS | 40.0% |
| !! | GATTCTTGCTGTAACGGTTT+TGG | + | chr1_4:2150634-2150653 | Msa0143240:CDS | 40.0% |
| AGGATTATGCTCATTTGGGT+GGG | + | chr1_4:2150723-2150742 | Msa0143240:CDS | 40.0% | |
| TGGATAGCAAAAATGAGAGG+TGG | + | chr1_4:2151052-2151071 | Msa0143240:intron | 40.0% | |
| ACTGGGAACCTTGAATATTG+TGG | + | chr1_4:2151115-2151134 | Msa0143240:intron | 40.0% | |
| AGCTATGACAAGGTAGATAG+AGG | - | chr1_4:2151400-2151419 | None:intergenic | 40.0% | |
| CAAACCTTAGCAACAAAGCT+TGG | - | chr1_4:2151653-2151672 | None:intergenic | 40.0% | |
| TCCATCTATGAAGAGATCAG+TGG | + | chr1_4:2151768-2151787 | Msa0143240:intron | 40.0% | |
| ! | TTTGAGTTCTGTAGTTCTCG+AGG | + | chr1_4:2151902-2151921 | Msa0143240:intron | 40.0% |
| ! | TTTTGTAACAGCAAGTGCCT+TGG | + | chr1_4:2152099-2152118 | Msa0143240:intron | 40.0% |
| TTGGTTGCATCTATGTTCAG+CGG | + | chr1_4:2152118-2152137 | Msa0143240:CDS | 40.0% | |
| !! | ATCTAAGGCATCGGATTTCA+AGG | + | chr1_4:2152143-2152162 | Msa0143240:CDS | 40.0% |
| !! | TCTAAGGCATCGGATTTCAA+GGG | + | chr1_4:2152144-2152163 | Msa0143240:CDS | 40.0% |
| ! | CAGAGGAAATGATGGAAACA+AGG | - | chr1_4:2152264-2152283 | None:intergenic | 40.0% |
| !!! | ATCTTCCTTCCTTTTTTGGG+GGG | + | chr1_4:2152529-2152548 | Msa0143240:intron | 40.0% |
| ATATGCTAGCGTCCTTATAC+AGG | - | chr1_4:2152767-2152786 | None:intergenic | 40.0% | |
| AAGGAAATGGACATGGGAAA+TGG | - | chr1_4:2153003-2153022 | None:intergenic | 40.0% | |
| AAGGAGGAAATCTCCATTTG+TGG | - | chr1_4:2153264-2153283 | None:intergenic | 40.0% | |
| ! | TCTAGTTTCCTAGGGTTCTT+AGG | + | chr1_4:2153728-2153747 | Msa0143240:intron | 40.0% |
| TGTAAGTACCTAAGAACCCT+AGG | - | chr1_4:2153739-2153758 | None:intergenic | 40.0% | |
| AGGGTTCTTAGGTACTTACA+AGG | + | chr1_4:2153739-2153758 | Msa0143240:intron | 40.0% | |
| GTATATGTTTCTTCTGGTGG+AGG | + | chr1_4:2153860-2153879 | Msa0143240:intron | 40.0% | |
| !! | ATCTGCGATTGCTACTTTCT+CGG | + | chr1_4:2153910-2153929 | Msa0143240:intron | 40.0% |
| TCTCGGAGGAAAAATTTGTG+GGG | + | chr1_4:2153927-2153946 | Msa0143240:intron | 40.0% | |
| ! | AAAATTTGTGGGGTGCTTTG+AGG | + | chr1_4:2153937-2153956 | Msa0143240:intron | 40.0% |
| AACCACAGTGCATGAATATG+TGG | - | chr1_4:2153963-2153982 | None:intergenic | 40.0% | |
| GCCGTCACATCAAAACAATA+AGG | - | chr1_4:2154397-2154416 | None:intergenic | 40.0% | |
| CCCTAGGAAACTATGACTTA+TGG | + | chr1_4:2154444-2154463 | Msa0143240:intron | 40.0% | |
| GACAGAGGAGAAATATCACA+TGG | - | chr1_4:2154576-2154595 | None:intergenic | 40.0% | |
| TGCTGTGAGGGATAGTATAT+AGG | - | chr1_4:2154631-2154650 | None:intergenic | 40.0% | |
| TATATACTATCCCTCACAGC+AGG | + | chr1_4:2154630-2154649 | Msa0143240:CDS | 40.0% | |
| CGATAATGTTAGACGGTTGA+TGG | + | chr1_4:2154678-2154697 | Msa0143240:CDS | 40.0% | |
| CTCTATGAAGAGCTATTGAG+TGG | - | chr1_4:2154853-2154872 | None:intergenic | 40.0% | |
| CAAAATCACTCTGATACCAC+TGG | + | chr1_4:2155334-2155353 | Msa0143240:CDS | 40.0% | |
| !! | CGTTTGGAACTGTTCTTTTG+CGG | + | chr1_4:2155433-2155452 | Msa0143240:intron | 40.0% |
| !! | GTTTGGAACTGTTCTTTTGC+GGG | + | chr1_4:2155434-2155453 | Msa0143240:intron | 40.0% |
| ! | GTGCACACACATTACTGTTT+TGG | + | chr1_4:2155510-2155529 | Msa0143240:intron | 40.0% |
| ACATGGAGGATACTACCTTT+AGG | - | chr1_4:2155738-2155757 | None:intergenic | 40.0% | |
| TGTTACATCGCTTTGCTACA+AGG | - | chr1_4:2155792-2155811 | None:intergenic | 40.0% | |
| TATTACCATTGAGAGCAGCA+TGG | - | chr1_4:2155950-2155969 | None:intergenic | 40.0% | |
| ATTGGGAAAACAAACCTGCA+GGG | - | chr1_4:2156317-2156336 | None:intergenic | 40.0% | |
| GTATCCGAAGAACTAGCATT+GGG | - | chr1_4:2156334-2156353 | None:intergenic | 40.0% | |
| ATGTATCCAATAACTGCCTC+TGG | + | chr1_4:2156439-2156458 | Msa0143240:three_prime_UTR | 40.0% | |
| AAATCCCAATCATACTCCAG+AGG | - | chr1_4:2156458-2156477 | None:intergenic | 40.0% | |
| ! | CATTTATCTTTCTGGTGCTG+AGG | + | chr1_4:2156616-2156635 | Msa0143240:three_prime_UTR | 40.0% |
| ! | TTCAGTGTTGTTCTTGGCTT+CGG | - | chr1_4:2156651-2156670 | None:intergenic | 40.0% |
| ATGCGGCGAATTTCTTCTCT+AGG | - | chr1_4:2150511-2150530 | None:intergenic | 45.0% | |
| AACGATGTATACGGGACGAT+GGG | + | chr1_4:2150539-2150558 | Msa0143240:CDS | 45.0% | |
| AAGAGGAGAGTTAGGAGCTA+AGG | + | chr1_4:2150562-2150581 | Msa0143240:CDS | 45.0% | |
| !! | TCTTGCTGTAACGGTTTTGG+TGG | + | chr1_4:2150637-2150656 | Msa0143240:CDS | 45.0% |
| GAGGATTATGCTCATTTGGG+TGG | + | chr1_4:2150722-2150741 | Msa0143240:CDS | 45.0% | |
| ATTATGCTCATTTGGGTGGG+TGG | + | chr1_4:2150726-2150745 | Msa0143240:CDS | 45.0% | |
| TGGCGAAATTAGGGCCAATA+TGG | + | chr1_4:2151135-2151154 | Msa0143240:intron | 45.0% | |
| CAACAGCATCACAGCCATAT+TGG | - | chr1_4:2151152-2151171 | None:intergenic | 45.0% | |
| ATATGGCTGTGATGCTGTTG+TGG | + | chr1_4:2151152-2151171 | Msa0143240:intron | 45.0% | |
| !! | GTTCCCAAGCTTTGTTGCTA+AGG | + | chr1_4:2151646-2151665 | Msa0143240:CDS | 45.0% |
| GCCACTGATCTCTTCATAGA+TGG | - | chr1_4:2151772-2151791 | None:intergenic | 45.0% | |
| ! | TTCCTCTTGTTGGTCTCATC+AGG | + | chr1_4:2151797-2151816 | Msa0143240:CDS | 45.0% |
| GCTGAACATAGATGCAACCA+AGG | - | chr1_4:2152119-2152138 | None:intergenic | 45.0% | |
| TGGTTGCATCTATGTTCAGC+GGG | + | chr1_4:2152119-2152138 | Msa0143240:CDS | 45.0% | |
| CTATGTTCAGCGGGAATCTA+AGG | + | chr1_4:2152128-2152147 | Msa0143240:CDS | 45.0% | |
| !! | TCGGATTTCAAGGGTGTTTC+AGG | + | chr1_4:2152153-2152172 | Msa0143240:CDS | 45.0% |
| TGCGCACTCTGTAACAATCA+TGG | + | chr1_4:2152194-2152213 | Msa0143240:intron | 45.0% | |
| ACATAGGGCAGAGGAAATGA+TGG | - | chr1_4:2152272-2152291 | None:intergenic | 45.0% | |
| TCATTTCCTCTGCCCTATGT+TGG | + | chr1_4:2152272-2152291 | Msa0143240:intron | 45.0% | |
| AAAAGACCAACATAGGGCAG+AGG | - | chr1_4:2152281-2152300 | None:intergenic | 45.0% | |
| AGGAAGAAAGTTCACGGGTT+AGG | - | chr1_4:2152433-2152452 | None:intergenic | 45.0% | |
| AGCTGCAGGAAGAAAGTTCA+CGG | - | chr1_4:2152439-2152458 | None:intergenic | 45.0% | |
| TTGGGCTCGAGTTCTCAAAT+TGG | + | chr1_4:2152610-2152629 | Msa0143240:intron | 45.0% | |
| TTGGCAAGCAGATGAACACA+AGG | - | chr1_4:2152908-2152927 | None:intergenic | 45.0% | |
| TGGACATGGGAAATGGACAT+AGG | - | chr1_4:2152996-2153015 | None:intergenic | 45.0% | |
| ! | GCAGAAGGTACAACCACAAA+TGG | + | chr1_4:2153248-2153267 | Msa0143240:intron | 45.0% |
| TTCCTCCTTCCATTCAAGAC+TGG | + | chr1_4:2153275-2153294 | Msa0143240:CDS | 45.0% | |
| AACCACCAGTCTTGAATGGA+AGG | - | chr1_4:2153283-2153302 | None:intergenic | 45.0% | |
| !!! | GACTGGTGGTTTTTTGGCAA+AGG | + | chr1_4:2153292-2153311 | Msa0143240:CDS | 45.0% |
| TCATCCATTTCCTGCTGTGA+GGG | - | chr1_4:2154643-2154662 | None:intergenic | 45.0% | |
| ATCATCCATTTCCTGCTGTG+AGG | - | chr1_4:2154644-2154663 | None:intergenic | 45.0% | |
| GAGCTATTGAGTGGTGTATC+TGG | - | chr1_4:2154844-2154863 | None:intergenic | 45.0% | |
| !! | AATTTAGCCTTGCTTCTGCG+TGG | + | chr1_4:2155190-2155209 | Msa0143240:intron | 45.0% |
| !! | ATTTAGCCTTGCTTCTGCGT+GGG | + | chr1_4:2155191-2155210 | Msa0143240:intron | 45.0% |
| TGATACCACTGGAAAGTCTG+TGG | + | chr1_4:2155345-2155364 | Msa0143240:CDS | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr1_4:2155576-2155595 | Msa0143240:intron | 45.0% |
| CTTATCCCACTAAGTGGGAT+CGG | + | chr1_4:2155581-2155600 | Msa0143240:intron | 45.0% | |
| TACTGTTATAGTGTGACCGC+TGG | + | chr1_4:2155835-2155854 | Msa0143240:intron | 45.0% | |
| ATCTACCATGCTGCTCTCAA+TGG | + | chr1_4:2155942-2155961 | Msa0143240:CDS | 45.0% | |
| TCTTTCGGACGCAAAACACT+AGG | - | chr1_4:2155981-2156000 | None:intergenic | 45.0% | |
| CATTGGGAAAACAAACCTGC+AGG | - | chr1_4:2156318-2156337 | None:intergenic | 45.0% | |
| CGTATCCGAAGAACTAGCAT+TGG | - | chr1_4:2156335-2156354 | None:intergenic | 45.0% | |
| ! | ATGCTAGTTCTTCGGATACG+TGG | + | chr1_4:2156335-2156354 | Msa0143240:three_prime_UTR | 45.0% |
| CATACTCCAGAGGCAGTTAT+TGG | - | chr1_4:2156448-2156467 | None:intergenic | 45.0% | |
| !! | AACTGCCTCTGGAGTATGAT+TGG | + | chr1_4:2156450-2156469 | Msa0143240:three_prime_UTR | 45.0% |
| !! | ACTGCCTCTGGAGTATGATT+GGG | + | chr1_4:2156451-2156470 | Msa0143240:three_prime_UTR | 45.0% |
| ! | TCAGTGTTGTTCTTGGCTTC+GGG | - | chr1_4:2156650-2156669 | None:intergenic | 45.0% |
| !! | TTTAATAAATAAGATAAAAT+AGG | - | chr1_4:2152873-2152892 | None:intergenic | 5.0% |
| ! | GTGGTGGTTCCGTTTGGTTT+GGG | - | chr1_4:2150389-2150408 | None:intergenic | 50.0% |
| AAGAGGACGATCGTCACGAA+CGG | - | chr1_4:2150426-2150445 | None:intergenic | 50.0% | |
| !! | GGTGGTGGAAGAGAGTGAAT+CGG | - | chr1_4:2150456-2150475 | None:intergenic | 50.0% |
| CAACGATGTATACGGGACGA+TGG | + | chr1_4:2150538-2150557 | Msa0143240:CDS | 50.0% | |
| ACGATGGGAAGAGGAGAGTT+AGG | + | chr1_4:2150554-2150573 | Msa0143240:CDS | 50.0% | |
| AGCAACAAAGCTTGGGAACG+AGG | - | chr1_4:2151645-2151664 | None:intergenic | 50.0% | |
| GTGGCTAAGCTTCCTCTTGT+TGG | + | chr1_4:2151787-2151806 | Msa0143240:CDS | 50.0% | |
| CACCTGATGAGACCAACAAG+AGG | - | chr1_4:2151802-2151821 | None:intergenic | 50.0% | |
| ! | TCAGCGGGAATCTAAGGCAT+CGG | + | chr1_4:2152134-2152153 | Msa0143240:CDS | 50.0% |
| GCTGCAGGAAGAAAGTTCAC+GGG | - | chr1_4:2152438-2152457 | None:intergenic | 50.0% | |
| CTTTCAGTGACAACAGCTGC+AGG | - | chr1_4:2152453-2152472 | None:intergenic | 50.0% | |
| !!! | TTCCTTCCTTTTTTGGGGGG+TGG | + | chr1_4:2152532-2152551 | Msa0143240:intron | 50.0% |
| !!! | TCCTTCCTTTTTTGGGGGGT+GGG | + | chr1_4:2152533-2152552 | Msa0143240:intron | 50.0% |
| GGGGGTCTCTTACCTGTATA+AGG | + | chr1_4:2152752-2152771 | Msa0143240:intron | 50.0% | |
| CACCAGTCTTGAATGGAAGG+AGG | - | chr1_4:2153280-2153299 | None:intergenic | 50.0% | |
| CTCCTTCCATTCAAGACTGG+TGG | + | chr1_4:2153278-2153297 | Msa0143240:CDS | 50.0% | |
| CGGGGCTAAATCTCTGGTAA+GGG | - | chr1_4:2153346-2153365 | None:intergenic | 50.0% | |
| CAGATATGGAATCCCAAGCG+GGG | - | chr1_4:2153364-2153383 | None:intergenic | 50.0% | |
| CCAGATATGGAATCCCAAGC+GGG | - | chr1_4:2153365-2153384 | None:intergenic | 50.0% | |
| CCCAGATATGGAATCCCAAG+CGG | - | chr1_4:2153366-2153385 | None:intergenic | 50.0% | |
| CCGCTTGGGATTCCATATCT+GGG | + | chr1_4:2153363-2153382 | Msa0143240:CDS | 50.0% | |
| CGCTTGGGATTCCATATCTG+GGG | + | chr1_4:2153364-2153383 | Msa0143240:CDS | 50.0% | |
| CTGGTGGAGGATCAATGTCA+TGG | + | chr1_4:2153873-2153892 | Msa0143240:intron | 50.0% | |
| !! | TGCGATTGCTACTTTCTCGG+AGG | + | chr1_4:2153913-2153932 | Msa0143240:intron | 50.0% |
| GGCCACATATTCATGCACTG+TGG | + | chr1_4:2153958-2153977 | Msa0143240:intron | 50.0% | |
| CAACGCTTTGGTTGCAGGAT+TGG | - | chr1_4:2154198-2154217 | None:intergenic | 50.0% | |
| !!! | CTTTTTGGGTGGCAACGCTT+TGG | - | chr1_4:2154210-2154229 | None:intergenic | 50.0% |
| CTATCCCTCACAGCAGGAAA+TGG | + | chr1_4:2154636-2154655 | Msa0143240:CDS | 50.0% | |
| !! | TAGACGGTTGATGGCTACTG+AGG | + | chr1_4:2154687-2154706 | Msa0143240:CDS | 50.0% |
| !! | TTTAGCCTTGCTTCTGCGTG+GGG | + | chr1_4:2155192-2155211 | Msa0143240:intron | 50.0% |
| GTCATCCACAGACTTTCCAG+TGG | - | chr1_4:2155353-2155372 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr1_4:2155578-2155597 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr1_4:2155575-2155594 | Msa0143240:intron | 50.0% |
| CGATCCCACTTAGTGGGATA+AGG | - | chr1_4:2155583-2155602 | None:intergenic | 50.0% | |
| GTTTGCCGATCCCACTTAGT+GGG | - | chr1_4:2155589-2155608 | None:intergenic | 50.0% | |
| TGTTTGCCGATCCCACTTAG+TGG | - | chr1_4:2155590-2155609 | None:intergenic | 50.0% | |
| GGATCGGCAAACATCCTGAA+TGG | + | chr1_4:2155597-2155616 | Msa0143240:intron | 50.0% | |
| ATGAATGGACAGCTCACGTG+AGG | + | chr1_4:2156094-2156113 | Msa0143240:three_prime_UTR | 50.0% | |
| TGAATGGACAGCTCACGTGA+GGG | + | chr1_4:2156095-2156114 | Msa0143240:three_prime_UTR | 50.0% | |
| CTTCTGTTTCATGTCCCTGC+AGG | + | chr1_4:2156300-2156319 | Msa0143240:three_prime_UTR | 50.0% | |
| TTGTTCTTGGCTTCGGGACA+GGG | - | chr1_4:2156644-2156663 | None:intergenic | 50.0% | |
| !! | GTGGTTCCGTTTGGTTTGGG+TGG | - | chr1_4:2150386-2150405 | None:intergenic | 55.0% |
| ! | GGTGGTGGTTCCGTTTGGTT+TGG | - | chr1_4:2150390-2150409 | None:intergenic | 55.0% |
| GTATACGGGACGATGGGAAG+AGG | + | chr1_4:2150545-2150564 | Msa0143240:CDS | 55.0% | |
| ATGCTCATTTGGGTGGGTGG+AGG | + | chr1_4:2150729-2150748 | Msa0143240:CDS | 55.0% | |
| ! | TGCGTTTGTTGACGCAGTCG+CGG | + | chr1_4:2151088-2151107 | Msa0143240:intron | 55.0% |
| TGACGCAGTCGCGGTTATAC+TGG | + | chr1_4:2151097-2151116 | Msa0143240:intron | 55.0% | |
| GACGCAGTCGCGGTTATACT+GGG | + | chr1_4:2151098-2151117 | Msa0143240:intron | 55.0% | |
| TTGTGGCTGCAATTGGGGCT+TGG | + | chr1_4:2151251-2151270 | Msa0143240:intron | 55.0% | |
| CAAACCTCAGCCCGAAGAGA+CGG | + | chr1_4:2151556-2151575 | Msa0143240:CDS | 55.0% | |
| AAACCTCAGCCCGAAGAGAC+GGG | + | chr1_4:2151557-2151576 | Msa0143240:CDS | 55.0% | |
| ACCAGGTCTTCCCGTCTCTT+CGG | - | chr1_4:2151570-2151589 | None:intergenic | 55.0% | |
| ACCCACCCCCCAAAAAAGGA+AGG | - | chr1_4:2152537-2152556 | None:intergenic | 55.0% | |
| !!! | CTTTTTTGGGGGGTGGGTGT+GGG | + | chr1_4:2152539-2152558 | Msa0143240:intron | 55.0% |
| !!! | TTTTTTGGGGGGTGGGTGTG+GGG | + | chr1_4:2152540-2152559 | Msa0143240:intron | 55.0% |
| GCGGGGCTAAATCTCTGGTA+AGG | - | chr1_4:2153347-2153366 | None:intergenic | 55.0% | |
| ACCAGAGATTTAGCCCCGCT+TGG | + | chr1_4:2153348-2153367 | Msa0143240:CDS | 55.0% | |
| CCAGAGATTTAGCCCCGCTT+GGG | + | chr1_4:2153349-2153368 | Msa0143240:CDS | 55.0% | |
| CCCGCTTGGGATTCCATATC+TGG | + | chr1_4:2153362-2153381 | Msa0143240:CDS | 55.0% | |
| TCGGACGCAAAACACTAGGC+AGG | - | chr1_4:2155977-2155996 | None:intergenic | 55.0% | |
| GAATGGACAGCTCACGTGAG+GGG | + | chr1_4:2156096-2156115 | Msa0143240:three_prime_UTR | 55.0% | |
| GTTGTTCTTGGCTTCGGGAC+AGG | - | chr1_4:2156645-2156664 | None:intergenic | 55.0% | |
| ACGATCGTCACGAACGGTGG+CGG | - | chr1_4:2150420-2150439 | None:intergenic | 60.0% | |
| AGGACGATCGTCACGAACGG+TGG | - | chr1_4:2150423-2150442 | None:intergenic | 60.0% | |
| !! | GGTGGTGATGGTTGTGGTGG+TGG | - | chr1_4:2150471-2150490 | None:intergenic | 60.0% |
| CACCACAACCATCACCACCG+CGG | + | chr1_4:2150472-2150491 | Msa0143240:CDS | 60.0% | |
| ! | TAGGTCTTGTAGCTCCGCCG+CGG | - | chr1_4:2150492-2150511 | None:intergenic | 60.0% |
| CCAGGTCTTCCCGTCTCTTC+GGG | - | chr1_4:2151569-2151588 | None:intergenic | 60.0% | |
| CCACACCCACCCCCCAAAAA+AGG | - | chr1_4:2152541-2152560 | None:intergenic | 60.0% | |
| !!! | CCTTTTTTGGGGGGTGGGTG+TGG | + | chr1_4:2152538-2152557 | Msa0143240:intron | 60.0% |
| CCCAAGCGGGGCTAAATCTC+TGG | - | chr1_4:2153352-2153371 | None:intergenic | 60.0% | |
| GGTGGCAACGCTTTGGTTGC+AGG | - | chr1_4:2154203-2154222 | None:intergenic | 60.0% | |
| ACAAGCCCCACGCAGAAGCA+AGG | - | chr1_4:2155200-2155219 | None:intergenic | 60.0% | |
| !! | GCGGTGGTGGTGGTTCCGTT+TGG | - | chr1_4:2150395-2150414 | None:intergenic | 65.0% |
| ! | ATCGTCACGAACGGTGGCGG+TGG | - | chr1_4:2150417-2150436 | None:intergenic | 65.0% |
| !! | CGCGGTGGTGATGGTTGTGG+TGG | - | chr1_4:2150474-2150493 | None:intergenic | 65.0% |
| CACAACCATCACCACCGCGG+CGG | + | chr1_4:2150475-2150494 | Msa0143240:CDS | 65.0% | |
| CTTCCCGTCTCTTCGGGCTG+AGG | - | chr1_4:2151563-2151582 | None:intergenic | 65.0% | |
| CCCGAAGAGACGGGAAGACC+TGG | + | chr1_4:2151566-2151585 | Msa0143240:CDS | 65.0% | |
| TGGGTGTGGGGTGGAGTGGA+GGG | + | chr1_4:2152552-2152571 | Msa0143240:intron | 65.0% | |
| ! | GTCACGAACGGTGGCGGTGG+CGG | - | chr1_4:2150414-2150433 | None:intergenic | 70.0% |
| !! | CGCCGCGGTGGTGATGGTTG+TGG | - | chr1_4:2150477-2150496 | None:intergenic | 70.0% |
| TAGCTCCGCCGCGGTGGTGA+TGG | - | chr1_4:2150483-2150502 | None:intergenic | 70.0% | |
| GTCTTGTAGCTCCGCCGCGG+TGG | - | chr1_4:2150489-2150508 | None:intergenic | 70.0% | |
| TTTGGGGGGTGGGTGTGGGG+TGG | + | chr1_4:2152543-2152562 | Msa0143240:intron | 70.0% | |
| GTGGGTGTGGGGTGGAGTGG+AGG | + | chr1_4:2152551-2152570 | Msa0143240:intron | 70.0% | |
| GGGTGTGGGGTGGAGTGGAG+GGG | + | chr1_4:2152553-2152572 | Msa0143240:intron | 70.0% | |
| TGGGGTGGAGTGGAGGGGTG+TGG | + | chr1_4:2152558-2152577 | Msa0143240:intron | 70.0% | |
| ! | AACGGTGGCGGTGGCGGTGG+TGG | - | chr1_4:2150408-2150427 | None:intergenic | 75.0% |
| ! | ACGAACGGTGGCGGTGGCGG+TGG | - | chr1_4:2150411-2150430 | None:intergenic | 75.0% |
| GGGGTGGGTGTGGGGTGGAG+TGG | + | chr1_4:2152548-2152567 | Msa0143240:intron | 75.0% | |
| !! | GGTGGCGGTGGCGGTGGTGG+TGG | - | chr1_4:2150405-2150424 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 2150157 | 2156696 | 2150157 | ID=Msa0143240;Name=Msa0143240 |
| chr1_4 | mRNA | 2150157 | 2156696 | 2150157 | ID=Msa0143240-mRNA-1;Parent=Msa0143240;Name=Msa0143240-mRNA-1;_AED=0.08;_eAED=0.08;_QI=181|0.75|0.88|0.88|1|1|9|689|419 |
| chr1_4 | exon | 2150157 | 2150850 | 2150157 | ID=Msa0143240-mRNA-1:exon:818;Parent=Msa0143240-mRNA-1 |
| chr1_4 | exon | 2151551 | 2151667 | 2151551 | ID=Msa0143240-mRNA-1:exon:819;Parent=Msa0143240-mRNA-1 |
| chr1_4 | exon | 2151781 | 2151818 | 2151781 | ID=Msa0143240-mRNA-1:exon:820;Parent=Msa0143240-mRNA-1 |
| chr1_4 | exon | 2152110 | 2152174 | 2152110 | ID=Msa0143240-mRNA-1:exon:821;Parent=Msa0143240-mRNA-1 |
| chr1_4 | exon | 2152457 | 2152525 | 2152457 | ID=Msa0143240-mRNA-1:exon:822;Parent=Msa0143240-mRNA-1 |
| chr1_4 | exon | 2153252 | 2153385 | 2153252 | ID=Msa0143240-mRNA-1:exon:823;Parent=Msa0143240-mRNA-1 |
| chr1_4 | exon | 2154568 | 2154708 | 2154568 | ID=Msa0143240-mRNA-1:exon:824;Parent=Msa0143240-mRNA-1 |
| chr1_4 | exon | 2155313 | 2155387 | 2155313 | ID=Msa0143240-mRNA-1:exon:825;Parent=Msa0143240-mRNA-1 |
| chr1_4 | exon | 2155900 | 2156696 | 2155900 | ID=Msa0143240-mRNA-1:exon:826;Parent=Msa0143240-mRNA-1 |
| chr1_4 | five_prime_UTR | 2150157 | 2150337 | 2150157 | ID=Msa0143240-mRNA-1:five_prime_utr;Parent=Msa0143240-mRNA-1 |
| chr1_4 | CDS | 2150338 | 2150850 | 2150338 | ID=Msa0143240-mRNA-1:cds;Parent=Msa0143240-mRNA-1 |
| chr1_4 | CDS | 2151551 | 2151667 | 2151551 | ID=Msa0143240-mRNA-1:cds;Parent=Msa0143240-mRNA-1 |
| chr1_4 | CDS | 2151781 | 2151818 | 2151781 | ID=Msa0143240-mRNA-1:cds;Parent=Msa0143240-mRNA-1 |
| chr1_4 | CDS | 2152110 | 2152174 | 2152110 | ID=Msa0143240-mRNA-1:cds;Parent=Msa0143240-mRNA-1 |
| chr1_4 | CDS | 2152457 | 2152525 | 2152457 | ID=Msa0143240-mRNA-1:cds;Parent=Msa0143240-mRNA-1 |
| chr1_4 | CDS | 2153252 | 2153385 | 2153252 | ID=Msa0143240-mRNA-1:cds;Parent=Msa0143240-mRNA-1 |
| chr1_4 | CDS | 2154568 | 2154708 | 2154568 | ID=Msa0143240-mRNA-1:cds;Parent=Msa0143240-mRNA-1 |
| chr1_4 | CDS | 2155313 | 2155387 | 2155313 | ID=Msa0143240-mRNA-1:cds;Parent=Msa0143240-mRNA-1 |
| chr1_4 | CDS | 2155900 | 2156007 | 2155900 | ID=Msa0143240-mRNA-1:cds;Parent=Msa0143240-mRNA-1 |
| chr1_4 | three_prime_UTR | 2156008 | 2156696 | 2156008 | ID=Msa0143240-mRNA-1:three_prime_utr;Parent=Msa0143240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
