AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0703010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0703010 MtrunA17_Chr8g0381011 79.255 188 14 2 1 175 1 176 5.41e-99 283
Msa0703010 MtrunA17_Chr2g0303181 65.000 180 51 3 1 175 1 173 1.06e-76 226
Msa0703010 MtrunA17_Chr4g0054701 73.636 110 29 0 2 111 31 140 1.55e-55 172
Msa0703010 MtrunA17_Chr4g0047341 52.778 72 34 0 41 112 40 111 9.01e-22 86.3
Msa0703010 MtrunA17_Chr4g0047341 45.588 68 36 1 3 70 41 107 7.69e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0703010 AT4G20380.2 65.054 186 52 4 1 175 6 189 2.12e-64 196
Msa0703010 AT4G20380.7 65.054 186 52 4 1 175 6 189 2.12e-64 196
Msa0703010 AT4G20380.6 65.054 186 52 4 1 175 1 184 2.29e-64 196
Msa0703010 AT4G20380.3 65.054 186 52 4 1 175 1 184 2.29e-64 196
Msa0703010 AT4G20380.4 65.054 186 52 4 1 175 1 184 2.29e-64 196
Msa0703010 AT4G20380.1 65.054 186 52 4 1 175 1 184 2.29e-64 196
Msa0703010 AT4G20380.5 65.054 186 52 4 1 175 1 184 2.29e-64 196
Msa0703010 AT4G20380.8 57.075 212 52 4 1 175 1 210 4.49e-60 186
Msa0703010 AT1G32540.1 72.727 110 30 0 2 111 65 174 3.10e-55 173
Msa0703010 AT1G32540.3 72.727 110 30 0 2 111 32 141 4.05e-54 169
Msa0703010 AT1G32540.3 41.667 96 52 2 42 136 33 125 9.73e-14 65.5
Msa0703010 AT1G32540.2 72.727 110 30 0 2 111 32 141 4.05e-54 169
Msa0703010 AT1G32540.2 41.667 96 52 2 42 136 33 125 9.73e-14 65.5
Msa0703010 AT1G32540.5 74.074 108 28 0 2 109 32 139 1.59e-53 167
Msa0703010 AT1G32540.5 41.667 96 52 2 42 136 33 125 1.13e-13 65.5
Msa0703010 AT4G20380.9 69.106 123 27 3 1 112 1 123 8.50e-50 157
Msa0703010 AT4G20380.9 43.956 91 48 1 43 130 4 94 1.89e-16 72.0
Msa0703010 AT1G32540.7 76.389 72 17 0 2 73 65 136 1.88e-36 124
Msa0703010 AT1G32540.7 52.941 68 31 1 42 108 66 133 5.94e-14 65.9
Msa0703010 AT1G32540.4 76.389 72 17 0 2 73 32 103 1.10e-35 120
Msa0703010 AT1G32540.4 52.941 68 31 1 42 108 33 100 1.28e-13 64.3
Msa0703010 AT1G32540.6 76.389 72 17 0 2 73 32 103 1.10e-35 120
Msa0703010 AT1G32540.6 52.941 68 31 1 42 108 33 100 1.28e-13 64.3
Msa0703010 AT4G21610.1 52.703 74 35 0 40 113 57 130 7.76e-22 86.7
Msa0703010 AT4G21610.2 53.425 73 34 0 40 112 57 129 6.29e-21 84.3

Find 89 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGATTTGATAATAATTT+AGG 0.148987 4_4:+74863232 Msa0703010:five_prime_UTR
CACTGTTTGGCTCTGAGATT+GGG 0.218971 4_4:-74867938 None:intergenic
ACACTCTTTCGAAATTTCTT+TGG 0.276383 4_4:-74863290 None:intergenic
ACCAGGAGGCTTTGAATGTT+TGG 0.280256 4_4:+74868613 Msa0703010:three_prime_UTR
TTAAGAAGAAAACGTTGATA+TGG 0.280422 4_4:-74863548 None:intergenic
CCACTGTTTGGCTCTGAGAT+TGG 0.301892 4_4:-74867939 None:intergenic
TCTAACCCTTACATCGAAAA+AGG 0.308859 4_4:-74868285 None:intergenic
TGTTGATTCAAGTGGGAAAT+TGG 0.322882 4_4:+74867981 Msa0703010:CDS
ATTCGTTTGAATGAAACTAT+TGG 0.341778 4_4:-74868258 None:intergenic
ACAACACTCATGTATCCTTA+TGG 0.360459 4_4:+74866537 Msa0703010:CDS
TGATTGAATTGAATGAGAAT+TGG 0.366028 4_4:-74863481 None:intergenic
TATCAGTATGTATATGTATA+TGG 0.369936 4_4:+74868312 Msa0703010:three_prime_UTR
TTTACGAGTGATTTGTGAAA+AGG 0.370779 4_4:+74868575 Msa0703010:three_prime_UTR
TAAGAAGAAAACGTTGATAT+GGG 0.372153 4_4:-74863547 None:intergenic
AAACGTTGATATGGGGATAA+AGG 0.376173 4_4:-74863539 None:intergenic
ATGCGAGGAAAATAAAATAT+TGG 0.385227 4_4:+74863342 Msa0703010:five_prime_UTR
GATTGAATTGAATGAGAATT+GGG 0.398848 4_4:-74863480 None:intergenic
AAGTAGCCCATGTCCCTTGC+GGG 0.401008 4_4:+74866505 Msa0703010:CDS
GGCAGTTCCCGCAAGGGACA+TGG 0.407023 4_4:-74866512 None:intergenic
CATTCAAAGCCTCCTGGTCC+TGG 0.415471 4_4:-74868608 None:intergenic
AATAATGCAGCCATGATAGA+AGG 0.426858 4_4:+74868158 Msa0703010:exon
TGGGAATAATTTGATTGTGT+TGG 0.428702 4_4:-74863461 None:intergenic
CAAACATTGGTTGCCCCTCT+AGG 0.429678 4_4:-74864164 None:intergenic
TATACACATGCAATATCTTC+TGG 0.438927 4_4:-74868215 None:intergenic
ATGTCCCTTGCGGGAACTGC+CGG 0.445439 4_4:+74866514 Msa0703010:CDS
TGTGAAAAGGGCTGTGTGAT+TGG 0.446871 4_4:+74868346 Msa0703010:three_prime_UTR
GAGAGGACGAGTTGTGAAAA+GGG 0.449859 4_4:+74868334 Msa0703010:three_prime_UTR
TTCGTTACTGAATGTTGTAC+AGG 0.453491 4_4:+74868530 Msa0703010:three_prime_UTR
CCACTTGAATCAACAGACAT+TGG 0.458263 4_4:-74867973 None:intergenic
CAGGTGAGCAATGTTGTTGT+TGG 0.459951 4_4:+74868118 Msa0703010:intron
GTGTGATATAATAACAGATC+TGG 0.464583 4_4:+74868496 Msa0703010:three_prime_UTR
TTACGAGTGATTTGTGAAAA+GGG 0.470194 4_4:+74868576 Msa0703010:three_prime_UTR
TGATCTGTTAGGACCGTGTA+TGG 0.475377 4_4:+74868455 Msa0703010:three_prime_UTR
AAGTCGCAAGGAAGGAAGAA+AGG 0.479378 4_4:+74863386 Msa0703010:five_prime_UTR
GGAGAGGACGAGTTGTGAAA+AGG 0.487910 4_4:+74868333 Msa0703010:three_prime_UTR
TGGTGATTAATAGCATAGAA+AGG 0.493805 4_4:+74867840 Msa0703010:intron
CGTTTGAATGAAACTATTGG+AGG 0.497853 4_4:-74868255 None:intergenic
CTAAATTATTATCAAATCAA+AGG 0.500333 4_4:-74863231 None:intergenic
ATAAAATCACAGGCTTATCA+AGG 0.508700 4_4:-74868429 None:intergenic
ATATACTGTACCTTCTATCA+TGG 0.516123 4_4:-74868168 None:intergenic
AAACATTGGTTGCCCCTCTA+GGG 0.521552 4_4:-74864163 None:intergenic
AGAAGAAGAAGTCGCAAGGA+AGG 0.523100 4_4:+74863378 Msa0703010:five_prime_UTR
GCATGTTGCTTTACCCTAGA+GGG 0.526229 4_4:+74864150 Msa0703010:CDS
TGAAAAGGGTGATAATATCC+AGG 0.532173 4_4:+74868590 Msa0703010:three_prime_UTR
TTGACTGAAGGAGCTCCATA+AGG 0.536562 4_4:-74866552 None:intergenic
GAACACGGTCCTGGTGCCGC+AGG 0.537469 4_4:+74863644 Msa0703010:five_prime_UTR
AAGGATACATGAGTGTTGTC+CGG 0.538194 4_4:-74866533 None:intergenic
TCCAAACATTCAAAGCCTCC+TGG 0.539567 4_4:-74868614 None:intergenic
AAGGAAAAGAAATATGAAAG+AGG 0.541246 4_4:-74863520 None:intergenic
ACTGTTTGGCTCTGAGATTG+GGG 0.544116 4_4:-74867937 None:intergenic
AGTCGCAAGGAAGGAAGAAA+GGG 0.544782 4_4:+74863387 Msa0703010:five_prime_UTR
GTTATTTAGTAAGTTGTAGA+CGG 0.549219 4_4:+74868386 Msa0703010:three_prime_UTR
AGGAAAAGAAATATGAAAGA+GGG 0.549490 4_4:-74863519 None:intergenic
GTTGTCCGGCAGTTCCCGCA+AGG 0.550249 4_4:-74866519 None:intergenic
CTTGTCGCAGAACACGGTCC+TGG 0.553516 4_4:+74863635 Msa0703010:five_prime_UTR
TAGCATAGAAAGGATGATGT+TGG 0.554099 4_4:+74867850 Msa0703010:intron
CTAACAATACCTGCGGCACC+AGG 0.557233 4_4:-74863653 None:intergenic
AACTTGTGTGTAATGGTTGT+AGG 0.557278 4_4:+74864126 Msa0703010:CDS
GCAGTTCCCGCAAGGGACAT+GGG 0.560859 4_4:-74866511 None:intergenic
CAGAGTCAACTTGTGTGTAA+TGG 0.563559 4_4:+74864119 Msa0703010:CDS
CAGATCATCGATAAAATCAC+AGG 0.563654 4_4:-74868439 None:intergenic
AAGATGAAGATGAAGTAGAG+AGG 0.567265 4_4:+74863316 Msa0703010:five_prime_UTR
GATATGTCTCAACTATATTG+TGG 0.572327 4_4:+74864384 Msa0703010:CDS
CCAATGTCTGTTGATTCAAG+TGG 0.574429 4_4:+74867973 Msa0703010:CDS
AAGAAGAAAACGTTGATATG+GGG 0.575509 4_4:-74863546 None:intergenic
GAGATTGGGGCATTGACTGT+AGG 0.580252 4_4:-74867924 None:intergenic
GAATCGCTTGTCGCAGAACA+CGG 0.581082 4_4:+74863629 Msa0703010:five_prime_UTR
AACTATATTGTGGAGGCTGT+AGG 0.590469 4_4:+74864394 Msa0703010:CDS
TTGTCCGGCAGTTCCCGCAA+GGG 0.594632 4_4:-74866518 None:intergenic
ATTACCTCTGTTCCTCCACC+TGG 0.595203 4_4:+74864206 Msa0703010:CDS
GAAGTAGAGAGGAAGATGCG+AGG 0.596498 4_4:+74863327 Msa0703010:five_prime_UTR
CATACTGTAAACCTTGCTCC+AGG 0.599148 4_4:+74864468 Msa0703010:CDS
AATATACATTACCTGGAGCA+AGG 0.599284 4_4:-74864479 None:intergenic
CAATGTCTGTTGATTCAAGT+GGG 0.600952 4_4:+74867974 Msa0703010:CDS
GGGTGATAATATCCAGGACC+AGG 0.601001 4_4:+74868596 Msa0703010:three_prime_UTR
CGTTGGAGCTTACCAGGTGG+AGG 0.603157 4_4:-74864218 None:intergenic
GCACAATGCACAACAAACAT+TGG 0.623040 4_4:-74864177 None:intergenic
ATCTCAGAGCCAAACAGTGG+TGG 0.625723 4_4:+74867942 Msa0703010:CDS
AGCATGTTGCTTTACCCTAG+AGG 0.627744 4_4:+74864149 Msa0703010:CDS
CAAACAGCACATTTGACTGA+AGG 0.639168 4_4:-74866564 None:intergenic
ATGTCTCAACTATATTGTGG+AGG 0.644670 4_4:+74864387 Msa0703010:CDS
CAAGTAGCCCATGTCCCTTG+CGG 0.646539 4_4:+74866504 Msa0703010:CDS
CATGTTGCTTTACCCTAGAG+GGG 0.647362 4_4:+74864151 Msa0703010:CDS
CTTACCAGGTGGAGGAACAG+AGG 0.665101 4_4:-74864210 None:intergenic
TGATAATATCCAGGACCAGG+AGG 0.672230 4_4:+74868599 Msa0703010:three_prime_UTR
GTATGTATATGTATATGGAG+AGG 0.676077 4_4:+74868317 Msa0703010:three_prime_UTR
CCAATCTCAGAGCCAAACAG+TGG 0.689166 4_4:+74867939 Msa0703010:CDS
TTGTATCGAATATCCATACA+CGG 0.711052 4_4:-74868468 None:intergenic
ACATTGTTAATGTACACACG+CGG 0.795848 4_4:+74864417 Msa0703010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTTAAAATGTTATAC+GGG + chr4_4:74865264-74865283 Msa0703010:intron 10.0%
!! TTAAAGAAAAAATAATACTT+TGG + chr4_4:74867516-74867535 Msa0703010:intron 10.0%
!! CTAAATTATTATCAAATCAA+AGG - chr4_4:74863234-74863253 None:intergenic 15.0%
!!! CTTTGATTTGATAATAATTT+AGG + chr4_4:74863232-74863251 Msa0703010:five_prime_UTR 15.0%
!! AAAACAAAAAACAAAAACAA+AGG - chr4_4:74863681-74863700 None:intergenic 15.0%
!!! TTTGTTTTATTATACGTTTT+GGG + chr4_4:74863731-74863750 Msa0703010:intron 15.0%
!!! TTCAACAAGATTTTTTTTTT+AGG - chr4_4:74865940-74865959 None:intergenic 15.0%
!!! TTTTTTTCTAGTTTTGTTTT+TGG + chr4_4:74867820-74867839 Msa0703010:intron 15.0%
!! TAGGATATGATAAAAAAATG+TGG + chr4_4:74863251-74863270 Msa0703010:five_prime_UTR 20.0%
!!! GTTTGTTTTATTATACGTTT+TGG + chr4_4:74863730-74863749 Msa0703010:intron 20.0%
!!! CTAAAACAGTTATGTTATTT+AGG + chr4_4:74865029-74865048 Msa0703010:intron 20.0%
!! GAAATTGAAGATTATTACAA+TGG - chr4_4:74865089-74865108 None:intergenic 20.0%
!!! TAGCTAATGTTTTGTAAATT+TGG + chr4_4:74865688-74865707 Msa0703010:intron 20.0%
!!! TTTTTTTTAGGAAGAATTGA+TGG - chr4_4:74865928-74865947 None:intergenic 20.0%
!! AACATGTAGTTGTTTATAAA+TGG - chr4_4:74866097-74866116 None:intergenic 20.0%
!!! ATATTTGCATAATCATTTTC+TGG + chr4_4:74866160-74866179 Msa0703010:intron 20.0%
!!! TATTTGCATAATCATTTTCT+GGG + chr4_4:74866161-74866180 Msa0703010:intron 20.0%
!! AGTGTTTCATTATTTAATCT+TGG + chr4_4:74866252-74866271 Msa0703010:intron 20.0%
!! TGTAAAATGGAATTCTTTAT+TGG - chr4_4:74866407-74866426 None:intergenic 20.0%
!!! TTTAATCTGCGTTTTTAAAT+AGG + chr4_4:74867027-74867046 Msa0703010:intron 20.0%
!!! TCACACATAGATTATTTTTT+TGG + chr4_4:74867057-74867076 Msa0703010:intron 20.0%
!! AATAGTTGATTAGGATAATT+TGG - chr4_4:74867483-74867502 None:intergenic 20.0%
!! AAATTATCCTAATCAACTAT+TGG + chr4_4:74867482-74867501 Msa0703010:intron 20.0%
!! TGTAACATAGTATTAATTGA+AGG + chr4_4:74867545-74867564 Msa0703010:intron 20.0%
!! GTAACATAGTATTAATTGAA+GGG + chr4_4:74867546-74867565 Msa0703010:intron 20.0%
!!! CATTTTGAAACAGATTTTTT+TGG + chr4_4:74867620-74867639 Msa0703010:intron 20.0%
!!! AGACTTGTTTAAAATGAATT+TGG + chr4_4:74868088-74868107 Msa0703010:intron 20.0%
!! TATCAGTATGTATATGTATA+TGG + chr4_4:74868312-74868331 Msa0703010:three_prime_UTR 20.0%
! ATGCGAGGAAAATAAAATAT+TGG + chr4_4:74863342-74863361 Msa0703010:five_prime_UTR 25.0%
! GATTGAATTGAATGAGAATT+GGG - chr4_4:74863483-74863502 None:intergenic 25.0%
! TGATTGAATTGAATGAGAAT+TGG - chr4_4:74863484-74863503 None:intergenic 25.0%
! AGGAAAAGAAATATGAAAGA+GGG - chr4_4:74863522-74863541 None:intergenic 25.0%
! AAGGAAAAGAAATATGAAAG+AGG - chr4_4:74863523-74863542 None:intergenic 25.0%
! TAAGAAGAAAACGTTGATAT+GGG - chr4_4:74863550-74863569 None:intergenic 25.0%
! TTAAGAAGAAAACGTTGATA+TGG - chr4_4:74863551-74863570 None:intergenic 25.0%
!!! TTTGTTCCATTTTTTTCTTC+TGG + chr4_4:74863707-74863726 Msa0703010:intron 25.0%
!!! TTGTTCCATTTTTTTCTTCT+GGG + chr4_4:74863708-74863727 Msa0703010:intron 25.0%
!!! TTTTGGGAAATTCAACATTT+TGG + chr4_4:74863747-74863766 Msa0703010:intron 25.0%
!! TTTGGGAAATTCAACATTTT+GGG + chr4_4:74863748-74863767 Msa0703010:intron 25.0%
! ATTAGGCAAAACTTCAAATT+CGG - chr4_4:74863853-74863872 None:intergenic 25.0%
! CAAATTCCAACTACTATATT+AGG - chr4_4:74863870-74863889 None:intergenic 25.0%
! CTAATATAGTAGTTGGAATT+TGG + chr4_4:74863868-74863887 Msa0703010:intron 25.0%
! AAAAGCAAATATACATTACC+TGG - chr4_4:74864489-74864508 None:intergenic 25.0%
!!! TGTATGTTTTGAACTGTATT+TGG + chr4_4:74864740-74864759 Msa0703010:intron 25.0%
! ATTATTACAATGGAACACTA+GGG - chr4_4:74865079-74865098 None:intergenic 25.0%
! TTGCTAAATAAGATTGCTAA+TGG + chr4_4:74865118-74865137 Msa0703010:intron 25.0%
!! AGTCACTGAATAATTTCTTT+TGG + chr4_4:74865154-74865173 Msa0703010:intron 25.0%
! TTGAACAAAGCAAGAAAATA+AGG - chr4_4:74865230-74865249 None:intergenic 25.0%
! GAGATTTATTTACGCTAAAA+AGG + chr4_4:74865321-74865340 Msa0703010:intron 25.0%
! TTTATTTACGCTAAAAAGGA+TGG + chr4_4:74865325-74865344 Msa0703010:intron 25.0%
! TTATTTACGCTAAAAAGGAT+GGG + chr4_4:74865326-74865345 Msa0703010:intron 25.0%
! TGAGAACATTAGAGTTATAA+TGG + chr4_4:74865374-74865393 Msa0703010:intron 25.0%
! AATTTGGAGACAAAATTTCT+TGG + chr4_4:74865704-74865723 Msa0703010:intron 25.0%
! CAATAAAAATAATGACAACC+TGG + chr4_4:74865737-74865756 Msa0703010:intron 25.0%
! TAAACAACTACATGTTAATC+TGG + chr4_4:74866101-74866120 Msa0703010:intron 25.0%
! AAACAACTACATGTTAATCT+GGG + chr4_4:74866102-74866121 Msa0703010:intron 25.0%
! GAGATTTGAAGAGTAATAAA+AGG - chr4_4:74866305-74866324 None:intergenic 25.0%
! GAATAAATCACACTGTAAAA+TGG - chr4_4:74866420-74866439 None:intergenic 25.0%
!! TCTACAGAATTTTGTTAATC+TGG + chr4_4:74866620-74866639 Msa0703010:intron 25.0%
!! CTACAGAATTTTGTTAATCT+GGG + chr4_4:74866621-74866640 Msa0703010:intron 25.0%
! TAGTCTTTAATTCTTGTATG+TGG - chr4_4:74866717-74866736 None:intergenic 25.0%
! CTTGAAATCTGATTAGAAAA+AGG + chr4_4:74866774-74866793 Msa0703010:intron 25.0%
!!! CCAATCTTATTCTTTTAAGT+TGG - chr4_4:74867206-74867225 None:intergenic 25.0%
! CCAACTTAAAAGAATAAGAT+TGG + chr4_4:74867203-74867222 Msa0703010:intron 25.0%
! AACATTGAACACATCTTAAA+GGG + chr4_4:74867283-74867302 Msa0703010:intron 25.0%
! AAACAAACCAATAGTTGATT+AGG - chr4_4:74867492-74867511 None:intergenic 25.0%
!!! TTCAAAATGAATGTCACTTT+CGG - chr4_4:74867609-74867628 None:intergenic 25.0%
! ATTCGTTTGAATGAAACTAT+TGG - chr4_4:74868261-74868280 None:intergenic 25.0%
! GTTATTTAGTAAGTTGTAGA+CGG + chr4_4:74868386-74868405 Msa0703010:three_prime_UTR 25.0%
ACACTCTTTCGAAATTTCTT+TGG - chr4_4:74863293-74863312 None:intergenic 30.0%
TGGGAATAATTTGATTGTGT+TGG - chr4_4:74863464-74863483 None:intergenic 30.0%
AAGAAGAAAACGTTGATATG+GGG - chr4_4:74863549-74863568 None:intergenic 30.0%
ACAAACCCAGAAGAAAAAAA+TGG - chr4_4:74863716-74863735 None:intergenic 30.0%
TTAGGCAAAACTTCAAATTC+GGG - chr4_4:74863852-74863871 None:intergenic 30.0%
! GTTTTGCCTAATATAGTAGT+TGG + chr4_4:74863861-74863880 Msa0703010:intron 30.0%
! ATTGAAACAAAAAGTGTGTC+AGG - chr4_4:74863950-74863969 None:intergenic 30.0%
!! TTTGGTTGGTTAAGGTTTTA+TGG + chr4_4:74864065-74864084 Msa0703010:intron 30.0%
GATGTACGAACATTACATAT+AGG - chr4_4:74864275-74864294 None:intergenic 30.0%
!! TGAGACTCTAAGTTGATATT+AGG + chr4_4:74864329-74864348 Msa0703010:intron 30.0%
GATATGTCTCAACTATATTG+TGG + chr4_4:74864384-74864403 Msa0703010:CDS 30.0%
GTGGTTTAGTATTAGTTAAG+CGG + chr4_4:74864536-74864555 Msa0703010:intron 30.0%
TGGTTTAGTATTAGTTAAGC+GGG + chr4_4:74864537-74864556 Msa0703010:intron 30.0%
TTGAACTGTATTTGGATAAG+AGG + chr4_4:74864748-74864767 Msa0703010:intron 30.0%
! ATGATGTTCTTTTGTATGCA+TGG + chr4_4:74864848-74864867 Msa0703010:intron 30.0%
!! TTACTTTGATTCCACTTTTG+AGG + chr4_4:74864903-74864922 Msa0703010:intron 30.0%
TGTGAGTGGTTTATTTATGT+TGG + chr4_4:74865000-74865019 Msa0703010:intron 30.0%
TGGTTTATTTATGTTGGTCA+CGG + chr4_4:74865006-74865025 Msa0703010:intron 30.0%
TTAGGTGTTCTTACTTGTAA+TGG + chr4_4:74865047-74865066 Msa0703010:intron 30.0%
GATTATTACAATGGAACACT+AGG - chr4_4:74865080-74865099 None:intergenic 30.0%
AATCAAAGAAGACTGAATCA+GGG - chr4_4:74865191-74865210 None:intergenic 30.0%
TTAGAGTTATAATGGCTAAG+TGG + chr4_4:74865382-74865401 Msa0703010:intron 30.0%
TTATAATGGCTAAGTGGTTA+TGG + chr4_4:74865388-74865407 Msa0703010:intron 30.0%
! CATTTTAAGCTTTGCAGAAA+AGG - chr4_4:74865428-74865447 None:intergenic 30.0%
! GCTAAAATGCTTTTCCAAAA+AGG + chr4_4:74865529-74865548 Msa0703010:intron 30.0%
! AAAATGCTTTTCCAAAAAGG+TGG + chr4_4:74865532-74865551 Msa0703010:intron 30.0%
!! TTTTTAGGAAGAATTGATGG+AGG - chr4_4:74865925-74865944 None:intergenic 30.0%
AAGTGAAGAATCAACACATT+CGG - chr4_4:74865967-74865986 None:intergenic 30.0%
! TACATGTTAATCTGGGATTA+AGG + chr4_4:74866109-74866128 Msa0703010:intron 30.0%
AAATAATGAAACACTGACCT+TGG - chr4_4:74866247-74866266 None:intergenic 30.0%
TCTTCAAATCTCTATTGTAG+AGG + chr4_4:74866313-74866332 Msa0703010:intron 30.0%
TAAAGACTAGTATGAGAGAA+AGG + chr4_4:74866728-74866747 Msa0703010:intron 30.0%
!! GATTCAGTTAATTTGTAGGA+AGG - chr4_4:74866904-74866923 None:intergenic 30.0%
TGGTTATAGTAGTAAAGGAA+GGG - chr4_4:74866927-74866946 None:intergenic 30.0%
TTAGGTGGTTATAGTAGTAA+AGG - chr4_4:74866932-74866951 None:intergenic 30.0%
AAGTAGCTACAGAATTAGTT+AGG - chr4_4:74866950-74866969 None:intergenic 30.0%
! TCTGCGTTTTTAAATAGGAA+AGG + chr4_4:74867032-74867051 Msa0703010:intron 30.0%
CAAGCTTATCAAGAATAAGT+AGG - chr4_4:74867142-74867161 None:intergenic 30.0%
AAGAATAAGATTGGAGTCTA+AGG + chr4_4:74867212-74867231 Msa0703010:intron 30.0%
CAACATTGAACACATCTTAA+AGG + chr4_4:74867282-74867301 Msa0703010:intron 30.0%
CAGTATGAAAAAATCAACTC+AGG - chr4_4:74867690-74867709 None:intergenic 30.0%
TGGTGATTAATAGCATAGAA+AGG + chr4_4:74867840-74867859 Msa0703010:intron 30.0%
ATATACTGTACCTTCTATCA+TGG - chr4_4:74868171-74868190 None:intergenic 30.0%
TATACACATGCAATATCTTC+TGG - chr4_4:74868218-74868237 None:intergenic 30.0%
GTATGTATATGTATATGGAG+AGG + chr4_4:74868317-74868336 Msa0703010:three_prime_UTR 30.0%
ATAAAATCACAGGCTTATCA+AGG - chr4_4:74868432-74868451 None:intergenic 30.0%
! GATTTTATCGATGATCTGTT+AGG + chr4_4:74868444-74868463 Msa0703010:three_prime_UTR 30.0%
TTGTATCGAATATCCATACA+CGG - chr4_4:74868471-74868490 None:intergenic 30.0%
GTGTGATATAATAACAGATC+TGG + chr4_4:74868496-74868515 Msa0703010:three_prime_UTR 30.0%
! TTTACGAGTGATTTGTGAAA+AGG + chr4_4:74868575-74868594 Msa0703010:three_prime_UTR 30.0%
! TTACGAGTGATTTGTGAAAA+GGG + chr4_4:74868576-74868595 Msa0703010:three_prime_UTR 30.0%
AAGATGAAGATGAAGTAGAG+AGG + chr4_4:74863316-74863335 Msa0703010:five_prime_UTR 35.0%
AAACGTTGATATGGGGATAA+AGG - chr4_4:74863542-74863561 None:intergenic 35.0%
AAAGGATCTAACAATACCTG+CGG - chr4_4:74863663-74863682 None:intergenic 35.0%
!! AATCTTGGTTTGGTTGGTTA+AGG + chr4_4:74864057-74864076 Msa0703010:intron 35.0%
!! TGGTTAAGGTTTTATGGTGA+TGG + chr4_4:74864071-74864090 Msa0703010:intron 35.0%
AACTTGTGTGTAATGGTTGT+AGG + chr4_4:74864126-74864145 Msa0703010:CDS 35.0%
TTTAATAACGAGAACAGCGT+TGG - chr4_4:74864238-74864257 None:intergenic 35.0%
ATGTCTCAACTATATTGTGG+AGG + chr4_4:74864387-74864406 Msa0703010:CDS 35.0%
ACATTGTTAATGTACACACG+CGG + chr4_4:74864417-74864436 Msa0703010:CDS 35.0%
AATATACATTACCTGGAGCA+AGG - chr4_4:74864482-74864501 None:intergenic 35.0%
TTTAGTATTAGTTAAGCGGG+TGG + chr4_4:74864540-74864559 Msa0703010:intron 35.0%
CATTGCTTGATCATGGAATA+TGG + chr4_4:74864626-74864645 Msa0703010:intron 35.0%
TGTATTTGGATAAGAGGCAA+TGG + chr4_4:74864754-74864773 Msa0703010:intron 35.0%
! TAGTGAAAGGTTTGGTTGTT+TGG + chr4_4:74864785-74864804 Msa0703010:intron 35.0%
CATCATAATCTACAAACTGC+AGG - chr4_4:74864834-74864853 None:intergenic 35.0%
TTTATGAGCCTTGGTAAACA+CGG + chr4_4:74864940-74864959 Msa0703010:intron 35.0%
CACAACATCAACTTGATCAT+TGG - chr4_4:74864977-74864996 None:intergenic 35.0%
GAATCAAAGAAGACTGAATC+AGG - chr4_4:74865192-74865211 None:intergenic 35.0%
TAAGCTTTGCAGAAAAGGTT+AGG - chr4_4:74865423-74865442 None:intergenic 35.0%
TGTGAAAGGTGAATGTATGT+TGG + chr4_4:74865573-74865592 Msa0703010:intron 35.0%
AATAGAATCAGTTCCTTGAG+TGG - chr4_4:74865888-74865907 None:intergenic 35.0%
!! CATCTCTTTGAAATGAAGTC+TGG + chr4_4:74865999-74866018 Msa0703010:intron 35.0%
TATTGCTTGCATTTAGTCCA+AGG + chr4_4:74866227-74866246 Msa0703010:intron 35.0%
ATAGTACTCATCAAGACGAA+CGG - chr4_4:74866281-74866300 None:intergenic 35.0%
ACAACACTCATGTATCCTTA+TGG + chr4_4:74866537-74866556 Msa0703010:CDS 35.0%
TGATTAGAAAAAGGATCCCA+AGG + chr4_4:74866783-74866802 Msa0703010:intron 35.0%
GATTAGAAAAAGGATCCCAA+GGG + chr4_4:74866784-74866803 Msa0703010:intron 35.0%
CAGCACCTCAGTTATAAAAA+AGG - chr4_4:74866833-74866852 None:intergenic 35.0%
!! TTTCTGAACTGTTAGCTTTG+GGG - chr4_4:74866863-74866882 None:intergenic 35.0%
!! CTTTCTGAACTGTTAGCTTT+GGG - chr4_4:74866864-74866883 None:intergenic 35.0%
! TCTTTCTGAACTGTTAGCTT+TGG - chr4_4:74866865-74866884 None:intergenic 35.0%
!! TCAGTTAATTTGTAGGAAGG+CGG - chr4_4:74866901-74866920 None:intergenic 35.0%
!! AGGGGATTCAGTTAATTTGT+AGG - chr4_4:74866908-74866927 None:intergenic 35.0%
GGTTATAGTAGTAAAGGAAG+GGG - chr4_4:74866926-74866945 None:intergenic 35.0%
GTGGTTATAGTAGTAAAGGA+AGG - chr4_4:74866928-74866947 None:intergenic 35.0%
TAGCTACAGAATTAGTTAGG+TGG - chr4_4:74866947-74866966 None:intergenic 35.0%
GGAGATACATTTAAGTCTTC+TGG + chr4_4:74867078-74867097 Msa0703010:intron 35.0%
ATAACAGGCATGTGATAACT+TGG - chr4_4:74867170-74867189 None:intergenic 35.0%
ACATGCCTGTTATCAGATAT+TGG + chr4_4:74867177-74867196 Msa0703010:intron 35.0%
CATGCCTGTTATCAGATATT+GGG + chr4_4:74867178-74867197 Msa0703010:intron 35.0%
ATGAAATTTCATTCCCGTTG+AGG + chr4_4:74867331-74867350 Msa0703010:intron 35.0%
TACAACAGACAAAAGCTCAA+AGG - chr4_4:74867357-74867376 None:intergenic 35.0%
! GAGCTTTTGTCTGTTGTAAA+TGG + chr4_4:74867359-74867378 Msa0703010:intron 35.0%
!!! GACACTCATTTTGAAATGGA+GGG - chr4_4:74867396-74867415 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+TGG - chr4_4:74867646-74867665 None:intergenic 35.0%
TTCCTTAATCTGTGTGCAAT+TGG - chr4_4:74867426-74867445 None:intergenic 35.0%
ATTGCACACAGATTAAGGAA+TGG + chr4_4:74867426-74867445 Msa0703010:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr4_4:74867646-74867665 Msa0703010:intron 35.0%
ATTGGACATCTACAAAAGAC+AGG - chr4_4:74867716-74867735 None:intergenic 35.0%
! TGTCTTTTGTAGATGTCCAA+TGG + chr4_4:74867715-74867734 Msa0703010:intron 35.0%
! TTTTGTAGATGTCCAATGGA+AGG + chr4_4:74867719-74867738 Msa0703010:intron 35.0%
AACGTTACCTTCTACTTCAA+CGG + chr4_4:74867786-74867805 Msa0703010:intron 35.0%
AAACATACCGTTGAAGTAGA+AGG - chr4_4:74867796-74867815 None:intergenic 35.0%
TAGCATAGAAAGGATGATGT+TGG + chr4_4:74867850-74867869 Msa0703010:intron 35.0%
!! CAATGTCTGTTGATTCAAGT+GGG + chr4_4:74867974-74867993 Msa0703010:CDS 35.0%
!! TGTTGATTCAAGTGGGAAAT+TGG + chr4_4:74867981-74868000 Msa0703010:CDS 35.0%
AAATGAATTTGGCATGTCAC+AGG + chr4_4:74868099-74868118 Msa0703010:intron 35.0%
AATAATGCAGCCATGATAGA+AGG + chr4_4:74868158-74868177 Msa0703010:exon 35.0%
CGTTTGAATGAAACTATTGG+AGG - chr4_4:74868258-74868277 None:intergenic 35.0%
!!! ATCCTTCCTTTTTCGATGTA+AGG + chr4_4:74868279-74868298 Msa0703010:three_prime_UTR 35.0%
!!! TCCTTCCTTTTTCGATGTAA+GGG + chr4_4:74868280-74868299 Msa0703010:three_prime_UTR 35.0%
TCTAACCCTTACATCGAAAA+AGG - chr4_4:74868288-74868307 None:intergenic 35.0%
CAGATCATCGATAAAATCAC+AGG - chr4_4:74868442-74868461 None:intergenic 35.0%
TTCGTTACTGAATGTTGTAC+AGG + chr4_4:74868530-74868549 Msa0703010:three_prime_UTR 35.0%
TGAAAAGGGTGATAATATCC+AGG + chr4_4:74868590-74868609 Msa0703010:three_prime_UTR 35.0%
AAGAAGAAGAAGAAGTCGCA+AGG + chr4_4:74863374-74863393 Msa0703010:five_prime_UTR 40.0%
TGTGTGTGAGAATCTTGGTT+TGG + chr4_4:74864047-74864066 Msa0703010:intron 40.0%
!! TGTGAGAATCTTGGTTTGGT+TGG + chr4_4:74864051-74864070 Msa0703010:intron 40.0%
CAGAGTCAACTTGTGTGTAA+TGG + chr4_4:74864119-74864138 Msa0703010:CDS 40.0%
GCACAATGCACAACAAACAT+TGG - chr4_4:74864180-74864199 None:intergenic 40.0%
AACTATATTGTGGAGGCTGT+AGG + chr4_4:74864394-74864413 Msa0703010:CDS 40.0%
TTTGCTGCATTGCTTGATCA+TGG + chr4_4:74864619-74864638 Msa0703010:intron 40.0%
TAATCCGTACACGAGGATTT+CGG - chr4_4:74864670-74864689 None:intergenic 40.0%
CAGTTCAAAACATACACTCG+AGG - chr4_4:74864736-74864755 None:intergenic 40.0%
TTTGGATAAGAGGCAATGGA+AGG + chr4_4:74864758-74864777 Msa0703010:intron 40.0%
TTGGATAAGAGGCAATGGAA+GGG + chr4_4:74864759-74864778 Msa0703010:intron 40.0%
ACGACAAATGACCTCAAAAG+TGG - chr4_4:74864917-74864936 None:intergenic 40.0%
!! TGTCGTGTTTTTATGAGCCT+TGG + chr4_4:74864931-74864950 Msa0703010:intron 40.0%
! TTGATGTTGTGACTTGTGAG+TGG + chr4_4:74864986-74865005 Msa0703010:intron 40.0%
! TCTTATTTAGCAACAGCGTC+TGG - chr4_4:74865111-74865130 None:intergenic 40.0%
! TATACGGGATTCCTTTTGCA+TGG + chr4_4:74865279-74865298 Msa0703010:intron 40.0%
! ATACGGGATTCCTTTTGCAT+GGG + chr4_4:74865280-74865299 Msa0703010:intron 40.0%
GAAGCTATTTACTGCACGAT+TGG + chr4_4:74865447-74865466 Msa0703010:intron 40.0%
ATTTACTGCACGATTGGTGT+TGG + chr4_4:74865453-74865472 Msa0703010:intron 40.0%
! TTTACTGCACGATTGGTGTT+GGG + chr4_4:74865454-74865473 Msa0703010:intron 40.0%
TCCAATAACTGGAATGAGGT+TGG + chr4_4:74865501-74865520 Msa0703010:intron 40.0%
CCAATAACTGGAATGAGGTT+GGG + chr4_4:74865502-74865521 Msa0703010:intron 40.0%
CATTCACCTTTCACAAGCAT+AGG - chr4_4:74865568-74865587 None:intergenic 40.0%
! AGACGGGATTTTATAGTACC+AGG - chr4_4:74865758-74865777 None:intergenic 40.0%
AAAATCCCGTCTTATGTTCC+CGG + chr4_4:74865766-74865785 Msa0703010:intron 40.0%
CATTTCAAAGAGATGACGTG+AGG - chr4_4:74865994-74866013 None:intergenic 40.0%
TTTGCACACTACGAGATGTT+TGG + chr4_4:74866357-74866376 Msa0703010:intron 40.0%
! AAGGATACATGAGTGTTGTC+CGG - chr4_4:74866536-74866555 None:intergenic 40.0%
CAAACAGCACATTTGACTGA+AGG - chr4_4:74866567-74866586 None:intergenic 40.0%
!!! GGCAGCCTTTTTTATAACTG+AGG + chr4_4:74866825-74866844 Msa0703010:intron 40.0%
!! TTAATTTGTAGGAAGGCGGA+AGG - chr4_4:74866897-74866916 None:intergenic 40.0%
GGATCCCAATATCTGATAAC+AGG - chr4_4:74867185-74867204 None:intergenic 40.0%
TTTCCCTAGGGCATATAAGT+CGG - chr4_4:74867247-74867266 None:intergenic 40.0%
TATATGCCCTAGGGAAACTT+TGG + chr4_4:74867250-74867269 Msa0703010:intron 40.0%
GAGAATCCAAAGTTTCCCTA+GGG - chr4_4:74867259-74867278 None:intergenic 40.0%
TGAGAATCCAAAGTTTCCCT+AGG - chr4_4:74867260-74867279 None:intergenic 40.0%
!!! CGACACTCATTTTGAAATGG+AGG - chr4_4:74867397-74867416 None:intergenic 40.0%
AGCCAATTGCACACAGATTA+AGG + chr4_4:74867421-74867440 Msa0703010:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr4_4:74867650-74867669 Msa0703010:intron 40.0%
! GATTTTCTACCACCACTGTT+TGG - chr4_4:74867954-74867973 None:intergenic 40.0%
CCACTTGAATCAACAGACAT+TGG - chr4_4:74867976-74867995 None:intergenic 40.0%
!! CCAATGTCTGTTGATTCAAG+TGG + chr4_4:74867973-74867992 Msa0703010:CDS 40.0%
ACCCTTACATCGAAAAAGGA+AGG - chr4_4:74868284-74868303 None:intergenic 40.0%
AGAAGAAGAAGTCGCAAGGA+AGG + chr4_4:74863378-74863397 Msa0703010:five_prime_UTR 45.0%
AAGTCGCAAGGAAGGAAGAA+AGG + chr4_4:74863386-74863405 Msa0703010:five_prime_UTR 45.0%
AGTCGCAAGGAAGGAAGAAA+GGG + chr4_4:74863387-74863406 Msa0703010:five_prime_UTR 45.0%
GTGTGTGTGTGTGAGAATCT+TGG + chr4_4:74864042-74864061 Msa0703010:intron 45.0%
!! AGCATGTTGCTTTACCCTAG+AGG + chr4_4:74864149-74864168 Msa0703010:CDS 45.0%
!! GCATGTTGCTTTACCCTAGA+GGG + chr4_4:74864150-74864169 Msa0703010:CDS 45.0%
!! CATGTTGCTTTACCCTAGAG+GGG + chr4_4:74864151-74864170 Msa0703010:CDS 45.0%
! AAACATTGGTTGCCCCTCTA+GGG - chr4_4:74864166-74864185 None:intergenic 45.0%
CATACTGTAAACCTTGCTCC+AGG + chr4_4:74864468-74864487 Msa0703010:CDS 45.0%
GCTTGACAGATGAAGCTTAG+TGG + chr4_4:74864517-74864536 Msa0703010:intron 45.0%
TAGTTAAGCGGGTGGCATAT+TGG + chr4_4:74864548-74864567 Msa0703010:intron 45.0%
! GATTACCAGGGGGTACATTA+AGG + chr4_4:74864685-74864704 Msa0703010:intron 45.0%
AATGACCTTAATGTACCCCC+TGG - chr4_4:74864693-74864712 None:intergenic 45.0%
TGGATAAGAGGCAATGGAAG+GGG + chr4_4:74864760-74864779 Msa0703010:intron 45.0%
! AATGGAAGGGGGTTAGTGAA+AGG + chr4_4:74864772-74864791 Msa0703010:intron 45.0%
! AAGGGGGTTAGTGAAAGGTT+TGG + chr4_4:74864777-74864796 Msa0703010:intron 45.0%
ACAATGGAACACTAGGGAAG+AGG - chr4_4:74865073-74865092 None:intergenic 45.0%
! TACGGGATTCCTTTTGCATG+GGG + chr4_4:74865281-74865300 Msa0703010:intron 45.0%
AAAGGATGGGTGCTTAGTCT+TGG + chr4_4:74865339-74865358 Msa0703010:intron 45.0%
!! GGTGCTTAGTCTTGGTAAGT+TGG + chr4_4:74865347-74865366 Msa0703010:intron 45.0%
TTCCAGTTATTGGAGCCAGT+GGG - chr4_4:74865495-74865514 None:intergenic 45.0%
ATTCCAGTTATTGGAGCCAG+TGG - chr4_4:74865496-74865515 None:intergenic 45.0%
TGGCTCCAATAACTGGAATG+AGG + chr4_4:74865497-74865516 Msa0703010:intron 45.0%
CCCAACCTCATTCCAGTTAT+TGG - chr4_4:74865505-74865524 None:intergenic 45.0%
GGTGAATGTATGTTGGAGAG+TGG + chr4_4:74865580-74865599 Msa0703010:intron 45.0%
AAATCCCGTCTTATGTTCCC+GGG + chr4_4:74865767-74865786 Msa0703010:intron 45.0%
ATCAGATTCCACACCACTCA+AGG + chr4_4:74865872-74865891 Msa0703010:intron 45.0%
AATCAGTTCCTTGAGTGGTG+TGG - chr4_4:74865883-74865902 None:intergenic 45.0%
TTGACTGAAGGAGCTCCATA+AGG - chr4_4:74866555-74866574 None:intergenic 45.0%
TGTTGAAGGGGAAAACCCTT+GGG - chr4_4:74866802-74866821 None:intergenic 45.0%
TTGTTGAAGGGGAAAACCCT+TGG - chr4_4:74866803-74866822 None:intergenic 45.0%
! AGGGTTTTCCCCTTCAACAA+AGG + chr4_4:74866803-74866822 Msa0703010:intron 45.0%
! GGGTTTTCCCCTTCAACAAA+GGG + chr4_4:74866804-74866823 Msa0703010:intron 45.0%
AAAGGCTGCCCTTTGTTGAA+GGG - chr4_4:74866815-74866834 None:intergenic 45.0%
AAAAGGCTGCCCTTTGTTGA+AGG - chr4_4:74866816-74866835 None:intergenic 45.0%
AAACCCGACTTATATGCCCT+AGG + chr4_4:74867240-74867259 Msa0703010:intron 45.0%
AACCCGACTTATATGCCCTA+GGG + chr4_4:74867241-74867260 Msa0703010:intron 45.0%
TTCCCTAGGGCATATAAGTC+GGG - chr4_4:74867246-74867265 None:intergenic 45.0%
AAAAGCTCAAAGGCCTCAAC+GGG - chr4_4:74867347-74867366 None:intergenic 45.0%
CAAAAGCTCAAAGGCCTCAA+CGG - chr4_4:74867348-74867367 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr4_4:74867649-74867668 Msa0703010:intron 45.0%
AGGAATTGGAAGCCTTCCAT+TGG - chr4_4:74867734-74867753 None:intergenic 45.0%
AATGGAAGGCTTCCAATTCC+TGG + chr4_4:74867733-74867752 Msa0703010:intron 45.0%
TGAGGTCTATGACCAGGAAT+TGG - chr4_4:74867748-74867767 None:intergenic 45.0%
ATTCCTGGTCATAGACCTCA+CGG + chr4_4:74867748-74867767 Msa0703010:intron 45.0%
!! ACTGTTTGGCTCTGAGATTG+GGG - chr4_4:74867940-74867959 None:intergenic 45.0%
!! CACTGTTTGGCTCTGAGATT+GGG - chr4_4:74867941-74867960 None:intergenic 45.0%
AGAGAAGCAGTCAAATGCAG+TGG - chr4_4:74868048-74868067 None:intergenic 45.0%
CAGGTGAGCAATGTTGTTGT+TGG + chr4_4:74868118-74868137 Msa0703010:intron 45.0%
GAGAGGACGAGTTGTGAAAA+GGG + chr4_4:74868334-74868353 Msa0703010:three_prime_UTR 45.0%
TGTGAAAAGGGCTGTGTGAT+TGG + chr4_4:74868346-74868365 Msa0703010:three_prime_UTR 45.0%
TGATCTGTTAGGACCGTGTA+TGG + chr4_4:74868455-74868474 Msa0703010:three_prime_UTR 45.0%
TGATAATATCCAGGACCAGG+AGG + chr4_4:74868599-74868618 Msa0703010:three_prime_UTR 45.0%
!! TCTTAAAATAATAAAAAAAA+AGG + chr4_4:74863565-74863584 Msa0703010:five_prime_UTR 5.0%
!!! ATAAAATTTAAAATGTTATA+CGG + chr4_4:74865263-74865282 Msa0703010:intron 5.0%
GAAGTAGAGAGGAAGATGCG+AGG + chr4_4:74863327-74863346 Msa0703010:five_prime_UTR 50.0%
GAATCGCTTGTCGCAGAACA+CGG + chr4_4:74863629-74863648 Msa0703010:five_prime_UTR 50.0%
! CAAACATTGGTTGCCCCTCT+AGG - chr4_4:74864167-74864186 None:intergenic 50.0%
ATTACCTCTGTTCCTCCACC+TGG + chr4_4:74864206-74864225 Msa0703010:CDS 50.0%
! TACCGTACTGATGTTCCTGC+AGG + chr4_4:74864357-74864376 Msa0703010:intron 50.0%
! ACCGTACTGATGTTCCTGCA+GGG + chr4_4:74864358-74864377 Msa0703010:intron 50.0%
TCCCTGCAGGAACATCAGTA+CGG - chr4_4:74864362-74864381 None:intergenic 50.0%
TACTGATGTTCCTGCAGGGA+TGG + chr4_4:74864362-74864381 Msa0703010:intron 50.0%
TGAGACATATCCATCCCTGC+AGG - chr4_4:74864375-74864394 None:intergenic 50.0%
CGTTCCGAAATCCTCGTGTA+CGG + chr4_4:74864663-74864682 Msa0703010:intron 50.0%
! ATCCTCGTGTACGGATTACC+AGG + chr4_4:74864672-74864691 Msa0703010:intron 50.0%
! TCCTCGTGTACGGATTACCA+GGG + chr4_4:74864673-74864692 Msa0703010:intron 50.0%
GGATAAGAGGCAATGGAAGG+GGG + chr4_4:74864761-74864780 Msa0703010:intron 50.0%
GAGCCTTGGTAAACACGGTT+TGG + chr4_4:74864945-74864964 Msa0703010:intron 50.0%
CAGCCAAACCGTGTTTACCA+AGG - chr4_4:74864951-74864970 None:intergenic 50.0%
! ACGGGATTCCTTTTGCATGG+GGG + chr4_4:74865282-74865301 Msa0703010:intron 50.0%
CCAAATGACCCCCATGCAAA+AGG - chr4_4:74865293-74865312 None:intergenic 50.0%
! CCTTTTGCATGGGGGTCATT+TGG + chr4_4:74865290-74865309 Msa0703010:intron 50.0%
ATGGGGGTCATTTGGCTACT+CGG + chr4_4:74865298-74865317 Msa0703010:intron 50.0%
!! AACCCACTGGCTCCAATAAC+TGG + chr4_4:74865490-74865509 Msa0703010:intron 50.0%
TTTCCAAAAAGGTGGCAGCC+CGG + chr4_4:74865540-74865559 Msa0703010:intron 50.0%
CTTTCACAAGCATAGGAGCC+GGG - chr4_4:74865561-74865580 None:intergenic 50.0%
CCTTTCACAAGCATAGGAGC+CGG - chr4_4:74865562-74865581 None:intergenic 50.0%
TCTTCCCGGGAACATAAGAC+GGG - chr4_4:74865774-74865793 None:intergenic 50.0%
CTCTTCCCGGGAACATAAGA+CGG - chr4_4:74865775-74865794 None:intergenic 50.0%
AAATTTGTCCGCCTCTTCCC+GGG - chr4_4:74865787-74865806 None:intergenic 50.0%
CAAATTTGTCCGCCTCTTCC+CGG - chr4_4:74865788-74865807 None:intergenic 50.0%
AAGGCTGCCCTTTGTTGAAG+GGG - chr4_4:74866814-74866833 None:intergenic 50.0%
TTTGTAGGAAGGCGGAAGGA+GGG - chr4_4:74866893-74866912 None:intergenic 50.0%
ATTTGTAGGAAGGCGGAAGG+AGG - chr4_4:74866894-74866913 None:intergenic 50.0%
TAGGACGACGTAGACACGAA+TGG - chr4_4:74867123-74867142 None:intergenic 50.0%
GGCATATAAGTCGGGTTTGC+AGG - chr4_4:74867238-74867257 None:intergenic 50.0%
TTCCTGGTCATAGACCTCAC+GGG + chr4_4:74867749-74867768 Msa0703010:intron 50.0%
AGAAGGTAACGTTCCCGAGT+CGG - chr4_4:74867779-74867798 None:intergenic 50.0%
!! GAGATTGGGGCATTGACTGT+AGG - chr4_4:74867927-74867946 None:intergenic 50.0%
!! CCACTGTTTGGCTCTGAGAT+TGG - chr4_4:74867942-74867961 None:intergenic 50.0%
CCAATCTCAGAGCCAAACAG+TGG + chr4_4:74867939-74867958 Msa0703010:CDS 50.0%
ATCTCAGAGCCAAACAGTGG+TGG + chr4_4:74867942-74867961 Msa0703010:CDS 50.0%
GGAGAGGACGAGTTGTGAAA+AGG + chr4_4:74868333-74868352 Msa0703010:three_prime_UTR 50.0%
GGGTGATAATATCCAGGACC+AGG + chr4_4:74868596-74868615 Msa0703010:three_prime_UTR 50.0%
CTAACAATACCTGCGGCACC+AGG - chr4_4:74863656-74863675 None:intergenic 55.0%
ACACACACACACACACACGC+AGG - chr4_4:74864024-74864043 None:intergenic 55.0%
CTTACCAGGTGGAGGAACAG+AGG - chr4_4:74864213-74864232 None:intergenic 55.0%
! GAACAGCGTTGGAGCTTACC+AGG - chr4_4:74864227-74864246 None:intergenic 55.0%
! CCTCGTGTACGGATTACCAG+GGG + chr4_4:74864674-74864693 Msa0703010:intron 55.0%
! CTCGTGTACGGATTACCAGG+GGG + chr4_4:74864675-74864694 Msa0703010:intron 55.0%
! GGTTTGGTTGTTTGGCCCGA+CGG + chr4_4:74864793-74864812 Msa0703010:intron 55.0%
GTTTGGTTGTTTGGCCCGAC+GGG + chr4_4:74864794-74864813 Msa0703010:intron 55.0%
TGAGAAACCACCATCCCGTC+GGG - chr4_4:74864811-74864830 None:intergenic 55.0%
GTGAGAAACCACCATCCCGT+CGG - chr4_4:74864812-74864831 None:intergenic 55.0%
TGGGGGTCATTTGGCTACTC+GGG + chr4_4:74865299-74865318 Msa0703010:intron 55.0%
CCGGCTCCTATGCTTGTGAA+AGG + chr4_4:74865559-74865578 Msa0703010:intron 55.0%
CGTCTTATGTTCCCGGGAAG+AGG + chr4_4:74865773-74865792 Msa0703010:intron 55.0%
CTTATGTTCCCGGGAAGAGG+CGG + chr4_4:74865776-74865795 Msa0703010:intron 55.0%
CAAGTAGCCCATGTCCCTTG+CGG + chr4_4:74866504-74866523 Msa0703010:CDS 55.0%
AAGTAGCCCATGTCCCTTGC+GGG + chr4_4:74866505-74866524 Msa0703010:CDS 55.0%
TTGTAGGAAGGCGGAAGGAG+GGG - chr4_4:74866892-74866911 None:intergenic 55.0%
CATTCAAAGCCTCCTGGTCC+TGG - chr4_4:74868611-74868630 None:intergenic 55.0%
CTTGTCGCAGAACACGGTCC+TGG + chr4_4:74863635-74863654 Msa0703010:five_prime_UTR 60.0%
CGTTGGAGCTTACCAGGTGG+AGG - chr4_4:74864221-74864240 None:intergenic 60.0%
! CAGCGTTGGAGCTTACCAGG+TGG - chr4_4:74864224-74864243 None:intergenic 60.0%
CCCCTGGTAATCCGTACACG+AGG - chr4_4:74864677-74864696 None:intergenic 60.0%
! TTGGAGCCAGTGGGTTCGCA+GGG - chr4_4:74865486-74865505 None:intergenic 60.0%
! ATTGGAGCCAGTGGGTTCGC+AGG - chr4_4:74865487-74865506 None:intergenic 60.0%
GCAGTTCCCGCAAGGGACAT+GGG - chr4_4:74866514-74866533 None:intergenic 60.0%
ATGTCCCTTGCGGGAACTGC+CGG + chr4_4:74866514-74866533 Msa0703010:CDS 60.0%
TTGTCCGGCAGTTCCCGCAA+GGG - chr4_4:74866521-74866540 None:intergenic 60.0%
TGTAGGAAGGCGGAAGGAGG+GGG - chr4_4:74866891-74866910 None:intergenic 60.0%
GTCCCGTGAGGTCTATGACC+AGG - chr4_4:74867754-74867773 None:intergenic 60.0%
ACCTCACGGGACAACCGACT+CGG + chr4_4:74867762-74867781 Msa0703010:intron 60.0%
GGTTGTTTGGCCCGACGGGA+TGG + chr4_4:74864798-74864817 Msa0703010:intron 65.0%
TGTTTGGCCCGACGGGATGG+TGG + chr4_4:74864801-74864820 Msa0703010:intron 65.0%
AGCAAGCCCTGCGAACCCAC+TGG + chr4_4:74865477-74865496 Msa0703010:intron 65.0%
! GAGCCGGGCTGCCACCTTTT+TGG - chr4_4:74865546-74865565 None:intergenic 65.0%
GGCAGTTCCCGCAAGGGACA+TGG - chr4_4:74866515-74866534 None:intergenic 65.0%
GTTGTCCGGCAGTTCCCGCA+AGG - chr4_4:74866522-74866541 None:intergenic 65.0%
! CCTCACGGGACAACCGACTC+GGG + chr4_4:74867763-74867782 Msa0703010:intron 65.0%
!! GAACACGGTCCTGGTGCCGC+AGG + chr4_4:74863644-74863663 Msa0703010:five_prime_UTR 70.0%
CCCGAGTCGGTTGTCCCGTG+AGG - chr4_4:74867766-74867785 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 74863215 74868633 74863215 ID=Msa0703010;Name=Msa0703010
chr4_4 mRNA 74863215 74868633 74863215 ID=Msa0703010-mRNA-1;Parent=Msa0703010;Name=Msa0703010-mRNA-1;_AED=0.09;_eAED=0.14;_QI=453|0.8|0.83|1|1|1|6|471|175
chr4_4 exon 74863215 74863665 74863215 ID=Msa0703010-mRNA-1:exon:23342;Parent=Msa0703010-mRNA-1
chr4_4 exon 74864114 74864227 74864114 ID=Msa0703010-mRNA-1:exon:23343;Parent=Msa0703010-mRNA-1
chr4_4 exon 74864379 74864489 74864379 ID=Msa0703010-mRNA-1:exon:23344;Parent=Msa0703010-mRNA-1
chr4_4 exon 74866496 74866608 74866496 ID=Msa0703010-mRNA-1:exon:23345;Parent=Msa0703010-mRNA-1
chr4_4 exon 74867853 74868002 74867853 ID=Msa0703010-mRNA-1:exon:23346;Parent=Msa0703010-mRNA-1
chr4_4 exon 74868121 74868633 74868121 ID=Msa0703010-mRNA-1:exon:23347;Parent=Msa0703010-mRNA-1
chr4_4 five_prime_UTR 74863215 74863665 74863215 ID=Msa0703010-mRNA-1:five_prime_utr;Parent=Msa0703010-mRNA-1
chr4_4 five_prime_UTR 74864114 74864115 74864114 ID=Msa0703010-mRNA-1:five_prime_utr;Parent=Msa0703010-mRNA-1
chr4_4 CDS 74864116 74864227 74864116 ID=Msa0703010-mRNA-1:cds;Parent=Msa0703010-mRNA-1
chr4_4 CDS 74864379 74864489 74864379 ID=Msa0703010-mRNA-1:cds;Parent=Msa0703010-mRNA-1
chr4_4 CDS 74866496 74866608 74866496 ID=Msa0703010-mRNA-1:cds;Parent=Msa0703010-mRNA-1
chr4_4 CDS 74867853 74868002 74867853 ID=Msa0703010-mRNA-1:cds;Parent=Msa0703010-mRNA-1
chr4_4 CDS 74868121 74868162 74868121 ID=Msa0703010-mRNA-1:cds;Parent=Msa0703010-mRNA-1
chr4_4 three_prime_UTR 74868163 74868633 74868163 ID=Msa0703010-mRNA-1:three_prime_utr;Parent=Msa0703010-mRNA-1
Gene Sequence

>Msa0703010

ATGCAGAGTCAACTTGTGTGTAATGGTTGTAGGAGCATGTTGCTTTACCCTAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCACCTGGGATGGATATGTCTCAACTATATTGTGGAGGCTGTAGGACATTGTTAATGTACACACGCGGAGCTACAAGTGTCAGATGTTCTTGCTGTCATACTGTAAACCTTGCTCCAGTATCTAATCAAGTAGCCCATGTCCCTTGCGGGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCTTCAGTCAAATGTGCTGTTTGTCACTATGTTACGAATATCAATCATAGAAAGGATGATGTTGGTGTTTTCTGTTCTGATAATCTAATGAATATCAATGTGATTCTGTTTTACTACCTACAGTCAATGCCCCAATCTCAGAGCCAAACAGTGGTGGTAGAAAATCCAATGTCTGTTGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGTGTTACAACAGATAAGAAATAA
Protein sequence

>Msa0703010

MQSQLVCNGCRSMLLYPRGATNVCCALCNTITSVPPPGMDMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPVSNQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYVTNINHRKDDVGVFCSDNLMNINVILFYYLQSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK*