AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1395090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395090 MtrunA17_Chr8g0381011 79.255 188 14 2 1 175 1 176 5.41e-99 283
Msa1395090 MtrunA17_Chr2g0303181 65.000 180 51 3 1 175 1 173 1.06e-76 226
Msa1395090 MtrunA17_Chr4g0054701 73.636 110 29 0 2 111 31 140 1.55e-55 172
Msa1395090 MtrunA17_Chr4g0047341 52.778 72 34 0 41 112 40 111 9.01e-22 86.3
Msa1395090 MtrunA17_Chr4g0047341 45.588 68 36 1 3 70 41 107 7.69e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395090 AT4G20380.2 65.054 186 52 4 1 175 6 189 2.12e-64 196
Msa1395090 AT4G20380.7 65.054 186 52 4 1 175 6 189 2.12e-64 196
Msa1395090 AT4G20380.6 65.054 186 52 4 1 175 1 184 2.29e-64 196
Msa1395090 AT4G20380.3 65.054 186 52 4 1 175 1 184 2.29e-64 196
Msa1395090 AT4G20380.4 65.054 186 52 4 1 175 1 184 2.29e-64 196
Msa1395090 AT4G20380.1 65.054 186 52 4 1 175 1 184 2.29e-64 196
Msa1395090 AT4G20380.5 65.054 186 52 4 1 175 1 184 2.29e-64 196
Msa1395090 AT4G20380.8 57.075 212 52 4 1 175 1 210 4.49e-60 186
Msa1395090 AT1G32540.1 72.727 110 30 0 2 111 65 174 3.10e-55 173
Msa1395090 AT1G32540.3 72.727 110 30 0 2 111 32 141 4.05e-54 169
Msa1395090 AT1G32540.3 41.667 96 52 2 42 136 33 125 9.73e-14 65.5
Msa1395090 AT1G32540.2 72.727 110 30 0 2 111 32 141 4.05e-54 169
Msa1395090 AT1G32540.2 41.667 96 52 2 42 136 33 125 9.73e-14 65.5
Msa1395090 AT1G32540.5 74.074 108 28 0 2 109 32 139 1.59e-53 167
Msa1395090 AT1G32540.5 41.667 96 52 2 42 136 33 125 1.13e-13 65.5
Msa1395090 AT4G20380.9 69.106 123 27 3 1 112 1 123 8.50e-50 157
Msa1395090 AT4G20380.9 43.956 91 48 1 43 130 4 94 1.89e-16 72.0
Msa1395090 AT1G32540.7 76.389 72 17 0 2 73 65 136 1.88e-36 124
Msa1395090 AT1G32540.7 52.941 68 31 1 42 108 66 133 5.94e-14 65.9
Msa1395090 AT1G32540.4 76.389 72 17 0 2 73 32 103 1.10e-35 120
Msa1395090 AT1G32540.4 52.941 68 31 1 42 108 33 100 1.28e-13 64.3
Msa1395090 AT1G32540.6 76.389 72 17 0 2 73 32 103 1.10e-35 120
Msa1395090 AT1G32540.6 52.941 68 31 1 42 108 33 100 1.28e-13 64.3
Msa1395090 AT4G21610.1 52.703 74 35 0 40 113 57 130 7.76e-22 86.7
Msa1395090 AT4G21610.2 53.425 73 34 0 40 112 57 129 6.29e-21 84.3

Find 89 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGATTTGATAATAATTT+AGG 0.148987 tig0021904:+71328 Msa1395090:five_prime_UTR
CACTGTTTGGCTCTGAGATT+GGG 0.218971 tig0021904:-76019 None:intergenic
ACACTCTTTCGAAATTTCTT+TGG 0.276383 tig0021904:-71387 None:intergenic
ACCAGGAGGCTTTGAATGTT+TGG 0.280256 tig0021904:+76694 Msa1395090:three_prime_UTR
TTAAGAAGAAAACGTTGATA+TGG 0.280422 tig0021904:-71642 None:intergenic
CCACTGTTTGGCTCTGAGAT+TGG 0.301892 tig0021904:-76020 None:intergenic
TCTAACCCTTACATCGAAAA+AGG 0.308859 tig0021904:-76366 None:intergenic
TGTTGATTCAAGTGGGAAAT+TGG 0.322882 tig0021904:+76062 Msa1395090:CDS
ATTCGTTTGAATGAAACTAT+TGG 0.341778 tig0021904:-76339 None:intergenic
ACAACACTCATGTATCCTTA+TGG 0.360459 tig0021904:+74618 Msa1395090:CDS
TGATTGAATTGAATGAGAAT+TGG 0.366028 tig0021904:-71575 None:intergenic
TATCAGTATGTATATGTATA+TGG 0.369936 tig0021904:+76393 Msa1395090:three_prime_UTR
TTTACGAGTGATTTGTGAAA+AGG 0.370779 tig0021904:+76656 Msa1395090:three_prime_UTR
TAAGAAGAAAACGTTGATAT+GGG 0.372153 tig0021904:-71641 None:intergenic
AAACGTTGATATGGGGATAA+AGG 0.376173 tig0021904:-71633 None:intergenic
ATGCGAGGAAAATAAAATAT+TGG 0.385227 tig0021904:+71439 Msa1395090:five_prime_UTR
GATTGAATTGAATGAGAATT+GGG 0.398848 tig0021904:-71574 None:intergenic
AAGTAGCCCATGTCCCTTGC+GGG 0.401008 tig0021904:+74586 Msa1395090:CDS
GGCAGTTCCCGCAAGGGACA+TGG 0.407023 tig0021904:-74593 None:intergenic
CATTCAAAGCCTCCTGGTCC+TGG 0.415471 tig0021904:-76689 None:intergenic
AATAATGCAGCCATGATAGA+AGG 0.426858 tig0021904:+76239 Msa1395090:exon
TGGGAATAATTTGATTGTGT+TGG 0.428702 tig0021904:-71555 None:intergenic
CAAACATTGGTTGCCCCTCT+AGG 0.429678 tig0021904:-72245 None:intergenic
TATACACATGCAATATCTTC+TGG 0.438927 tig0021904:-76296 None:intergenic
ATGTCCCTTGCGGGAACTGC+CGG 0.445439 tig0021904:+74595 Msa1395090:CDS
TGTGAAAAGGGCTGTGTGAT+TGG 0.446871 tig0021904:+76427 Msa1395090:three_prime_UTR
GAGAGGACGAGTTGTGAAAA+GGG 0.449859 tig0021904:+76415 Msa1395090:three_prime_UTR
TTCGTTACTGAATGTTGTAC+AGG 0.453491 tig0021904:+76611 Msa1395090:three_prime_UTR
CCACTTGAATCAACAGACAT+TGG 0.458263 tig0021904:-76054 None:intergenic
CAGGTGAGCAATGTTGTTGT+TGG 0.459951 tig0021904:+76199 Msa1395090:intron
GTGTGATATAATAACAGATC+TGG 0.464583 tig0021904:+76577 Msa1395090:three_prime_UTR
TTACGAGTGATTTGTGAAAA+GGG 0.470194 tig0021904:+76657 Msa1395090:three_prime_UTR
TGATCTGTTAGGACCGTGTA+TGG 0.475377 tig0021904:+76536 Msa1395090:three_prime_UTR
AAGTCGCAAGGAAGGAAGAA+AGG 0.479378 tig0021904:+71480 Msa1395090:five_prime_UTR
GGAGAGGACGAGTTGTGAAA+AGG 0.487910 tig0021904:+76414 Msa1395090:three_prime_UTR
TGGTGATTAATAGCATAGAA+AGG 0.493805 tig0021904:+75921 Msa1395090:intron
CGTTTGAATGAAACTATTGG+AGG 0.497853 tig0021904:-76336 None:intergenic
CTAAATTATTATCAAATCAA+AGG 0.500333 tig0021904:-71327 None:intergenic
ATAAAATCACAGGCTTATCA+AGG 0.508700 tig0021904:-76510 None:intergenic
ATATACTGTACCTTCTATCA+TGG 0.516123 tig0021904:-76249 None:intergenic
AAACATTGGTTGCCCCTCTA+GGG 0.521552 tig0021904:-72244 None:intergenic
AGAAGAAGAAGTCGCAAGGA+AGG 0.523100 tig0021904:+71472 Msa1395090:five_prime_UTR
GCATGTTGCTTTACCCTAGA+GGG 0.526229 tig0021904:+72231 Msa1395090:CDS
TGAAAAGGGTGATAATATCC+AGG 0.532173 tig0021904:+76671 Msa1395090:three_prime_UTR
TTGACTGAAGGAGCTCCATA+AGG 0.536562 tig0021904:-74633 None:intergenic
GAACACGGTCCTGGTGCCGC+AGG 0.537469 tig0021904:+71738 Msa1395090:five_prime_UTR
AAGGATACATGAGTGTTGTC+CGG 0.538194 tig0021904:-74614 None:intergenic
TCCAAACATTCAAAGCCTCC+TGG 0.539567 tig0021904:-76695 None:intergenic
AAGGAAAAGAAATATGAAAG+AGG 0.541246 tig0021904:-71614 None:intergenic
ACTGTTTGGCTCTGAGATTG+GGG 0.544116 tig0021904:-76018 None:intergenic
AGTCGCAAGGAAGGAAGAAA+GGG 0.544782 tig0021904:+71481 Msa1395090:five_prime_UTR
GTTATTTAGTAAGTTGTAGA+CGG 0.549219 tig0021904:+76467 Msa1395090:three_prime_UTR
AGGAAAAGAAATATGAAAGA+GGG 0.549490 tig0021904:-71613 None:intergenic
GTTGTCCGGCAGTTCCCGCA+AGG 0.550249 tig0021904:-74600 None:intergenic
CTTGTCGCAGAACACGGTCC+TGG 0.553516 tig0021904:+71729 Msa1395090:five_prime_UTR
TAGCATAGAAAGGATGATGT+TGG 0.554099 tig0021904:+75931 Msa1395090:intron
CTAACAATACCTGCGGCACC+AGG 0.557233 tig0021904:-71747 None:intergenic
AACTTGTGTGTAATGGTTGT+AGG 0.557278 tig0021904:+72207 Msa1395090:CDS
GCAGTTCCCGCAAGGGACAT+GGG 0.560859 tig0021904:-74592 None:intergenic
CAGAGTCAACTTGTGTGTAA+TGG 0.563559 tig0021904:+72200 Msa1395090:CDS
CAGATCATCGATAAAATCAC+AGG 0.563654 tig0021904:-76520 None:intergenic
AAGATGAAGATGAAGTAGAG+AGG 0.567265 tig0021904:+71413 Msa1395090:five_prime_UTR
GATATGTCTCAACTATATTG+TGG 0.572327 tig0021904:+72465 Msa1395090:CDS
CCAATGTCTGTTGATTCAAG+TGG 0.574429 tig0021904:+76054 Msa1395090:CDS
AAGAAGAAAACGTTGATATG+GGG 0.575509 tig0021904:-71640 None:intergenic
GAGATTGGGGCATTGACTGT+AGG 0.580252 tig0021904:-76005 None:intergenic
GAATCGCTTGTCGCAGAACA+CGG 0.581082 tig0021904:+71723 Msa1395090:five_prime_UTR
AACTATATTGTGGAGGCTGT+AGG 0.590469 tig0021904:+72475 Msa1395090:CDS
TTGTCCGGCAGTTCCCGCAA+GGG 0.594632 tig0021904:-74599 None:intergenic
ATTACCTCTGTTCCTCCACC+TGG 0.595203 tig0021904:+72287 Msa1395090:CDS
GAAGTAGAGAGGAAGATGCG+AGG 0.596498 tig0021904:+71424 Msa1395090:five_prime_UTR
CATACTGTAAACCTTGCTCC+AGG 0.599148 tig0021904:+72549 Msa1395090:CDS
AATATACATTACCTGGAGCA+AGG 0.599284 tig0021904:-72560 None:intergenic
CAATGTCTGTTGATTCAAGT+GGG 0.600952 tig0021904:+76055 Msa1395090:CDS
GGGTGATAATATCCAGGACC+AGG 0.601001 tig0021904:+76677 Msa1395090:three_prime_UTR
CGTTGGAGCTTACCAGGTGG+AGG 0.603157 tig0021904:-72299 None:intergenic
GCACAATGCACAACAAACAT+TGG 0.623040 tig0021904:-72258 None:intergenic
ATCTCAGAGCCAAACAGTGG+TGG 0.625723 tig0021904:+76023 Msa1395090:CDS
AGCATGTTGCTTTACCCTAG+AGG 0.627744 tig0021904:+72230 Msa1395090:CDS
CAAACAGCACATTTGACTGA+AGG 0.639168 tig0021904:-74645 None:intergenic
ATGTCTCAACTATATTGTGG+AGG 0.644670 tig0021904:+72468 Msa1395090:CDS
CAAGTAGCCCATGTCCCTTG+CGG 0.646539 tig0021904:+74585 Msa1395090:CDS
CATGTTGCTTTACCCTAGAG+GGG 0.647362 tig0021904:+72232 Msa1395090:CDS
CTTACCAGGTGGAGGAACAG+AGG 0.665101 tig0021904:-72291 None:intergenic
TGATAATATCCAGGACCAGG+AGG 0.672230 tig0021904:+76680 Msa1395090:three_prime_UTR
GTATGTATATGTATATGGAG+AGG 0.676077 tig0021904:+76398 Msa1395090:three_prime_UTR
CCAATCTCAGAGCCAAACAG+TGG 0.689166 tig0021904:+76020 Msa1395090:CDS
TTGTATCGAATATCCATACA+CGG 0.711052 tig0021904:-76549 None:intergenic
ACATTGTTAATGTACACACG+CGG 0.795848 tig0021904:+72498 Msa1395090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTTAAAATGTTATAC+GGG + tig0021904:73345-73364 Msa1395090:intron 10.0%
!! TTAAAGAAAAAATAATACTT+TGG + tig0021904:75597-75616 Msa1395090:intron 10.0%
!! CTAAATTATTATCAAATCAA+AGG - tig0021904:71330-71349 None:intergenic 15.0%
!!! CTTTGATTTGATAATAATTT+AGG + tig0021904:71328-71347 Msa1395090:five_prime_UTR 15.0%
!! AAACAAAAAAACAAAAACAA+AGG - tig0021904:71775-71794 None:intergenic 15.0%
!!! TTTGTTTTATTATACGTTTT+GGG + tig0021904:71826-71845 Msa1395090:intron 15.0%
!!! ATCATTTTTTTGTTCTTATT+TGG + tig0021904:71898-71917 Msa1395090:intron 15.0%
!!! TTCAACAAGATTTTTTTTTT+AGG - tig0021904:74021-74040 None:intergenic 15.0%
!!! TTTTTTTCTAGTTTTGTTTT+TGG + tig0021904:75901-75920 Msa1395090:intron 15.0%
!! AGGATATGATAAAAAAAATG+TGG + tig0021904:71348-71367 Msa1395090:five_prime_UTR 20.0%
!!! GTTTGTTTTATTATACGTTT+TGG + tig0021904:71825-71844 Msa1395090:intron 20.0%
!!! CTAAAACAGTTATGTTATTT+AGG + tig0021904:73110-73129 Msa1395090:intron 20.0%
!! GAAATTGAAGATTATTACAA+TGG - tig0021904:73170-73189 None:intergenic 20.0%
!!! TAGCTAATGTTTTGTAAATT+TGG + tig0021904:73769-73788 Msa1395090:intron 20.0%
!!! TTTTTTTTAGGAAGAATTGA+TGG - tig0021904:74009-74028 None:intergenic 20.0%
!! AACATGTAGTTGTTTATAAA+TGG - tig0021904:74178-74197 None:intergenic 20.0%
!!! ATATTTGCATAATCATTTTC+TGG + tig0021904:74241-74260 Msa1395090:intron 20.0%
!!! TATTTGCATAATCATTTTCT+GGG + tig0021904:74242-74261 Msa1395090:intron 20.0%
!! AGTGTTTCATTATTTAATCT+TGG + tig0021904:74333-74352 Msa1395090:intron 20.0%
!! TGTAAAATGGAATTCTTTAT+TGG - tig0021904:74488-74507 None:intergenic 20.0%
!!! TTTAATCTGCGTTTTTAAAT+AGG + tig0021904:75108-75127 Msa1395090:intron 20.0%
!!! TCACACATAGATTATTTTTT+TGG + tig0021904:75138-75157 Msa1395090:intron 20.0%
!! AATAGTTGATTAGGATAATT+TGG - tig0021904:75564-75583 None:intergenic 20.0%
!! AAATTATCCTAATCAACTAT+TGG + tig0021904:75563-75582 Msa1395090:intron 20.0%
!! TGTAACATAGTATTAATTGA+AGG + tig0021904:75626-75645 Msa1395090:intron 20.0%
!! GTAACATAGTATTAATTGAA+GGG + tig0021904:75627-75646 Msa1395090:intron 20.0%
!!! CATTTTGAAACAGATTTTTT+TGG + tig0021904:75701-75720 Msa1395090:intron 20.0%
!!! AGACTTGTTTAAAATGAATT+TGG + tig0021904:76169-76188 Msa1395090:intron 20.0%
!! TATCAGTATGTATATGTATA+TGG + tig0021904:76393-76412 Msa1395090:three_prime_UTR 20.0%
! ATGCGAGGAAAATAAAATAT+TGG + tig0021904:71439-71458 Msa1395090:five_prime_UTR 25.0%
! GATTGAATTGAATGAGAATT+GGG - tig0021904:71577-71596 None:intergenic 25.0%
! TGATTGAATTGAATGAGAAT+TGG - tig0021904:71578-71597 None:intergenic 25.0%
! AGGAAAAGAAATATGAAAGA+GGG - tig0021904:71616-71635 None:intergenic 25.0%
! AAGGAAAAGAAATATGAAAG+AGG - tig0021904:71617-71636 None:intergenic 25.0%
! TAAGAAGAAAACGTTGATAT+GGG - tig0021904:71644-71663 None:intergenic 25.0%
! TTAAGAAGAAAACGTTGATA+TGG - tig0021904:71645-71664 None:intergenic 25.0%
!!! TTTGTTCCATTTTTTTCTTC+TGG + tig0021904:71802-71821 Msa1395090:intron 25.0%
!!! TTGTTCCATTTTTTTCTTCT+GGG + tig0021904:71803-71822 Msa1395090:intron 25.0%
!!! TTTTGGGAAATTCAACATTT+TGG + tig0021904:71842-71861 Msa1395090:intron 25.0%
!! TTTGGGAAATTCAACATTTT+GGG + tig0021904:71843-71862 Msa1395090:intron 25.0%
! ATTAGGCAAAACTTCAAATT+CGG - tig0021904:71947-71966 None:intergenic 25.0%
! CAAATTCCAACTACTATATT+AGG - tig0021904:71964-71983 None:intergenic 25.0%
! CTAATATAGTAGTTGGAATT+TGG + tig0021904:71962-71981 Msa1395090:intron 25.0%
! AAAAGCAAATATACATTACC+TGG - tig0021904:72570-72589 None:intergenic 25.0%
!!! TGTATGTTTTGAACTGTATT+TGG + tig0021904:72821-72840 Msa1395090:intron 25.0%
! ATTATTACAATGGAACACTA+GGG - tig0021904:73160-73179 None:intergenic 25.0%
! TTGCTAAATAAGATTGCTAA+TGG + tig0021904:73199-73218 Msa1395090:intron 25.0%
!! AGTCACTGAATAATTTCTTT+TGG + tig0021904:73235-73254 Msa1395090:intron 25.0%
! TTGAACAAAGCAAGAAAATA+AGG - tig0021904:73311-73330 None:intergenic 25.0%
! GAGATTTATTTACGCTAAAA+AGG + tig0021904:73402-73421 Msa1395090:intron 25.0%
! TTTATTTACGCTAAAAAGGA+TGG + tig0021904:73406-73425 Msa1395090:intron 25.0%
! TTATTTACGCTAAAAAGGAT+GGG + tig0021904:73407-73426 Msa1395090:intron 25.0%
! TGAGAACATTAGAGTTATAA+TGG + tig0021904:73455-73474 Msa1395090:intron 25.0%
! AATTTGGAGACAAAATTTCT+TGG + tig0021904:73785-73804 Msa1395090:intron 25.0%
! CAATAAAAATAATGACAACC+TGG + tig0021904:73818-73837 Msa1395090:intron 25.0%
! TAAACAACTACATGTTAATC+TGG + tig0021904:74182-74201 Msa1395090:intron 25.0%
! AAACAACTACATGTTAATCT+GGG + tig0021904:74183-74202 Msa1395090:intron 25.0%
! GAGATTTGAAGAGTAATAAA+AGG - tig0021904:74386-74405 None:intergenic 25.0%
! GAATAAATCACACTGTAAAA+TGG - tig0021904:74501-74520 None:intergenic 25.0%
!! TCTACAGAATTTTGTTAATC+TGG + tig0021904:74701-74720 Msa1395090:intron 25.0%
!! CTACAGAATTTTGTTAATCT+GGG + tig0021904:74702-74721 Msa1395090:intron 25.0%
! TAGTCTTTAATTCTTGTATG+TGG - tig0021904:74798-74817 None:intergenic 25.0%
! CTTGAAATCTGATTAGAAAA+AGG + tig0021904:74855-74874 Msa1395090:intron 25.0%
!!! CCAATCTTATTCTTTTAAGT+TGG - tig0021904:75287-75306 None:intergenic 25.0%
! CCAACTTAAAAGAATAAGAT+TGG + tig0021904:75284-75303 Msa1395090:intron 25.0%
! AACATTGAACACATCTTAAA+GGG + tig0021904:75364-75383 Msa1395090:intron 25.0%
! AAACAAACCAATAGTTGATT+AGG - tig0021904:75573-75592 None:intergenic 25.0%
!!! TTCAAAATGAATGTCACTTT+CGG - tig0021904:75690-75709 None:intergenic 25.0%
! ATTCGTTTGAATGAAACTAT+TGG - tig0021904:76342-76361 None:intergenic 25.0%
! GTTATTTAGTAAGTTGTAGA+CGG + tig0021904:76467-76486 Msa1395090:three_prime_UTR 25.0%
ACACTCTTTCGAAATTTCTT+TGG - tig0021904:71390-71409 None:intergenic 30.0%
TGGGAATAATTTGATTGTGT+TGG - tig0021904:71558-71577 None:intergenic 30.0%
AAGAAGAAAACGTTGATATG+GGG - tig0021904:71643-71662 None:intergenic 30.0%
ACAAACCCAGAAGAAAAAAA+TGG - tig0021904:71811-71830 None:intergenic 30.0%
TTAGGCAAAACTTCAAATTC+GGG - tig0021904:71946-71965 None:intergenic 30.0%
! GTTTTGCCTAATATAGTAGT+TGG + tig0021904:71955-71974 Msa1395090:intron 30.0%
! ATTGAAACAAAAAGTGTGTC+AGG - tig0021904:72044-72063 None:intergenic 30.0%
!! TTTGGTTGGTTAAGGTTTTA+TGG + tig0021904:72146-72165 Msa1395090:intron 30.0%
GATGTACGAACATTACATAT+AGG - tig0021904:72356-72375 None:intergenic 30.0%
!! TGAGACTCTAAGTTGATATT+AGG + tig0021904:72410-72429 Msa1395090:intron 30.0%
GATATGTCTCAACTATATTG+TGG + tig0021904:72465-72484 Msa1395090:CDS 30.0%
GTGGTTTAGTATTAGTTAAG+CGG + tig0021904:72617-72636 Msa1395090:intron 30.0%
TGGTTTAGTATTAGTTAAGC+GGG + tig0021904:72618-72637 Msa1395090:intron 30.0%
TTGAACTGTATTTGGATAAG+AGG + tig0021904:72829-72848 Msa1395090:intron 30.0%
! ATGATGTTCTTTTGTATGCA+TGG + tig0021904:72929-72948 Msa1395090:intron 30.0%
!! TTACTTTGATTCCACTTTTG+AGG + tig0021904:72984-73003 Msa1395090:intron 30.0%
TGTGAGTGGTTTATTTATGT+TGG + tig0021904:73081-73100 Msa1395090:intron 30.0%
TGGTTTATTTATGTTGGTCA+CGG + tig0021904:73087-73106 Msa1395090:intron 30.0%
TTAGGTGTTCTTACTTGTAA+TGG + tig0021904:73128-73147 Msa1395090:intron 30.0%
GATTATTACAATGGAACACT+AGG - tig0021904:73161-73180 None:intergenic 30.0%
AATCAAAGAAGACTGAATCA+GGG - tig0021904:73272-73291 None:intergenic 30.0%
TTAGAGTTATAATGGCTAAG+TGG + tig0021904:73463-73482 Msa1395090:intron 30.0%
TTATAATGGCTAAGTGGTTA+TGG + tig0021904:73469-73488 Msa1395090:intron 30.0%
! CATTTTAAGCTTTGCAGAAA+AGG - tig0021904:73509-73528 None:intergenic 30.0%
! GCTAAAATGCTTTTCCAAAA+AGG + tig0021904:73610-73629 Msa1395090:intron 30.0%
! AAAATGCTTTTCCAAAAAGG+TGG + tig0021904:73613-73632 Msa1395090:intron 30.0%
!! TTTTTAGGAAGAATTGATGG+AGG - tig0021904:74006-74025 None:intergenic 30.0%
AAGTGAAGAATCAACACATT+CGG - tig0021904:74048-74067 None:intergenic 30.0%
! TACATGTTAATCTGGGATTA+AGG + tig0021904:74190-74209 Msa1395090:intron 30.0%
AAATAATGAAACACTGACCT+TGG - tig0021904:74328-74347 None:intergenic 30.0%
TCTTCAAATCTCTATTGTAG+AGG + tig0021904:74394-74413 Msa1395090:intron 30.0%
TAAAGACTAGTATGAGAGAA+AGG + tig0021904:74809-74828 Msa1395090:intron 30.0%
!! GATTCAGTTAATTTGTAGGA+AGG - tig0021904:74985-75004 None:intergenic 30.0%
TGGTTATAGTAGTAAAGGAA+GGG - tig0021904:75008-75027 None:intergenic 30.0%
TTAGGTGGTTATAGTAGTAA+AGG - tig0021904:75013-75032 None:intergenic 30.0%
AAGTAGCTACAGAATTAGTT+AGG - tig0021904:75031-75050 None:intergenic 30.0%
! TCTGCGTTTTTAAATAGGAA+AGG + tig0021904:75113-75132 Msa1395090:intron 30.0%
CAAGCTTATCAAGAATAAGT+AGG - tig0021904:75223-75242 None:intergenic 30.0%
AAGAATAAGATTGGAGTCTA+AGG + tig0021904:75293-75312 Msa1395090:intron 30.0%
CAACATTGAACACATCTTAA+AGG + tig0021904:75363-75382 Msa1395090:intron 30.0%
CAGTATGAAAAAATCAACTC+AGG - tig0021904:75771-75790 None:intergenic 30.0%
TGGTGATTAATAGCATAGAA+AGG + tig0021904:75921-75940 Msa1395090:intron 30.0%
ATATACTGTACCTTCTATCA+TGG - tig0021904:76252-76271 None:intergenic 30.0%
TATACACATGCAATATCTTC+TGG - tig0021904:76299-76318 None:intergenic 30.0%
GTATGTATATGTATATGGAG+AGG + tig0021904:76398-76417 Msa1395090:three_prime_UTR 30.0%
ATAAAATCACAGGCTTATCA+AGG - tig0021904:76513-76532 None:intergenic 30.0%
! GATTTTATCGATGATCTGTT+AGG + tig0021904:76525-76544 Msa1395090:three_prime_UTR 30.0%
TTGTATCGAATATCCATACA+CGG - tig0021904:76552-76571 None:intergenic 30.0%
GTGTGATATAATAACAGATC+TGG + tig0021904:76577-76596 Msa1395090:three_prime_UTR 30.0%
! TTTACGAGTGATTTGTGAAA+AGG + tig0021904:76656-76675 Msa1395090:three_prime_UTR 30.0%
! TTACGAGTGATTTGTGAAAA+GGG + tig0021904:76657-76676 Msa1395090:three_prime_UTR 30.0%
AAGATGAAGATGAAGTAGAG+AGG + tig0021904:71413-71432 Msa1395090:five_prime_UTR 35.0%
AAACGTTGATATGGGGATAA+AGG - tig0021904:71636-71655 None:intergenic 35.0%
AAAGGATCTAACAATACCTG+CGG - tig0021904:71757-71776 None:intergenic 35.0%
!! AATCTTGGTTTGGTTGGTTA+AGG + tig0021904:72138-72157 Msa1395090:intron 35.0%
!! TGGTTAAGGTTTTATGGTGA+TGG + tig0021904:72152-72171 Msa1395090:intron 35.0%
AACTTGTGTGTAATGGTTGT+AGG + tig0021904:72207-72226 Msa1395090:CDS 35.0%
TTTAATAACGAGAACAGCGT+TGG - tig0021904:72319-72338 None:intergenic 35.0%
ATGTCTCAACTATATTGTGG+AGG + tig0021904:72468-72487 Msa1395090:CDS 35.0%
ACATTGTTAATGTACACACG+CGG + tig0021904:72498-72517 Msa1395090:CDS 35.0%
AATATACATTACCTGGAGCA+AGG - tig0021904:72563-72582 None:intergenic 35.0%
TTTAGTATTAGTTAAGCGGG+TGG + tig0021904:72621-72640 Msa1395090:intron 35.0%
CATTGCTTGATCATGGAATA+TGG + tig0021904:72707-72726 Msa1395090:intron 35.0%
TGTATTTGGATAAGAGGCAA+TGG + tig0021904:72835-72854 Msa1395090:intron 35.0%
! TAGTGAAAGGTTTGGTTGTT+TGG + tig0021904:72866-72885 Msa1395090:intron 35.0%
CATCATAATCTACAAACTGC+AGG - tig0021904:72915-72934 None:intergenic 35.0%
TTTATGAGCCTTGGTAAACA+CGG + tig0021904:73021-73040 Msa1395090:intron 35.0%
CACAACATCAACTTGATCAT+TGG - tig0021904:73058-73077 None:intergenic 35.0%
GAATCAAAGAAGACTGAATC+AGG - tig0021904:73273-73292 None:intergenic 35.0%
TAAGCTTTGCAGAAAAGGTT+AGG - tig0021904:73504-73523 None:intergenic 35.0%
TGTGAAAGGTGAATGTATGT+TGG + tig0021904:73654-73673 Msa1395090:intron 35.0%
AATAGAATCAGTTCCTTGAG+TGG - tig0021904:73969-73988 None:intergenic 35.0%
!! CATCTCTTTGAAATGAAGTC+TGG + tig0021904:74080-74099 Msa1395090:intron 35.0%
TATTGCTTGCATTTAGTCCA+AGG + tig0021904:74308-74327 Msa1395090:intron 35.0%
ATAGTACTCATCAAGACGAA+CGG - tig0021904:74362-74381 None:intergenic 35.0%
ACAACACTCATGTATCCTTA+TGG + tig0021904:74618-74637 Msa1395090:CDS 35.0%
TGATTAGAAAAAGGATCCCA+AGG + tig0021904:74864-74883 Msa1395090:intron 35.0%
GATTAGAAAAAGGATCCCAA+GGG + tig0021904:74865-74884 Msa1395090:intron 35.0%
CAGCACCTCAGTTATAAAAA+AGG - tig0021904:74914-74933 None:intergenic 35.0%
!! TTTCTGAACTGTTAGCTTTG+GGG - tig0021904:74944-74963 None:intergenic 35.0%
!! CTTTCTGAACTGTTAGCTTT+GGG - tig0021904:74945-74964 None:intergenic 35.0%
! TCTTTCTGAACTGTTAGCTT+TGG - tig0021904:74946-74965 None:intergenic 35.0%
!! TCAGTTAATTTGTAGGAAGG+CGG - tig0021904:74982-75001 None:intergenic 35.0%
!! AGGGGATTCAGTTAATTTGT+AGG - tig0021904:74989-75008 None:intergenic 35.0%
GGTTATAGTAGTAAAGGAAG+GGG - tig0021904:75007-75026 None:intergenic 35.0%
GTGGTTATAGTAGTAAAGGA+AGG - tig0021904:75009-75028 None:intergenic 35.0%
TAGCTACAGAATTAGTTAGG+TGG - tig0021904:75028-75047 None:intergenic 35.0%
GGAGATACATTTAAGTCTTC+TGG + tig0021904:75159-75178 Msa1395090:intron 35.0%
ATAACAGGCATGTGATAACT+TGG - tig0021904:75251-75270 None:intergenic 35.0%
ACATGCCTGTTATCAGATAT+TGG + tig0021904:75258-75277 Msa1395090:intron 35.0%
CATGCCTGTTATCAGATATT+GGG + tig0021904:75259-75278 Msa1395090:intron 35.0%
ATGAAATTTCATTCCCGTTG+AGG + tig0021904:75412-75431 Msa1395090:intron 35.0%
TACAACAGACAAAAGCTCAA+AGG - tig0021904:75438-75457 None:intergenic 35.0%
! GAGCTTTTGTCTGTTGTAAA+TGG + tig0021904:75440-75459 Msa1395090:intron 35.0%
!!! GACACTCATTTTGAAATGGA+GGG - tig0021904:75477-75496 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+TGG - tig0021904:75727-75746 None:intergenic 35.0%
TTCCTTAATCTGTGTGCAAT+TGG - tig0021904:75507-75526 None:intergenic 35.0%
ATTGCACACAGATTAAGGAA+TGG + tig0021904:75507-75526 Msa1395090:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + tig0021904:75727-75746 Msa1395090:intron 35.0%
ATTGGACATCTACAAAAGAC+AGG - tig0021904:75797-75816 None:intergenic 35.0%
! TGTCTTTTGTAGATGTCCAA+TGG + tig0021904:75796-75815 Msa1395090:intron 35.0%
! TTTTGTAGATGTCCAATGGA+AGG + tig0021904:75800-75819 Msa1395090:intron 35.0%
AACGTTACCTTCTACTTCAA+CGG + tig0021904:75867-75886 Msa1395090:intron 35.0%
AAACATACCGTTGAAGTAGA+AGG - tig0021904:75877-75896 None:intergenic 35.0%
TAGCATAGAAAGGATGATGT+TGG + tig0021904:75931-75950 Msa1395090:intron 35.0%
!! CAATGTCTGTTGATTCAAGT+GGG + tig0021904:76055-76074 Msa1395090:CDS 35.0%
!! TGTTGATTCAAGTGGGAAAT+TGG + tig0021904:76062-76081 Msa1395090:CDS 35.0%
AAATGAATTTGGCATGTCAC+AGG + tig0021904:76180-76199 Msa1395090:intron 35.0%
AATAATGCAGCCATGATAGA+AGG + tig0021904:76239-76258 Msa1395090:exon 35.0%
CGTTTGAATGAAACTATTGG+AGG - tig0021904:76339-76358 None:intergenic 35.0%
!!! ATCCTTCCTTTTTCGATGTA+AGG + tig0021904:76360-76379 Msa1395090:three_prime_UTR 35.0%
!!! TCCTTCCTTTTTCGATGTAA+GGG + tig0021904:76361-76380 Msa1395090:three_prime_UTR 35.0%
TCTAACCCTTACATCGAAAA+AGG - tig0021904:76369-76388 None:intergenic 35.0%
CAGATCATCGATAAAATCAC+AGG - tig0021904:76523-76542 None:intergenic 35.0%
TTCGTTACTGAATGTTGTAC+AGG + tig0021904:76611-76630 Msa1395090:three_prime_UTR 35.0%
TGAAAAGGGTGATAATATCC+AGG + tig0021904:76671-76690 Msa1395090:three_prime_UTR 35.0%
AAGAAGAAGAAGAAGTCGCA+AGG + tig0021904:71468-71487 Msa1395090:five_prime_UTR 40.0%
TGTGTGTGAGAATCTTGGTT+TGG + tig0021904:72128-72147 Msa1395090:intron 40.0%
!! TGTGAGAATCTTGGTTTGGT+TGG + tig0021904:72132-72151 Msa1395090:intron 40.0%
CAGAGTCAACTTGTGTGTAA+TGG + tig0021904:72200-72219 Msa1395090:CDS 40.0%
GCACAATGCACAACAAACAT+TGG - tig0021904:72261-72280 None:intergenic 40.0%
AACTATATTGTGGAGGCTGT+AGG + tig0021904:72475-72494 Msa1395090:CDS 40.0%
TTTGCTGCATTGCTTGATCA+TGG + tig0021904:72700-72719 Msa1395090:intron 40.0%
TAATCCGTACACGAGGATTT+CGG - tig0021904:72751-72770 None:intergenic 40.0%
CAGTTCAAAACATACACTCG+AGG - tig0021904:72817-72836 None:intergenic 40.0%
TTTGGATAAGAGGCAATGGA+AGG + tig0021904:72839-72858 Msa1395090:intron 40.0%
TTGGATAAGAGGCAATGGAA+GGG + tig0021904:72840-72859 Msa1395090:intron 40.0%
ACGACAAATGACCTCAAAAG+TGG - tig0021904:72998-73017 None:intergenic 40.0%
!! TGTCGTGTTTTTATGAGCCT+TGG + tig0021904:73012-73031 Msa1395090:intron 40.0%
! TTGATGTTGTGACTTGTGAG+TGG + tig0021904:73067-73086 Msa1395090:intron 40.0%
! TCTTATTTAGCAACAGCGTC+TGG - tig0021904:73192-73211 None:intergenic 40.0%
! TATACGGGATTCCTTTTGCA+TGG + tig0021904:73360-73379 Msa1395090:intron 40.0%
! ATACGGGATTCCTTTTGCAT+GGG + tig0021904:73361-73380 Msa1395090:intron 40.0%
GAAGCTATTTACTGCACGAT+TGG + tig0021904:73528-73547 Msa1395090:intron 40.0%
ATTTACTGCACGATTGGTGT+TGG + tig0021904:73534-73553 Msa1395090:intron 40.0%
! TTTACTGCACGATTGGTGTT+GGG + tig0021904:73535-73554 Msa1395090:intron 40.0%
TCCAATAACTGGAATGAGGT+TGG + tig0021904:73582-73601 Msa1395090:intron 40.0%
CCAATAACTGGAATGAGGTT+GGG + tig0021904:73583-73602 Msa1395090:intron 40.0%
CATTCACCTTTCACAAGCAT+AGG - tig0021904:73649-73668 None:intergenic 40.0%
! AGACGGGATTTTATAGTACC+AGG - tig0021904:73839-73858 None:intergenic 40.0%
AAAATCCCGTCTTATGTTCC+CGG + tig0021904:73847-73866 Msa1395090:intron 40.0%
CATTTCAAAGAGATGACGTG+AGG - tig0021904:74075-74094 None:intergenic 40.0%
TTTGCACACTACGAGATGTT+TGG + tig0021904:74438-74457 Msa1395090:intron 40.0%
! AAGGATACATGAGTGTTGTC+CGG - tig0021904:74617-74636 None:intergenic 40.0%
CAAACAGCACATTTGACTGA+AGG - tig0021904:74648-74667 None:intergenic 40.0%
!!! GGCAGCCTTTTTTATAACTG+AGG + tig0021904:74906-74925 Msa1395090:intron 40.0%
!! TTAATTTGTAGGAAGGCGGA+AGG - tig0021904:74978-74997 None:intergenic 40.0%
GGATCCCAATATCTGATAAC+AGG - tig0021904:75266-75285 None:intergenic 40.0%
TTTCCCTAGGGCATATAAGT+CGG - tig0021904:75328-75347 None:intergenic 40.0%
TATATGCCCTAGGGAAACTT+TGG + tig0021904:75331-75350 Msa1395090:intron 40.0%
GAGAATCCAAAGTTTCCCTA+GGG - tig0021904:75340-75359 None:intergenic 40.0%
TGAGAATCCAAAGTTTCCCT+AGG - tig0021904:75341-75360 None:intergenic 40.0%
!!! CGACACTCATTTTGAAATGG+AGG - tig0021904:75478-75497 None:intergenic 40.0%
AGCCAATTGCACACAGATTA+AGG + tig0021904:75502-75521 Msa1395090:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + tig0021904:75731-75750 Msa1395090:intron 40.0%
! GATTTTCTACCACCACTGTT+TGG - tig0021904:76035-76054 None:intergenic 40.0%
CCACTTGAATCAACAGACAT+TGG - tig0021904:76057-76076 None:intergenic 40.0%
!! CCAATGTCTGTTGATTCAAG+TGG + tig0021904:76054-76073 Msa1395090:CDS 40.0%
ACCCTTACATCGAAAAAGGA+AGG - tig0021904:76365-76384 None:intergenic 40.0%
AGAAGAAGAAGTCGCAAGGA+AGG + tig0021904:71472-71491 Msa1395090:five_prime_UTR 45.0%
AAGTCGCAAGGAAGGAAGAA+AGG + tig0021904:71480-71499 Msa1395090:five_prime_UTR 45.0%
AGTCGCAAGGAAGGAAGAAA+GGG + tig0021904:71481-71500 Msa1395090:five_prime_UTR 45.0%
GTGTGTGTGTGTGAGAATCT+TGG + tig0021904:72123-72142 Msa1395090:intron 45.0%
!! AGCATGTTGCTTTACCCTAG+AGG + tig0021904:72230-72249 Msa1395090:CDS 45.0%
!! GCATGTTGCTTTACCCTAGA+GGG + tig0021904:72231-72250 Msa1395090:CDS 45.0%
!! CATGTTGCTTTACCCTAGAG+GGG + tig0021904:72232-72251 Msa1395090:CDS 45.0%
! AAACATTGGTTGCCCCTCTA+GGG - tig0021904:72247-72266 None:intergenic 45.0%
CATACTGTAAACCTTGCTCC+AGG + tig0021904:72549-72568 Msa1395090:CDS 45.0%
GCTTGACAGATGAAGCTTAG+TGG + tig0021904:72598-72617 Msa1395090:intron 45.0%
TAGTTAAGCGGGTGGCATAT+TGG + tig0021904:72629-72648 Msa1395090:intron 45.0%
! GATTACCAGGGGGTACATTA+AGG + tig0021904:72766-72785 Msa1395090:intron 45.0%
AATGACCTTAATGTACCCCC+TGG - tig0021904:72774-72793 None:intergenic 45.0%
TGGATAAGAGGCAATGGAAG+GGG + tig0021904:72841-72860 Msa1395090:intron 45.0%
! AATGGAAGGGGGTTAGTGAA+AGG + tig0021904:72853-72872 Msa1395090:intron 45.0%
! AAGGGGGTTAGTGAAAGGTT+TGG + tig0021904:72858-72877 Msa1395090:intron 45.0%
ACAATGGAACACTAGGGAAG+AGG - tig0021904:73154-73173 None:intergenic 45.0%
! TACGGGATTCCTTTTGCATG+GGG + tig0021904:73362-73381 Msa1395090:intron 45.0%
AAAGGATGGGTGCTTAGTCT+TGG + tig0021904:73420-73439 Msa1395090:intron 45.0%
!! GGTGCTTAGTCTTGGTAAGT+TGG + tig0021904:73428-73447 Msa1395090:intron 45.0%
TTCCAGTTATTGGAGCCAGT+GGG - tig0021904:73576-73595 None:intergenic 45.0%
ATTCCAGTTATTGGAGCCAG+TGG - tig0021904:73577-73596 None:intergenic 45.0%
TGGCTCCAATAACTGGAATG+AGG + tig0021904:73578-73597 Msa1395090:intron 45.0%
CCCAACCTCATTCCAGTTAT+TGG - tig0021904:73586-73605 None:intergenic 45.0%
GGTGAATGTATGTTGGAGAG+TGG + tig0021904:73661-73680 Msa1395090:intron 45.0%
AAATCCCGTCTTATGTTCCC+GGG + tig0021904:73848-73867 Msa1395090:intron 45.0%
ATCAGATTCCACACCACTCA+AGG + tig0021904:73953-73972 Msa1395090:intron 45.0%
AATCAGTTCCTTGAGTGGTG+TGG - tig0021904:73964-73983 None:intergenic 45.0%
TTGACTGAAGGAGCTCCATA+AGG - tig0021904:74636-74655 None:intergenic 45.0%
TGTTGAAGGGGAAAACCCTT+GGG - tig0021904:74883-74902 None:intergenic 45.0%
TTGTTGAAGGGGAAAACCCT+TGG - tig0021904:74884-74903 None:intergenic 45.0%
! AGGGTTTTCCCCTTCAACAA+AGG + tig0021904:74884-74903 Msa1395090:intron 45.0%
! GGGTTTTCCCCTTCAACAAA+GGG + tig0021904:74885-74904 Msa1395090:intron 45.0%
AAAGGCTGCCCTTTGTTGAA+GGG - tig0021904:74896-74915 None:intergenic 45.0%
AAAAGGCTGCCCTTTGTTGA+AGG - tig0021904:74897-74916 None:intergenic 45.0%
AAACCCGACTTATATGCCCT+AGG + tig0021904:75321-75340 Msa1395090:intron 45.0%
AACCCGACTTATATGCCCTA+GGG + tig0021904:75322-75341 Msa1395090:intron 45.0%
TTCCCTAGGGCATATAAGTC+GGG - tig0021904:75327-75346 None:intergenic 45.0%
AAAAGCTCAAAGGCCTCAAC+GGG - tig0021904:75428-75447 None:intergenic 45.0%
CAAAAGCTCAAAGGCCTCAA+CGG - tig0021904:75429-75448 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + tig0021904:75730-75749 Msa1395090:intron 45.0%
AGGAATTGGAAGCCTTCCAT+TGG - tig0021904:75815-75834 None:intergenic 45.0%
AATGGAAGGCTTCCAATTCC+TGG + tig0021904:75814-75833 Msa1395090:intron 45.0%
TGAGGTCTATGACCAGGAAT+TGG - tig0021904:75829-75848 None:intergenic 45.0%
ATTCCTGGTCATAGACCTCA+CGG + tig0021904:75829-75848 Msa1395090:intron 45.0%
!! ACTGTTTGGCTCTGAGATTG+GGG - tig0021904:76021-76040 None:intergenic 45.0%
!! CACTGTTTGGCTCTGAGATT+GGG - tig0021904:76022-76041 None:intergenic 45.0%
AGAGAAGCAGTCAAATGCAG+TGG - tig0021904:76129-76148 None:intergenic 45.0%
CAGGTGAGCAATGTTGTTGT+TGG + tig0021904:76199-76218 Msa1395090:intron 45.0%
GAGAGGACGAGTTGTGAAAA+GGG + tig0021904:76415-76434 Msa1395090:three_prime_UTR 45.0%
TGTGAAAAGGGCTGTGTGAT+TGG + tig0021904:76427-76446 Msa1395090:three_prime_UTR 45.0%
TGATCTGTTAGGACCGTGTA+TGG + tig0021904:76536-76555 Msa1395090:three_prime_UTR 45.0%
TGATAATATCCAGGACCAGG+AGG + tig0021904:76680-76699 Msa1395090:three_prime_UTR 45.0%
!! TTAAAATAATCAAAAAAAAA+AGG + tig0021904:71661-71680 Msa1395090:five_prime_UTR 5.0%
!!! ATAAAATTTAAAATGTTATA+CGG + tig0021904:73344-73363 Msa1395090:intron 5.0%
GAAGTAGAGAGGAAGATGCG+AGG + tig0021904:71424-71443 Msa1395090:five_prime_UTR 50.0%
GAATCGCTTGTCGCAGAACA+CGG + tig0021904:71723-71742 Msa1395090:five_prime_UTR 50.0%
! CAAACATTGGTTGCCCCTCT+AGG - tig0021904:72248-72267 None:intergenic 50.0%
ATTACCTCTGTTCCTCCACC+TGG + tig0021904:72287-72306 Msa1395090:CDS 50.0%
! TACCGTACTGATGTTCCTGC+AGG + tig0021904:72438-72457 Msa1395090:intron 50.0%
! ACCGTACTGATGTTCCTGCA+GGG + tig0021904:72439-72458 Msa1395090:intron 50.0%
TCCCTGCAGGAACATCAGTA+CGG - tig0021904:72443-72462 None:intergenic 50.0%
TACTGATGTTCCTGCAGGGA+TGG + tig0021904:72443-72462 Msa1395090:intron 50.0%
TGAGACATATCCATCCCTGC+AGG - tig0021904:72456-72475 None:intergenic 50.0%
CGTTCCGAAATCCTCGTGTA+CGG + tig0021904:72744-72763 Msa1395090:intron 50.0%
! ATCCTCGTGTACGGATTACC+AGG + tig0021904:72753-72772 Msa1395090:intron 50.0%
! TCCTCGTGTACGGATTACCA+GGG + tig0021904:72754-72773 Msa1395090:intron 50.0%
GGATAAGAGGCAATGGAAGG+GGG + tig0021904:72842-72861 Msa1395090:intron 50.0%
GAGCCTTGGTAAACACGGTT+TGG + tig0021904:73026-73045 Msa1395090:intron 50.0%
CAGCCAAACCGTGTTTACCA+AGG - tig0021904:73032-73051 None:intergenic 50.0%
! ACGGGATTCCTTTTGCATGG+GGG + tig0021904:73363-73382 Msa1395090:intron 50.0%
CCAAATGACCCCCATGCAAA+AGG - tig0021904:73374-73393 None:intergenic 50.0%
! CCTTTTGCATGGGGGTCATT+TGG + tig0021904:73371-73390 Msa1395090:intron 50.0%
ATGGGGGTCATTTGGCTACT+CGG + tig0021904:73379-73398 Msa1395090:intron 50.0%
!! AACCCACTGGCTCCAATAAC+TGG + tig0021904:73571-73590 Msa1395090:intron 50.0%
TTTCCAAAAAGGTGGCAGCC+CGG + tig0021904:73621-73640 Msa1395090:intron 50.0%
CTTTCACAAGCATAGGAGCC+GGG - tig0021904:73642-73661 None:intergenic 50.0%
CCTTTCACAAGCATAGGAGC+CGG - tig0021904:73643-73662 None:intergenic 50.0%
TCTTCCCGGGAACATAAGAC+GGG - tig0021904:73855-73874 None:intergenic 50.0%
CTCTTCCCGGGAACATAAGA+CGG - tig0021904:73856-73875 None:intergenic 50.0%
AAATTTGTCCGCCTCTTCCC+GGG - tig0021904:73868-73887 None:intergenic 50.0%
CAAATTTGTCCGCCTCTTCC+CGG - tig0021904:73869-73888 None:intergenic 50.0%
AAGGCTGCCCTTTGTTGAAG+GGG - tig0021904:74895-74914 None:intergenic 50.0%
TTTGTAGGAAGGCGGAAGGA+GGG - tig0021904:74974-74993 None:intergenic 50.0%
ATTTGTAGGAAGGCGGAAGG+AGG - tig0021904:74975-74994 None:intergenic 50.0%
TAGGACGACGTAGACACGAA+TGG - tig0021904:75204-75223 None:intergenic 50.0%
GGCATATAAGTCGGGTTTGC+AGG - tig0021904:75319-75338 None:intergenic 50.0%
TTCCTGGTCATAGACCTCAC+GGG + tig0021904:75830-75849 Msa1395090:intron 50.0%
AGAAGGTAACGTTCCCGAGT+CGG - tig0021904:75860-75879 None:intergenic 50.0%
!! GAGATTGGGGCATTGACTGT+AGG - tig0021904:76008-76027 None:intergenic 50.0%
!! CCACTGTTTGGCTCTGAGAT+TGG - tig0021904:76023-76042 None:intergenic 50.0%
CCAATCTCAGAGCCAAACAG+TGG + tig0021904:76020-76039 Msa1395090:CDS 50.0%
ATCTCAGAGCCAAACAGTGG+TGG + tig0021904:76023-76042 Msa1395090:CDS 50.0%
GGAGAGGACGAGTTGTGAAA+AGG + tig0021904:76414-76433 Msa1395090:three_prime_UTR 50.0%
GGGTGATAATATCCAGGACC+AGG + tig0021904:76677-76696 Msa1395090:three_prime_UTR 50.0%
CTAACAATACCTGCGGCACC+AGG - tig0021904:71750-71769 None:intergenic 55.0%
ACACACACACACACACACGC+AGG - tig0021904:72113-72132 None:intergenic 55.0%
CTTACCAGGTGGAGGAACAG+AGG - tig0021904:72294-72313 None:intergenic 55.0%
! GAACAGCGTTGGAGCTTACC+AGG - tig0021904:72308-72327 None:intergenic 55.0%
! CCTCGTGTACGGATTACCAG+GGG + tig0021904:72755-72774 Msa1395090:intron 55.0%
! CTCGTGTACGGATTACCAGG+GGG + tig0021904:72756-72775 Msa1395090:intron 55.0%
! GGTTTGGTTGTTTGGCCCGA+CGG + tig0021904:72874-72893 Msa1395090:intron 55.0%
GTTTGGTTGTTTGGCCCGAC+GGG + tig0021904:72875-72894 Msa1395090:intron 55.0%
TGAGAAACCACCATCCCGTC+GGG - tig0021904:72892-72911 None:intergenic 55.0%
GTGAGAAACCACCATCCCGT+CGG - tig0021904:72893-72912 None:intergenic 55.0%
TGGGGGTCATTTGGCTACTC+GGG + tig0021904:73380-73399 Msa1395090:intron 55.0%
CCGGCTCCTATGCTTGTGAA+AGG + tig0021904:73640-73659 Msa1395090:intron 55.0%
CGTCTTATGTTCCCGGGAAG+AGG + tig0021904:73854-73873 Msa1395090:intron 55.0%
CTTATGTTCCCGGGAAGAGG+CGG + tig0021904:73857-73876 Msa1395090:intron 55.0%
CAAGTAGCCCATGTCCCTTG+CGG + tig0021904:74585-74604 Msa1395090:CDS 55.0%
AAGTAGCCCATGTCCCTTGC+GGG + tig0021904:74586-74605 Msa1395090:CDS 55.0%
TTGTAGGAAGGCGGAAGGAG+GGG - tig0021904:74973-74992 None:intergenic 55.0%
CATTCAAAGCCTCCTGGTCC+TGG - tig0021904:76692-76711 None:intergenic 55.0%
CTTGTCGCAGAACACGGTCC+TGG + tig0021904:71729-71748 Msa1395090:five_prime_UTR 60.0%
CGTTGGAGCTTACCAGGTGG+AGG - tig0021904:72302-72321 None:intergenic 60.0%
! CAGCGTTGGAGCTTACCAGG+TGG - tig0021904:72305-72324 None:intergenic 60.0%
CCCCTGGTAATCCGTACACG+AGG - tig0021904:72758-72777 None:intergenic 60.0%
! TTGGAGCCAGTGGGTTCGCA+GGG - tig0021904:73567-73586 None:intergenic 60.0%
! ATTGGAGCCAGTGGGTTCGC+AGG - tig0021904:73568-73587 None:intergenic 60.0%
GCAGTTCCCGCAAGGGACAT+GGG - tig0021904:74595-74614 None:intergenic 60.0%
ATGTCCCTTGCGGGAACTGC+CGG + tig0021904:74595-74614 Msa1395090:CDS 60.0%
TTGTCCGGCAGTTCCCGCAA+GGG - tig0021904:74602-74621 None:intergenic 60.0%
TGTAGGAAGGCGGAAGGAGG+GGG - tig0021904:74972-74991 None:intergenic 60.0%
GTCCCGTGAGGTCTATGACC+AGG - tig0021904:75835-75854 None:intergenic 60.0%
ACCTCACGGGACAACCGACT+CGG + tig0021904:75843-75862 Msa1395090:intron 60.0%
GGTTGTTTGGCCCGACGGGA+TGG + tig0021904:72879-72898 Msa1395090:intron 65.0%
TGTTTGGCCCGACGGGATGG+TGG + tig0021904:72882-72901 Msa1395090:intron 65.0%
AGCAAGCCCTGCGAACCCAC+TGG + tig0021904:73558-73577 Msa1395090:intron 65.0%
! GAGCCGGGCTGCCACCTTTT+TGG - tig0021904:73627-73646 None:intergenic 65.0%
GGCAGTTCCCGCAAGGGACA+TGG - tig0021904:74596-74615 None:intergenic 65.0%
GTTGTCCGGCAGTTCCCGCA+AGG - tig0021904:74603-74622 None:intergenic 65.0%
! CCTCACGGGACAACCGACTC+GGG + tig0021904:75844-75863 Msa1395090:intron 65.0%
!! GAACACGGTCCTGGTGCCGC+AGG + tig0021904:71738-71757 Msa1395090:five_prime_UTR 70.0%
CCCGAGTCGGTTGTCCCGTG+AGG - tig0021904:75847-75866 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0021904 gene 71311 76714 71311 ID=Msa1395090;Name=Msa1395090
tig0021904 mRNA 71311 76714 71311 ID=Msa1395090-mRNA-1;Parent=Msa1395090;Name=Msa1395090-mRNA-1;_AED=0.09;_eAED=0.14;_QI=451|0.8|0.83|1|1|1|6|471|175
tig0021904 exon 71311 71759 71311 ID=Msa1395090-mRNA-1:exon:14680;Parent=Msa1395090-mRNA-1
tig0021904 exon 72195 72308 72195 ID=Msa1395090-mRNA-1:exon:14681;Parent=Msa1395090-mRNA-1
tig0021904 exon 72460 72570 72460 ID=Msa1395090-mRNA-1:exon:14682;Parent=Msa1395090-mRNA-1
tig0021904 exon 74577 74689 74577 ID=Msa1395090-mRNA-1:exon:14683;Parent=Msa1395090-mRNA-1
tig0021904 exon 75934 76083 75934 ID=Msa1395090-mRNA-1:exon:14684;Parent=Msa1395090-mRNA-1
tig0021904 exon 76202 76714 76202 ID=Msa1395090-mRNA-1:exon:14685;Parent=Msa1395090-mRNA-1
tig0021904 five_prime_UTR 71311 71759 71311 ID=Msa1395090-mRNA-1:five_prime_utr;Parent=Msa1395090-mRNA-1
tig0021904 five_prime_UTR 72195 72196 72195 ID=Msa1395090-mRNA-1:five_prime_utr;Parent=Msa1395090-mRNA-1
tig0021904 CDS 72197 72308 72197 ID=Msa1395090-mRNA-1:cds;Parent=Msa1395090-mRNA-1
tig0021904 CDS 72460 72570 72460 ID=Msa1395090-mRNA-1:cds;Parent=Msa1395090-mRNA-1
tig0021904 CDS 74577 74689 74577 ID=Msa1395090-mRNA-1:cds;Parent=Msa1395090-mRNA-1
tig0021904 CDS 75934 76083 75934 ID=Msa1395090-mRNA-1:cds;Parent=Msa1395090-mRNA-1
tig0021904 CDS 76202 76243 76202 ID=Msa1395090-mRNA-1:cds;Parent=Msa1395090-mRNA-1
tig0021904 three_prime_UTR 76244 76714 76244 ID=Msa1395090-mRNA-1:three_prime_utr;Parent=Msa1395090-mRNA-1
Gene Sequence

>Msa1395090

ATGCAGAGTCAACTTGTGTGTAATGGTTGTAGGAGCATGTTGCTTTACCCTAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCACCTGGGATGGATATGTCTCAACTATATTGTGGAGGCTGTAGGACATTGTTAATGTACACACGCGGAGCTACAAGTGTCAGATGTTCTTGCTGTCATACTGTAAACCTTGCTCCAGTATCTAATCAAGTAGCCCATGTCCCTTGCGGGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCTTCAGTCAAATGTGCTGTTTGTCACTATGTTACGAATATCAATCATAGAAAGGATGATGTTGGTGTTTTCTGTTCTGATAATCTAATGAATATCAATGTGATTCTGTTTTACTACCTACAGTCAATGCCCCAATCTCAGAGCCAAACAGTGGTGGTAGAAAATCCAATGTCTGTTGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGTGTTACAACAGATAAGAAATAA
Protein sequence

>Msa1395090

MQSQLVCNGCRSMLLYPRGATNVCCALCNTITSVPPPGMDMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPVSNQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYVTNINHRKDDVGVFCSDNLMNINVILFYYLQSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK*