AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1357760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1357760 MtrunA17_Chr7g0268531 89.498 438 6 2 1 401 1 435 0.0 743
Msa1357760 MtrunA17_Chr1g0196181 57.556 450 93 11 40 401 44 483 4.90e-156 449
Msa1357760 MtrunA17_Chr8g0346171 58.608 273 68 4 35 270 87 351 7.43e-102 310
Msa1357760 MtrunA17_Chr7g0266501 53.763 279 87 2 30 271 69 342 1.57e-93 289
Msa1357760 MtrunA17_Chr4g0026251 53.383 266 78 2 28 256 66 322 1.91e-91 280
Msa1357760 MtrunA17_Chr2g0321541 52.190 274 89 2 35 271 50 318 1.33e-87 273
Msa1357760 MtrunA17_Chr7g0250591 56.796 206 45 3 102 270 14 212 7.15e-62 199
Msa1357760 MtrunA17_Chr5g0426461 50.980 153 42 1 102 221 16 168 9.69e-44 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1357760 AT4G03100.1 58.028 355 85 5 30 321 39 392 4.38e-128 376
Msa1357760 AT2G46710.1 57.586 290 78 6 35 283 77 362 9.11e-103 312
Msa1357760 AT5G22400.1 54.577 284 86 3 29 275 87 364 2.45e-98 301
Msa1357760 AT3G11490.1 51.178 297 98 4 35 290 69 359 6.07e-90 278
Msa1357760 AT1G08340.1 51.837 245 81 1 63 270 1 245 2.74e-81 253

Find 85 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAATAGTTTAGTATATT+TGG 0.064059 tig0016171:-21158 None:intergenic
TTGAATCAGCTTTGCTTAAT+TGG 0.091752 tig0016171:+19813 Msa1357760:CDS
TCCAAATATACTAAACTATT+TGG 0.186491 tig0016171:+21157 Msa1357760:three_prime_UTR
TAATTGGGCTGTTGATCTTA+TGG 0.232844 tig0016171:+19829 Msa1357760:CDS
GTGCTTGTTAATCTATTCTT+AGG 0.260426 tig0016171:+21216 Msa1357760:three_prime_UTR
AAGCATACCTGAGTCATATT+TGG 0.279990 tig0016171:-19917 None:intergenic
TGTCGAGCCGTTTCTATAAC+TGG 0.304547 tig0016171:-20842 None:intergenic
TTTCGTATAAATCCAGAAAA+TGG 0.307758 tig0016171:+19618 Msa1357760:CDS
GTGTCTTTACTTTCTATTGA+TGG 0.311575 tig0016171:-20898 None:intergenic
TGAAGAGGATTATAACAAAA+TGG 0.341839 tig0016171:+19865 Msa1357760:CDS
AGAATGCTTCTTAGAACAAT+TGG 0.343443 tig0016171:+20720 Msa1357760:CDS
CTTGTTTATACTTGATTAGT+AGG 0.352680 tig0016171:+21065 Msa1357760:three_prime_UTR
CTTCCTTCAGGAGTGTTAGA+TGG 0.358229 tig0016171:+19716 Msa1357760:intron
AATTGCAGTGTTAGTGTGTT+TGG 0.363248 tig0016171:+19375 Msa1357760:intron
CTAACATGCTTAACATTTGT+AGG 0.376675 tig0016171:-18520 None:intergenic
TGAATCAGCTTTGCTTAATT+GGG 0.382771 tig0016171:+19814 Msa1357760:CDS
AATTTGAGCTTCTTGTTGTC+AGG 0.386910 tig0016171:+20992 Msa1357760:three_prime_UTR
ATCTACCATCTCCACATCAT+TGG 0.394673 tig0016171:-20920 None:intergenic
GAAGAGGAAGCAGAGACGGC+GGG 0.403827 tig0016171:+18377 Msa1357760:CDS
CAGACAGGAATCCTCAGTTT+TGG 0.410752 tig0016171:-20815 None:intergenic
TTAAGCAAAGCTGATTCAAC+TGG 0.417940 tig0016171:-19809 None:intergenic
TTTGGACACATAACATAATC+AGG 0.421537 tig0016171:-21140 None:intergenic
GTGAGTGGTGGATGCGGTGG+TGG 0.428914 tig0016171:+18337 Msa1357760:CDS
TCTTCTTGCAAATGCTCTGC+AGG 0.433059 tig0016171:-20778 None:intergenic
ATTAGCTACGAATTTCATCT+AGG 0.433903 tig0016171:+21184 Msa1357760:three_prime_UTR
CAATGTTCTTATGATTCAAA+AGG 0.438953 tig0016171:+19417 Msa1357760:CDS
CTGCATTAGTAACAGAATAG+TGG 0.443345 tig0016171:-19451 None:intergenic
CTGCTGTTGCTGTTTCTTCG+CGG 0.447979 tig0016171:-20540 None:intergenic
AGAAGAGGAAGCAGAGACGG+CGG 0.455159 tig0016171:+18376 Msa1357760:CDS
CACTATTCTGTTACTAATGC+AGG 0.459853 tig0016171:+19452 Msa1357760:CDS
GTTCATCATCCAATGGAGAT+TGG 0.485515 tig0016171:+18493 Msa1357760:CDS
AGGTACCTAGCACTAGGAAC+AGG 0.489014 tig0016171:-18613 None:intergenic
ATGCAGCTTCTTCAATGTTG+TGG 0.493347 tig0016171:-20678 None:intergenic
TCTATAACTGGAACTCAGAC+AGG 0.498474 tig0016171:-20830 None:intergenic
TGCATTAGTAACAGAATAGT+GGG 0.498479 tig0016171:-19450 None:intergenic
GGAAGAAGAGGAAGCAGAGA+CGG 0.498925 tig0016171:+18373 Msa1357760:CDS
GCAGGAGAGGTTATACTCAC+AGG 0.501375 tig0016171:+19470 Msa1357760:CDS
GCATGCATTAGAGCAGTTAG+TGG 0.503772 tig0016171:-20466 None:intergenic
TTGCATTCAAGAACTTCCTC+AGG 0.507388 tig0016171:-19746 None:intergenic
CTGCTCCTGTTCCTAGTGCT+AGG 0.511600 tig0016171:+18608 Msa1357760:CDS
ATTATAACAAAATGGATGCT+AGG 0.516074 tig0016171:+19873 Msa1357760:CDS
AGTAGTGTGAAGGGAAGAAG+AGG 0.521967 tig0016171:+18361 Msa1357760:CDS
GCAGCTAACATTAACGCTGC+TGG 0.527383 tig0016171:-18412 None:intergenic
GTAGGCCATCCAATCTCCAT+TGG 0.529727 tig0016171:-18502 None:intergenic
ATACTCACAGGGAGGACTAA+AGG 0.532224 tig0016171:+19482 Msa1357760:CDS
CATCCACCACTCACCATCAC+TGG 0.532322 tig0016171:-18328 None:intergenic
CTGAGTTCCAGTTATAGAAA+CGG 0.539389 tig0016171:+20835 Msa1357760:CDS
AGCTGCTTTGAAGAAATCAA+TGG 0.544551 tig0016171:+18429 Msa1357760:CDS
ATCATCCAATGGAGATTGGA+TGG 0.548029 tig0016171:+18497 Msa1357760:CDS
ACGGCGGAGATTACATCGTC+AGG 0.549741 tig0016171:-18472 None:intergenic
ATGATCATCATAATCTAACT+TGG 0.553962 tig0016171:-20644 None:intergenic
TTCTGTTACTAATGCAGGAG+AGG 0.557243 tig0016171:+19457 Msa1357760:CDS
GGATGCTAGGAATATTGCTA+TGG 0.560041 tig0016171:+19886 Msa1357760:CDS
GAAGATGAGAGGACCAGTGA+TGG 0.565192 tig0016171:+18315 Msa1357760:exon
CGGTGGTGGTAGTAGTGTGA+AGG 0.570136 tig0016171:+18351 Msa1357760:CDS
GGCTGATGTTGTAGTTGAAG+AGG 0.571255 tig0016171:+19850 Msa1357760:CDS
ACATGAACTTCAAGCTCAAG+AGG 0.579188 tig0016171:-18583 None:intergenic
AGACACCAATGATGTGGAGA+TGG 0.581128 tig0016171:+20915 Msa1357760:CDS
TAAAACGATCAAACGTGACA+TGG 0.583384 tig0016171:-18543 None:intergenic
ATGGTGAGTGGTGGATGCGG+TGG 0.589261 tig0016171:+18334 Msa1357760:CDS
CTCCGCCGTTCATCATCCAA+TGG 0.590362 tig0016171:+18486 Msa1357760:CDS
ATAAGAAGATAGTGTTTGTG+TGG 0.594668 tig0016171:+18288 Msa1357760:five_prime_UTR
CTAGCACTAGGAACAGGAGC+AGG 0.596477 tig0016171:-18607 None:intergenic
AAGTAAAGACACCAATGATG+TGG 0.596557 tig0016171:+20909 Msa1357760:CDS
CAGGAGAGGTTATACTCACA+GGG 0.599702 tig0016171:+19471 Msa1357760:CDS
ATCTGATGAATGAGATGACA+TGG 0.603264 tig0016171:-20572 None:intergenic
AAAGTAAGGTACCTAGCACT+AGG 0.611243 tig0016171:-18619 None:intergenic
TCTTAATTAGATGCAAACAA+AGG 0.614596 tig0016171:-20970 None:intergenic
AACGGCTCGACAACAACTGA+GGG 0.615985 tig0016171:+20853 Msa1357760:CDS
AATCTCCATTGGATGATGAA+CGG 0.625225 tig0016171:-18491 None:intergenic
ATCAATGGTTGCTTGTAGTG+TGG 0.627262 tig0016171:+18444 Msa1357760:CDS
GTGATGGTGAGTGGTGGATG+CGG 0.627794 tig0016171:+18331 Msa1357760:CDS
AAGAGGAAGCAGAGACGGCG+GGG 0.629048 tig0016171:+18378 Msa1357760:CDS
AAACGGCTCGACAACAACTG+AGG 0.661142 tig0016171:+20852 Msa1357760:CDS
CAACAAGAAATGTATACTAG+CGG 0.664805 tig0016171:+20607 Msa1357760:CDS
GGACCAGTGATGGTGAGTGG+TGG 0.667309 tig0016171:+18325 Msa1357760:CDS
GGTGGTGGTAGTAGTGTGAA+GGG 0.668108 tig0016171:+18352 Msa1357760:CDS
CTCCATTGGATGATGAACGG+CGG 0.679903 tig0016171:-18488 None:intergenic
GTTAGATGGACTTTCACCTG+AGG 0.686418 tig0016171:+19730 Msa1357760:CDS
AGAGAGTCCTACCAAAACTG+AGG 0.688445 tig0016171:+20804 Msa1357760:CDS
ACTAACTGCTCTAATGCATG+CGG 0.693394 tig0016171:+20468 Msa1357760:CDS
AGAGGACCAGTGATGGTGAG+TGG 0.694819 tig0016171:+18322 Msa1357760:CDS
TGTGTGGAGAAGAAGATGAG+AGG 0.729777 tig0016171:+18304 Msa1357760:exon
GCATTAGTAACAGAATAGTG+GGG 0.751385 tig0016171:-19449 None:intergenic
GAGAGGTTATACTCACAGGG+AGG 0.769530 tig0016171:+19474 Msa1357760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAAAAAATTGAATTTTTTT+AGG + tig0016171:18883-18902 Msa1357760:intron 10.0%
!!! AAAATTTTAATTATAGCAAT+TGG - tig0016171:19280-19299 None:intergenic 10.0%
!! AATTAAAAAATGAAAAAAGA+GGG - tig0016171:19573-19592 None:intergenic 10.0%
!! TAATTAAAAAATGAAAAAAG+AGG - tig0016171:19574-19593 None:intergenic 10.0%
!!! TTTTTAATTAATGAATTTTC+AGG + tig0016171:19584-19603 Msa1357760:intron 10.0%
!!! AAATTTTGATTTTGAATTTG+AGG - tig0016171:18252-18271 None:intergenic 15.0%
!! AAATGAAAAAGAAAAAAGTA+AGG - tig0016171:18636-18655 None:intergenic 15.0%
!! ACTAAAAGTTAGTAATTAAA+TGG + tig0016171:19039-19058 Msa1357760:intron 15.0%
!!! TTTTGTAGTAACATTTCAAT+GGG + tig0016171:18846-18865 Msa1357760:intron 20.0%
!!! TTTTAGGGTAATTTTATTGT+TGG + tig0016171:18899-18918 Msa1357760:intron 20.0%
!!! AACTTTTCATCATCAAATAA+AGG - tig0016171:19095-19114 None:intergenic 20.0%
!!! AGTTTCTTTGATTTAATGAT+TGG + tig0016171:19227-19246 Msa1357760:intron 20.0%
!!! GTTTCTTTGATTTAATGATT+GGG + tig0016171:19228-19247 Msa1357760:intron 20.0%
!!! CATGATTTAATAATAGCTTT+TGG - tig0016171:19303-19322 None:intergenic 20.0%
!!! AGGGAAAAATATTTTATAGT+TGG - tig0016171:19554-19573 None:intergenic 20.0%
!! CAAAAACATTAAAACTTTAG+GGG - tig0016171:20130-20149 None:intergenic 20.0%
!! GCAAAAACATTAAAACTTTA+GGG - tig0016171:20131-20150 None:intergenic 20.0%
!! TGCAAAAACATTAAAACTTT+AGG - tig0016171:20132-20151 None:intergenic 20.0%
!! TCCAAATATACTAAACTATT+TGG + tig0016171:21157-21176 Msa1357760:three_prime_UTR 20.0%
!! TCCAAATAGTTTAGTATATT+TGG - tig0016171:21161-21180 None:intergenic 20.0%
!!! TGAGTTTTGATGTTTTTGTT+GGG - tig0016171:18228-18247 None:intergenic 25.0%
!!! ATGAGTTTTGATGTTTTTGT+TGG - tig0016171:18229-18248 None:intergenic 25.0%
!!! TGATCGTTTTAATGGATTTT+TGG + tig0016171:18555-18574 Msa1357760:CDS 25.0%
!!! GATCGTTTTAATGGATTTTT+GGG + tig0016171:18556-18575 Msa1357760:CDS 25.0%
!! AAACTCGAGATTTTACTTAA+GGG + tig0016171:18773-18792 Msa1357760:intron 25.0%
! CTAAATTAGAAACCAACATT+TGG - tig0016171:18826-18845 None:intergenic 25.0%
!! GTTTTGTAGTAACATTTCAA+TGG + tig0016171:18845-18864 Msa1357760:intron 25.0%
! TTTGTAGTAACATTTCAATG+GGG + tig0016171:18847-18866 Msa1357760:intron 25.0%
! TTTCATATTATCCTTCAATG+AGG + tig0016171:18988-19007 Msa1357760:intron 25.0%
! ATGATGAAAAGTTTCCATAA+CGG + tig0016171:19102-19121 Msa1357760:intron 25.0%
! AAGAAACTTATTGTAAGTAG+TGG - tig0016171:19215-19234 None:intergenic 25.0%
! CAATGTTCTTATGATTCAAA+AGG + tig0016171:19417-19436 Msa1357760:CDS 25.0%
! TTTCGTATAAATCCAGAAAA+TGG + tig0016171:19618-19637 Msa1357760:CDS 25.0%
! ACATTGATGTACATTGTTTA+GGG + tig0016171:19691-19710 Msa1357760:intron 25.0%
! TGAAGAGGATTATAACAAAA+TGG + tig0016171:19865-19884 Msa1357760:CDS 25.0%
! ATTATAACAAAATGGATGCT+AGG + tig0016171:19873-19892 Msa1357760:CDS 25.0%
! ATCATTTACACACAAAAATG+TGG - tig0016171:20292-20311 None:intergenic 25.0%
!! TTTTCAGTAAATTCATCACT+TGG - tig0016171:20495-20514 None:intergenic 25.0%
! ATGATCATCATAATCTAACT+TGG - tig0016171:20647-20666 None:intergenic 25.0%
! TCTTAATTAGATGCAAACAA+AGG - tig0016171:20973-20992 None:intergenic 25.0%
!! ATTTTGTGTTTTACAAGCAA+GGG + tig0016171:21039-21058 Msa1357760:three_prime_UTR 25.0%
! CTTGTTTATACTTGATTAGT+AGG + tig0016171:21065-21084 Msa1357760:three_prime_UTR 25.0%
!!! TAGTAGGTTTTTCTTGTTTT+TGG + tig0016171:21081-21100 Msa1357760:three_prime_UTR 25.0%
! AGATTGATTAAGCCTAAAAA+TGG + tig0016171:21243-21262 Msa1357760:three_prime_UTR 25.0%
!! CGTTCATGATCAAAATTTTA+TGG + tig0016171:21282-21301 Msa1357760:three_prime_UTR 25.0%
ATAAGAAGATAGTGTTTGTG+TGG + tig0016171:18288-18307 Msa1357760:five_prime_UTR 30.0%
CTAACATGCTTAACATTTGT+AGG - tig0016171:18523-18542 None:intergenic 30.0%
! CAAACTCGAGATTTTACTTA+AGG + tig0016171:18772-18791 Msa1357760:intron 30.0%
TTACTTAAGGGATCTAAATC+CGG + tig0016171:18785-18804 Msa1357760:intron 30.0%
! TAGGGTAATTTTATTGTTGG+TGG + tig0016171:18902-18921 Msa1357760:intron 30.0%
AACTGAAAAAACCTCATTGA+AGG - tig0016171:19002-19021 None:intergenic 30.0%
!!! TTCAATGAGGTTTTTTCAGT+TGG + tig0016171:19001-19020 Msa1357760:intron 30.0%
AAAGGCAAATCTCAATAACT+TGG - tig0016171:19077-19096 None:intergenic 30.0%
TTGTAAGTAGTGGCATAAAA+CGG - tig0016171:19205-19224 None:intergenic 30.0%
TCACAAATCACATCAGAATA+TGG - tig0016171:19347-19366 None:intergenic 30.0%
TGCATTAGTAACAGAATAGT+GGG - tig0016171:19453-19472 None:intergenic 30.0%
! TATAGTTGGTTCACATAATC+TGG - tig0016171:19540-19559 None:intergenic 30.0%
!! TTAATGAATTTTCAGGCTGA+AGG + tig0016171:19591-19610 Msa1357760:intron 30.0%
CAATGTACATCAATGTCATT+TGG - tig0016171:19687-19706 None:intergenic 30.0%
GACATTGATGTACATTGTTT+AGG + tig0016171:19690-19709 Msa1357760:intron 30.0%
TTGAATCAGCTTTGCTTAAT+TGG + tig0016171:19813-19832 Msa1357760:CDS 30.0%
TGAATCAGCTTTGCTTAATT+GGG + tig0016171:19814-19833 Msa1357760:CDS 30.0%
AGAGCCTAATAAAATCATGT+GGG + tig0016171:19993-20012 Msa1357760:intron 30.0%
GCATTAAGCATAATTTCGTT+TGG - tig0016171:20342-20361 None:intergenic 30.0%
CATGCATGTGTAATATATAC+AGG - tig0016171:20371-20390 None:intergenic 30.0%
CAACAAGAAATGTATACTAG+CGG + tig0016171:20607-20626 Msa1357760:CDS 30.0%
AGAATGCTTCTTAGAACAAT+TGG + tig0016171:20720-20739 Msa1357760:CDS 30.0%
GTGTCTTTACTTTCTATTGA+TGG - tig0016171:20901-20920 None:intergenic 30.0%
! GATTTTGTGTTTTACAAGCA+AGG + tig0016171:21038-21057 Msa1357760:three_prime_UTR 30.0%
! TTTTGTGTTTTACAAGCAAG+GGG + tig0016171:21040-21059 Msa1357760:three_prime_UTR 30.0%
TTTGGACACATAACATAATC+AGG - tig0016171:21143-21162 None:intergenic 30.0%
ATTAGCTACGAATTTCATCT+AGG + tig0016171:21184-21203 Msa1357760:three_prime_UTR 30.0%
! GTGCTTGTTAATCTATTCTT+AGG + tig0016171:21216-21235 Msa1357760:three_prime_UTR 30.0%
!! ACATAACTAGCACCATTTTT+AGG - tig0016171:21258-21277 None:intergenic 30.0%
!! AGCTGCTTTGAAGAAATCAA+TGG + tig0016171:18429-18448 Msa1357760:CDS 35.0%
AATCTCCATTGGATGATGAA+CGG - tig0016171:18494-18513 None:intergenic 35.0%
TAAAACGATCAAACGTGACA+TGG - tig0016171:18546-18565 None:intergenic 35.0%
! GTCACGTTTGATCGTTTTAA+TGG + tig0016171:18547-18566 Msa1357760:CDS 35.0%
! CAACATTTGGTTAGTCCAAA+TGG - tig0016171:18813-18832 None:intergenic 35.0%
CATTTGGACTAACCAAATGT+TGG + tig0016171:18811-18830 Msa1357760:intron 35.0%
AGTTTCCATAACGGTAATGT+AGG + tig0016171:19111-19130 Msa1357760:intron 35.0%
CAAATCCTACATTACCGTTA+TGG - tig0016171:19119-19138 None:intergenic 35.0%
AATTGCAGTGTTAGTGTGTT+TGG + tig0016171:19375-19394 Msa1357760:intron 35.0%
GCATTAGTAACAGAATAGTG+GGG - tig0016171:19452-19471 None:intergenic 35.0%
CTGCATTAGTAACAGAATAG+TGG - tig0016171:19454-19473 None:intergenic 35.0%
CACTATTCTGTTACTAATGC+AGG + tig0016171:19452-19471 Msa1357760:CDS 35.0%
AAATCCAGAAAATGGTGAAG+AGG + tig0016171:19626-19645 Msa1357760:intron 35.0%
! TTAAGCAAAGCTGATTCAAC+TGG - tig0016171:19812-19831 None:intergenic 35.0%
TAATTGGGCTGTTGATCTTA+TGG + tig0016171:19829-19848 Msa1357760:CDS 35.0%
! TTTTGCTCCAAATATGACTC+AGG + tig0016171:19910-19929 Msa1357760:CDS 35.0%
AAGCATACCTGAGTCATATT+TGG - tig0016171:19920-19939 None:intergenic 35.0%
CAGAGCCTAATAAAATCATG+TGG + tig0016171:19992-20011 Msa1357760:intron 35.0%
! GGATCCCACATGATTTTATT+AGG - tig0016171:20000-20019 None:intergenic 35.0%
GCATAAAACATTCAAATCCG+AGG - tig0016171:20033-20052 None:intergenic 35.0%
TTACACACAAAAATGTGGAG+TGG - tig0016171:20287-20306 None:intergenic 35.0%
ATCTGATGAATGAGATGACA+TGG - tig0016171:20575-20594 None:intergenic 35.0%
CTGAGTTCCAGTTATAGAAA+CGG + tig0016171:20835-20854 Msa1357760:CDS 35.0%
AAGTAAAGACACCAATGATG+TGG + tig0016171:20909-20928 Msa1357760:CDS 35.0%
! AATTTGAGCTTCTTGTTGTC+AGG + tig0016171:20992-21011 Msa1357760:three_prime_UTR 35.0%
ATCAATGGTTGCTTGTAGTG+TGG + tig0016171:18444-18463 Msa1357760:CDS 40.0%
GTTCATCATCCAATGGAGAT+TGG + tig0016171:18493-18512 Msa1357760:CDS 40.0%
ATCATCCAATGGAGATTGGA+TGG + tig0016171:18497-18516 Msa1357760:CDS 40.0%
ACATGAACTTCAAGCTCAAG+AGG - tig0016171:18586-18605 None:intergenic 40.0%
! AAAGTAAGGTACCTAGCACT+AGG - tig0016171:18622-18641 None:intergenic 40.0%
!! TGGAGATTATCAGTTGGTGA+TGG - tig0016171:18708-18727 None:intergenic 40.0%
GATCTAAATCCGGTTCCATT+TGG + tig0016171:18795-18814 Msa1357760:intron 40.0%
! TTGGTTAGTCCAAATGGAAC+CGG - tig0016171:18807-18826 None:intergenic 40.0%
TTCTGTTACTAATGCAGGAG+AGG + tig0016171:19457-19476 Msa1357760:CDS 40.0%
! TGTTCCTCTTCACCATTTTC+TGG - tig0016171:19633-19652 None:intergenic 40.0%
ATGGTGAAGAGGAACATTTG+AGG + tig0016171:19637-19656 Msa1357760:intron 40.0%
TGGTGAAGAGGAACATTTGA+GGG + tig0016171:19638-19657 Msa1357760:intron 40.0%
TTGAGGGAGCAATTGAATAG+TGG + tig0016171:19654-19673 Msa1357760:intron 40.0%
TTGTTTAGGGAACTTCCTTC+AGG + tig0016171:19704-19723 Msa1357760:intron 40.0%
TTGCATTCAAGAACTTCCTC+AGG - tig0016171:19749-19768 None:intergenic 40.0%
GGATGCTAGGAATATTGCTA+TGG + tig0016171:19886-19905 Msa1357760:CDS 40.0%
ATCTTGTGACTTCACGTAGT+CGG - tig0016171:20073-20092 None:intergenic 40.0%
TAGATGAGATGACTCAAGCA+TGG - tig0016171:20158-20177 None:intergenic 40.0%
ACTAACTGCTCTAATGCATG+CGG + tig0016171:20468-20487 Msa1357760:CDS 40.0%
ATGCAGCTTCTTCAATGTTG+TGG - tig0016171:20681-20700 None:intergenic 40.0%
TCTATAACTGGAACTCAGAC+AGG - tig0016171:20833-20852 None:intergenic 40.0%
ATCTACCATCTCCACATCAT+TGG - tig0016171:20923-20942 None:intergenic 40.0%
TGTGTGGAGAAGAAGATGAG+AGG + tig0016171:18304-18323 Msa1357760:exon 45.0%
AGTAGTGTGAAGGGAAGAAG+AGG + tig0016171:18361-18380 Msa1357760:CDS 45.0%
CACCAACTGATAATCTCCAC+CGG + tig0016171:18709-18728 Msa1357760:intron 45.0%
ACCAACTGATAATCTCCACC+GGG + tig0016171:18710-18729 Msa1357760:intron 45.0%
AATCTCGAGTTTGAGCAGTG+CGG - tig0016171:18765-18784 None:intergenic 45.0%
CAGGAGAGGTTATACTCACA+GGG + tig0016171:19471-19490 Msa1357760:CDS 45.0%
ATACTCACAGGGAGGACTAA+AGG + tig0016171:19482-19501 Msa1357760:CDS 45.0%
!! CTTCCTTCAGGAGTGTTAGA+TGG + tig0016171:19716-19735 Msa1357760:intron 45.0%
AGTCCATCTAACACTCCTGA+AGG - tig0016171:19722-19741 None:intergenic 45.0%
! GTTAGATGGACTTTCACCTG+AGG + tig0016171:19730-19749 Msa1357760:CDS 45.0%
GGCTGATGTTGTAGTTGAAG+AGG + tig0016171:19850-19869 Msa1357760:CDS 45.0%
CAAATCCGAGGTTGACGATT+TGG - tig0016171:20021-20040 None:intergenic 45.0%
ACTTCACGTAGTCGGTATAC+GGG - tig0016171:20065-20084 None:intergenic 45.0%
GACTTCACGTAGTCGGTATA+CGG - tig0016171:20066-20085 None:intergenic 45.0%
GGGGTGAGTTTGACAGATTT+AGG - tig0016171:20111-20130 None:intergenic 45.0%
GCATGCATTAGAGCAGTTAG+TGG - tig0016171:20469-20488 None:intergenic 45.0%
TCTTCTTGCAAATGCTCTGC+AGG - tig0016171:20781-20800 None:intergenic 45.0%
AGAGAGTCCTACCAAAACTG+AGG + tig0016171:20804-20823 Msa1357760:CDS 45.0%
!! CAGGAATCCTCAGTTTTGGT+AGG - tig0016171:20814-20833 None:intergenic 45.0%
! CAGACAGGAATCCTCAGTTT+TGG - tig0016171:20818-20837 None:intergenic 45.0%
TGTCGAGCCGTTTCTATAAC+TGG - tig0016171:20845-20864 None:intergenic 45.0%
AGACACCAATGATGTGGAGA+TGG + tig0016171:20915-20934 Msa1357760:CDS 45.0%
!!! TAAAAAATTGAATTTTTTTA+GGG + tig0016171:18884-18903 Msa1357760:intron 5.0%
GAAGATGAGAGGACCAGTGA+TGG + tig0016171:18315-18334 Msa1357760:exon 50.0%
! GGTGGTGGTAGTAGTGTGAA+GGG + tig0016171:18352-18371 Msa1357760:CDS 50.0%
GGAAGAAGAGGAAGCAGAGA+CGG + tig0016171:18373-18392 Msa1357760:CDS 50.0%
GCAGCTAACATTAACGCTGC+TGG - tig0016171:18415-18434 None:intergenic 50.0%
CTCCATTGGATGATGAACGG+CGG - tig0016171:18491-18510 None:intergenic 50.0%
GTAGGCCATCCAATCTCCAT+TGG - tig0016171:18505-18524 None:intergenic 50.0%
AGGTACCTAGCACTAGGAAC+AGG - tig0016171:18616-18635 None:intergenic 50.0%
TCCCGGTGGAGATTATCAGT+TGG - tig0016171:18714-18733 None:intergenic 50.0%
GCAGTGCGGATGAAAGTAGT+CGG - tig0016171:18751-18770 None:intergenic 50.0%
GCAGGAGAGGTTATACTCAC+AGG + tig0016171:19470-19489 Msa1357760:CDS 50.0%
GAGAGGTTATACTCACAGGG+AGG + tig0016171:19474-19493 Msa1357760:CDS 50.0%
AGGCTCTGCGATTTCTTGCA+GGG - tig0016171:19980-19999 None:intergenic 50.0%
TAGGCTCTGCGATTTCTTGC+AGG - tig0016171:19981-20000 None:intergenic 50.0%
GGGATCCAAATCGTCAACCT+CGG + tig0016171:20013-20032 Msa1357760:intron 50.0%
!! CTGCTGTTGCTGTTTCTTCG+CGG - tig0016171:20543-20562 None:intergenic 50.0%
AAACGGCTCGACAACAACTG+AGG + tig0016171:20852-20871 Msa1357760:CDS 50.0%
AACGGCTCGACAACAACTGA+GGG + tig0016171:20853-20872 Msa1357760:CDS 50.0%
! AGAGGACCAGTGATGGTGAG+TGG + tig0016171:18322-18341 Msa1357760:CDS 55.0%
CATCCACCACTCACCATCAC+TGG - tig0016171:18331-18350 None:intergenic 55.0%
!! GTGATGGTGAGTGGTGGATG+CGG + tig0016171:18331-18350 Msa1357760:CDS 55.0%
! CGGTGGTGGTAGTAGTGTGA+AGG + tig0016171:18351-18370 Msa1357760:CDS 55.0%
AGAAGAGGAAGCAGAGACGG+CGG + tig0016171:18376-18395 Msa1357760:CDS 55.0%
ACGGCGGAGATTACATCGTC+AGG - tig0016171:18475-18494 None:intergenic 55.0%
CTCCGCCGTTCATCATCCAA+TGG + tig0016171:18486-18505 Msa1357760:CDS 55.0%
CTAGCACTAGGAACAGGAGC+AGG - tig0016171:18610-18629 None:intergenic 55.0%
CTGCTCCTGTTCCTAGTGCT+AGG + tig0016171:18608-18627 Msa1357760:CDS 55.0%
AAAGTAGTCGGTGGCCAGTC+AGG - tig0016171:18739-18758 None:intergenic 55.0%
GTGCGGATGAAAGTAGTCGG+TGG - tig0016171:18748-18767 None:intergenic 55.0%
GGCTCTGCGATTTCTTGCAG+GGG - tig0016171:19979-19998 None:intergenic 55.0%
! GGACCAGTGATGGTGAGTGG+TGG + tig0016171:18325-18344 Msa1357760:CDS 60.0%
!! ATGGTGAGTGGTGGATGCGG+TGG + tig0016171:18334-18353 Msa1357760:CDS 60.0%
GAAGAGGAAGCAGAGACGGC+GGG + tig0016171:18377-18396 Msa1357760:CDS 60.0%
AAGAGGAAGCAGAGACGGCG+GGG + tig0016171:18378-18397 Msa1357760:CDS 60.0%
TCTCCACCGGGAAACCTGAC+TGG + tig0016171:18722-18741 Msa1357760:intron 60.0%
!! GTGAGTGGTGGATGCGGTGG+TGG + tig0016171:18337-18356 Msa1357760:CDS 65.0%
TGGCCAGTCAGGTTTCCCGG+TGG - tig0016171:18728-18747 None:intergenic 65.0%
CGGTGGCCAGTCAGGTTTCC+CGG - tig0016171:18731-18750 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0016171 gene 18195 21313 18195 ID=Msa1357760;Name=Msa1357760
tig0016171 mRNA 18195 21313 18195 ID=Msa1357760-mRNA-1;Parent=Msa1357760;Name=Msa1357760-mRNA-1;_AED=0.15;_eAED=0.15;_QI=124|0.75|0.6|1|1|1|5|323|401
tig0016171 exon 18195 18629 18195 ID=Msa1357760-mRNA-1:exon:10486;Parent=Msa1357760-mRNA-1
tig0016171 exon 19383 19503 19383 ID=Msa1357760-mRNA-1:exon:10487;Parent=Msa1357760-mRNA-1
tig0016171 exon 19606 19639 19606 ID=Msa1357760-mRNA-1:exon:10488;Parent=Msa1357760-mRNA-1
tig0016171 exon 19726 19931 19726 ID=Msa1357760-mRNA-1:exon:10489;Parent=Msa1357760-mRNA-1
tig0016171 exon 20457 21313 20457 ID=Msa1357760-mRNA-1:exon:10490;Parent=Msa1357760-mRNA-1
tig0016171 five_prime_UTR 18195 18318 18195 ID=Msa1357760-mRNA-1:five_prime_utr;Parent=Msa1357760-mRNA-1
tig0016171 CDS 18319 18629 18319 ID=Msa1357760-mRNA-1:cds;Parent=Msa1357760-mRNA-1
tig0016171 CDS 19383 19503 19383 ID=Msa1357760-mRNA-1:cds;Parent=Msa1357760-mRNA-1
tig0016171 CDS 19606 19639 19606 ID=Msa1357760-mRNA-1:cds;Parent=Msa1357760-mRNA-1
tig0016171 CDS 19726 19931 19726 ID=Msa1357760-mRNA-1:cds;Parent=Msa1357760-mRNA-1
tig0016171 CDS 20457 20990 20457 ID=Msa1357760-mRNA-1:cds;Parent=Msa1357760-mRNA-1
tig0016171 three_prime_UTR 20991 21313 20991 ID=Msa1357760-mRNA-1:three_prime_utr;Parent=Msa1357760-mRNA-1
Gene Sequence

>Msa1357760

ATGAGAGGACCAGTGATGGTGAGTGGTGGATGCGGTGGTGGTAGTAGTGTGAAGGGAAGAAGAGGAAGCAGAGACGGCGGGGAAGAAGTGTCGCCAGCAGCGTTAATGTTAGCTGCTTTGAAGAAATCAATGGTTGCTTGTAGTGTGGAGAGTCCTGACGATGTAATCTCCGCCGTTCATCATCCAATGGAGATTGGATGGCCTACAAATGTTAAGCATGTTAGCCATGTCACGTTTGATCGTTTTAATGGATTTTTGGGTCTTCCTCTTGAGCTTGAAGTTCATGTTCCTGCTCCTGTTCCTAGTGCTAGTGTTAGTGTGTTTGGTGTCTCAGCAGAATCAATGCAATGTTCTTATGATTCAAAAGGAAACAGTGTCCCCACTATTCTGTTACTAATGCAGGAGAGGTTATACTCACAGGGAGGACTAAAGGCTGAAGGAATATTTCGTATAAATCCAGAAAATGGAGTGTTAGATGGACTTTCACCTGAGGAAGTTCTTGAATGCAACACTGAAGAAGAATCTGTTGAGCTTGTGAAGCAGCTGAAACCAGTTGAATCAGCTTTGCTTAATTGGGCTGTTGATCTTATGGCTGATGTTGTAGTTGAAGAGGATTATAACAAAATGGATGCTAGGAATATTGCTATGGTTTTTGCTCCAAATATGACTCAGATGTCTGATCCACTAACTGCTCTAATGCATGCGGTCCAAGTGATGAATTTACTGAAAACACTGATATTGAAGACACTTCGAGACCGCGAAGAAACAGCAACAGCAGAATATTCATCCATGTCATCTCATTCATCAGATGAATATGACAGTCAACAAGAAATGTATACTAGCGGTGAATTGAAAAGAACCAAGTTAGATTATGATGATCATGTTGACTACAGCCACAACATTGAAGAAGCTGCATCTGCTCTAAGTGAGATAGAAGAATGCTTCTTAGAACAATTGGATGATGTTCAGACAAAACGATTCACAAAAGAAAAACCTGCAGAGCATTTGCAAGAAGAGTTAGAGAGTCCTACCAAAACTGAGGATTCCTGTCTGAGTTCCAGTTATAGAAACGGCTCGACAACAACTGAGGGATCAAATGCTGACACAAGTAGTCCATCAATAGAAAGTAAAGACACCAATGATGTGGAGATGGTAGATAAATTTAGTGATTCTGTTTCACTCTTGCCTTTGTTTGCATCTAATTAA

Protein sequence

>Msa1357760

MRGPVMVSGGCGGGSSVKGRRGSRDGGEEVSPAALMLAALKKSMVACSVESPDDVISAVHHPMEIGWPTNVKHVSHVTFDRFNGFLGLPLELEVHVPAPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENGVLDGLSPEEVLECNTEEESVELVKQLKPVESALLNWAVDLMADVVVEEDYNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLRDREETATAEYSSMSSHSSDEYDSQQEMYTSGELKRTKLDYDDHVDYSHNIEEAASALSEIEECFLEQLDDVQTKRFTKEKPAEHLQEELESPTKTEDSCLSSSYRNGSTTTEGSNADTSSPSIESKDTNDVEMVDKFSDSVSLLPLFASN*