AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0976950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0976950 MtrunA17_Chr6g0456031 98.148 486 9 0 1 486 1 486 0.0 979
Msa0976950 MtrunA17_Chr1g0204511 75.414 423 104 0 60 482 38 460 0.0 677
Msa0976950 MtrunA17_Chr6g0456021 97.333 75 2 0 412 486 10 84 3.27e-48 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0976950 AT1G19920.1 75.720 486 108 2 1 486 1 476 0.0 766
Msa0976950 AT3G22890.1 77.033 418 94 1 56 473 34 449 0.0 674
Msa0976950 AT4G14680.1 69.565 460 137 1 26 482 1 460 0.0 667
Msa0976950 AT5G43780.1 75.895 419 97 2 59 476 41 456 0.0 662
Msa0976950 AT4G14680.2 69.575 424 126 1 26 446 1 424 0.0 613

Find 156 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAAATTTGATTCTTAAA+AGG 0.151066 6_4:-11218987 None:intergenic
AGAAACTAATTGTAACTTAA+TGG 0.217487 6_4:-11219379 None:intergenic
CTTAATGGTTAGAGACATTA+TGG 0.240392 6_4:-11219364 None:intergenic
AAAGATTTCCTCTTTATATC+TGG 0.241564 6_4:+11223323 Msa0976950:CDS
ATTCATTAACTGTTACTAAA+AGG 0.257252 6_4:+11219511 Msa0976950:CDS
AAGTTCTTCTACATAACTTA+TGG 0.273185 6_4:-11224923 None:intergenic
TCTTCTAATGTTGGGTTGAT+TGG 0.284523 6_4:+11219885 Msa0976950:CDS
TCATTGCTCCAGCTGGAAAT+TGG 0.285849 6_4:+11221685 Msa0976950:CDS
TGTATTGGTGGGACCATAAT+TGG 0.287618 6_4:-11219089 None:intergenic
AGATGCATCAAAATATGAAT+TGG 0.307760 6_4:-11219058 None:intergenic
ACACTATCTACTAGAACTTA+TGG 0.314779 6_4:-11224992 None:intergenic
ATAACAACCACCTATGACTA+TGG 0.315948 6_4:-11219227 None:intergenic
TAATGAGTTTAGGCCTTGTT+TGG 0.326623 6_4:+11224766 Msa0976950:three_prime_UTR
AAGTTATGTAGAAGAACTTA+TGG 0.336318 6_4:+11224927 Msa0976950:three_prime_UTR
TGAAAATGAAAGAGAATCTA+AGG 0.339569 6_4:+11219632 Msa0976950:CDS
TTTCATTTCCTAATGAGTTT+AGG 0.340392 6_4:+11224756 Msa0976950:three_prime_UTR
GATCAAGAACTCCATCTTCT+AGG 0.341116 6_4:-11222573 None:intergenic
TTGGCTTATCGGAGGAGATT+TGG 0.342784 6_4:+11221704 Msa0976950:CDS
TTTCTTCCAAAACCCACTTT+TGG 0.368462 6_4:+11219483 Msa0976950:CDS
GTGGAGCAGGGTGAGAATAT+TGG 0.374902 6_4:-11219027 None:intergenic
CCAGCTGGAAATTGGCTTAT+CGG 0.378507 6_4:+11221693 Msa0976950:CDS
ATATTGTTGGTATTCTTAGA+AGG 0.384953 6_4:+11219919 Msa0976950:CDS
TAATGAATTGTTACCAAAAG+TGG 0.391056 6_4:-11219496 None:intergenic
TTGTTACCAAAAGTGGGTTT+TGG 0.393057 6_4:-11219489 None:intergenic
GCTATCTCCCAAGCAACTTC+GGG 0.399642 6_4:+11221773 Msa0976950:CDS
AAACAAGGCCTAAACTCATT+AGG 0.402457 6_4:-11224764 None:intergenic
GATGAGACTAAAGAGAGAAT+TGG 0.403307 6_4:+11219858 Msa0976950:CDS
TGGCCGCGATCCCGCTGGTA+TGG 0.403827 6_4:+11222708 Msa0976950:CDS
CAACATCTCGATCAAGAATT+CGG 0.404393 6_4:+11224688 Msa0976950:three_prime_UTR
TAACAAAAGTTGATTATGAA+TGG 0.405968 6_4:+11219688 Msa0976950:CDS
GATTGTTAAGAGTAAAACTT+AGG 0.405988 6_4:+11224638 Msa0976950:three_prime_UTR
GAGACATTATGGGAAATTGA+TGG 0.406457 6_4:-11219353 None:intergenic
GGCTATCTCCCAAGCAACTT+CGG 0.407867 6_4:+11221772 Msa0976950:CDS
AGACCGTCATTGTATTTGAT+AGG 0.409505 6_4:-11221738 None:intergenic
TTGGATCTTCTTCTAATGTT+GGG 0.411009 6_4:+11219877 Msa0976950:CDS
TGCATGTGATTGGTGAAGGT+TGG 0.412816 6_4:+11219712 Msa0976950:CDS
GATGCAATAGCAATTTGTAT+TGG 0.414032 6_4:-11219104 None:intergenic
GCATGTGATTGGTGAAGGTT+GGG 0.416423 6_4:+11219713 Msa0976950:CDS
TGATGGAAATATAGAAACTA+TGG 0.425467 6_4:-11222605 None:intergenic
GGGTGTATTAGTAGATCTTA+TGG 0.425869 6_4:+11219605 Msa0976950:CDS
ATTGGATCTTCTTCTAATGT+TGG 0.426404 6_4:+11219876 Msa0976950:CDS
GGCGCCAACTTCTATATTGT+TGG 0.427333 6_4:+11222688 Msa0976950:CDS
TTATGGGAAATTGATGGTTA+TGG 0.427762 6_4:-11219347 None:intergenic
TCCTCAACATAAGGCAATCC+TGG 0.432684 6_4:-11221660 None:intergenic
AAATTCTTCCCGAAGTTGCT+TGG 0.442746 6_4:-11221781 None:intergenic
AATTCTTCCCGAAGTTGCTT+GGG 0.443602 6_4:-11221780 None:intergenic
ACGACGTTCCGTTAGATGTC+AGG 0.444665 6_4:+11221964 Msa0976950:CDS
GATGCATCAAAATATGAATT+GGG 0.445762 6_4:-11219057 None:intergenic
GGGTCATCCAACTGAGAAAC+GGG 0.451624 6_4:+11222729 Msa0976950:CDS
TGTTCATAGGTCCTAGAAGA+TGG 0.456208 6_4:+11222562 Msa0976950:intron
TCATCAATAGACAAAACAAT+AGG 0.464015 6_4:-11219837 None:intergenic
TCCTGGAGCAGTTGTTCCCC+AGG 0.464917 6_4:-11221643 None:intergenic
GGCCGCGATCCCGCTGGTAT+GGG 0.465516 6_4:+11222709 Msa0976950:CDS
GAAATTGATGGTTATGGTGT+TGG 0.467521 6_4:-11219341 None:intergenic
TTATTGCTTCACCCTCTTGG+AGG 0.470733 6_4:+11221927 Msa0976950:CDS
AACTTCGGGAAGAATTTGAT+AGG 0.477196 6_4:+11221787 Msa0976950:CDS
AGAGGGTGAAGCAATAAAAT+CGG 0.478032 6_4:-11221921 None:intergenic
ATAGAAACTATGGTTGTCTC+AGG 0.480143 6_4:-11222595 None:intergenic
AGAGAGAAAGAGAAGAACGT+GGG 0.480312 6_4:-11219316 None:intergenic
AACAAAAGTTGATTATGAAT+GGG 0.487034 6_4:+11219689 Msa0976950:CDS
GACTTGTATGACCCTGATCA+TGG 0.490265 6_4:+11222751 Msa0976950:CDS
GCGAAGGCACGGATAAATGC+AGG 0.491591 6_4:+11222667 Msa0976950:CDS
ATATGAATTGGGACTGAAAG+TGG 0.491966 6_4:-11219046 None:intergenic
GCAATAGCAATTTGTATTGG+TGG 0.492049 6_4:-11219101 None:intergenic
TACAAGTCCCGTTTCTCAGT+TGG 0.492506 6_4:-11222736 None:intergenic
TGGGTCATCCAACTGAGAAA+CGG 0.499633 6_4:+11222728 Msa0976950:CDS
CTTGGGCACATAAATCCATC+TGG 0.501128 6_4:-11224484 None:intergenic
TTAATGGTTAGAGACATTAT+GGG 0.501942 6_4:-11219363 None:intergenic
CGAATTCTTGATCGAGATGT+TGG 0.502053 6_4:-11224687 None:intergenic
ACCTGGGGAACAACTGCTCC+AGG 0.502578 6_4:+11221642 Msa0976950:CDS
GCAATACTACTTACCCTGAA+TGG 0.502969 6_4:-11222823 None:intergenic
AACATGTTCGCCATAGTCAT+AGG 0.503235 6_4:+11219217 Msa0976950:five_prime_UTR
ATTGTTGGCCGCGATCCCGC+TGG 0.508357 6_4:+11222703 Msa0976950:CDS
TCCAGGATTGCCTTATGTTG+AGG 0.509059 6_4:+11221659 Msa0976950:CDS
AAGAAAGAATAGCTAGAACC+TGG 0.509563 6_4:+11221625 Msa0976950:CDS
GCATGCCATTGAACTTCAGT+TGG 0.512655 6_4:-11222646 None:intergenic
ACAAGAACTTTCCATCCACT+TGG 0.514482 6_4:-11224502 None:intergenic
GTGAGAATATTGGACTGAAA+AGG 0.514930 6_4:-11219017 None:intergenic
GGACCTGATGGAGATATTGT+TGG 0.516536 6_4:+11219906 Msa0976950:CDS
GCGGCCAACAATATAGAAGT+TGG 0.517834 6_4:-11222692 None:intergenic
GAGAGAAAGAGAAGAACGTG+GGG 0.518619 6_4:-11219315 None:intergenic
CAGGTCCAACTGAAGTTCAA+TGG 0.520945 6_4:+11222641 Msa0976950:CDS
AATGAATTGTTACCAAAAGT+GGG 0.521221 6_4:-11219495 None:intergenic
TCCCTCATGAAACCTTTCAA+AGG 0.522904 6_4:-11219741 None:intergenic
TGGATTGGATTCACAAGAAG+TGG 0.523625 6_4:-11219195 None:intergenic
CCATCACCTATGCATTATGC+AGG 0.524244 6_4:+11222622 Msa0976950:CDS
GCAATGACCTCCTCAACATA+AGG 0.526304 6_4:-11221669 None:intergenic
ATACCAACAATATCTCCATC+AGG 0.526353 6_4:-11219909 None:intergenic
TATGAATGGGTGCATGTGAT+TGG 0.526804 6_4:+11219702 Msa0976950:CDS
CACAGGATTTCTTAACTGAA+AGG 0.527812 6_4:-11221832 None:intergenic
AGTTATGTAGAAGAACTTAT+GGG 0.532307 6_4:+11224928 Msa0976950:three_prime_UTR
CCTCTTTATATCTGGAACCA+AGG 0.532530 6_4:+11223331 Msa0976950:CDS
CAATAGCAATTTGTATTGGT+GGG 0.535222 6_4:-11219100 None:intergenic
CCTTGGTTCCAGATATAAAG+AGG 0.536679 6_4:-11223331 None:intergenic
ATGACGGTCTTGATAACTAC+AGG 0.539122 6_4:+11221751 Msa0976950:CDS
AGAAAGAATAGCTAGAACCT+GGG 0.539463 6_4:+11221626 Msa0976950:CDS
CTATGGCGAACATGTTGGAT+TGG 0.542474 6_4:-11219210 None:intergenic
GAGGAGGTCATTGCTCCAGC+TGG 0.544655 6_4:+11221678 Msa0976950:CDS
GCTCTTTGATAGAACCAGAT+GGG 0.548424 6_4:+11219583 Msa0976950:CDS
GGAAATCTTTAGCACGGCTA+GGG 0.550120 6_4:-11223310 None:intergenic
TTCAATGGCATGCGAAGGCA+CGG 0.550427 6_4:+11222656 Msa0976950:CDS
GATTTATGTGCCCAAGTGGA+TGG 0.551324 6_4:+11224491 Msa0976950:CDS
CAAGAACTTTCCATCCACTT+GGG 0.554086 6_4:-11224501 None:intergenic
AAGGTGCTTAGCATGGCTCC+TGG 0.555425 6_4:+11222778 Msa0976950:CDS
ATTGGGACTGAAAGTGGAGC+AGG 0.555886 6_4:-11219040 None:intergenic
TATGACTATGGCGAACATGT+TGG 0.556711 6_4:-11219215 None:intergenic
ATTGTTAAGAGTAAAACTTA+GGG 0.556928 6_4:+11224639 Msa0976950:three_prime_UTR
GTCCTTTGAAAGGTTTCATG+AGG 0.559187 6_4:+11219739 Msa0976950:CDS
CCGATAAGCCAATTTCCAGC+TGG 0.566219 6_4:-11221693 None:intergenic
GACCCATACCAGCGGGATCG+CGG 0.569958 6_4:-11222711 None:intergenic
TGCTCCATCCTGACATCTAA+CGG 0.570183 6_4:-11221972 None:intergenic
GGTTGGGCTAGTCCTTTGAA+AGG 0.572293 6_4:+11219729 Msa0976950:CDS
CTCTTTGATAGAACCAGATG+GGG 0.576508 6_4:+11219584 Msa0976950:CDS
GTTGGGTTGATTGGACCTGA+TGG 0.576930 6_4:+11219894 Msa0976950:CDS
GGTTGCAGCTTATGACACTA+AGG 0.577228 6_4:+11223265 Msa0976950:intron
GAGAGAGAAAGAGAAGAACG+TGG 0.584513 6_4:-11219317 None:intergenic
AGGAAATCTTTAGCACGGCT+AGG 0.586050 6_4:-11223311 None:intergenic
AATTCACTTAGGTTGAAGGA+TGG 0.586508 6_4:+11219792 Msa0976950:CDS
AGAATATTGGACTGAAAAGG+AGG 0.590066 6_4:-11219014 None:intergenic
AGTGGAGAGAATCCACCAGA+TGG 0.593721 6_4:+11224469 Msa0976950:CDS
AAACCTATCAAATACAATGA+CGG 0.595284 6_4:+11221735 Msa0976950:CDS
TGACACTAAGGTAAACAAGA+TGG 0.598361 6_4:+11223277 Msa0976950:CDS
GTTGGATGACCCATACCAGC+GGG 0.598608 6_4:-11222718 None:intergenic
TCGTCAACGTCTATTAGACA+TGG 0.599665 6_4:+11221887 Msa0976950:CDS
TGGGTGCATGTGATTGGTGA+AGG 0.599785 6_4:+11219708 Msa0976950:CDS
TTAAGAAATCCTGTGCATAA+CGG 0.600262 6_4:+11221840 Msa0976950:CDS
AAATGTTTATTACATACTAG+TGG 0.603688 6_4:+11224819 Msa0976950:three_prime_UTR
ATGTTAAGCTTCTCAAGACC+AGG 0.604829 6_4:-11222796 None:intergenic
AGGATTGCCTTATGTTGAGG+AGG 0.606777 6_4:+11221662 Msa0976950:CDS
CCTGCATAATGCATAGGTGA+TGG 0.607380 6_4:-11222622 None:intergenic
GTTGGACCTGCATAATGCAT+AGG 0.607566 6_4:-11222628 None:intergenic
TAAAGAGGAAATCTTTAGCA+CGG 0.607827 6_4:-11223316 None:intergenic
CCCTCTTGGAGGTTTCACAA+AGG 0.611931 6_4:+11221938 Msa0976950:CDS
AAGGCATGACCGTTATGCAC+AGG 0.614440 6_4:-11221849 None:intergenic
TCCTTTGAAAGGTTTCATGA+GGG 0.618890 6_4:+11219740 Msa0976950:CDS
CAGGATGGAGCAACATAGCA+AGG 0.622612 6_4:+11221983 Msa0976950:CDS
AGCTCTTTGATAGAACCAGA+TGG 0.623127 6_4:+11219582 Msa0976950:CDS
TGAAGTTCAATGGCATGCGA+AGG 0.632102 6_4:+11222651 Msa0976950:CDS
ACGAGTATCATTCATTAACA+AGG 0.632393 6_4:-11221868 None:intergenic
GAAAGAATAGCTAGAACCTG+GGG 0.638025 6_4:+11221627 Msa0976950:CDS
AAAGTTAAGAGAAGAATGCA+CGG 0.642205 6_4:+11219543 Msa0976950:CDS
TATGTCTAAGAAGATAACAC+AGG 0.658309 6_4:-11224568 None:intergenic
ATGTTCGCCATAGTCATAGG+TGG 0.662506 6_4:+11219220 Msa0976950:five_prime_UTR
CGTTCCGTTAGATGTCAGGA+TGG 0.665784 6_4:+11221968 Msa0976950:CDS
CGTCAACGTCTATTAGACAT+GGG 0.666925 6_4:+11221888 Msa0976950:CDS
GGGCACATAAATCCATCTGG+TGG 0.669860 6_4:-11224481 None:intergenic
GATGGATTTATGTGCCCAAG+TGG 0.673535 6_4:+11224487 Msa0976950:CDS
GCTGGAAATTGGCTTATCGG+AGG 0.681787 6_4:+11221696 Msa0976950:CDS
TTGTGTGGATGAGAAAAGTG+TGG 0.688415 6_4:-11219148 None:intergenic
CCTTTGTGAAACCTCCAAGA+GGG 0.692999 6_4:-11221938 None:intergenic
TTAAACTGTATATCCAAACA+AGG 0.694285 6_4:-11224779 None:intergenic
TTGGGACTGAAAGTGGAGCA+GGG 0.703184 6_4:-11219039 None:intergenic
AGTTGGATGACCCATACCAG+CGG 0.716912 6_4:-11222719 None:intergenic
ACCTTTGTGAAACCTCCAAG+AGG 0.722328 6_4:-11221939 None:intergenic
AGAGAAAGAGAAGAACGTGG+GGG 0.725295 6_4:-11219314 None:intergenic
TCTTTGATAGAACCAGATGG+GGG 0.759790 6_4:+11219585 Msa0976950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATTTGATTCTTAAA+AGG - chr6_4:11218990-11219009 None:intergenic 10.0%
!! AAAAAAATCATATAATAACC+CGG - chr6_4:11220380-11220399 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr6_4:11221014-11221033 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr6_4:11221013-11221032 Msa0976950:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr6_4:11221037-11221056 Msa0976950:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + chr6_4:11221140-11221159 Msa0976950:intron 15.0%
!! ATAGAAATATTTCAAATGAA+TGG - chr6_4:11222319-11222338 None:intergenic 15.0%
!!! TGAAATTTTGTACAAAAAAA+TGG - chr6_4:11223079-11223098 None:intergenic 15.0%
!! TGTATCATATATTAATATGT+TGG + chr6_4:11223521-11223540 Msa0976950:intron 15.0%
!! TAATTCCAATCTAAAAAAAT+TGG + chr6_4:11223809-11223828 Msa0976950:intron 15.0%
!!! ATTATGTTTTTTTGATTGTG+TGG - chr6_4:11219166-11219185 None:intergenic 20.0%
!! AGAAACTAATTGTAACTTAA+TGG - chr6_4:11219382-11219401 None:intergenic 20.0%
!!! TTTTGATTAATTTGTTTGCA+TGG - chr6_4:11219431-11219450 None:intergenic 20.0%
!!! AAAAACAAAAACAACACTTT+TGG + chr6_4:11219447-11219466 Msa0976950:CDS 20.0%
!! ATTCATTAACTGTTACTAAA+AGG + chr6_4:11219511-11219530 Msa0976950:CDS 20.0%
!!! TAACAAAAGTTGATTATGAA+TGG + chr6_4:11219688-11219707 Msa0976950:CDS 20.0%
!!! AACAAAAGTTGATTATGAAT+GGG + chr6_4:11219689-11219708 Msa0976950:CDS 20.0%
!!! AGATTAATTTAATGGGTTAT+TGG + chr6_4:11220030-11220049 Msa0976950:intron 20.0%
!!! TTTTTCCATTGTTATTATCA+TGG + chr6_4:11220071-11220090 Msa0976950:intron 20.0%
!! TTAAACCATGATAATAACAA+TGG - chr6_4:11220079-11220098 None:intergenic 20.0%
!!! ACATTTTCTCAATCTATTAT+GGG - chr6_4:11220138-11220157 None:intergenic 20.0%
!!! TACATTTTCTCAATCTATTA+TGG - chr6_4:11220139-11220158 None:intergenic 20.0%
!! AAATTATTTGACATCAATTG+CGG + chr6_4:11220290-11220309 Msa0976950:intron 20.0%
!! AAAAAATCATATAATAACCC+GGG - chr6_4:11220379-11220398 None:intergenic 20.0%
!! AATTCTTTACATAGCAAATT+GGG - chr6_4:11220583-11220602 None:intergenic 20.0%
!! AAATTCTTTACATAGCAAAT+TGG - chr6_4:11220584-11220603 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr6_4:11221023-11221042 None:intergenic 20.0%
!!! AATCTAGTTTTAAAACACAA+TGG - chr6_4:11221290-11221309 None:intergenic 20.0%
!! AAAGAAATTGAACTATAACT+CGG - chr6_4:11221359-11221378 None:intergenic 20.0%
!! TTTCTTTAAACTATTCAAAC+TGG + chr6_4:11221372-11221391 Msa0976950:intron 20.0%
!! TTCTTTAAACTATTCAAACT+GGG + chr6_4:11221373-11221392 Msa0976950:intron 20.0%
!! AAATTGAACATGTAAACAAA+CGG - chr6_4:11221479-11221498 None:intergenic 20.0%
!!! GTTCAATTTTTGAATTACAA+TGG + chr6_4:11221490-11221509 Msa0976950:intron 20.0%
!!! TTTTTGAATTACAATGGTTA+TGG + chr6_4:11221496-11221515 Msa0976950:intron 20.0%
!!! GAATCAATTTTGTTTAATAC+CGG + chr6_4:11222043-11222062 Msa0976950:intron 20.0%
!!! CGTTTAAATTTTTAAAGCAT+TGG + chr6_4:11222509-11222528 Msa0976950:intron 20.0%
!! CAATTTATCAGAAAAAGTTT+AGG - chr6_4:11223199-11223218 None:intergenic 20.0%
!! ATAAATATATAGTCTGTGTT+AGG + chr6_4:11223431-11223450 Msa0976950:intron 20.0%
!! ATATATTAATATGTTGGAAC+TGG + chr6_4:11223527-11223546 Msa0976950:intron 20.0%
!! TATATTAATATGTTGGAACT+GGG + chr6_4:11223528-11223547 Msa0976950:intron 20.0%
!! GAAAATTATGTAAAAGACAA+TGG + chr6_4:11223638-11223657 Msa0976950:intron 20.0%
!! TTAGATTGGAATTATTTAAG+AGG - chr6_4:11223803-11223822 None:intergenic 20.0%
!! ATAATGAAATTCGATCTTAA+GGG - chr6_4:11223903-11223922 None:intergenic 20.0%
!! GAACAATATTTAAAAGATAC+TGG + chr6_4:11224100-11224119 Msa0976950:intron 20.0%
!!! AGTGTCGAATTTAAAAAAAT+TGG + chr6_4:11224269-11224288 Msa0976950:intron 20.0%
!!! TTTAAAAAAATTGGTTCGTT+AGG + chr6_4:11224278-11224297 Msa0976950:intron 20.0%
!! ATAATGAAATTCGATCTTAA+GGG - chr6_4:11223903-11223922 None:intergenic 20.0%
!! TATAATGAAATTCGATCTTA+AGG - chr6_4:11223904-11223923 None:intergenic 20.0%
!! ATTGTTAAGAGTAAAACTTA+GGG + chr6_4:11224639-11224658 Msa0976950:three_prime_UTR 20.0%
!! AAATGTTTATTACATACTAG+TGG + chr6_4:11224819-11224838 Msa0976950:three_prime_UTR 20.0%
! GATGCATCAAAATATGAATT+GGG - chr6_4:11219060-11219079 None:intergenic 25.0%
! AGATGCATCAAAATATGAAT+TGG - chr6_4:11219061-11219080 None:intergenic 25.0%
!!! CATATTTTGATGCATCTTTT+TGG + chr6_4:11219064-11219083 Msa0976950:five_prime_UTR 25.0%
! TTAATGGTTAGAGACATTAT+GGG - chr6_4:11219366-11219385 None:intergenic 25.0%
!!! TTTTTGTTGTGATTGATGTT+AGG - chr6_4:11219408-11219427 None:intergenic 25.0%
! AATGAATTGTTACCAAAAGT+GGG - chr6_4:11219498-11219517 None:intergenic 25.0%
! TAATGAATTGTTACCAAAAG+TGG - chr6_4:11219499-11219518 None:intergenic 25.0%
!! TTAGATTCTCTTTCATTTTC+AGG - chr6_4:11219633-11219652 None:intergenic 25.0%
! TGAAAATGAAAGAGAATCTA+AGG + chr6_4:11219632-11219651 Msa0976950:CDS 25.0%
!!! ACTTTTGTTAGTTTCACATT+AGG - chr6_4:11219678-11219697 None:intergenic 25.0%
!!! GTTTGCATTTTAATTCACTT+AGG + chr6_4:11219781-11219800 Msa0976950:CDS 25.0%
!!! TTTTAATTCACTTAGGTTGA+AGG + chr6_4:11219788-11219807 Msa0976950:CDS 25.0%
! TCATCAATAGACAAAACAAT+AGG - chr6_4:11219840-11219859 None:intergenic 25.0%
! ATATTGTTGGTATTCTTAGA+AGG + chr6_4:11219919-11219938 Msa0976950:CDS 25.0%
!! GCATTAATTTTGTGGTTAAT+TGG + chr6_4:11219962-11219981 Msa0976950:intron 25.0%
! AATGGAAAAATTAACCAACT+AGG - chr6_4:11220061-11220080 None:intergenic 25.0%
!! TATCATGGTTTAACATTTTG+TGG + chr6_4:11220086-11220105 Msa0976950:intron 25.0%
! ACTGTCTATTTCATTATGTT+GGG + chr6_4:11220484-11220503 Msa0976950:intron 25.0%
!!! AGTTAGAAGATAATGGAATA+AGG + chr6_4:11220521-11220540 Msa0976950:intron 25.0%
!!! GTTAGAAGATAATGGAATAA+GGG + chr6_4:11220522-11220541 Msa0976950:intron 25.0%
!! TGTAGCTTTTGATAAAATCA+GGG + chr6_4:11220804-11220823 Msa0976950:intron 25.0%
! AGAAAAGGTTATTATTGCAT+TGG + chr6_4:11221100-11221119 Msa0976950:intron 25.0%
!!! CAATGTTTTAGAAATTGAAC+CGG + chr6_4:11221313-11221332 Msa0976950:intron 25.0%
! AAACCTATCAAATACAATGA+CGG + chr6_4:11221735-11221754 Msa0976950:CDS 25.0%
!!! TTCCATCATTTTTTCTCATA+TGG + chr6_4:11222010-11222029 Msa0976950:intron 25.0%
! TTGAACTAAATAAAGAAACG+CGG - chr6_4:11222108-11222127 None:intergenic 25.0%
!!! TTTTTAGCATCTACTGTTAT+AGG - chr6_4:11222251-11222270 None:intergenic 25.0%
! ACAGTAGATGCTAAAAAAAT+AGG + chr6_4:11222254-11222273 Msa0976950:intron 25.0%
! AAATTCTTCTTCTTGTTCAT+AGG + chr6_4:11222549-11222568 Msa0976950:intron 25.0%
! TGATGGAAATATAGAAACTA+TGG - chr6_4:11222608-11222627 None:intergenic 25.0%
!!! TTGCTTTTGCACATAAATTT+AGG + chr6_4:11222842-11222861 Msa0976950:intron 25.0%
! TGAAAGAACATATCTCATAT+TGG - chr6_4:11222873-11222892 None:intergenic 25.0%
! ACTTCATATACTAAAGAACA+AGG - chr6_4:11223151-11223170 None:intergenic 25.0%
! GTATTATAAAATGGCAAACA+AGG - chr6_4:11223244-11223263 None:intergenic 25.0%
!!! TGTTTGCCATTTTATAATAC+AGG + chr6_4:11223244-11223263 Msa0976950:intron 25.0%
! AAAGATTTCCTCTTTATATC+TGG + chr6_4:11223323-11223342 Msa0976950:CDS 25.0%
! AAAAAGTAAGTCACATAAAC+AGG - chr6_4:11223666-11223685 None:intergenic 25.0%
!!! TAACTTCAAGTTGTTTTCTT+TGG + chr6_4:11223946-11223965 Msa0976950:intron 25.0%
! GATTGTTAAGAGTAAAACTT+AGG + chr6_4:11224638-11224657 Msa0976950:three_prime_UTR 25.0%
! TTTCATTTCCTAATGAGTTT+AGG + chr6_4:11224756-11224775 Msa0976950:three_prime_UTR 25.0%
! TTAAACTGTATATCCAAACA+AGG - chr6_4:11224782-11224801 None:intergenic 25.0%
! AAGTTCTTCTACATAACTTA+TGG - chr6_4:11224926-11224945 None:intergenic 25.0%
! AAGTTATGTAGAAGAACTTA+TGG + chr6_4:11224927-11224946 Msa0976950:three_prime_UTR 25.0%
! AGTTATGTAGAAGAACTTAT+GGG + chr6_4:11224928-11224947 Msa0976950:three_prime_UTR 25.0%
! CAATAGCAATTTGTATTGGT+GGG - chr6_4:11219103-11219122 None:intergenic 30.0%
GATGCAATAGCAATTTGTAT+TGG - chr6_4:11219107-11219126 None:intergenic 30.0%
! TTATGGGAAATTGATGGTTA+TGG - chr6_4:11219350-11219369 None:intergenic 30.0%
CTTAATGGTTAGAGACATTA+TGG - chr6_4:11219367-11219386 None:intergenic 30.0%
AAAGTTAAGAGAAGAATGCA+CGG + chr6_4:11219543-11219562 Msa0976950:CDS 30.0%
ATTGGATCTTCTTCTAATGT+TGG + chr6_4:11219876-11219895 Msa0976950:CDS 30.0%
TTGGATCTTCTTCTAATGTT+GGG + chr6_4:11219877-11219896 Msa0976950:CDS 30.0%
!! TCTTTCTGGCATTAATTTTG+TGG + chr6_4:11219954-11219973 Msa0976950:intron 30.0%
!!! CACGAAATTTTTTTATAGCC+CGG + chr6_4:11220358-11220377 Msa0976950:intron 30.0%
!!! ACGAAATTTTTTTATAGCCC+GGG + chr6_4:11220359-11220378 Msa0976950:intron 30.0%
GACTGTCTATTTCATTATGT+TGG + chr6_4:11220483-11220502 Msa0976950:intron 30.0%
GTGAAAGAGTTAGAAGATAA+TGG + chr6_4:11220514-11220533 Msa0976950:intron 30.0%
CAGTAAGTTTGATGAAATCA+TGG + chr6_4:11220752-11220771 Msa0976950:intron 30.0%
! CTGTAGCTTTTGATAAAATC+AGG + chr6_4:11220803-11220822 Msa0976950:intron 30.0%
TCTTCAATTCAGTGTATGTT+AGG - chr6_4:11220865-11220884 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr6_4:11220931-11220950 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr6_4:11220932-11220951 Msa0976950:intron 30.0%
! GTAGTGTGCAAAGTATTAAT+TGG + chr6_4:11221062-11221081 Msa0976950:intron 30.0%
! TGTGCAAAGTATTAATTGGA+GGG + chr6_4:11221066-11221085 Msa0976950:intron 30.0%
AGGGTACAATTGAAAAGAAA+AGG + chr6_4:11221085-11221104 Msa0976950:intron 30.0%
ATTTAAGTAAACTCCTGTCA+TGG + chr6_4:11221521-11221540 Msa0976950:intron 30.0%
GAAGTGAAATTAATGGTCAT+TGG - chr6_4:11221572-11221591 None:intergenic 30.0%
CTGCAAAGAAGTGAAATTAA+TGG - chr6_4:11221579-11221598 None:intergenic 30.0%
TTAAGAAATCCTGTGCATAA+CGG + chr6_4:11221840-11221859 Msa0976950:CDS 30.0%
ACGAGTATCATTCATTAACA+AGG - chr6_4:11221871-11221890 None:intergenic 30.0%
ATGCTAAAAAAATAGGACCT+TGG + chr6_4:11222261-11222280 Msa0976950:intron 30.0%
AATTTAAACGTACAGCAAAC+AGG - chr6_4:11222499-11222518 None:intergenic 30.0%
AAGAACATATCTCATATTGG+AGG - chr6_4:11222870-11222889 None:intergenic 30.0%
!! TTGACTTGGATCTGTTTATA+CGG - chr6_4:11222919-11222938 None:intergenic 30.0%
TCGCATGCTATTATAATCTT+CGG + chr6_4:11222988-11223007 Msa0976950:intron 30.0%
!!! TTCAGCTTTTATCGATTTTG+AGG - chr6_4:11223030-11223049 None:intergenic 30.0%
CTGCAACCTGTATTATAAAA+TGG - chr6_4:11223253-11223272 None:intergenic 30.0%
TAAAGAGGAAATCTTTAGCA+CGG - chr6_4:11223319-11223338 None:intergenic 30.0%
TGATTGAGAATATGATACCT+TGG - chr6_4:11223351-11223370 None:intergenic 30.0%
!!! CGGAACCAATTTTTTTAGAT+TGG - chr6_4:11223817-11223836 None:intergenic 30.0%
! CTAAAAAAATTGGTTCCGTT+CGG + chr6_4:11223819-11223838 Msa0976950:intron 30.0%
TTAAATTCGACACTGTTAAG+AGG - chr6_4:11224263-11224282 None:intergenic 30.0%
! TAACATCAAGTTGTAACCTT+TGG + chr6_4:11224412-11224431 Msa0976950:intron 30.0%
CTGAAAAAACAAATCACCAA+AGG - chr6_4:11224431-11224450 None:intergenic 30.0%
!!! GTGATTTGTTTTTTCAGATG+AGG + chr6_4:11224434-11224453 Msa0976950:intron 30.0%
TATGTCTAAGAAGATAACAC+AGG - chr6_4:11224571-11224590 None:intergenic 30.0%
ACACTATCTACTAGAACTTA+TGG - chr6_4:11224995-11225014 None:intergenic 30.0%
AGAATATTGGACTGAAAAGG+AGG - chr6_4:11219017-11219036 None:intergenic 35.0%
GTGAGAATATTGGACTGAAA+AGG - chr6_4:11219020-11219039 None:intergenic 35.0%
ATATGAATTGGGACTGAAAG+TGG - chr6_4:11219049-11219068 None:intergenic 35.0%
!! CATCTTTTTGGCACCAATTA+TGG + chr6_4:11219076-11219095 Msa0976950:five_prime_UTR 35.0%
GCAATAGCAATTTGTATTGG+TGG - chr6_4:11219104-11219123 None:intergenic 35.0%
ATAACAACCACCTATGACTA+TGG - chr6_4:11219230-11219249 None:intergenic 35.0%
! GAAATTGATGGTTATGGTGT+TGG - chr6_4:11219344-11219363 None:intergenic 35.0%
GAGACATTATGGGAAATTGA+TGG - chr6_4:11219356-11219375 None:intergenic 35.0%
! TTTCTTCCAAAACCCACTTT+TGG + chr6_4:11219483-11219502 Msa0976950:CDS 35.0%
!! TTGTTACCAAAAGTGGGTTT+TGG - chr6_4:11219492-11219511 None:intergenic 35.0%
GGGTGTATTAGTAGATCTTA+TGG + chr6_4:11219605-11219624 Msa0976950:CDS 35.0%
! TCCTTTGAAAGGTTTCATGA+GGG + chr6_4:11219740-11219759 Msa0976950:CDS 35.0%
!! AATTCACTTAGGTTGAAGGA+TGG + chr6_4:11219792-11219811 Msa0976950:CDS 35.0%
GATGAGACTAAAGAGAGAAT+TGG + chr6_4:11219858-11219877 Msa0976950:CDS 35.0%
!! TCTTCTAATGTTGGGTTGAT+TGG + chr6_4:11219885-11219904 Msa0976950:CDS 35.0%
ATACCAACAATATCTCCATC+AGG - chr6_4:11219912-11219931 None:intergenic 35.0%
GGTTAGTATAGTCTTCTTTC+TGG + chr6_4:11219940-11219959 Msa0976950:intron 35.0%
GGTTATTGGTATTACCTAGT+TGG + chr6_4:11220044-11220063 Msa0976950:intron 35.0%
ATGACTTCAACCTGAAATGT+CGG + chr6_4:11220217-11220236 Msa0976950:intron 35.0%
GCTATATAGGTCACGATATT+TGG + chr6_4:11220241-11220260 Msa0976950:intron 35.0%
CATTAAAAACCTTGATGTCG+AGG + chr6_4:11220322-11220341 Msa0976950:intron 35.0%
GACTTTGTCAACGAATTCAT+AGG + chr6_4:11220676-11220695 Msa0976950:intron 35.0%
! CTTTTATCACCTTCCAATTG+AGG - chr6_4:11220710-11220729 None:intergenic 35.0%
CTCAATTGGAAGGTGATAAA+AGG + chr6_4:11220708-11220727 Msa0976950:intron 35.0%
! AGCTTTTGATAAAATCAGGG+CGG + chr6_4:11220807-11220826 Msa0976950:intron 35.0%
CCATAAGTTTGGCAAAATCA+AGG - chr6_4:11220837-11220856 None:intergenic 35.0%
! CCTTGATTTTGCCAAACTTA+TGG + chr6_4:11220834-11220853 Msa0976950:intron 35.0%
GTTAGGATTGACCATAAGTT+TGG - chr6_4:11220848-11220867 None:intergenic 35.0%
! GTGTGCAAAGTATTAATTGG+AGG + chr6_4:11221065-11221084 Msa0976950:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr6_4:11221130-11221149 Msa0976950:intron 35.0%
TTTCACACATCTCACATACA+TGG + chr6_4:11221214-11221233 Msa0976950:intron 35.0%
GAAATTGAACTATAACTCGG+AGG - chr6_4:11221356-11221375 None:intergenic 35.0%
ATCTCAGTTCATGGTTTAAC+TGG + chr6_4:11221444-11221463 Msa0976950:intron 35.0%
TGAACATGTAAACAAACGGA+CGG - chr6_4:11221475-11221494 None:intergenic 35.0%
AAGAAAGAATAGCTAGAACC+TGG + chr6_4:11221625-11221644 Msa0976950:CDS 35.0%
AGAAAGAATAGCTAGAACCT+GGG + chr6_4:11221626-11221645 Msa0976950:CDS 35.0%
AGACCGTCATTGTATTTGAT+AGG - chr6_4:11221741-11221760 None:intergenic 35.0%
AACTTCGGGAAGAATTTGAT+AGG + chr6_4:11221787-11221806 Msa0976950:CDS 35.0%
CACAGGATTTCTTAACTGAA+AGG - chr6_4:11221835-11221854 None:intergenic 35.0%
AGAGGGTGAAGCAATAAAAT+CGG - chr6_4:11221924-11221943 None:intergenic 35.0%
! ATTTTATTGCTTCACCCTCT+TGG + chr6_4:11221924-11221943 Msa0976950:CDS 35.0%
CGCCATATGAGAAAAAATGA+TGG - chr6_4:11222015-11222034 None:intergenic 35.0%
AAAAAATAGGACCTTGGAAG+TGG + chr6_4:11222267-11222286 Msa0976950:intron 35.0%
CTATTTGAGAAGTTCAACTG+TGG + chr6_4:11222428-11222447 Msa0976950:intron 35.0%
! TGGTTAAACTGCTTTAAACC+AGG - chr6_4:11222460-11222479 None:intergenic 35.0%
AGCAAACAGGAAAGATCTAT+AGG - chr6_4:11222486-11222505 None:intergenic 35.0%
ATAGAAACTATGGTTGTCTC+AGG - chr6_4:11222598-11222617 None:intergenic 35.0%
! AGCTTAACATTTTGCCATTC+AGG + chr6_4:11222809-11222828 Msa0976950:CDS 35.0%
! GCTTAACATTTTGCCATTCA+GGG + chr6_4:11222810-11222829 Msa0976950:CDS 35.0%
TAATAGCATGCGATTCAGTT+CGG - chr6_4:11222981-11223000 None:intergenic 35.0%
AAAAATGGACAGCATTGTGA+GGG - chr6_4:11223064-11223083 None:intergenic 35.0%
AAAAAATGGACAGCATTGTG+AGG - chr6_4:11223065-11223084 None:intergenic 35.0%
ACACCATGTATCCTATTGTT+GGG + chr6_4:11223105-11223124 Msa0976950:intron 35.0%
TGACACTAAGGTAAACAAGA+TGG + chr6_4:11223277-11223296 Msa0976950:CDS 35.0%
! TTTTGGACATTGACACTTCT+CGG + chr6_4:11223752-11223771 Msa0976950:intron 35.0%
ATGTTCAAGACATGTCTAAC+AGG - chr6_4:11223847-11223866 None:intergenic 35.0%
! ATGAGGTCTTATGCAAAAAG+TGG + chr6_4:11224451-11224470 Msa0976950:CDS 35.0%
GGAAGACCATGCATAAAAAT+TGG - chr6_4:11224669-11224688 None:intergenic 35.0%
CAACATCTCGATCAAGAATT+CGG + chr6_4:11224688-11224707 Msa0976950:three_prime_UTR 35.0%
AAACAAGGCCTAAACTCATT+AGG - chr6_4:11224767-11224786 None:intergenic 35.0%
!! TAATGAGTTTAGGCCTTGTT+TGG + chr6_4:11224766-11224785 Msa0976950:three_prime_UTR 35.0%
! TGTATTGGTGGGACCATAAT+TGG - chr6_4:11219092-11219111 None:intergenic 40.0%
TTGTGTGGATGAGAAAAGTG+TGG - chr6_4:11219151-11219170 None:intergenic 40.0%
! TGGATTGGATTCACAAGAAG+TGG - chr6_4:11219198-11219217 None:intergenic 40.0%
TATGACTATGGCGAACATGT+TGG - chr6_4:11219218-11219237 None:intergenic 40.0%
AACATGTTCGCCATAGTCAT+AGG + chr6_4:11219217-11219236 Msa0976950:five_prime_UTR 40.0%
AGAGAGAAAGAGAAGAACGT+GGG - chr6_4:11219319-11219338 None:intergenic 40.0%
AGCTCTTTGATAGAACCAGA+TGG + chr6_4:11219582-11219601 Msa0976950:CDS 40.0%
GCTCTTTGATAGAACCAGAT+GGG + chr6_4:11219583-11219602 Msa0976950:CDS 40.0%
CTCTTTGATAGAACCAGATG+GGG + chr6_4:11219584-11219603 Msa0976950:CDS 40.0%
TCTTTGATAGAACCAGATGG+GGG + chr6_4:11219585-11219604 Msa0976950:CDS 40.0%
TATGAATGGGTGCATGTGAT+TGG + chr6_4:11219702-11219721 Msa0976950:CDS 40.0%
! GTCCTTTGAAAGGTTTCATG+AGG + chr6_4:11219739-11219758 Msa0976950:CDS 40.0%
TCCCTCATGAAACCTTTCAA+AGG - chr6_4:11219744-11219763 None:intergenic 40.0%
!! CTATATAGCACCGACATTTC+AGG - chr6_4:11220230-11220249 None:intergenic 40.0%
!! CTGAAATGTCGGTGCTATAT+AGG + chr6_4:11220228-11220247 Msa0976950:intron 40.0%
TTTGACATCAATTGCGGTCA+TGG + chr6_4:11220296-11220315 Msa0976950:intron 40.0%
ATAGGTCCAAGAACCTCAAT+TGG + chr6_4:11220694-11220713 Msa0976950:intron 40.0%
! GCTTTTGATAAAATCAGGGC+GGG + chr6_4:11220808-11220827 Msa0976950:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr6_4:11221170-11221189 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr6_4:11221170-11221189 Msa0976950:intron 40.0%
GAAAGAATAGCTAGAACCTG+GGG + chr6_4:11221627-11221646 Msa0976950:CDS 40.0%
! ATGACGGTCTTGATAACTAC+AGG + chr6_4:11221751-11221770 Msa0976950:CDS 40.0%
AATTCTTCCCGAAGTTGCTT+GGG - chr6_4:11221783-11221802 None:intergenic 40.0%
AAATTCTTCCCGAAGTTGCT+TGG - chr6_4:11221784-11221803 None:intergenic 40.0%
TCGTCAACGTCTATTAGACA+TGG + chr6_4:11221887-11221906 Msa0976950:CDS 40.0%
CGTCAACGTCTATTAGACAT+GGG + chr6_4:11221888-11221907 Msa0976950:CDS 40.0%
AAACCTCTACTCTATAGCAC+CGG - chr6_4:11222065-11222084 None:intergenic 40.0%
TTACAGTTCATCCACTTCCA+AGG - chr6_4:11222281-11222300 None:intergenic 40.0%
ATCAAACCAAACTGTTCCAC+TGG + chr6_4:11222372-11222391 Msa0976950:intron 40.0%
CAGGAAAGATCTATAGGTCA+TGG - chr6_4:11222480-11222499 None:intergenic 40.0%
TGTTCATAGGTCCTAGAAGA+TGG + chr6_4:11222562-11222581 Msa0976950:intron 40.0%
GATCAAGAACTCCATCTTCT+AGG - chr6_4:11222576-11222595 None:intergenic 40.0%
TGACCCTGATCATGGAAAAA+AGG + chr6_4:11222759-11222778 Msa0976950:CDS 40.0%
!!! GCACCTTTTTTCCATGATCA+GGG - chr6_4:11222765-11222784 None:intergenic 40.0%
!!! AGCACCTTTTTTCCATGATC+AGG - chr6_4:11222766-11222785 None:intergenic 40.0%
!! TGGAAAAAAGGTGCTTAGCA+TGG + chr6_4:11222771-11222790 Msa0976950:CDS 40.0%
ATGTTAAGCTTCTCAAGACC+AGG - chr6_4:11222799-11222818 None:intergenic 40.0%
GCAATACTACTTACCCTGAA+TGG - chr6_4:11222826-11222845 None:intergenic 40.0%
AAAATGGACAGCATTGTGAG+GGG - chr6_4:11223063-11223082 None:intergenic 40.0%
CACACCATGTATCCTATTGT+TGG + chr6_4:11223104-11223123 Msa0976950:intron 40.0%
CACCATGTATCCTATTGTTG+GGG + chr6_4:11223106-11223125 Msa0976950:intron 40.0%
ATCCCCAACAATAGGATACA+TGG - chr6_4:11223111-11223130 None:intergenic 40.0%
ATGTATCCTATTGTTGGGGA+TGG + chr6_4:11223110-11223129 Msa0976950:intron 40.0%
CCTTGGTTCCAGATATAAAG+AGG - chr6_4:11223334-11223353 None:intergenic 40.0%
! CCTCTTTATATCTGGAACCA+AGG + chr6_4:11223331-11223350 Msa0976950:CDS 40.0%
AGGTTTACAATGACAGATCC+TGG + chr6_4:11223451-11223470 Msa0976950:intron 40.0%
! AGGTGTCTGACATGTTTTCA+AGG - chr6_4:11223783-11223802 None:intergenic 40.0%
TTGAACATGCACCAAGAGAA+TGG + chr6_4:11223859-11223878 Msa0976950:intron 40.0%
TGAACATGCACCAAGAGAAT+GGG + chr6_4:11223860-11223879 Msa0976950:intron 40.0%
!! ACCTCTCCAAAGTGTTGTTT+CGG + chr6_4:11224176-11224195 Msa0976950:intron 40.0%
! AAGGTGTGTCTGAAAAGTGT+CGG - chr6_4:11224224-11224243 None:intergenic 40.0%
CAAGAACTTTCCATCCACTT+GGG - chr6_4:11224504-11224523 None:intergenic 40.0%
ACAAGAACTTTCCATCCACT+TGG - chr6_4:11224505-11224524 None:intergenic 40.0%
!! GGAGTGCCAATTTTTATGCA+TGG + chr6_4:11224660-11224679 Msa0976950:three_prime_UTR 40.0%
CGAATTCTTGATCGAGATGT+TGG - chr6_4:11224690-11224709 None:intergenic 40.0%
CTATGGCGAACATGTTGGAT+TGG - chr6_4:11219213-11219232 None:intergenic 45.0%
ATGTTCGCCATAGTCATAGG+TGG + chr6_4:11219220-11219239 Msa0976950:five_prime_UTR 45.0%
AGAGAAAGAGAAGAACGTGG+GGG - chr6_4:11219317-11219336 None:intergenic 45.0%
GAGAGAAAGAGAAGAACGTG+GGG - chr6_4:11219318-11219337 None:intergenic 45.0%
GAGAGAGAAAGAGAAGAACG+TGG - chr6_4:11219320-11219339 None:intergenic 45.0%
TCTACTAATACACCCCCATC+TGG - chr6_4:11219600-11219619 None:intergenic 45.0%
TGCATGTGATTGGTGAAGGT+TGG + chr6_4:11219712-11219731 Msa0976950:CDS 45.0%
GCATGTGATTGGTGAAGGTT+GGG + chr6_4:11219713-11219732 Msa0976950:CDS 45.0%
GGACCTGATGGAGATATTGT+TGG + chr6_4:11219906-11219925 Msa0976950:CDS 45.0%
CAATTTGAGCCTCGACATCA+AGG - chr6_4:11220334-11220353 None:intergenic 45.0%
GTCCAAGAACCTCAATTGGA+AGG + chr6_4:11220698-11220717 Msa0976950:intron 45.0%
CACCTTCCAATTGAGGTTCT+TGG - chr6_4:11220703-11220722 None:intergenic 45.0%
GGCTGAGTACATGTTTCGAT+TGG + chr6_4:11220729-11220748 Msa0976950:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr6_4:11221169-11221188 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr6_4:11221169-11221188 Msa0976950:intron 45.0%
TTGAACCGGACATCAAACTG+AGG + chr6_4:11221327-11221346 Msa0976950:intron 45.0%
!! TGTCTCCGGTTCGGTAATTT+GGG - chr6_4:11221424-11221443 None:intergenic 45.0%
!! TTGTCTCCGGTTCGGTAATT+TGG - chr6_4:11221425-11221444 None:intergenic 45.0%
AACTGAGATTGTCTCCGGTT+CGG - chr6_4:11221433-11221452 None:intergenic 45.0%
CCATGAACTGAGATTGTCTC+CGG - chr6_4:11221438-11221457 None:intergenic 45.0%
GAAAACTCAGACACCATGAC+AGG - chr6_4:11221537-11221556 None:intergenic 45.0%
TCCAGGATTGCCTTATGTTG+AGG + chr6_4:11221659-11221678 Msa0976950:CDS 45.0%
TCCTCAACATAAGGCAATCC+TGG - chr6_4:11221663-11221682 None:intergenic 45.0%
AGGATTGCCTTATGTTGAGG+AGG + chr6_4:11221662-11221681 Msa0976950:CDS 45.0%
GCAATGACCTCCTCAACATA+AGG - chr6_4:11221672-11221691 None:intergenic 45.0%
TCATTGCTCCAGCTGGAAAT+TGG + chr6_4:11221685-11221704 Msa0976950:CDS 45.0%
! CCAGCTGGAAATTGGCTTAT+CGG + chr6_4:11221693-11221712 Msa0976950:CDS 45.0%
TTGGCTTATCGGAGGAGATT+TGG + chr6_4:11221704-11221723 Msa0976950:CDS 45.0%
TTATTGCTTCACCCTCTTGG+AGG + chr6_4:11221927-11221946 Msa0976950:CDS 45.0%
CCTTTGTGAAACCTCCAAGA+GGG - chr6_4:11221941-11221960 None:intergenic 45.0%
ACCTTTGTGAAACCTCCAAG+AGG - chr6_4:11221942-11221961 None:intergenic 45.0%
TGCTCCATCCTGACATCTAA+CGG - chr6_4:11221975-11221994 None:intergenic 45.0%
!! ATACCGGTGCTATAGAGTAG+AGG + chr6_4:11222059-11222078 Msa0976950:intron 45.0%
GCTATGCAACAGTTCTACAG+CGG - chr6_4:11222157-11222176 None:intergenic 45.0%
ACTCAACCAGTGGAACAGTT+TGG - chr6_4:11222381-11222400 None:intergenic 45.0%
TTGTGATCGAGAACTGTCTG+TGG + chr6_4:11222400-11222419 Msa0976950:intron 45.0%
CCTGCATAATGCATAGGTGA+TGG - chr6_4:11222625-11222644 None:intergenic 45.0%
CCATCACCTATGCATTATGC+AGG + chr6_4:11222622-11222641 Msa0976950:CDS 45.0%
GTTGGACCTGCATAATGCAT+AGG - chr6_4:11222631-11222650 None:intergenic 45.0%
CAGGTCCAACTGAAGTTCAA+TGG + chr6_4:11222641-11222660 Msa0976950:CDS 45.0%
GCATGCCATTGAACTTCAGT+TGG - chr6_4:11222649-11222668 None:intergenic 45.0%
TGAAGTTCAATGGCATGCGA+AGG + chr6_4:11222651-11222670 Msa0976950:CDS 45.0%
GGCGCCAACTTCTATATTGT+TGG + chr6_4:11222688-11222707 Msa0976950:CDS 45.0%
GCGGCCAACAATATAGAAGT+TGG - chr6_4:11222695-11222714 None:intergenic 45.0%
TGGGTCATCCAACTGAGAAA+CGG + chr6_4:11222728-11222747 Msa0976950:CDS 45.0%
TACAAGTCCCGTTTCTCAGT+TGG - chr6_4:11222739-11222758 None:intergenic 45.0%
GACTTGTATGACCCTGATCA+TGG + chr6_4:11222751-11222770 Msa0976950:CDS 45.0%
!! CGTTGAAGTGCTGTTTGACT+TGG - chr6_4:11222933-11222952 None:intergenic 45.0%
AAATGGACAGCATTGTGAGG+GGG - chr6_4:11223062-11223081 None:intergenic 45.0%
CATTTGCCATCCCCAACAAT+AGG - chr6_4:11223119-11223138 None:intergenic 45.0%
CTATTGTTGGGGATGGCAAA+TGG + chr6_4:11223117-11223136 Msa0976950:intron 45.0%
GGTTGCAGCTTATGACACTA+AGG + chr6_4:11223265-11223284 Msa0976950:intron 45.0%
GGAAATCTTTAGCACGGCTA+GGG - chr6_4:11223313-11223332 None:intergenic 45.0%
AGGAAATCTTTAGCACGGCT+AGG - chr6_4:11223314-11223333 None:intergenic 45.0%
TAAAGCAAGACGTAGGAACC+AGG - chr6_4:11223472-11223491 None:intergenic 45.0%
GCTGTGATAAAGCAAGACGT+AGG - chr6_4:11223479-11223498 None:intergenic 45.0%
!! GAGAGGTGTTTGTGCTTCTT+AGG - chr6_4:11223703-11223722 None:intergenic 45.0%
! TCGGCGTGTCATACACATTT+TGG + chr6_4:11223735-11223754 Msa0976950:intron 45.0%
! ACCGAAACAACACTTTGGAG+AGG - chr6_4:11224180-11224199 None:intergenic 45.0%
GACACACCGAAACAACACTT+TGG - chr6_4:11224185-11224204 None:intergenic 45.0%
TCGGTGTGTCAGACACATTT+CGG + chr6_4:11224195-11224214 Msa0976950:intron 45.0%
AGGTGTCTAACATGCGTTGA+AGG - chr6_4:11224243-11224262 None:intergenic 45.0%
GTGTTGAAGACATGTCTAGC+AGG - chr6_4:11224307-11224326 None:intergenic 45.0%
TTCAACACGCACTAAGAGAC+TGG + chr6_4:11224319-11224338 Msa0976950:intron 45.0%
TCAACACGCACTAAGAGACT+GGG + chr6_4:11224320-11224339 Msa0976950:intron 45.0%
CTTGGGCACATAAATCCATC+TGG - chr6_4:11224487-11224506 None:intergenic 45.0%
! GATGGATTTATGTGCCCAAG+TGG + chr6_4:11224487-11224506 Msa0976950:CDS 45.0%
GATTTATGTGCCCAAGTGGA+TGG + chr6_4:11224491-11224510 Msa0976950:CDS 45.0%
!!! ATAATTTTAGATTAATTTAA+TGG + chr6_4:11220022-11220041 Msa0976950:intron 5.0%
!!! TAATTTTAGATTAATTTAAT+GGG + chr6_4:11220023-11220042 Msa0976950:intron 5.0%
!!! ATTATATGATTTTTTTTTTA+CGG + chr6_4:11220384-11220403 Msa0976950:intron 5.0%
GTGGAGCAGGGTGAGAATAT+TGG - chr6_4:11219030-11219049 None:intergenic 50.0%
TTGGGACTGAAAGTGGAGCA+GGG - chr6_4:11219042-11219061 None:intergenic 50.0%
ATTGGGACTGAAAGTGGAGC+AGG - chr6_4:11219043-11219062 None:intergenic 50.0%
TGGGTGCATGTGATTGGTGA+AGG + chr6_4:11219708-11219727 Msa0976950:CDS 50.0%
!! GGTTGGGCTAGTCCTTTGAA+AGG + chr6_4:11219729-11219748 Msa0976950:CDS 50.0%
!! GTTGGGTTGATTGGACCTGA+TGG + chr6_4:11219894-11219913 Msa0976950:CDS 50.0%
GGTCTCCTCAGTTTGATGTC+CGG - chr6_4:11221335-11221354 None:intergenic 50.0%
!! GTTCGGTAATTTGGGTTGGG+AGG - chr6_4:11221416-11221435 None:intergenic 50.0%
!! CCGGTTCGGTAATTTGGGTT+GGG - chr6_4:11221419-11221438 None:intergenic 50.0%
CCCAACCCAAATTACCGAAC+CGG + chr6_4:11221416-11221435 Msa0976950:intron 50.0%
!! TCCGGTTCGGTAATTTGGGT+TGG - chr6_4:11221420-11221439 None:intergenic 50.0%
CCGGAGACAATCTCAGTTCA+TGG + chr6_4:11221435-11221454 Msa0976950:intron 50.0%
CCGATAAGCCAATTTCCAGC+TGG - chr6_4:11221696-11221715 None:intergenic 50.0%
! GCTGGAAATTGGCTTATCGG+AGG + chr6_4:11221696-11221715 Msa0976950:CDS 50.0%
GGCTATCTCCCAAGCAACTT+CGG + chr6_4:11221772-11221791 Msa0976950:CDS 50.0%
GCTATCTCCCAAGCAACTTC+GGG + chr6_4:11221773-11221792 Msa0976950:CDS 50.0%
AAGGCATGACCGTTATGCAC+AGG - chr6_4:11221852-11221871 None:intergenic 50.0%
CCCTCTTGGAGGTTTCACAA+AGG + chr6_4:11221938-11221957 Msa0976950:CDS 50.0%
ACGACGTTCCGTTAGATGTC+AGG + chr6_4:11221964-11221983 Msa0976950:CDS 50.0%
CGTTCCGTTAGATGTCAGGA+TGG + chr6_4:11221968-11221987 Msa0976950:CDS 50.0%
CAGGATGGAGCAACATAGCA+AGG + chr6_4:11221983-11222002 Msa0976950:CDS 50.0%
!! GCGCTATTTTCCGCAATCTG+CGG + chr6_4:11222193-11222212 Msa0976950:intron 50.0%
CTCGATCACAACTCAACCAG+TGG - chr6_4:11222391-11222410 None:intergenic 50.0%
GTTCAACTGTGGTTTCGTCC+TGG + chr6_4:11222439-11222458 Msa0976950:intron 50.0%
TTCAATGGCATGCGAAGGCA+CGG + chr6_4:11222656-11222675 Msa0976950:CDS 50.0%
AGTTGGATGACCCATACCAG+CGG - chr6_4:11222722-11222741 None:intergenic 50.0%
GGGTCATCCAACTGAGAAAC+GGG + chr6_4:11222729-11222748 Msa0976950:CDS 50.0%
!! ACCTCTCCAGAGTGTTGTGT+CGG + chr6_4:11223716-11223735 Msa0976950:intron 50.0%
!! GAGAGGTGTTTGTGCTTCTG+AGG - chr6_4:11224163-11224182 None:intergenic 50.0%
AGTGGAGAGAATCCACCAGA+TGG + chr6_4:11224469-11224488 Msa0976950:CDS 50.0%
GGGCACATAAATCCATCTGG+TGG - chr6_4:11224484-11224503 None:intergenic 50.0%
! TGGGTTGGGAGGTTCAACTG+CGG - chr6_4:11221405-11221424 None:intergenic 55.0%
CTGCTGTCAACCGCAGATTG+CGG - chr6_4:11222206-11222225 None:intergenic 55.0%
CAATCTGCGGTTGACAGCAG+TGG + chr6_4:11222206-11222225 Msa0976950:intron 55.0%
! GCGAAGGCACGGATAAATGC+AGG + chr6_4:11222667-11222686 Msa0976950:CDS 55.0%
GTTGGATGACCCATACCAGC+GGG - chr6_4:11222721-11222740 None:intergenic 55.0%
! AAGGTGCTTAGCATGGCTCC+TGG + chr6_4:11222778-11222797 Msa0976950:CDS 55.0%
!! CATGTCTAACAGGCGCCGAA+CGG - chr6_4:11223837-11223856 None:intergenic 55.0%
!! TAAGGGCACTGACCAGGCAT+CGG - chr6_4:11223886-11223905 None:intergenic 55.0%
!! CGATCTTAAGGGCACTGACC+AGG - chr6_4:11223892-11223911 None:intergenic 55.0%
ACCTGGGGAACAACTGCTCC+AGG + chr6_4:11221642-11221661 Msa0976950:CDS 60.0%
TCCTGGAGCAGTTGTTCCCC+AGG - chr6_4:11221646-11221665 None:intergenic 60.0%
GAGGAGGTCATTGCTCCAGC+TGG + chr6_4:11221678-11221697 Msa0976950:CDS 60.0%
! GCCGACACAACACTCTGGAG+AGG - chr6_4:11223720-11223739 None:intergenic 60.0%
GACACGCCGACACAACACTC+TGG - chr6_4:11223725-11223744 None:intergenic 60.0%
!! CAGGCATCGGCCCATTCTCT+TGG - chr6_4:11223873-11223892 None:intergenic 60.0%
CAAGAGAATGGGCCGATGCC+TGG + chr6_4:11223871-11223890 Msa0976950:intron 60.0%
TAAGAGACTGGGCCGACACC+TGG + chr6_4:11224331-11224350 Msa0976950:intron 60.0%
ATTGTTGGCCGCGATCCCGC+TGG + chr6_4:11222703-11222722 Msa0976950:CDS 65.0%
GACCCATACCAGCGGGATCG+CGG - chr6_4:11222714-11222733 None:intergenic 65.0%
ACTGGGCCGACACCTGGTCA+GGG + chr6_4:11224337-11224356 Msa0976950:intron 65.0%
CTGAGCCCCTGACCAGGTGT+CGG - chr6_4:11224346-11224365 None:intergenic 65.0%
GACACCTGGTCAGGGGCTCA+GGG + chr6_4:11224345-11224364 Msa0976950:intron 65.0%
TGGCCGCGATCCCGCTGGTA+TGG + chr6_4:11222708-11222727 Msa0976950:CDS 70.0%
GGCCGCGATCCCGCTGGTAT+GGG + chr6_4:11222709-11222728 Msa0976950:CDS 70.0%
GACTGGGCCGACACCTGGTC+AGG + chr6_4:11224336-11224355 Msa0976950:intron 70.0%
CTGGGCCGACACCTGGTCAG+GGG + chr6_4:11224338-11224357 Msa0976950:intron 70.0%
CGACACCTGGTCAGGGGCTC+AGG + chr6_4:11224344-11224363 Msa0976950:intron 70.0%
AGGGCCCTGAGCCCCTGACC+AGG - chr6_4:11224352-11224371 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 11218923 11225058 11218923 ID=Msa0976950;Name=Msa0976950
chr6_4 mRNA 11218923 11225058 11218923 ID=Msa0976950-mRNA-1;Parent=Msa0976950;Name=Msa0976950-mRNA-1;_AED=0.02;_eAED=0.02;_QI=446|1|1|1|1|1|5|473|486
chr6_4 exon 11218923 11219940 11218923 ID=Msa0976950-mRNA-1:exon:4064;Parent=Msa0976950-mRNA-1
chr6_4 exon 11221599 11222004 11221599 ID=Msa0976950-mRNA-1:exon:4065;Parent=Msa0976950-mRNA-1
chr6_4 exon 11222571 11222831 11222571 ID=Msa0976950-mRNA-1:exon:4066;Parent=Msa0976950-mRNA-1
chr6_4 exon 11223266 11223352 11223266 ID=Msa0976950-mRNA-1:exon:4067;Parent=Msa0976950-mRNA-1
chr6_4 exon 11224451 11225058 11224451 ID=Msa0976950-mRNA-1:exon:4068;Parent=Msa0976950-mRNA-1
chr6_4 five_prime_UTR 11218923 11219368 11218923 ID=Msa0976950-mRNA-1:five_prime_utr;Parent=Msa0976950-mRNA-1
chr6_4 CDS 11219369 11219940 11219369 ID=Msa0976950-mRNA-1:cds;Parent=Msa0976950-mRNA-1
chr6_4 CDS 11221599 11222004 11221599 ID=Msa0976950-mRNA-1:cds;Parent=Msa0976950-mRNA-1
chr6_4 CDS 11222571 11222831 11222571 ID=Msa0976950-mRNA-1:cds;Parent=Msa0976950-mRNA-1
chr6_4 CDS 11223266 11223352 11223266 ID=Msa0976950-mRNA-1:cds;Parent=Msa0976950-mRNA-1
chr6_4 CDS 11224451 11224585 11224451 ID=Msa0976950-mRNA-1:cds;Parent=Msa0976950-mRNA-1
chr6_4 three_prime_UTR 11224586 11225058 11224586 ID=Msa0976950-mRNA-1:three_prime_utr;Parent=Msa0976950-mRNA-1
Gene Sequence

>Msa0976950

ATGTCTCTAACCATTAAGTTACAATTAGTTTCTCATCCTAACATCAATCACAACAAAAACCATGCAAACAAATTAATCAAAAACAAAAACAACACTTTTGGTAACATTTTAAAGTTTCTTCCAAAACCCACTTTTGGTAACAATTCATTAACTGTTACTAAAAGGTATAATAACAAAGTTAAGAGAAGAATGCACGGAAATTTCATGATCAAAAGCTCTTTGATAGAACCAGATGGGGGTGTATTAGTAGATCTTATGGTGCCTGAAAATGAAAGAGAATCTAAGGTACTTGAAGCTAAGTCACTTCCTAATGTGAAACTAACAAAAGTTGATTATGAATGGGTGCATGTGATTGGTGAAGGTTGGGCTAGTCCTTTGAAAGGTTTCATGAGGGAAAATGAATATCTTCAAAGTTTGCATTTTAATTCACTTAGGTTGAAGGATGGTTCTTTTGTTAATATGTCACTTCCTATTGTTTTGTCTATTGATGATGAGACTAAAGAGAGAATTGGATCTTCTTCTAATGTTGGGTTGATTGGACCTGATGGAGATATTGTTGGTATTCTTAGAAGCATTGAAATCTACAAGCATAACAAAGAAGAAAGAATAGCTAGAACCTGGGGAACAACTGCTCCAGGATTGCCTTATGTTGAGGAGGTCATTGCTCCAGCTGGAAATTGGCTTATCGGAGGAGATTTGGAAGTGCTAAAACCTATCAAATACAATGACGGTCTTGATAACTACAGGCTATCTCCCAAGCAACTTCGGGAAGAATTTGATAGGCGTAAAGCTGATGCAGTTTTTGCCTTTCAGTTAAGAAATCCTGTGCATAACGGTCATGCCTTGTTAATGAATGATACTCGTCAACGTCTATTAGACATGGGTTACAAAAATCCGATTTTATTGCTTCACCCTCTTGGAGGTTTCACAAAGGTTGACGACGTTCCGTTAGATGTCAGGATGGAGCAACATAGCAAGGTCCTAGAAGATGGAGTTCTTGATCCTGAGACAACCATAGTTTCTATATTTCCATCACCTATGCATTATGCAGGTCCAACTGAAGTTCAATGGCATGCGAAGGCACGGATAAATGCAGGCGCCAACTTCTATATTGTTGGCCGCGATCCCGCTGGTATGGGTCATCCAACTGAGAAACGGGACTTGTATGACCCTGATCATGGAAAAAAGGTGCTTAGCATGGCTCCTGGTCTTGAGAAGCTTAACATTTTGCCATTCAGGGTTGCAGCTTATGACACTAAGGTAAACAAGATGGCATTTTTCGACCCTAGCCGTGCTAAAGATTTCCTCTTTATATCTGGAACCAAGATGAGGTCTTATGCAAAAAGTGGAGAGAATCCACCAGATGGATTTATGTGCCCAAGTGGATGGAAAGTTCTTGTCAATTATTATGAAAGTTTGCAGACAGAAGAAGCATCACAACAGCCTGTGTTATCTTCTTAG

Protein sequence

>Msa0976950

MSLTIKLQLVSHPNINHNKNHANKLIKNKNNTFGNILKFLPKPTFGNNSLTVTKRYNNKVKRRMHGNFMIKSSLIEPDGGVLVDLMVPENERESKVLEAKSLPNVKLTKVDYEWVHVIGEGWASPLKGFMRENEYLQSLHFNSLRLKDGSFVNMSLPIVLSIDDETKERIGSSSNVGLIGPDGDIVGILRSIEIYKHNKEERIARTWGTTAPGLPYVEEVIAPAGNWLIGGDLEVLKPIKYNDGLDNYRLSPKQLREEFDRRKADAVFAFQLRNPVHNGHALLMNDTRQRLLDMGYKNPILLLHPLGGFTKVDDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGLEKLNILPFRVAAYDTKVNKMAFFDPSRAKDFLFISGTKMRSYAKSGENPPDGFMCPSGWKVLVNYYESLQTEEASQQPVLSS*