AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1306560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306560 MtrunA17_Chr8g0386971 93.805 113 7 0 1 113 1 113 2.80e-72 217
Msa1306560 MtrunA17_Chr1g0202891 71.681 113 32 0 1 113 1 113 5.48e-51 163
Msa1306560 MtrunA17_Chr1g0202931 69.027 113 35 0 1 113 1 113 7.58e-51 162
Msa1306560 MtrunA17_Chr1g0202871 69.912 113 34 0 1 113 1 113 3.22e-50 161
Msa1306560 MtrunA17_Chr1g0202861 65.487 113 39 0 1 113 42 154 2.64e-47 155
Msa1306560 MtrunA17_Chr6g0470321 66.667 105 35 0 9 113 17 121 9.69e-46 150
Msa1306560 MtrunA17_Chr6g0470501 67.308 104 34 0 10 113 37 140 8.90e-45 148
Msa1306560 MtrunA17_Chr7g0262941 54.128 109 50 0 5 113 10 118 1.55e-36 126
Msa1306560 MtrunA17_Chr1g0182541 53.211 109 51 0 5 113 10 118 3.24e-36 125
Msa1306560 MtrunA17_Chr3g0117241 46.957 115 58 1 2 113 7 121 3.54e-33 113
Msa1306560 MtrunA17_Chr4g0058731 48.696 115 56 1 2 113 18 132 3.47e-31 112
Msa1306560 MtrunA17_Chr8g0388831 49.558 113 56 1 2 113 7 119 5.05e-29 107
Msa1306560 MtrunA17_Chr1g0202911 47.297 74 39 0 33 106 4 77 7.75e-23 84.7
Msa1306560 MtrunA17_Chr6g0481311 43.333 90 45 1 30 113 62 151 2.07e-14 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306560 AT4G23430.4 66.372 113 38 0 1 113 1 113 2.04e-52 167
Msa1306560 AT4G23430.3 66.372 113 38 0 1 113 1 113 2.09e-52 167
Msa1306560 AT4G23430.2 66.372 113 38 0 1 113 1 113 3.17e-52 167
Msa1306560 AT4G23430.1 66.372 113 38 0 1 113 1 113 3.58e-52 166
Msa1306560 AT4G23420.5 66.372 113 38 0 1 113 1 113 4.02e-52 165
Msa1306560 AT4G23420.4 66.372 113 38 0 1 113 1 113 5.62e-52 164
Msa1306560 AT4G23420.1 66.372 113 38 0 1 113 1 113 1.88e-51 164
Msa1306560 AT4G23420.2 66.372 113 38 0 1 113 1 113 1.88e-51 164
Msa1306560 AT4G11410.2 69.027 113 35 0 1 113 1 113 3.95e-51 162
Msa1306560 AT4G11410.1 69.027 113 35 0 1 113 1 113 1.15e-50 162
Msa1306560 AT4G23420.3 66.346 104 35 0 10 113 27 130 6.07e-46 151
Msa1306560 AT2G37540.2 53.211 109 51 0 5 113 9 117 2.83e-34 119
Msa1306560 AT4G24050.2 51.786 112 54 0 2 113 7 118 1.77e-33 117
Msa1306560 AT2G37540.1 53.211 109 51 0 5 113 9 117 2.00e-33 118
Msa1306560 AT4G24050.1 51.786 112 54 0 2 113 7 118 6.29e-33 117
Msa1306560 AT5G50130.3 52.632 114 52 1 2 113 7 120 1.06e-32 115
Msa1306560 AT5G50130.9 52.632 114 52 1 2 113 7 120 1.17e-32 115
Msa1306560 AT5G50130.1 52.632 114 52 1 2 113 7 120 2.56e-32 115
Msa1306560 AT5G50130.2 52.632 114 52 1 2 113 7 120 3.75e-32 115
Msa1306560 AT5G50130.4 52.632 114 52 1 2 113 7 120 3.98e-32 115
Msa1306560 AT1G64590.1 54.639 97 44 0 17 113 22 118 1.28e-26 100
Msa1306560 AT5G02540.1 47.706 109 57 0 5 113 9 117 1.01e-23 93.2
Msa1306560 AT5G50130.7 53.750 80 37 0 34 113 8 87 3.39e-22 88.6
Msa1306560 AT5G50130.8 53.750 80 37 0 34 113 8 87 3.68e-22 88.6
Msa1306560 AT5G50130.6 53.750 80 37 0 34 113 8 87 5.45e-22 87.8
Msa1306560 AT5G50130.5 53.750 80 37 0 34 113 8 87 5.47e-22 87.8
Msa1306560 AT4G27760.1 43.478 92 40 3 30 113 58 145 2.27e-13 65.1
Msa1306560 AT5G53100.1 41.111 90 47 1 30 113 45 134 4.07e-13 64.3
Msa1306560 AT5G53090.1 42.697 89 45 2 30 113 57 144 1.75e-11 59.7
Msa1306560 AT1G03630.1 43.023 86 42 3 31 113 91 172 3.08e-11 58.9
Msa1306560 AT1G03630.2 43.023 86 42 3 31 113 89 170 3.17e-11 58.9

Find 93 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATAAAAGTTGTTTCTTAA+TGG 0.163005 8_4:+1524104 None:intergenic
TTGGGCCAGCTTTGTATCTT+TGG 0.197146 8_4:+1521318 None:intergenic
TTTCGACTAAATACCTAAAT+TGG 0.197991 8_4:-1523481 Msa1306560:three_prime_UTR
ACAATTTCAAGTACCAATTT+AGG 0.211511 8_4:+1523468 None:intergenic
GACCAATTATGCAATGTTTC+TGG 0.212873 8_4:-1524167 Msa1306560:five_prime_UTR
GACCAGAAACATTGCATAAT+TGG 0.213548 8_4:+1524165 None:intergenic
TCAGAGTATCCATTCATTAC+AGG 0.268729 8_4:-1521123 Msa1306560:three_prime_UTR
TTATGTATAGATTGCAGATT+TGG 0.274351 8_4:-1523117 Msa1306560:three_prime_UTR
AAAGGTTTGTCAACAGAAAA+TGG 0.291840 8_4:+1522845 None:intergenic
TGATCTCTAGAATTGCTAAA+TGG 0.342459 8_4:+1523251 None:intergenic
CCACAGGTCAAGGGTATATC+TGG 0.344276 8_4:-1521385 Msa1306560:three_prime_UTR
ACAATTTCTAACCATACATA+TGG 0.364521 8_4:-1523523 Msa1306560:three_prime_UTR
AATTGGTACTTGAAATTGTC+GGG 0.385431 8_4:-1523464 Msa1306560:three_prime_UTR
TTAGCTCTTTCGCATCTGTT+AGG 0.393282 8_4:-1523599 Msa1306560:CDS
ATGCAAAATATTTGCAAGCT+TGG 0.394712 8_4:+1522497 None:intergenic
ATATTAATTACCCAAGTGAT+TGG 0.395118 8_4:+1522989 None:intergenic
TGCATGCCAATGAGCTTTCA+AGG 0.395425 8_4:-1522479 Msa1306560:three_prime_UTR
TGTAAGTTTGTCTACAAAGT+AGG 0.397876 8_4:-1521278 Msa1306560:three_prime_UTR
TTTCTTAATGGATGCTCCAC+TGG 0.404476 8_4:+1524116 None:intergenic
AATCTGCAATCTATACATAA+AGG 0.413171 8_4:+1523120 None:intergenic
CAATAACTATCCTTCCTTCC+CGG 0.417908 8_4:+1522785 None:intergenic
CAAGTCACTCATGGAATTGA+TGG 0.419008 8_4:-1523886 Msa1306560:CDS
AGCATCAAGTGGTCTTGGTC+TGG 0.420894 8_4:-1523757 Msa1306560:CDS
TATCAAAGAAATGTTACTTA+AGG 0.421283 8_4:-1523661 Msa1306560:CDS
TCAGGAGCATCAAGTGGTCT+TGG 0.423419 8_4:-1523762 Msa1306560:intron
GTATCTTTGGCTAAAGAAGT+TGG 0.424566 8_4:+1521331 None:intergenic
CGGCACCATGGCTATTTCAA+TGG 0.427179 8_4:-1522067 Msa1306560:intron
CAAGCGCCTTGAAAGCTCAT+TGG 0.429868 8_4:+1522473 None:intergenic
TATCTTTGGCTAAAGAAGTT+GGG 0.430163 8_4:+1521332 None:intergenic
AATAAAATCTGTGCATCCAT+TGG 0.433029 8_4:-1523377 Msa1306560:three_prime_UTR
AAACTGTAAGGGAATGCAAC+CGG 0.434447 8_4:-1522804 Msa1306560:three_prime_UTR
AACTTGGTTCTTGAAATTGT+TGG 0.434767 8_4:+1523200 None:intergenic
AACAATTTCAAGAACCAAGT+TGG 0.449123 8_4:-1523198 Msa1306560:three_prime_UTR
GTGCATCCATTGGAATTTGT+AGG 0.458805 8_4:-1523367 Msa1306560:three_prime_UTR
TGTCAGAAGATCTAGATAGA+TGG 0.460126 8_4:-1523287 Msa1306560:three_prime_UTR
TGAGCTTTCAAGGCGCTTGA+AGG 0.461379 8_4:-1522469 Msa1306560:intron
CATCTCAAACCTGTAATGAA+TGG 0.462313 8_4:+1521114 None:intergenic
ATTGGTTGGAAAGGACCATC+TGG 0.466925 8_4:-1523934 Msa1306560:CDS
TACATGTTGTTATGGCAGTT+AGG 0.474096 8_4:-1523704 Msa1306560:CDS
ATGTGGTTTATTGGTTGGAA+AGG 0.477378 8_4:-1523943 Msa1306560:CDS
TAACAATTGTACCAGGATGA+AGG 0.477833 8_4:+1522101 None:intergenic
AAAACATCAATCTTAGCAGC+TGG 0.481983 8_4:+1523633 None:intergenic
ATAATATGAATCCATATGTA+TGG 0.484005 8_4:+1523512 None:intergenic
TCCTTTGTTTGACAGGAAGA+AGG 0.489471 8_4:-1522145 Msa1306560:intron
GCGTGGTGTACATGTTGTTA+TGG 0.496049 8_4:-1523712 Msa1306560:CDS
AATTCCATGAGTGACTTGTT+CGG 0.496592 8_4:+1523891 None:intergenic
TTTCATTCAGAGTTAGTGCT+TGG 0.497477 8_4:+1521006 None:intergenic
GCAGTTTGCAACCAATCACT+TGG 0.498350 8_4:-1523000 Msa1306560:three_prime_UTR
TGCATCCATTGGAATTTGTA+GGG 0.502981 8_4:-1523366 Msa1306560:three_prime_UTR
TTGTCTTGAGAAAGCATGAA+TGG 0.505638 8_4:+1523032 None:intergenic
TTGTCTACAAAGTAGGTTTG+AGG 0.516166 8_4:-1521271 Msa1306560:three_prime_UTR
TGCATTGCATCCACAGGTCA+AGG 0.524363 8_4:-1521395 Msa1306560:three_prime_UTR
AAATTGGTACTTGAAATTGT+CGG 0.527541 8_4:-1523465 Msa1306560:three_prime_UTR
TGCAGCCATTGCTAATATGG+TGG 0.530297 8_4:-1521596 Msa1306560:intron
GCAGCCATTGCTAATATGGT+GGG 0.536064 8_4:-1521595 Msa1306560:intron
TCTCTCACTGCAATCATCAC+TGG 0.540397 8_4:-1523859 Msa1306560:intron
AACTGTAAGGGAATGCAACC+GGG 0.543989 8_4:-1522803 Msa1306560:three_prime_UTR
TATATCTGGTGAATACTTTG+CGG 0.544760 8_4:-1521371 Msa1306560:three_prime_UTR
ACTGTTAACTCCCTTCATCC+TGG 0.557521 8_4:-1522112 Msa1306560:three_prime_UTR
GGGAATGCAACCGGGAAGGA+AGG 0.558048 8_4:-1522795 Msa1306560:three_prime_UTR
TTTAGCCAAAGATACAAAGC+TGG 0.558369 8_4:-1521323 Msa1306560:three_prime_UTR
CATTCATTACAGGTTTGAGA+TGG 0.558702 8_4:-1521113 Msa1306560:three_prime_UTR
TTACCTTGCATTGCATCCAC+AGG 0.567550 8_4:-1521401 Msa1306560:three_prime_UTR
TTAAAGATTTCGATAACGCA+AGG 0.569339 8_4:+1523425 None:intergenic
CAGTTTGCAACCAATCACTT+GGG 0.575672 8_4:-1522999 Msa1306560:intron
AACAATTGTACCAGGATGAA+GGG 0.577686 8_4:+1522102 None:intergenic
TCTAACAGTATACGATGCAA+TGG 0.583335 8_4:+1521033 None:intergenic
GATGCAATGGAATGCTACAA+TGG 0.583946 8_4:+1521046 None:intergenic
TAATTTGCTAATGATCGAGT+GGG 0.594217 8_4:+1520958 None:intergenic
ACTGCCGAACAAGTCACTCA+TGG 0.598804 8_4:-1523895 Msa1306560:CDS
TAAAGATTTCGATAACGCAA+GGG 0.601592 8_4:+1523426 None:intergenic
AGTGATGATTGCAGTGAGAG+AGG 0.602845 8_4:+1523861 None:intergenic
CTAGTCCCTACAAATTCCAA+TGG 0.603304 8_4:+1523361 None:intergenic
ATAATTTGCTAATGATCGAG+TGG 0.606772 8_4:+1520957 None:intergenic
ATATTTGTAACAATTGTACC+AGG 0.620073 8_4:+1522094 None:intergenic
TGTTACATTAGAATATTGAG+TGG 0.620095 8_4:+1523543 None:intergenic
ACAAATATTCTGCGGCACCA+TGG 0.621330 8_4:-1522079 Msa1306560:three_prime_UTR
TACTAGTAATAATGTTCCAG+TGG 0.626387 8_4:-1524132 Msa1306560:five_prime_UTR
GATAGTTATTGTATCATCAG+AGG 0.626892 8_4:-1522773 Msa1306560:three_prime_UTR
GAGTGAATAAATAACCAACT+TGG 0.630102 8_4:+1523184 None:intergenic
CTTGCCCACCATATTAGCAA+TGG 0.631089 8_4:+1521591 None:intergenic
CCAGATATACCCTTGACCTG+TGG 0.633382 8_4:+1521385 None:intergenic
GCATTGCATCCACAGGTCAA+GGG 0.636460 8_4:-1521394 Msa1306560:three_prime_UTR
ACTAACCATTGAAATAGCCA+TGG 0.642396 8_4:+1522062 None:intergenic
CAATTGTTACAAATATTCTG+CGG 0.643492 8_4:-1522087 Msa1306560:three_prime_UTR
AAGTAACAATGCAGGGACGA+TGG 0.645747 8_4:-1523060 Msa1306560:three_prime_UTR
GTCTTGGTCTGGAAACAACA+AGG 0.648423 8_4:-1523746 Msa1306560:CDS
GATGAAGCTGAGAATCCAGA+TGG 0.651050 8_4:+1523919 None:intergenic
ACAAGGATTCTTGCTATGCG+TGG 0.652761 8_4:-1523729 Msa1306560:CDS
GTAAGGGAATGCAACCGGGA+AGG 0.654933 8_4:-1522799 Msa1306560:three_prime_UTR
ATACTTTGCGGATAGCAACA+AGG 0.668282 8_4:-1521359 Msa1306560:three_prime_UTR
TGACCTGTGGATGCAATGCA+AGG 0.671162 8_4:+1521398 None:intergenic
AATATTGAGTGGAAGACCAG+AGG 0.674080 8_4:+1523554 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATACCAAAAAAAAAA+AGG - chr8_4:1521017-1521036 Msa1306560:three_prime_UTR 10.0%
!!! AAAAAAATACTTAATTCTTT+TGG + chr8_4:1523220-1523239 None:intergenic 10.0%
!! TTATTTATCTTAATAACTAA+AGG + chr8_4:1523288-1523307 None:intergenic 10.0%
!! TATTAAGATAAATAAATAGT+TGG - chr8_4:1523293-1523312 Msa1306560:three_prime_UTR 10.0%
!!! TAATAAAAGTTGTTTCTTAA+TGG + chr8_4:1521003-1521022 None:intergenic 15.0%
!!! AAGTATTTCCTTTTTTTTTT+TGG + chr8_4:1521028-1521047 None:intergenic 15.0%
!!! TTAATGATTTGATTATTTTC+AGG - chr8_4:1521324-1521343 Msa1306560:three_prime_UTR 15.0%
!!! ATATTTCCAAATTTTACAAT+AGG - chr8_4:1523361-1523380 Msa1306560:three_prime_UTR 15.0%
!!! TATCAAAGAAATGTTACTTA+AGG - chr8_4:1521443-1521462 Msa1306560:intron 20.0%
!! ATAATATGAATCCATATGTA+TGG + chr8_4:1521595-1521614 None:intergenic 20.0%
!!! GATCATTTTGTAATATTGAT+AGG - chr8_4:1521871-1521890 Msa1306560:intron 20.0%
!! AAGATATATGTTATAATGTG+AGG + chr8_4:1522147-1522166 None:intergenic 20.0%
!! ATGTACAAAACAAAAATTGA+AGG - chr8_4:1522212-1522231 Msa1306560:intron 20.0%
!!! AATATTTGATAGTATTTTGC+AGG - chr8_4:1522236-1522255 Msa1306560:intron 20.0%
!!! TTTTCATAGTCTCTAATAAA+AGG + chr8_4:1522280-1522299 None:intergenic 20.0%
!! TAAACTCGATATTAATAAGT+TGG + chr8_4:1522800-1522819 None:intergenic 20.0%
!!! AATACTTAATTCTTTTGGTT+TGG + chr8_4:1523215-1523234 None:intergenic 20.0%
!! AATAACTAAAGGATAACTTT+GGG + chr8_4:1523277-1523296 None:intergenic 20.0%
!! TAATAACTAAAGGATAACTT+TGG + chr8_4:1523278-1523297 None:intergenic 20.0%
!! TAAGATCCTATTGTAAAATT+TGG + chr8_4:1523370-1523389 None:intergenic 20.0%
!! AAATTATGTACAACAATAAC+CGG + chr8_4:1523448-1523467 None:intergenic 20.0%
!! ACATTTTTACAGTCAAAACA+AGG + chr8_4:1521145-1521164 None:intergenic 25.0%
!!! TTGTTTTGACTGTAAAAATG+TGG - chr8_4:1521144-1521163 Msa1306560:three_prime_UTR 25.0%
! ACTGTAAAAATGTGGTTTAT+TGG - chr8_4:1521152-1521171 Msa1306560:three_prime_UTR 25.0%
! TAAAAATGTGGTTTATTGGT+TGG - chr8_4:1521156-1521175 Msa1306560:three_prime_UTR 25.0%
! TGTTACATTAGAATATTGAG+TGG + chr8_4:1521564-1521583 None:intergenic 25.0%
! ACAATTTCTAACCATACATA+TGG - chr8_4:1521581-1521600 Msa1306560:three_prime_UTR 25.0%
! TTTCGACTAAATACCTAAAT+TGG - chr8_4:1521623-1521642 Msa1306560:intron 25.0%
!! ACAATTTCAAGTACCAATTT+AGG + chr8_4:1521639-1521658 None:intergenic 25.0%
! AAATTGGTACTTGAAATTGT+CGG - chr8_4:1521639-1521658 Msa1306560:intron 25.0%
! AATCTGCAATCTATACATAA+AGG + chr8_4:1521987-1522006 None:intergenic 25.0%
! TTATGTATAGATTGCAGATT+TGG - chr8_4:1521987-1522006 Msa1306560:intron 25.0%
! ATATTAATTACCCAAGTGAT+TGG + chr8_4:1522118-1522137 None:intergenic 25.0%
! AGACTATGAAAAAAACTGTA+AGG - chr8_4:1522288-1522307 Msa1306560:intron 25.0%
! GACTATGAAAAAAACTGTAA+GGG - chr8_4:1522289-1522308 Msa1306560:intron 25.0%
!! ACAGATTTTCATATAGTGAA+GGG - chr8_4:1522357-1522376 Msa1306560:intron 25.0%
! AATCAGAGTAATTATCTAGT+TGG - chr8_4:1522405-1522424 Msa1306560:intron 25.0%
! GTGGGAAATTATAAAATTCT+GGG + chr8_4:1522536-1522555 None:intergenic 25.0%
! AGTGGGAAATTATAAAATTC+TGG + chr8_4:1522537-1522556 None:intergenic 25.0%
! TATCTGTAAAGAATCAAACA+GGG + chr8_4:1522561-1522580 None:intergenic 25.0%
! TCGTAAGATTCAATCTTATT+TGG - chr8_4:1522690-1522709 Msa1306560:intron 25.0%
! ATATTTGTAACAATTGTACC+AGG + chr8_4:1523013-1523032 None:intergenic 25.0%
! CAATTGTTACAAATATTCTG+CGG - chr8_4:1523017-1523036 Msa1306560:three_prime_UTR 25.0%
! TAATCAGCAATAGTTGAAAA+TGG + chr8_4:1523075-1523094 None:intergenic 25.0%
!! GATTAAGTATCCTTTTTGTT+TGG - chr8_4:1523090-1523109 Msa1306560:three_prime_UTR 25.0%
!!! TACATAATTTCTCCTTGTTT+TGG - chr8_4:1523458-1523477 Msa1306560:three_prime_UTR 25.0%
! ATGAACAAAAATCCAAAACA+AGG + chr8_4:1523473-1523492 None:intergenic 25.0%
! CAATTCAATTAGTAAAAAGC+TGG + chr8_4:1523646-1523665 None:intergenic 25.0%
!! GCTTTTTACTAATTGAATTG+TGG - chr8_4:1523646-1523665 Msa1306560:CDS 25.0%
!! TTTTACTAATTGAATTGTGG+TGG - chr8_4:1523649-1523668 Msa1306560:CDS 25.0%
!! ACTTAATTCCCATAGTTTTT+GGG + chr8_4:1523807-1523826 None:intergenic 25.0%
!! ATGTAAAACTTTTCATCACT+AGG + chr8_4:1523935-1523954 None:intergenic 25.0%
TACTAGTAATAATGTTCCAG+TGG - chr8_4:1520972-1520991 Msa1306560:three_prime_UTR 30.0%
! TTCATCTAACTCAGTTTTTG+AGG + chr8_4:1521304-1521323 None:intergenic 30.0%
AATTGGTACTTGAAATTGTC+GGG - chr8_4:1521640-1521659 Msa1306560:intron 30.0%
TAAAGATTTCGATAACGCAA+GGG + chr8_4:1521681-1521700 None:intergenic 30.0%
TTAAAGATTTCGATAACGCA+AGG + chr8_4:1521682-1521701 None:intergenic 30.0%
AATAAAATCTGTGCATCCAT+TGG - chr8_4:1521727-1521746 Msa1306560:intron 30.0%
!! TGATCTCTAGAATTGCTAAA+TGG + chr8_4:1521856-1521875 None:intergenic 30.0%
! AACTTGGTTCTTGAAATTGT+TGG + chr8_4:1521907-1521926 None:intergenic 30.0%
AACAATTTCAAGAACCAAGT+TGG - chr8_4:1521906-1521925 Msa1306560:intron 30.0%
GAGTGAATAAATAACCAACT+TGG + chr8_4:1521923-1521942 None:intergenic 30.0%
!!! TTCTTTTCAAGTAACAATGC+AGG - chr8_4:1522036-1522055 Msa1306560:intron 30.0%
!!! TCTTTTCAAGTAACAATGCA+GGG - chr8_4:1522037-1522056 Msa1306560:intron 30.0%
AAAGGTTTGTCAACAGAAAA+TGG + chr8_4:1522262-1522281 None:intergenic 30.0%
GATAGTTATTGTATCATCAG+AGG - chr8_4:1522331-1522350 Msa1306560:intron 30.0%
! CACAGATTTTCATATAGTGA+AGG - chr8_4:1522356-1522375 Msa1306560:intron 30.0%
GTATCTGTAAAGAATCAAAC+AGG + chr8_4:1522562-1522581 None:intergenic 30.0%
!! TACAGCAGTTATTTTGCTTA+TGG - chr8_4:1522579-1522598 Msa1306560:intron 30.0%
ATGCAAAATATTTGCAAGCT+TGG + chr8_4:1522610-1522629 None:intergenic 30.0%
! TGTGTTTAAAGCAGTCTTAT+GGG - chr8_4:1522770-1522789 Msa1306560:three_prime_UTR 30.0%
TGAAGCAGTCTATTTACAAT+GGG + chr8_4:1522874-1522893 None:intergenic 30.0%
TAAATAGACTGCTTCAGTAA+TGG - chr8_4:1522878-1522897 Msa1306560:intron 30.0%
TCAAACAAAGGAATATGCAA+GGG + chr8_4:1522951-1522970 None:intergenic 30.0%
!! GTATCCTTTTTGTTTGGAAT+AGG - chr8_4:1523096-1523115 Msa1306560:three_prime_UTR 30.0%
TCAATGGAGTCTTACAAATA+GGG + chr8_4:1523192-1523211 None:intergenic 30.0%
!!! AATTCTTTTGGTTTGGTCAA+TGG + chr8_4:1523208-1523227 None:intergenic 30.0%
!!! GTTGGTCTTTTAATTCTCTT+TGG - chr8_4:1523311-1523330 Msa1306560:three_prime_UTR 30.0%
TAGGATCTTACAAATAGAGA+CGG - chr8_4:1523380-1523399 Msa1306560:three_prime_UTR 30.0%
! ATACCTGTTGGACATTTTTA+AGG + chr8_4:1523544-1523563 None:intergenic 30.0%
TATATCTGGTGAATACTTTG+CGG - chr8_4:1523733-1523752 Msa1306560:CDS 30.0%
TATCTTTGGCTAAAGAAGTT+GGG + chr8_4:1523775-1523794 None:intergenic 30.0%
! CACTTAATTCCCATAGTTTT+TGG + chr8_4:1523808-1523827 None:intergenic 30.0%
TGTAAGTTTGTCTACAAAGT+AGG - chr8_4:1523826-1523845 Msa1306560:intron 30.0%
!! TAATTTGCTAATGATCGAGT+GGG + chr8_4:1524149-1524168 None:intergenic 30.0%
!! ATAATTTGCTAATGATCGAG+TGG + chr8_4:1524150-1524169 None:intergenic 30.0%
! ATGTGGTTTATTGGTTGGAA+AGG - chr8_4:1521161-1521180 Msa1306560:three_prime_UTR 35.0%
!! AATTCCATGAGTGACTTGTT+CGG + chr8_4:1521216-1521235 None:intergenic 35.0%
!!! TTATTTTCAGGAGCATCAAG+TGG - chr8_4:1521336-1521355 Msa1306560:three_prime_UTR 35.0%
TACATGTTGTTATGGCAGTT+AGG - chr8_4:1521400-1521419 Msa1306560:three_prime_UTR 35.0%
GCAGTTAGGAATGTGAAAAA+TGG - chr8_4:1521414-1521433 Msa1306560:three_prime_UTR 35.0%
AAAACATCAATCTTAGCAGC+TGG + chr8_4:1521474-1521493 None:intergenic 35.0%
TGCATCCATTGGAATTTGTA+GGG - chr8_4:1521738-1521757 Msa1306560:intron 35.0%
TGTCAGAAGATCTAGATAGA+TGG - chr8_4:1521817-1521836 Msa1306560:intron 35.0%
! TTGTCTTGAGAAAGCATGAA+TGG + chr8_4:1522075-1522094 None:intergenic 35.0%
TCTTTCCTTTATCTGCTACA+AGG - chr8_4:1522449-1522468 Msa1306560:intron 35.0%
AAAGAATCAAACAGGGAAGT+GGG + chr8_4:1522554-1522573 None:intergenic 35.0%
TAAAGAATCAAACAGGGAAG+TGG + chr8_4:1522555-1522574 None:intergenic 35.0%
TTACCATCACGTTACTCTAA+CGG + chr8_4:1522721-1522740 None:intergenic 35.0%
! TAAGACTGCTTTAAACACAG+TGG + chr8_4:1522769-1522788 None:intergenic 35.0%
! CTGTGTTTAAAGCAGTCTTA+TGG - chr8_4:1522769-1522788 Msa1306560:three_prime_UTR 35.0%
CGAGTTTATTGAAATCCAAG+CGG - chr8_4:1522812-1522831 Msa1306560:three_prime_UTR 35.0%
CTGAAGCAGTCTATTTACAA+TGG + chr8_4:1522875-1522894 None:intergenic 35.0%
TGACTAGACGATGAACTTAT+TGG - chr8_4:1522908-1522927 Msa1306560:intron 35.0%
GTCAAACAAAGGAATATGCA+AGG + chr8_4:1522952-1522971 None:intergenic 35.0%
! TGCATATTCCTTTGTTTGAC+AGG - chr8_4:1522952-1522971 Msa1306560:intron 35.0%
AACAATTGTACCAGGATGAA+GGG + chr8_4:1523005-1523024 None:intergenic 35.0%
TAACAATTGTACCAGGATGA+AGG + chr8_4:1523006-1523025 None:intergenic 35.0%
ACTAACCATTGAAATAGCCA+TGG + chr8_4:1523045-1523064 None:intergenic 35.0%
CAGACCTATTCCAAACAAAA+AGG + chr8_4:1523103-1523122 None:intergenic 35.0%
AATAGGTCTGATGTCCTATT+CGG - chr8_4:1523113-1523132 Msa1306560:three_prime_UTR 35.0%
GTCAATGGAGTCTTACAAAT+AGG + chr8_4:1523193-1523212 None:intergenic 35.0%
TATGTACGAGTCATACTAAC+CGG - chr8_4:1523426-1523445 Msa1306560:three_prime_UTR 35.0%
! TTTTGCAGCCATTGCTAATA+TGG - chr8_4:1523505-1523524 Msa1306560:three_prime_UTR 35.0%
CTTCCTTAAAAATGTCCAAC+AGG - chr8_4:1523538-1523557 Msa1306560:exon 35.0%
ACTAAAAAATTGTGAGCCTG+TGG + chr8_4:1523571-1523590 None:intergenic 35.0%
GTATCTTTGGCTAAAGAAGT+TGG + chr8_4:1523776-1523795 None:intergenic 35.0%
TTTAGCCAAAGATACAAAGC+TGG - chr8_4:1523781-1523800 Msa1306560:intron 35.0%
TTGTCTACAAAGTAGGTTTG+AGG - chr8_4:1523833-1523852 Msa1306560:intron 35.0%
! TCAGAGTATCCATTCATTAC+AGG - chr8_4:1523981-1524000 Msa1306560:five_prime_UTR 35.0%
CATCTCAAACCTGTAATGAA+TGG + chr8_4:1523993-1524012 None:intergenic 35.0%
CATTCATTACAGGTTTGAGA+TGG - chr8_4:1523991-1524010 Msa1306560:five_prime_UTR 35.0%
TCTAACAGTATACGATGCAA+TGG + chr8_4:1524074-1524093 None:intergenic 35.0%
TTTCATTCAGAGTTAGTGCT+TGG + chr8_4:1524101-1524120 None:intergenic 35.0%
! TTTCTTAATGGATGCTCCAC+TGG + chr8_4:1520991-1521010 None:intergenic 40.0%
CAAGTCACTCATGGAATTGA+TGG - chr8_4:1521218-1521237 Msa1306560:three_prime_UTR 40.0%
! TTAGCTCTTTCGCATCTGTT+AGG - chr8_4:1521505-1521524 Msa1306560:intron 40.0%
!!! GCAGCAGATTTTAATTCCTC+TGG - chr8_4:1521534-1521553 Msa1306560:intron 40.0%
AATATTGAGTGGAAGACCAG+AGG + chr8_4:1521553-1521572 None:intergenic 40.0%
GTGCATCCATTGGAATTTGT+AGG - chr8_4:1521737-1521756 Msa1306560:intron 40.0%
CTAGTCCCTACAAATTCCAA+TGG + chr8_4:1521746-1521765 None:intergenic 40.0%
CAGTTTGCAACCAATCACTT+GGG - chr8_4:1522105-1522124 Msa1306560:three_prime_UTR 40.0%
AAACTGTAAGGGAATGCAAC+CGG - chr8_4:1522300-1522319 Msa1306560:intron 40.0%
CAATAACTATCCTTCCTTCC+CGG + chr8_4:1522322-1522341 None:intergenic 40.0%
! ATGAGCCTTGTAGCAGATAA+AGG + chr8_4:1522457-1522476 None:intergenic 40.0%
AGCAGTCTATTTACAATGGG+AGG + chr8_4:1522871-1522890 None:intergenic 40.0%
! TCCTTTGTTTGACAGGAAGA+AGG - chr8_4:1522959-1522978 Msa1306560:intron 40.0%
TCCTTCTTCCTGTCAAACAA+AGG + chr8_4:1522963-1522982 None:intergenic 40.0%
ATACTTTGCGGATAGCAACA+AGG - chr8_4:1523745-1523764 Msa1306560:CDS 40.0%
AAAGCTGGCCCAAAAACTAT+GGG - chr8_4:1523796-1523815 Msa1306560:intron 40.0%
GATGCAATGGAATGCTACAA+TGG + chr8_4:1524061-1524080 None:intergenic 40.0%
ATTGGTTGGAAAGGACCATC+TGG - chr8_4:1521170-1521189 Msa1306560:three_prime_UTR 45.0%
GATGAAGCTGAGAATCCAGA+TGG + chr8_4:1521188-1521207 None:intergenic 45.0%
AGTGATGATTGCAGTGAGAG+AGG + chr8_4:1521246-1521265 None:intergenic 45.0%
TCTCTCACTGCAATCATCAC+TGG - chr8_4:1521245-1521264 Msa1306560:three_prime_UTR 45.0%
GTCTTGGTCTGGAAACAACA+AGG - chr8_4:1521358-1521377 Msa1306560:three_prime_UTR 45.0%
! ACAAGGATTCTTGCTATGCG+TGG - chr8_4:1521375-1521394 Msa1306560:three_prime_UTR 45.0%
GCGTGGTGTACATGTTGTTA+TGG - chr8_4:1521392-1521411 Msa1306560:three_prime_UTR 45.0%
AAGTAACAATGCAGGGACGA+TGG - chr8_4:1522044-1522063 Msa1306560:intron 45.0%
GCAGTTTGCAACCAATCACT+TGG - chr8_4:1522104-1522123 Msa1306560:three_prime_UTR 45.0%
AACTGTAAGGGAATGCAACC+GGG - chr8_4:1522301-1522320 Msa1306560:intron 45.0%
TGCATGCCAATGAGCTTTCA+AGG - chr8_4:1522625-1522644 Msa1306560:intron 45.0%
CAACCGTTAGAGTAACGTGA+TGG - chr8_4:1522715-1522734 Msa1306560:three_prime_UTR 45.0%
ACGTGATGGTAACTCGTTGA+CGG - chr8_4:1522729-1522748 Msa1306560:three_prime_UTR 45.0%
!! ACGAGCTATTTTCTTCCGCT+TGG + chr8_4:1522830-1522849 None:intergenic 45.0%
ACTGTTAACTCCCTTCATCC+TGG - chr8_4:1522992-1523011 Msa1306560:intron 45.0%
ACAAATATTCTGCGGCACCA+TGG - chr8_4:1523025-1523044 Msa1306560:three_prime_UTR 45.0%
TCTGATGTCCTATTCGGTTC+TGG - chr8_4:1523119-1523138 Msa1306560:three_prime_UTR 45.0%
! ATGTCCTATTCGGTTCTGGT+TGG - chr8_4:1523123-1523142 Msa1306560:three_prime_UTR 45.0%
ATGACCAACCAGAACCGAAT+AGG + chr8_4:1523130-1523149 None:intergenic 45.0%
! TCGGTTCTGGTTGGTCATAT+TGG - chr8_4:1523132-1523151 Msa1306560:three_prime_UTR 45.0%
TGCAGCCATTGCTAATATGG+TGG - chr8_4:1523508-1523527 Msa1306560:three_prime_UTR 45.0%
GCAGCCATTGCTAATATGGT+GGG - chr8_4:1523509-1523528 Msa1306560:three_prime_UTR 45.0%
CTTGCCCACCATATTAGCAA+TGG + chr8_4:1523516-1523535 None:intergenic 45.0%
! TCCAACAGGTATTTTGCCAC+AGG - chr8_4:1523552-1523571 Msa1306560:CDS 45.0%
! TGTGGTGGCACTTCTTTTGT+AGG - chr8_4:1523664-1523683 Msa1306560:CDS 45.0%
! GTGGTGGCACTTCTTTTGTA+GGG - chr8_4:1523665-1523684 Msa1306560:CDS 45.0%
TTACCTTGCATTGCATCCAC+AGG - chr8_4:1523703-1523722 Msa1306560:CDS 45.0%
! TTGGGCCAGCTTTGTATCTT+TGG + chr8_4:1523789-1523808 None:intergenic 45.0%
CAAAGCTGGCCCAAAAACTA+TGG - chr8_4:1523795-1523814 Msa1306560:intron 45.0%
ACTGCCGAACAAGTCACTCA+TGG - chr8_4:1521209-1521228 Msa1306560:three_prime_UTR 50.0%
!! TCAGGAGCATCAAGTGGTCT+TGG - chr8_4:1521342-1521361 Msa1306560:three_prime_UTR 50.0%
! AGCATCAAGTGGTCTTGGTC+TGG - chr8_4:1521347-1521366 Msa1306560:three_prime_UTR 50.0%
CAAGCGCCTTGAAAGCTCAT+TGG + chr8_4:1522634-1522653 None:intergenic 50.0%
! TGAGCTTTCAAGGCGCTTGA+AGG - chr8_4:1522635-1522654 Msa1306560:intron 50.0%
! CGGCACCATGGCTATTTCAA+TGG - chr8_4:1523037-1523056 Msa1306560:three_prime_UTR 50.0%
GCCTGTGGCAAAATACCTGT+TGG + chr8_4:1523556-1523575 None:intergenic 50.0%
TGACCTGTGGATGCAATGCA+AGG + chr8_4:1523709-1523728 None:intergenic 50.0%
TGCATTGCATCCACAGGTCA+AGG - chr8_4:1523709-1523728 Msa1306560:CDS 50.0%
GCATTGCATCCACAGGTCAA+GGG - chr8_4:1523710-1523729 Msa1306560:CDS 50.0%
CCAGATATACCCTTGACCTG+TGG + chr8_4:1523722-1523741 None:intergenic 50.0%
! CCACAGGTCAAGGGTATATC+TGG - chr8_4:1523719-1523738 Msa1306560:CDS 50.0%
GTAAGGGAATGCAACCGGGA+AGG - chr8_4:1522305-1522324 Msa1306560:intron 55.0%
GGGAATGCAACCGGGAAGGA+AGG - chr8_4:1522309-1522328 Msa1306560:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 1520940 1524186 1520940 ID=Msa1306560;Name=Msa1306560
chr8_4 mRNA 1520940 1524186 1520940 ID=Msa1306560-mRNA-1;Parent=Msa1306560;Name=Msa1306560-mRNA-1;_AED=0.11;_eAED=0.11;_QI=221|1|1|1|1|0.85|7|1411|113
chr8_4 exon 1520940 1521440 1520940 ID=Msa1306560-mRNA-1:exon:429;Parent=Msa1306560-mRNA-1
chr8_4 exon 1521567 1521613 1521567 ID=Msa1306560-mRNA-1:exon:428;Parent=Msa1306560-mRNA-1
chr8_4 exon 1522068 1522152 1522068 ID=Msa1306560-mRNA-1:exon:427;Parent=Msa1306560-mRNA-1
chr8_4 exon 1522470 1522548 1522470 ID=Msa1306560-mRNA-1:exon:426;Parent=Msa1306560-mRNA-1
chr8_4 exon 1522715 1522868 1522715 ID=Msa1306560-mRNA-1:exon:425;Parent=Msa1306560-mRNA-1
chr8_4 exon 1523000 1523780 1523000 ID=Msa1306560-mRNA-1:exon:424;Parent=Msa1306560-mRNA-1
chr8_4 exon 1523860 1524186 1523860 ID=Msa1306560-mRNA-1:exon:423;Parent=Msa1306560-mRNA-1
chr8_4 five_prime_UTR 1523966 1524186 1523966 ID=Msa1306560-mRNA-1:five_prime_utr;Parent=Msa1306560-mRNA-1
chr8_4 CDS 1523860 1523965 1523860 ID=Msa1306560-mRNA-1:cds;Parent=Msa1306560-mRNA-1
chr8_4 CDS 1523545 1523780 1523545 ID=Msa1306560-mRNA-1:cds;Parent=Msa1306560-mRNA-1
chr8_4 three_prime_UTR 1523000 1523544 1523000 ID=Msa1306560-mRNA-1:three_prime_utr;Parent=Msa1306560-mRNA-1
chr8_4 three_prime_UTR 1522715 1522868 1522715 ID=Msa1306560-mRNA-1:three_prime_utr;Parent=Msa1306560-mRNA-1
chr8_4 three_prime_UTR 1522470 1522548 1522470 ID=Msa1306560-mRNA-1:three_prime_utr;Parent=Msa1306560-mRNA-1
chr8_4 three_prime_UTR 1522068 1522152 1522068 ID=Msa1306560-mRNA-1:three_prime_utr;Parent=Msa1306560-mRNA-1
chr8_4 three_prime_UTR 1521567 1521613 1521567 ID=Msa1306560-mRNA-1:three_prime_utr;Parent=Msa1306560-mRNA-1
chr8_4 three_prime_UTR 1520940 1521440 1520940 ID=Msa1306560-mRNA-1:three_prime_utr;Parent=Msa1306560-mRNA-1
Gene Sequence

>Msa1306560

ATGTGGTTTATTGGTTGGAAAGGACCATCTGGATTCTCAGCTTCATCAACTGCCGAACAAGTCACTCATGGAATTGATGGAACCTCTCTCACTGCAATCATCACTGGAGCATCAAGTGGTCTTGGTCTGGAAACAACAAGGATTCTTGCTATGCGTGGTGTACATGTTGTTATGGCAGTTAGGAATGTGAAAAATGGTATAGATATCAAAGAAATGTTACTTAAGGAAATTCCAGCTGCTAAGATTGATGTTTTTGAGTTAGATCTTAGCTCTTTCGCATCTGTTAGGAAATTCGCAGCAGATTTTAATTCCTCTGGTCTTCCACTCAATATTCTAATGTAA

Protein sequence

>Msa1306560

MWFIGWKGPSGFSASSTAEQVTHGIDGTSLTAIITGASSGLGLETTRILAMRGVHVVMAVRNVKNGIDIKEMLLKEIPAAKIDVFELDLSSFASVRKFAADFNSSGLPLNILM*