AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0688390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0688390 MtrunA17_Chr8g0386971 93.805 113 7 0 1 113 1 113 2.80e-72 217
Msa0688390 MtrunA17_Chr1g0202891 71.681 113 32 0 1 113 1 113 5.48e-51 163
Msa0688390 MtrunA17_Chr1g0202931 69.027 113 35 0 1 113 1 113 7.58e-51 162
Msa0688390 MtrunA17_Chr1g0202871 69.912 113 34 0 1 113 1 113 3.22e-50 161
Msa0688390 MtrunA17_Chr1g0202861 65.487 113 39 0 1 113 42 154 2.64e-47 155
Msa0688390 MtrunA17_Chr6g0470321 66.667 105 35 0 9 113 17 121 9.69e-46 150
Msa0688390 MtrunA17_Chr6g0470501 67.308 104 34 0 10 113 37 140 8.90e-45 148
Msa0688390 MtrunA17_Chr7g0262941 54.128 109 50 0 5 113 10 118 1.55e-36 126
Msa0688390 MtrunA17_Chr1g0182541 53.211 109 51 0 5 113 10 118 3.24e-36 125
Msa0688390 MtrunA17_Chr3g0117241 46.957 115 58 1 2 113 7 121 3.54e-33 113
Msa0688390 MtrunA17_Chr4g0058731 48.696 115 56 1 2 113 18 132 3.47e-31 112
Msa0688390 MtrunA17_Chr8g0388831 49.558 113 56 1 2 113 7 119 5.05e-29 107
Msa0688390 MtrunA17_Chr1g0202911 47.297 74 39 0 33 106 4 77 7.75e-23 84.7
Msa0688390 MtrunA17_Chr6g0481311 43.333 90 45 1 30 113 62 151 2.07e-14 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0688390 AT4G23430.4 66.372 113 38 0 1 113 1 113 2.04e-52 167
Msa0688390 AT4G23430.3 66.372 113 38 0 1 113 1 113 2.09e-52 167
Msa0688390 AT4G23430.2 66.372 113 38 0 1 113 1 113 3.17e-52 167
Msa0688390 AT4G23430.1 66.372 113 38 0 1 113 1 113 3.58e-52 166
Msa0688390 AT4G23420.5 66.372 113 38 0 1 113 1 113 4.02e-52 165
Msa0688390 AT4G23420.4 66.372 113 38 0 1 113 1 113 5.62e-52 164
Msa0688390 AT4G23420.1 66.372 113 38 0 1 113 1 113 1.88e-51 164
Msa0688390 AT4G23420.2 66.372 113 38 0 1 113 1 113 1.88e-51 164
Msa0688390 AT4G11410.2 69.027 113 35 0 1 113 1 113 3.95e-51 162
Msa0688390 AT4G11410.1 69.027 113 35 0 1 113 1 113 1.15e-50 162
Msa0688390 AT4G23420.3 66.346 104 35 0 10 113 27 130 6.07e-46 151
Msa0688390 AT2G37540.2 53.211 109 51 0 5 113 9 117 2.83e-34 119
Msa0688390 AT4G24050.2 51.786 112 54 0 2 113 7 118 1.77e-33 117
Msa0688390 AT2G37540.1 53.211 109 51 0 5 113 9 117 2.00e-33 118
Msa0688390 AT4G24050.1 51.786 112 54 0 2 113 7 118 6.29e-33 117
Msa0688390 AT5G50130.3 52.632 114 52 1 2 113 7 120 1.06e-32 115
Msa0688390 AT5G50130.9 52.632 114 52 1 2 113 7 120 1.17e-32 115
Msa0688390 AT5G50130.1 52.632 114 52 1 2 113 7 120 2.56e-32 115
Msa0688390 AT5G50130.2 52.632 114 52 1 2 113 7 120 3.75e-32 115
Msa0688390 AT5G50130.4 52.632 114 52 1 2 113 7 120 3.98e-32 115
Msa0688390 AT1G64590.1 54.639 97 44 0 17 113 22 118 1.28e-26 100
Msa0688390 AT5G02540.1 47.706 109 57 0 5 113 9 117 1.01e-23 93.2
Msa0688390 AT5G50130.7 53.750 80 37 0 34 113 8 87 3.39e-22 88.6
Msa0688390 AT5G50130.8 53.750 80 37 0 34 113 8 87 3.68e-22 88.6
Msa0688390 AT5G50130.6 53.750 80 37 0 34 113 8 87 5.45e-22 87.8
Msa0688390 AT5G50130.5 53.750 80 37 0 34 113 8 87 5.47e-22 87.8
Msa0688390 AT4G27760.1 43.478 92 40 3 30 113 58 145 2.27e-13 65.1
Msa0688390 AT5G53100.1 41.111 90 47 1 30 113 45 134 4.07e-13 64.3
Msa0688390 AT5G53090.1 42.697 89 45 2 30 113 57 144 1.75e-11 59.7
Msa0688390 AT1G03630.1 43.023 86 42 3 31 113 91 172 3.08e-11 58.9
Msa0688390 AT1G03630.2 43.023 86 42 3 31 113 89 170 3.17e-11 58.9

Find 93 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATAAAAGTTGTTTCTTAA+TGG 0.163005 4_4:-54299453 None:intergenic
TTGGGCCAGCTTTGTATCTT+TGG 0.197146 4_4:-54302236 None:intergenic
TTTCGACTAAATACCTAAAT+TGG 0.197991 4_4:+54300075 Msa0688390:three_prime_UTR
ACAATTTCAAGTACCAATTT+AGG 0.211511 4_4:-54300088 None:intergenic
GACCAATTATGCAATGTTTC+TGG 0.212873 4_4:+54299390 None:intergenic
GACCAGAAACATTGCATAAT+TGG 0.213548 4_4:-54299392 None:intergenic
TCAGAGTATCCATTCATTAC+AGG 0.268729 4_4:+54302431 Msa0688390:three_prime_UTR
TTATGTATAGATTGCAGATT+TGG 0.274351 4_4:+54300439 Msa0688390:three_prime_UTR
AAAGGTTTGTCAACAGAAAA+TGG 0.291840 4_4:-54300711 None:intergenic
TGATCTCTAGAATTGCTAAA+TGG 0.342459 4_4:-54300305 None:intergenic
CCACAGGTCAAGGGTATATC+TGG 0.344276 4_4:+54302169 Msa0688390:three_prime_UTR
ACAATTTCTAACCATACATA+TGG 0.364521 4_4:+54300033 Msa0688390:exon
AATTGGTACTTGAAATTGTC+GGG 0.385431 4_4:+54300092 Msa0688390:three_prime_UTR
TTAGCTCTTTCGCATCTGTT+AGG 0.393282 4_4:+54299957 Msa0688390:CDS
ATGCAAAATATTTGCAAGCT+TGG 0.394712 4_4:-54301059 None:intergenic
ATATTAATTACCCAAGTGAT+TGG 0.395118 4_4:-54300567 None:intergenic
TGCATGCCAATGAGCTTTCA+AGG 0.395425 4_4:+54301077 Msa0688390:three_prime_UTR
TGTAAGTTTGTCTACAAAGT+AGG 0.397876 4_4:+54302276 Msa0688390:three_prime_UTR
TTTCTTAATGGATGCTCCAC+TGG 0.404476 4_4:-54299441 None:intergenic
AATCTGCAATCTATACATAA+AGG 0.413171 4_4:-54300436 None:intergenic
CAATAACTATCCTTCCTTCC+CGG 0.417908 4_4:-54300771 None:intergenic
CAAGTCACTCATGGAATTGA+TGG 0.419008 4_4:+54299670 Msa0688390:CDS
AGCATCAAGTGGTCTTGGTC+TGG 0.420894 4_4:+54299799 Msa0688390:CDS
TATCAAAGAAATGTTACTTA+AGG 0.421283 4_4:+54299895 Msa0688390:CDS
TCAGGAGCATCAAGTGGTCT+TGG 0.423419 4_4:+54299794 Msa0688390:intron
GTATCTTTGGCTAAAGAAGT+TGG 0.424566 4_4:-54302223 None:intergenic
CGGCACCATGGCTATTTCAA+TGG 0.427179 4_4:+54301489 Msa0688390:three_prime_UTR
CAAGCGCCTTGAAAGCTCAT+TGG 0.429868 4_4:-54301083 None:intergenic
TATCTTTGGCTAAAGAAGTT+GGG 0.430163 4_4:-54302222 None:intergenic
AATAAAATCTGTGCATCCAT+TGG 0.433029 4_4:+54300179 Msa0688390:three_prime_UTR
AAACTGTAAGGGAATGCAAC+CGG 0.434447 4_4:+54300752 Msa0688390:three_prime_UTR
AACTTGGTTCTTGAAATTGT+TGG 0.434767 4_4:-54300356 None:intergenic
AACAATTTCAAGAACCAAGT+TGG 0.449123 4_4:+54300358 Msa0688390:three_prime_UTR
GTGCATCCATTGGAATTTGT+AGG 0.458805 4_4:+54300189 Msa0688390:three_prime_UTR
TGTCAGAAGATCTAGATAGA+TGG 0.460126 4_4:+54300269 Msa0688390:three_prime_UTR
TGAGCTTTCAAGGCGCTTGA+AGG 0.461379 4_4:+54301087 Msa0688390:three_prime_UTR
CATCTCAAACCTGTAATGAA+TGG 0.462313 4_4:-54302440 None:intergenic
TTTCATTCAGAGTTAGTACT+TGG 0.466781 4_4:-54302548 None:intergenic
ATTGGTTGGAAAGGACCATC+TGG 0.466925 4_4:+54299622 Msa0688390:CDS
TACATGTTGTTATGGCAGTT+AGG 0.474096 4_4:+54299852 Msa0688390:CDS
ATGTGGTTTATTGGTTGGAA+AGG 0.477378 4_4:+54299613 Msa0688390:CDS
TAACAATTGTACCAGGATGA+AGG 0.477833 4_4:-54301455 None:intergenic
AAAACATCAATCTTAGCAGC+TGG 0.481983 4_4:-54299923 None:intergenic
ATAATATGAATCCATATGTA+TGG 0.484005 4_4:-54300044 None:intergenic
TCCTTTGTTTGACAGGAAGA+AGG 0.489471 4_4:+54301411 Msa0688390:intron
GCGTGGTGTACATGTTGTTA+TGG 0.496049 4_4:+54299844 Msa0688390:CDS
AATTCCATGAGTGACTTGTT+CGG 0.496592 4_4:-54299665 None:intergenic
GCAGTTTGCAACCAATCACT+TGG 0.498350 4_4:+54300556 Msa0688390:three_prime_UTR
TGCATCCATTGGAATTTGTA+GGG 0.502981 4_4:+54300190 Msa0688390:three_prime_UTR
TTGTCTTGAGAAAGCATGAA+TGG 0.505638 4_4:-54300524 None:intergenic
TTGTCTACAAAGTAGGTTTG+AGG 0.516166 4_4:+54302283 Msa0688390:three_prime_UTR
TGCATTGCATCCACAGGTCA+AGG 0.524363 4_4:+54302159 Msa0688390:three_prime_UTR
AAATTGGTACTTGAAATTGT+CGG 0.527541 4_4:+54300091 Msa0688390:three_prime_UTR
TGCAGCCATTGCTAATATGG+TGG 0.530297 4_4:+54301958 Msa0688390:intron
GCAGCCATTGCTAATATGGT+GGG 0.536064 4_4:+54301959 Msa0688390:intron
TCTCTCACTGCAATCATCAC+TGG 0.540397 4_4:+54299697 Msa0688390:CDS
AACTGTAAGGGAATGCAACC+GGG 0.543989 4_4:+54300753 Msa0688390:three_prime_UTR
TATATCTGGTGAATACTTTG+CGG 0.544760 4_4:+54302183 Msa0688390:three_prime_UTR
ACTGTTAACTCCCTTCATCC+TGG 0.557521 4_4:+54301444 Msa0688390:three_prime_UTR
GGGAATGCAACCGGGAAGGA+AGG 0.558048 4_4:+54300761 Msa0688390:three_prime_UTR
TTTAGCCAAAGATACAAAGC+TGG 0.558369 4_4:+54302231 Msa0688390:three_prime_UTR
CATTCATTACAGGTTTGAGA+TGG 0.558702 4_4:+54302441 Msa0688390:three_prime_UTR
TTACCTTGCATTGCATCCAC+AGG 0.567550 4_4:+54302153 Msa0688390:three_prime_UTR
TTAAAGATTTCGATAACGCA+AGG 0.569339 4_4:-54300131 None:intergenic
CAGTTTGCAACCAATCACTT+GGG 0.575672 4_4:+54300557 Msa0688390:three_prime_UTR
AACAATTGTACCAGGATGAA+GGG 0.577686 4_4:-54301454 None:intergenic
TCTAACAGTATACGATGCAA+TGG 0.583335 4_4:-54302521 None:intergenic
GATGCAATGGAATGCTACAA+TGG 0.583946 4_4:-54302508 None:intergenic
TAATTTGCTAATGATCGAGT+GGG 0.594217 4_4:-54302596 None:intergenic
ACTGCCGAACAAGTCACTCA+TGG 0.598804 4_4:+54299661 Msa0688390:CDS
TAAAGATTTCGATAACGCAA+GGG 0.601592 4_4:-54300130 None:intergenic
AGTGATGATTGCAGTGAGAG+AGG 0.602845 4_4:-54299695 None:intergenic
CTAGTCCCTACAAATTCCAA+TGG 0.603304 4_4:-54300195 None:intergenic
ATAATTTGCTAATGATCGAG+TGG 0.606772 4_4:-54302597 None:intergenic
ATATTTGTAACAATTGTACC+AGG 0.620073 4_4:-54301462 None:intergenic
TGTTACATTAGAATATTGAG+TGG 0.620095 4_4:-54300013 None:intergenic
ACAAATATTCTGCGGCACCA+TGG 0.621330 4_4:+54301477 Msa0688390:three_prime_UTR
TACTAGTAATAATGTTCCAG+TGG 0.626387 4_4:+54299425 Msa0688390:five_prime_UTR
GATAGTTATTGTATCATCAG+AGG 0.626892 4_4:+54300783 Msa0688390:three_prime_UTR
GAGTGAATAAATAACCAACT+TGG 0.630102 4_4:-54300372 None:intergenic
CTTGCCCACCATATTAGCAA+TGG 0.631089 4_4:-54301963 None:intergenic
CCAGATATACCCTTGACCTG+TGG 0.633382 4_4:-54302169 None:intergenic
GCATTGCATCCACAGGTCAA+GGG 0.636460 4_4:+54302160 Msa0688390:three_prime_UTR
ACTAACCATTGAAATAGCCA+TGG 0.642396 4_4:-54301494 None:intergenic
CAATTGTTACAAATATTCTG+CGG 0.643492 4_4:+54301469 Msa0688390:three_prime_UTR
AAGTAACAATGCAGGGACGA+TGG 0.645747 4_4:+54300496 Msa0688390:three_prime_UTR
GTCTTGGTCTGGAAACAACA+AGG 0.648423 4_4:+54299810 Msa0688390:CDS
GATGAAGCTGAGAATCCAGA+TGG 0.651050 4_4:-54299637 None:intergenic
ACAAGGATTCTTGCTATGCG+TGG 0.652761 4_4:+54299827 Msa0688390:CDS
GTAAGGGAATGCAACCGGGA+AGG 0.654933 4_4:+54300757 Msa0688390:three_prime_UTR
ATACTTTGCGGATAGCAACA+AGG 0.668282 4_4:+54302195 Msa0688390:three_prime_UTR
TGACCTGTGGATGCAATGCA+AGG 0.671162 4_4:-54302156 None:intergenic
AATATTGAGTGGAAGACCAG+AGG 0.674080 4_4:-54300002 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTATACCAAAAAAAAA+AGG + chr4_4:54299469-54299488 Msa0688390:five_prime_UTR 10.0%
!!! AAAAAAAAACTTAATTCTTT+TGG - chr4_4:54301672-54301691 None:intergenic 10.0%
!! TTATTTATCTTAATAACTAA+AGG - chr4_4:54301738-54301757 None:intergenic 10.0%
!! TATTAAGATAAATAAATAGT+TGG + chr4_4:54301743-54301762 Msa0688390:intron 10.0%
!!! TAATAAAAGTTGTTTCTTAA+TGG - chr4_4:54299456-54299475 None:intergenic 15.0%
!!! AAAGTATTTCCTTTTTTTTT+TGG - chr4_4:54299481-54299500 None:intergenic 15.0%
!!! TTAATGATTTGATTATTTTC+AGG + chr4_4:54299776-54299795 Msa0688390:intron 15.0%
!!! ATATTTCCAAATTTTACAAT+AGG + chr4_4:54301811-54301830 Msa0688390:intron 15.0%
!!! TATCAAAGAAATGTTACTTA+AGG + chr4_4:54299895-54299914 Msa0688390:CDS 20.0%
!! ATAATATGAATCCATATGTA+TGG - chr4_4:54300047-54300066 None:intergenic 20.0%
!!! GATCATTTTGTAATATTGAT+AGG + chr4_4:54300323-54300342 Msa0688390:three_prime_UTR 20.0%
!! AAGATATATGTTATAATGTG+AGG - chr4_4:54300599-54300618 None:intergenic 20.0%
!! ATGTACAAAACAAAAATTGA+AGG + chr4_4:54300664-54300683 Msa0688390:intron 20.0%
!!! AATATTTGATAGTATTTTGC+AGG + chr4_4:54300688-54300707 Msa0688390:intron 20.0%
!!! TTTTCATAGTCTCTAATAAA+AGG - chr4_4:54300732-54300751 None:intergenic 20.0%
!! TAAACTCGATATTAATAAGT+TGG - chr4_4:54301252-54301271 None:intergenic 20.0%
!!! AAAACTTAATTCTTTTGGTT+TGG - chr4_4:54301667-54301686 None:intergenic 20.0%
!! AATAACTAAAGGATAACTTT+GGG - chr4_4:54301727-54301746 None:intergenic 20.0%
!! TAATAACTAAAGGATAACTT+TGG - chr4_4:54301728-54301747 None:intergenic 20.0%
!! TAAGATCCTATTGTAAAATT+TGG - chr4_4:54301820-54301839 None:intergenic 20.0%
!! AAATTATGTACAACAATAAC+CGG - chr4_4:54301898-54301917 None:intergenic 20.0%
!! ACATTTTTACAGTCAAAACA+AGG - chr4_4:54299597-54299616 None:intergenic 25.0%
!!! TTGTTTTGACTGTAAAAATG+TGG + chr4_4:54299596-54299615 Msa0688390:exon 25.0%
! ACTGTAAAAATGTGGTTTAT+TGG + chr4_4:54299604-54299623 Msa0688390:exon 25.0%
! TAAAAATGTGGTTTATTGGT+TGG + chr4_4:54299608-54299627 Msa0688390:exon 25.0%
! TGTTACATTAGAATATTGAG+TGG - chr4_4:54300016-54300035 None:intergenic 25.0%
! ACAATTTCTAACCATACATA+TGG + chr4_4:54300033-54300052 Msa0688390:exon 25.0%
! TTTCGACTAAATACCTAAAT+TGG + chr4_4:54300075-54300094 Msa0688390:three_prime_UTR 25.0%
!! ACAATTTCAAGTACCAATTT+AGG - chr4_4:54300091-54300110 None:intergenic 25.0%
! AAATTGGTACTTGAAATTGT+CGG + chr4_4:54300091-54300110 Msa0688390:three_prime_UTR 25.0%
! AATCTGCAATCTATACATAA+AGG - chr4_4:54300439-54300458 None:intergenic 25.0%
! TTATGTATAGATTGCAGATT+TGG + chr4_4:54300439-54300458 Msa0688390:three_prime_UTR 25.0%
! ATATTAATTACCCAAGTGAT+TGG - chr4_4:54300570-54300589 None:intergenic 25.0%
! AGACTATGAAAAAAACTGTA+AGG + chr4_4:54300740-54300759 Msa0688390:three_prime_UTR 25.0%
! GACTATGAAAAAAACTGTAA+GGG + chr4_4:54300741-54300760 Msa0688390:three_prime_UTR 25.0%
!! ACAGATTTTCATATAGTGAA+GGG + chr4_4:54300809-54300828 Msa0688390:three_prime_UTR 25.0%
! AATCAGAGTAATTATCTAGT+TGG + chr4_4:54300857-54300876 Msa0688390:intron 25.0%
! GTGGGAAATTATAAAATTCT+GGG - chr4_4:54300988-54301007 None:intergenic 25.0%
! AGTGGGAAATTATAAAATTC+TGG - chr4_4:54300989-54301008 None:intergenic 25.0%
! TATCTGTAAAGAATCAAACA+GGG - chr4_4:54301013-54301032 None:intergenic 25.0%
! TCGTAAGATTCAATCTTATT+TGG + chr4_4:54301142-54301161 Msa0688390:intron 25.0%
! ATATTTGTAACAATTGTACC+AGG - chr4_4:54301465-54301484 None:intergenic 25.0%
! CAATTGTTACAAATATTCTG+CGG + chr4_4:54301469-54301488 Msa0688390:three_prime_UTR 25.0%
! TAATCAGCAATAGTTGAAAA+TGG - chr4_4:54301527-54301546 None:intergenic 25.0%
!! GATTAAGTATCCTTTTTGTT+TGG + chr4_4:54301542-54301561 Msa0688390:intron 25.0%
!!! TACATAATTTCTCCTTGTTT+TGG + chr4_4:54301908-54301927 Msa0688390:intron 25.0%
! ATGAACAAAAATCCAAAACA+AGG - chr4_4:54301923-54301942 None:intergenic 25.0%
! CAATTCAATTAGTAAAAAGC+TGG - chr4_4:54302096-54302115 None:intergenic 25.0%
!! GCTTTTTACTAATTGAATTG+TGG + chr4_4:54302096-54302115 Msa0688390:intron 25.0%
!! TTTTACTAATTGAATTGTGG+TGG + chr4_4:54302099-54302118 Msa0688390:intron 25.0%
!! ACTTAATTCCCATAGTTTTT+GGG - chr4_4:54302257-54302276 None:intergenic 25.0%
!! ATGTAAAACTTTTCATCACT+AGG - chr4_4:54302385-54302404 None:intergenic 25.0%
TACTAGTAATAATGTTCCAG+TGG + chr4_4:54299425-54299444 Msa0688390:five_prime_UTR 30.0%
! TTCATCTAACTCAGTTTTTG+AGG - chr4_4:54299756-54299775 None:intergenic 30.0%
AATTGGTACTTGAAATTGTC+GGG + chr4_4:54300092-54300111 Msa0688390:three_prime_UTR 30.0%
TAAAGATTTCGATAACGCAA+GGG - chr4_4:54300133-54300152 None:intergenic 30.0%
TTAAAGATTTCGATAACGCA+AGG - chr4_4:54300134-54300153 None:intergenic 30.0%
AATAAAATCTGTGCATCCAT+TGG + chr4_4:54300179-54300198 Msa0688390:three_prime_UTR 30.0%
!! TGATCTCTAGAATTGCTAAA+TGG - chr4_4:54300308-54300327 None:intergenic 30.0%
! AACTTGGTTCTTGAAATTGT+TGG - chr4_4:54300359-54300378 None:intergenic 30.0%
AACAATTTCAAGAACCAAGT+TGG + chr4_4:54300358-54300377 Msa0688390:three_prime_UTR 30.0%
GAGTGAATAAATAACCAACT+TGG - chr4_4:54300375-54300394 None:intergenic 30.0%
!!! TTCTTTTCAAGTAACAATGC+AGG + chr4_4:54300488-54300507 Msa0688390:three_prime_UTR 30.0%
!!! TCTTTTCAAGTAACAATGCA+GGG + chr4_4:54300489-54300508 Msa0688390:three_prime_UTR 30.0%
AAAGGTTTGTCAACAGAAAA+TGG - chr4_4:54300714-54300733 None:intergenic 30.0%
GATAGTTATTGTATCATCAG+AGG + chr4_4:54300783-54300802 Msa0688390:three_prime_UTR 30.0%
! CACAGATTTTCATATAGTGA+AGG + chr4_4:54300808-54300827 Msa0688390:three_prime_UTR 30.0%
GTATCTGTAAAGAATCAAAC+AGG - chr4_4:54301014-54301033 None:intergenic 30.0%
!! TACAGCAGTTATTTTGCTTA+TGG + chr4_4:54301031-54301050 Msa0688390:three_prime_UTR 30.0%
ATGCAAAATATTTGCAAGCT+TGG - chr4_4:54301062-54301081 None:intergenic 30.0%
! TGTGTTTAAAGCAGTCTTAT+GGG + chr4_4:54301222-54301241 Msa0688390:intron 30.0%
TGAAGCAGTCTATTTACAAT+GGG - chr4_4:54301326-54301345 None:intergenic 30.0%
TAAATAGACTGCTTCAGTAA+TGG + chr4_4:54301330-54301349 Msa0688390:intron 30.0%
TCAAACAAAGGAATATGCAA+GGG - chr4_4:54301403-54301422 None:intergenic 30.0%
!! GTATCCTTTTTGTTTGGAAT+AGG + chr4_4:54301548-54301567 Msa0688390:intron 30.0%
TCAATGGAGTCTTACAAATA+GGG - chr4_4:54301644-54301663 None:intergenic 30.0%
!!! AATTCTTTTGGTTTGGTCAA+TGG - chr4_4:54301660-54301679 None:intergenic 30.0%
!!! GTTGGTCTTTTAATTCTCTT+TGG + chr4_4:54301761-54301780 Msa0688390:intron 30.0%
TAGGATCTTACAAATAGAGA+CGG + chr4_4:54301830-54301849 Msa0688390:intron 30.0%
! ATACCTGTTGGACATTTTTA+AGG - chr4_4:54301994-54302013 None:intergenic 30.0%
TATATCTGGTGAATACTTTG+CGG + chr4_4:54302183-54302202 Msa0688390:three_prime_UTR 30.0%
TATCTTTGGCTAAAGAAGTT+GGG - chr4_4:54302225-54302244 None:intergenic 30.0%
! CACTTAATTCCCATAGTTTT+TGG - chr4_4:54302258-54302277 None:intergenic 30.0%
TGTAAGTTTGTCTACAAAGT+AGG + chr4_4:54302276-54302295 Msa0688390:three_prime_UTR 30.0%
TTTCATTCAGAGTTAGTACT+TGG - chr4_4:54302551-54302570 None:intergenic 30.0%
!! TAATTTGCTAATGATCGAGT+GGG - chr4_4:54302599-54302618 None:intergenic 30.0%
!! ATAATTTGCTAATGATCGAG+TGG - chr4_4:54302600-54302619 None:intergenic 30.0%
! ATGTGGTTTATTGGTTGGAA+AGG + chr4_4:54299613-54299632 Msa0688390:CDS 35.0%
!! AATTCCATGAGTGACTTGTT+CGG - chr4_4:54299668-54299687 None:intergenic 35.0%
!!! TTATTTTCAGGAGCATCAAG+TGG + chr4_4:54299788-54299807 Msa0688390:intron 35.0%
TACATGTTGTTATGGCAGTT+AGG + chr4_4:54299852-54299871 Msa0688390:CDS 35.0%
GCAGTTAGGAATGTGAAAAA+TGG + chr4_4:54299866-54299885 Msa0688390:CDS 35.0%
AAAACATCAATCTTAGCAGC+TGG - chr4_4:54299926-54299945 None:intergenic 35.0%
TGCATCCATTGGAATTTGTA+GGG + chr4_4:54300190-54300209 Msa0688390:three_prime_UTR 35.0%
TGTCAGAAGATCTAGATAGA+TGG + chr4_4:54300269-54300288 Msa0688390:three_prime_UTR 35.0%
! TTGTCTTGAGAAAGCATGAA+TGG - chr4_4:54300527-54300546 None:intergenic 35.0%
TCTTTCCTTTATCTGCTACA+AGG + chr4_4:54300901-54300920 Msa0688390:intron 35.0%
AAAGAATCAAACAGGGAAGT+GGG - chr4_4:54301006-54301025 None:intergenic 35.0%
TAAAGAATCAAACAGGGAAG+TGG - chr4_4:54301007-54301026 None:intergenic 35.0%
TTACCATCACGTTACTCTAA+CGG - chr4_4:54301173-54301192 None:intergenic 35.0%
! TAAGACTGCTTTAAACACAG+TGG - chr4_4:54301221-54301240 None:intergenic 35.0%
! CTGTGTTTAAAGCAGTCTTA+TGG + chr4_4:54301221-54301240 Msa0688390:intron 35.0%
CGAGTTTATTGAAATCCAAG+CGG + chr4_4:54301264-54301283 Msa0688390:intron 35.0%
CTGAAGCAGTCTATTTACAA+TGG - chr4_4:54301327-54301346 None:intergenic 35.0%
TGACTAGACGATGAACTTAT+TGG + chr4_4:54301360-54301379 Msa0688390:intron 35.0%
GTCAAACAAAGGAATATGCA+AGG - chr4_4:54301404-54301423 None:intergenic 35.0%
! TGCATATTCCTTTGTTTGAC+AGG + chr4_4:54301404-54301423 Msa0688390:intron 35.0%
AACAATTGTACCAGGATGAA+GGG - chr4_4:54301457-54301476 None:intergenic 35.0%
TAACAATTGTACCAGGATGA+AGG - chr4_4:54301458-54301477 None:intergenic 35.0%
ACTAACCATTGAAATAGCCA+TGG - chr4_4:54301497-54301516 None:intergenic 35.0%
CAGACCTATTCCAAACAAAA+AGG - chr4_4:54301555-54301574 None:intergenic 35.0%
AATAGGTCTGATGTCCTATT+CGG + chr4_4:54301565-54301584 Msa0688390:intron 35.0%
GTCAATGGAGTCTTACAAAT+AGG - chr4_4:54301645-54301664 None:intergenic 35.0%
TATGTACGAGTCATACTAAC+CGG + chr4_4:54301876-54301895 Msa0688390:intron 35.0%
! TTTTGCAGCCATTGCTAATA+TGG + chr4_4:54301955-54301974 Msa0688390:intron 35.0%
CTTCCTTAAAAATGTCCAAC+AGG + chr4_4:54301988-54302007 Msa0688390:three_prime_UTR 35.0%
ACTAAAAAATTGTGAGCCTG+TGG - chr4_4:54302021-54302040 None:intergenic 35.0%
GTATCTTTGGCTAAAGAAGT+TGG - chr4_4:54302226-54302245 None:intergenic 35.0%
TTTAGCCAAAGATACAAAGC+TGG + chr4_4:54302231-54302250 Msa0688390:three_prime_UTR 35.0%
TTGTCTACAAAGTAGGTTTG+AGG + chr4_4:54302283-54302302 Msa0688390:three_prime_UTR 35.0%
! TCAGAGTATCCATTCATTAC+AGG + chr4_4:54302431-54302450 Msa0688390:three_prime_UTR 35.0%
CATCTCAAACCTGTAATGAA+TGG - chr4_4:54302443-54302462 None:intergenic 35.0%
CATTCATTACAGGTTTGAGA+TGG + chr4_4:54302441-54302460 Msa0688390:three_prime_UTR 35.0%
TCTAACAGTATACGATGCAA+TGG - chr4_4:54302524-54302543 None:intergenic 35.0%
! TTTCTTAATGGATGCTCCAC+TGG - chr4_4:54299444-54299463 None:intergenic 40.0%
CAAGTCACTCATGGAATTGA+TGG + chr4_4:54299670-54299689 Msa0688390:CDS 40.0%
! TTAGCTCTTTCGCATCTGTT+AGG + chr4_4:54299957-54299976 Msa0688390:CDS 40.0%
!!! GCAGCAGATTTTAATTCCTC+TGG + chr4_4:54299986-54300005 Msa0688390:CDS 40.0%
AATATTGAGTGGAAGACCAG+AGG - chr4_4:54300005-54300024 None:intergenic 40.0%
GTGCATCCATTGGAATTTGT+AGG + chr4_4:54300189-54300208 Msa0688390:three_prime_UTR 40.0%
CTAGTCCCTACAAATTCCAA+TGG - chr4_4:54300198-54300217 None:intergenic 40.0%
CAGTTTGCAACCAATCACTT+GGG + chr4_4:54300557-54300576 Msa0688390:three_prime_UTR 40.0%
AAACTGTAAGGGAATGCAAC+CGG + chr4_4:54300752-54300771 Msa0688390:three_prime_UTR 40.0%
CAATAACTATCCTTCCTTCC+CGG - chr4_4:54300774-54300793 None:intergenic 40.0%
! ATGAGCCTTGTAGCAGATAA+AGG - chr4_4:54300909-54300928 None:intergenic 40.0%
AGCAGTCTATTTACAATGGG+AGG - chr4_4:54301323-54301342 None:intergenic 40.0%
! TCCTTTGTTTGACAGGAAGA+AGG + chr4_4:54301411-54301430 Msa0688390:intron 40.0%
TCCTTCTTCCTGTCAAACAA+AGG - chr4_4:54301415-54301434 None:intergenic 40.0%
ATACTTTGCGGATAGCAACA+AGG + chr4_4:54302195-54302214 Msa0688390:three_prime_UTR 40.0%
AAAGCTGGCCCAAAAACTAT+GGG + chr4_4:54302246-54302265 Msa0688390:three_prime_UTR 40.0%
GATGCAATGGAATGCTACAA+TGG - chr4_4:54302511-54302530 None:intergenic 40.0%
ATTGGTTGGAAAGGACCATC+TGG + chr4_4:54299622-54299641 Msa0688390:CDS 45.0%
GATGAAGCTGAGAATCCAGA+TGG - chr4_4:54299640-54299659 None:intergenic 45.0%
AGTGATGATTGCAGTGAGAG+AGG - chr4_4:54299698-54299717 None:intergenic 45.0%
TCTCTCACTGCAATCATCAC+TGG + chr4_4:54299697-54299716 Msa0688390:CDS 45.0%
GTCTTGGTCTGGAAACAACA+AGG + chr4_4:54299810-54299829 Msa0688390:CDS 45.0%
! ACAAGGATTCTTGCTATGCG+TGG + chr4_4:54299827-54299846 Msa0688390:CDS 45.0%
GCGTGGTGTACATGTTGTTA+TGG + chr4_4:54299844-54299863 Msa0688390:CDS 45.0%
AAGTAACAATGCAGGGACGA+TGG + chr4_4:54300496-54300515 Msa0688390:three_prime_UTR 45.0%
GCAGTTTGCAACCAATCACT+TGG + chr4_4:54300556-54300575 Msa0688390:three_prime_UTR 45.0%
AACTGTAAGGGAATGCAACC+GGG + chr4_4:54300753-54300772 Msa0688390:three_prime_UTR 45.0%
TGCATGCCAATGAGCTTTCA+AGG + chr4_4:54301077-54301096 Msa0688390:three_prime_UTR 45.0%
CAACCGTTAGAGTAACGTGA+TGG + chr4_4:54301167-54301186 Msa0688390:intron 45.0%
ACGTGATGGTAACTCGTTGA+CGG + chr4_4:54301181-54301200 Msa0688390:intron 45.0%
!! ACGAGCTATTTTCTTCCGCT+TGG - chr4_4:54301282-54301301 None:intergenic 45.0%
ACTGTTAACTCCCTTCATCC+TGG + chr4_4:54301444-54301463 Msa0688390:three_prime_UTR 45.0%
ACAAATATTCTGCGGCACCA+TGG + chr4_4:54301477-54301496 Msa0688390:three_prime_UTR 45.0%
TCTGATGTCCTATTCGGTTC+TGG + chr4_4:54301571-54301590 Msa0688390:intron 45.0%
! ATGTCCTATTCGGTTCTGGT+TGG + chr4_4:54301575-54301594 Msa0688390:intron 45.0%
ATGACCAACCAGAACCGAAT+AGG - chr4_4:54301582-54301601 None:intergenic 45.0%
! TCGGTTCTGGTTGGTCATAT+TGG + chr4_4:54301584-54301603 Msa0688390:intron 45.0%
TGCAGCCATTGCTAATATGG+TGG + chr4_4:54301958-54301977 Msa0688390:intron 45.0%
GCAGCCATTGCTAATATGGT+GGG + chr4_4:54301959-54301978 Msa0688390:intron 45.0%
CTTGCCCACCATATTAGCAA+TGG - chr4_4:54301966-54301985 None:intergenic 45.0%
! TCCAACAGGTATTTTGCCAC+AGG + chr4_4:54302002-54302021 Msa0688390:intron 45.0%
! TGTGGTGGCACTTCTTTTGT+AGG + chr4_4:54302114-54302133 Msa0688390:intron 45.0%
! GTGGTGGCACTTCTTTTGTA+GGG + chr4_4:54302115-54302134 Msa0688390:intron 45.0%
TTACCTTGCATTGCATCCAC+AGG + chr4_4:54302153-54302172 Msa0688390:three_prime_UTR 45.0%
! TTGGGCCAGCTTTGTATCTT+TGG - chr4_4:54302239-54302258 None:intergenic 45.0%
CAAAGCTGGCCCAAAAACTA+TGG + chr4_4:54302245-54302264 Msa0688390:three_prime_UTR 45.0%
ACTGCCGAACAAGTCACTCA+TGG + chr4_4:54299661-54299680 Msa0688390:CDS 50.0%
!! TCAGGAGCATCAAGTGGTCT+TGG + chr4_4:54299794-54299813 Msa0688390:intron 50.0%
! AGCATCAAGTGGTCTTGGTC+TGG + chr4_4:54299799-54299818 Msa0688390:CDS 50.0%
CAAGCGCCTTGAAAGCTCAT+TGG - chr4_4:54301086-54301105 None:intergenic 50.0%
! TGAGCTTTCAAGGCGCTTGA+AGG + chr4_4:54301087-54301106 Msa0688390:three_prime_UTR 50.0%
! CGGCACCATGGCTATTTCAA+TGG + chr4_4:54301489-54301508 Msa0688390:three_prime_UTR 50.0%
GCCTGTGGCAAAATACCTGT+TGG - chr4_4:54302006-54302025 None:intergenic 50.0%
TGACCTGTGGATGCAATGCA+AGG - chr4_4:54302159-54302178 None:intergenic 50.0%
TGCATTGCATCCACAGGTCA+AGG + chr4_4:54302159-54302178 Msa0688390:three_prime_UTR 50.0%
GCATTGCATCCACAGGTCAA+GGG + chr4_4:54302160-54302179 Msa0688390:three_prime_UTR 50.0%
CCAGATATACCCTTGACCTG+TGG - chr4_4:54302172-54302191 None:intergenic 50.0%
! CCACAGGTCAAGGGTATATC+TGG + chr4_4:54302169-54302188 Msa0688390:three_prime_UTR 50.0%
GTAAGGGAATGCAACCGGGA+AGG + chr4_4:54300757-54300776 Msa0688390:three_prime_UTR 55.0%
GGGAATGCAACCGGGAAGGA+AGG + chr4_4:54300761-54300780 Msa0688390:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 54299393 54302636 54299393 ID=Msa0688390;Name=Msa0688390
chr4_4 mRNA 54299393 54302636 54299393 ID=Msa0688390-mRNA-1;Parent=Msa0688390;Name=Msa0688390-mRNA-1;_AED=0.11;_eAED=0.11;_QI=220|1|1|1|1|0.85|7|1411|113
chr4_4 exon 54299393 54299718 54299393 ID=Msa0688390-mRNA-1:exon:14251;Parent=Msa0688390-mRNA-1
chr4_4 exon 54299798 54300578 54299798 ID=Msa0688390-mRNA-1:exon:14252;Parent=Msa0688390-mRNA-1
chr4_4 exon 54300710 54300863 54300710 ID=Msa0688390-mRNA-1:exon:14253;Parent=Msa0688390-mRNA-1
chr4_4 exon 54301030 54301108 54301030 ID=Msa0688390-mRNA-1:exon:14254;Parent=Msa0688390-mRNA-1
chr4_4 exon 54301426 54301510 54301426 ID=Msa0688390-mRNA-1:exon:14255;Parent=Msa0688390-mRNA-1
chr4_4 exon 54301963 54302009 54301963 ID=Msa0688390-mRNA-1:exon:14256;Parent=Msa0688390-mRNA-1
chr4_4 exon 54302136 54302636 54302136 ID=Msa0688390-mRNA-1:exon:14257;Parent=Msa0688390-mRNA-1
chr4_4 five_prime_UTR 54299393 54299612 54299393 ID=Msa0688390-mRNA-1:five_prime_utr;Parent=Msa0688390-mRNA-1
chr4_4 CDS 54299613 54299718 54299613 ID=Msa0688390-mRNA-1:cds;Parent=Msa0688390-mRNA-1
chr4_4 CDS 54299798 54300033 54299798 ID=Msa0688390-mRNA-1:cds;Parent=Msa0688390-mRNA-1
chr4_4 three_prime_UTR 54300034 54300578 54300034 ID=Msa0688390-mRNA-1:three_prime_utr;Parent=Msa0688390-mRNA-1
chr4_4 three_prime_UTR 54300710 54300863 54300710 ID=Msa0688390-mRNA-1:three_prime_utr;Parent=Msa0688390-mRNA-1
chr4_4 three_prime_UTR 54301030 54301108 54301030 ID=Msa0688390-mRNA-1:three_prime_utr;Parent=Msa0688390-mRNA-1
chr4_4 three_prime_UTR 54301426 54301510 54301426 ID=Msa0688390-mRNA-1:three_prime_utr;Parent=Msa0688390-mRNA-1
chr4_4 three_prime_UTR 54301963 54302009 54301963 ID=Msa0688390-mRNA-1:three_prime_utr;Parent=Msa0688390-mRNA-1
chr4_4 three_prime_UTR 54302136 54302636 54302136 ID=Msa0688390-mRNA-1:three_prime_utr;Parent=Msa0688390-mRNA-1
Gene Sequence

>Msa0688390

ATGTGGTTTATTGGTTGGAAAGGACCATCTGGATTCTCAGCTTCATCAACTGCCGAACAAGTCACTCATGGAATTGATGGAACCTCTCTCACTGCAATCATCACTGGAGCATCAAGTGGTCTTGGTCTGGAAACAACAAGGATTCTTGCTATGCGTGGTGTACATGTTGTTATGGCAGTTAGGAATGTGAAAAATGGTATAGATATCAAAGAAATGTTACTTAAGGAAATTCCAGCTGCTAAGATTGATGTTTTTGAGTTAGATCTTAGCTCTTTCGCATCTGTTAGGAAATTCGCAGCAGATTTTAATTCCTCTGGTCTTCCACTCAATATTCTAATGTAA

Protein sequence

>Msa0688390

MWFIGWKGPSGFSASSTAEQVTHGIDGTSLTAIITGASSGLGLETTRILAMRGVHVVMAVRNVKNGIDIKEMLLKEIPAAKIDVFELDLSSFASVRKFAADFNSSGLPLNILM*