AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0713400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713400 MtrunA17_Chr5g0400331 93.976 332 20 0 1 332 1 332 0.0 633
Msa0713400 MtrunA17_Chr8g0372601 54.459 314 137 3 18 331 23 330 3.25e-114 334
Msa0713400 MtrunA17_Chr5g0404721 53.398 309 137 3 24 331 28 330 3.49e-112 328
Msa0713400 MtrunA17_Chr4g0068621 49.673 306 147 2 26 331 38 336 5.24e-101 300
Msa0713400 MtrunA17_Chr1g0155611 51.307 306 145 2 26 331 46 347 1.62e-100 300
Msa0713400 MtrunA17_Chr3g0114451 47.432 331 161 3 1 331 1 318 4.98e-98 292
Msa0713400 MtrunA17_Chr3g0129051 49.836 305 138 4 26 328 28 319 5.49e-98 292
Msa0713400 MtrunA17_Chr5g0438021 48.624 327 153 4 7 331 12 325 1.90e-97 291
Msa0713400 MtrunA17_Chr7g0244461 47.896 309 148 3 23 331 17 312 4.49e-97 290
Msa0713400 MtrunA17_Chr2g0320071 45.619 331 166 4 1 331 1 317 1.39e-96 288
Msa0713400 MtrunA17_Chr3g0106921 49.359 312 142 6 23 331 22 320 2.24e-96 288
Msa0713400 MtrunA17_Chr4g0013171 50.000 308 139 4 26 331 27 321 1.83e-95 286
Msa0713400 MtrunA17_Chr2g0292091 47.419 310 159 2 22 331 20 325 8.91e-95 285
Msa0713400 MtrunA17_Chr2g0320101 45.619 331 166 5 1 331 1 317 2.05e-94 283
Msa0713400 MtrunA17_Chr2g0320061 45.808 334 162 6 1 331 1 318 2.46e-94 283
Msa0713400 MtrunA17_Chr7g0244451 48.867 309 145 3 23 331 21 316 3.20e-94 282
Msa0713400 MtrunA17_Chr2g0299691 49.673 306 143 5 30 331 60 358 4.09e-93 281
Msa0713400 MtrunA17_Chr2g0320051 45.317 331 168 4 1 331 1 318 4.58e-93 280
Msa0713400 MtrunA17_Chr4g0070951 47.883 307 154 3 26 331 28 329 5.84e-93 280
Msa0713400 MtrunA17_Chr4g0013191 47.500 320 157 3 12 331 32 340 5.98e-93 280
Msa0713400 MtrunA17_Chr3g0129061 49.026 308 142 4 26 331 28 322 6.07e-92 277
Msa0713400 MtrunA17_Chr4g0013181 48.525 305 142 5 29 331 62 353 1.37e-91 277
Msa0713400 MtrunA17_Chr7g0258811 46.906 307 158 3 26 331 69 371 1.42e-91 278
Msa0713400 MtrunA17_Chr2g0292101 47.302 315 160 3 17 331 18 326 2.93e-91 276
Msa0713400 MtrunA17_Chr1g0213061 46.626 326 156 6 8 331 12 321 5.07e-91 275
Msa0713400 MtrunA17_Chr4g0038151 45.260 327 170 2 5 331 4 321 5.76e-91 274
Msa0713400 MtrunA17_Chr2g0320091 45.846 325 160 5 10 331 7 318 7.10e-91 274
Msa0713400 MtrunA17_Chr2g0292181 47.351 302 155 2 30 331 42 339 1.20e-90 275
Msa0713400 MtrunA17_Chr2g0292261 47.059 306 158 2 26 331 29 330 2.19e-90 274
Msa0713400 MtrunA17_Chr5g0421411 49.129 287 135 4 50 331 5 285 3.15e-90 271
Msa0713400 MtrunA17_Chr4g0013201 45.794 321 159 4 12 331 32 338 3.36e-90 273
Msa0713400 MtrunA17_Chr1g0175561 46.205 303 158 3 30 331 28 326 6.31e-90 272
Msa0713400 MtrunA17_Chr3g0129041 47.024 336 159 7 1 331 1 322 2.14e-89 270
Msa0713400 MtrunA17_Chr4g0043391 45.317 331 166 5 4 331 6 324 3.23e-89 270
Msa0713400 MtrunA17_Chr2g0292211 44.109 331 181 2 1 331 15 341 6.97e-89 270
Msa0713400 MtrunA17_Chr5g0432441 48.710 310 142 5 26 331 30 326 1.16e-88 268
Msa0713400 MtrunA17_Chr4g0038161 46.602 309 150 3 26 331 24 320 1.53e-88 268
Msa0713400 MtrunA17_Chr4g0038171 47.386 306 153 2 26 331 24 321 2.44e-88 268
Msa0713400 MtrunA17_Chr2g0292241 46.689 302 157 2 30 331 33 330 7.85e-88 267
Msa0713400 MtrunA17_Chr3g0106901 47.095 327 153 4 6 331 16 323 4.51e-87 265
Msa0713400 MtrunA17_Chr2g0292251 46.254 307 159 4 26 331 28 329 5.23e-87 265
Msa0713400 MtrunA17_Chr2g0292271 46.026 302 159 2 30 331 33 330 6.05e-87 265
Msa0713400 MtrunA17_Chr2g0320031 43.202 331 176 4 1 331 1 319 1.45e-86 263
Msa0713400 MtrunA17_Chr2g0292151 45.338 311 156 3 26 331 29 330 5.57e-86 263
Msa0713400 MtrunA17_Chr7g0224371 45.538 325 162 5 7 331 13 322 1.89e-85 260
Msa0713400 MtrunA17_Chr2g0292291 45.724 304 160 3 29 331 33 332 3.09e-85 261
Msa0713400 MtrunA17_Chr5g0432351 46.602 309 150 6 26 331 25 321 5.96e-85 259
Msa0713400 MtrunA17_Chr5g0402571 45.277 307 160 4 26 331 27 326 1.93e-84 258
Msa0713400 MtrunA17_Chr5g0432331 47.097 310 147 7 26 331 56 352 2.07e-84 259
Msa0713400 MtrunA17_Chr2g0291751 43.413 334 182 3 1 331 1 330 3.75e-84 258
Msa0713400 MtrunA17_Chr2g0292111 45.455 308 152 5 30 331 33 330 8.10e-84 257
Msa0713400 MtrunA17_Chr5g0432341 46.278 309 151 6 26 331 25 321 6.66e-83 254
Msa0713400 MtrunA17_Chr5g0402581 45.603 307 159 4 26 331 27 326 7.97e-83 254
Msa0713400 MtrunA17_Chr6g0477071 40.964 332 171 7 4 331 32 342 1.38e-82 254
Msa0713400 MtrunA17_Chr4g0013721 44.371 302 159 4 30 331 104 396 3.08e-81 253
Msa0713400 MtrunA17_Chr1g0194151 42.643 333 179 5 4 331 8 333 1.87e-80 248
Msa0713400 MtrunA17_Chr1g0194271 41.888 339 180 4 4 331 8 340 3.96e-80 247
Msa0713400 MtrunA17_Chr3g0107881 42.638 326 173 5 9 331 10 324 7.05e-80 246
Msa0713400 MtrunA17_Chr4g0013821 43.421 304 159 5 30 331 32 324 1.42e-78 243
Msa0713400 MtrunA17_Chr5g0405991 41.088 331 180 7 1 331 1 316 4.69e-77 238
Msa0713400 MtrunA17_Chr1g0204011 41.867 332 176 9 3 331 5 322 5.06e-77 239
Msa0713400 MtrunA17_Chr4g0024121 41.104 326 181 5 6 331 12 326 1.82e-76 237
Msa0713400 MtrunA17_Chr1g0188431 40.785 331 179 6 1 331 14 327 2.65e-76 237
Msa0713400 MtrunA17_Chr3g0128061 41.194 335 184 6 1 331 1 326 4.21e-75 234
Msa0713400 MtrunA17_Chr8g0371381 42.671 307 162 7 26 331 26 319 1.71e-74 232
Msa0713400 MtrunA17_Chr2g0322861 42.244 303 167 5 30 331 91 386 7.96e-74 233
Msa0713400 MtrunA17_Chr4g0076211 44.884 303 152 7 30 331 45 333 2.61e-73 229
Msa0713400 MtrunA17_Chr7g0268501 41.830 306 168 4 26 331 25 320 1.35e-72 227
Msa0713400 MtrunA17_Chr7g0268521 41.830 306 168 4 26 331 25 320 1.35e-72 227
Msa0713400 MtrunA17_Chr4g0063671 43.396 318 164 7 19 331 14 320 4.09e-71 223
Msa0713400 MtrunA17_Chr7g0254231 40.066 302 165 5 30 331 26 311 4.22e-71 223
Msa0713400 MtrunA17_Chr2g0296621 43.831 308 157 9 25 331 49 341 2.03e-69 220
Msa0713400 MtrunA17_Chr4g0075241 36.970 330 199 6 3 331 6 327 2.93e-69 219
Msa0713400 MtrunA17_Chr6g0460711 41.391 302 165 6 30 331 25 314 6.13e-69 218
Msa0713400 MtrunA17_Chr1g0164891 42.157 306 167 6 30 331 93 392 6.16e-69 220
Msa0713400 MtrunA17_Chr7g0254201 40.066 302 168 5 30 331 24 312 1.62e-68 217
Msa0713400 MtrunA17_Chr1g0157051 40.000 325 180 9 7 330 7 317 3.89e-68 216
Msa0713400 MtrunA17_Chr2g0279041 39.939 328 184 6 7 331 8 325 4.01e-68 216
Msa0713400 MtrunA17_Chr2g0329641 39.286 336 182 7 7 331 11 335 8.30e-68 216
Msa0713400 MtrunA17_Chr7g0225221 37.349 332 195 5 1 331 1 320 2.93e-67 214
Msa0713400 MtrunA17_Chr5g0432401 37.798 336 147 7 2 330 5 285 1.13e-65 208
Msa0713400 MtrunA17_Chr1g0197411 36.890 328 197 6 3 327 6 326 2.54e-65 209
Msa0713400 MtrunA17_Chr4g0046131 40.127 314 177 6 19 327 35 342 4.14e-65 209
Msa0713400 MtrunA17_Chr6g0467251 37.037 324 184 7 6 327 19 324 4.41e-64 206
Msa0713400 MtrunA17_Chr8g0364291 37.898 314 175 5 26 331 23 324 5.68e-64 205
Msa0713400 MtrunA17_Chr3g0136751 38.671 331 194 5 1 331 1 322 5.79e-64 205
Msa0713400 MtrunA17_Chr1g0181431 37.500 312 179 5 23 331 25 323 8.14e-64 205
Msa0713400 MtrunA17_Chr6g0451571 38.065 310 179 6 26 331 34 334 1.60e-63 204
Msa0713400 MtrunA17_Chr6g0467161 37.217 309 174 6 26 331 45 336 2.96e-63 204
Msa0713400 MtrunA17_Chr1g0181511 36.102 313 185 4 22 331 23 323 4.12e-62 201
Msa0713400 MtrunA17_Chr1g0181481 36.102 313 185 5 22 331 23 323 3.53e-61 198
Msa0713400 MtrunA17_Chr6g0467121 36.688 308 175 6 26 331 74 363 5.19e-61 199
Msa0713400 MtrunA17_Chr1g0148021 37.500 328 189 8 8 331 13 328 8.77e-61 197
Msa0713400 MtrunA17_Chr5g0401431 35.629 334 205 5 1 330 1 328 2.54e-60 196
Msa0713400 MtrunA17_Chr4g0072091 38.689 305 175 6 26 327 24 319 6.74e-60 195
Msa0713400 MtrunA17_Chr2g0316791 35.882 340 179 8 20 327 70 402 1.01e-57 191
Msa0713400 MtrunA17_Chr2g0316831 35.000 340 182 8 20 327 106 438 5.52e-57 191
Msa0713400 MtrunA17_Chr2g0316481 35.000 340 182 7 20 327 70 402 7.45e-57 189
Msa0713400 MtrunA17_Chr2g0316191 34.311 341 184 7 20 327 70 403 1.31e-55 186
Msa0713400 MtrunA17_Chr2g0278671 38.924 316 180 8 20 331 17 323 2.32e-55 183
Msa0713400 MtrunA17_Chr5g0413051 38.854 314 175 10 26 331 73 377 7.15e-55 183
Msa0713400 MtrunA17_Chr4g0053871 37.255 306 176 7 26 327 27 320 1.27e-54 181
Msa0713400 MtrunA17_Chr4g0074851 35.484 310 183 6 26 331 32 328 1.97e-53 178
Msa0713400 MtrunA17_Chr3g0114461 46.341 205 97 4 127 331 1 192 2.57e-52 171
Msa0713400 MtrunA17_Chr2g0311251 33.236 343 189 8 20 330 5 339 4.92e-52 175
Msa0713400 MtrunA17_Chr2g0311241 31.332 383 180 10 19 327 53 426 4.92e-51 175
Msa0713400 MtrunA17_Chr2g0279061 40.226 266 144 7 70 331 12 266 1.85e-50 169
Msa0713400 MtrunA17_Chr2g0292281 43.662 213 106 4 119 331 18 216 1.83e-45 155
Msa0713400 MtrunA17_Chr2g0316811 38.494 239 134 5 20 256 44 271 1.81e-37 136
Msa0713400 MtrunA17_Chr3g0114491 52.800 125 59 0 9 133 1 125 1.41e-36 128
Msa0713400 MtrunA17_Chr4g0004591 30.183 328 159 5 25 330 76 355 3.08e-36 134
Msa0713400 MtrunA17_Chr2g0316141 34.058 276 163 10 70 331 9 279 5.34e-36 131
Msa0713400 MtrunA17_Chr2g0316181 34.058 276 163 10 70 331 9 279 5.34e-36 131
Msa0713400 MtrunA17_Chr3g0104101 39.241 158 63 5 190 331 9 149 7.76e-26 100
Msa0713400 MtrunA17_Chr1g0181491 43.925 107 58 2 29 135 15 119 5.58e-23 93.2
Msa0713400 MtrunA17_Chr1g0181501 30.303 198 123 4 137 331 4 189 1.03e-22 93.6
Msa0713400 MtrunA17_Chr5g0432321 39.370 127 66 3 147 273 17 132 1.92e-21 88.6
Msa0713400 MtrunA17_Chr6g0468731 61.972 71 23 2 65 135 22 88 1.45e-20 84.7
Msa0713400 MtrunA17_Chr7g0254181 38.400 125 72 3 69 192 2 122 2.17e-18 80.9
Msa0713400 MtrunA17_Chr7g0254171 35.766 137 81 3 72 205 4 136 2.65e-18 80.1
Msa0713400 MtrunA17_Chr1g0196191 58.209 67 27 1 68 134 27 92 2.10e-17 78.2
Msa0713400 MtrunA17_Chr4g0013811 48.611 72 37 0 137 208 6 77 5.82e-17 74.7
Msa0713400 MtrunA17_Chr7g0268491 37.931 87 50 1 245 331 15 97 7.49e-13 63.9
Msa0713400 MtrunA17_Chr5g0432361 39.785 93 48 3 241 330 21 108 5.16e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713400 AT2G35380.1 64.615 325 114 1 7 331 12 335 2.57e-155 439
Msa0713400 AT2G35380.2 66.397 247 83 0 85 331 1 247 5.71e-121 348
Msa0713400 AT5G66390.1 53.268 306 138 2 26 331 33 333 8.87e-111 326
Msa0713400 AT3G50990.1 52.614 306 140 3 26 331 41 341 5.86e-110 324
Msa0713400 AT2G18150.1 51.634 306 143 2 26 331 36 336 1.44e-106 315
Msa0713400 AT1G44970.1 52.941 306 140 3 26 331 45 346 1.03e-105 313
Msa0713400 AT4G36430.1 51.634 306 143 2 26 331 30 330 1.98e-104 309
Msa0713400 AT4G16270.1 50.809 309 141 5 26 331 48 348 4.27e-101 301
Msa0713400 AT2G18140.1 49.346 306 150 2 26 331 35 335 5.71e-100 298
Msa0713400 AT5G06720.1 46.319 326 170 3 6 331 13 333 5.14e-99 296
Msa0713400 AT1G68850.1 43.695 341 172 6 4 331 2 335 2.62e-93 281
Msa0713400 AT5G06730.1 43.252 326 180 3 6 331 14 334 4.26e-93 281
Msa0713400 AT5G58390.1 48.024 329 151 6 6 331 5 316 3.97e-92 277
Msa0713400 AT3G32980.1 45.253 316 169 2 17 331 22 334 2.63e-91 276
Msa0713400 AT5G19890.1 46.154 325 164 6 9 331 12 327 2.67e-91 276
Msa0713400 AT5G58400.1 47.416 329 153 7 6 331 14 325 3.11e-91 275
Msa0713400 AT2G38390.1 46.429 308 160 3 26 332 31 334 3.26e-89 271
Msa0713400 AT5G05340.1 46.104 308 151 5 26 331 30 324 4.08e-88 268
Msa0713400 AT3G49120.1 43.671 316 174 2 17 331 23 335 6.26e-88 268
Msa0713400 AT1G49570.1 46.557 305 158 3 26 329 48 348 1.96e-87 266
Msa0713400 AT3G49110.1 44.951 307 165 2 26 331 33 336 4.54e-87 266
Msa0713400 AT1G14550.1 42.296 331 173 6 4 331 6 321 7.25e-86 261
Msa0713400 AT2G38380.1 46.230 305 159 3 29 332 34 334 9.84e-86 262
Msa0713400 AT2G22420.1 43.598 328 170 5 4 331 7 319 1.53e-85 261
Msa0713400 AT4G08780.1 44.625 307 166 2 26 331 24 327 2.11e-85 261
Msa0713400 AT4G08770.1 45.277 307 164 2 26 331 24 327 2.01e-84 259
Msa0713400 AT1G14540.1 43.709 302 159 3 30 331 25 315 1.03e-83 256
Msa0713400 AT5G19880.1 44.277 332 172 5 3 331 8 329 3.14e-79 245
Msa0713400 AT3G03670.1 45.307 309 156 6 26 331 23 321 2.24e-78 243
Msa0713400 AT5G51890.1 42.249 329 172 10 8 331 7 322 9.57e-76 236
Msa0713400 AT2G41480.1 43.333 330 170 8 7 331 11 328 3.23e-74 232
Msa0713400 AT1G05260.1 42.020 307 170 5 26 331 26 325 7.16e-74 231
Msa0713400 AT5G64120.1 44.040 302 157 5 30 331 39 328 4.82e-73 229
Msa0713400 AT5G17820.1 42.384 302 158 6 30 331 28 313 1.44e-72 227
Msa0713400 AT4G33420.1 40.549 328 175 7 4 331 18 325 1.76e-72 228
Msa0713400 AT3G21770.1 40.385 312 179 5 17 327 19 324 2.56e-72 227
Msa0713400 AT4G33420.2 40.549 328 175 7 4 331 65 372 5.24e-72 228
Msa0713400 AT1G05240.1 41.801 311 169 6 24 331 24 325 3.85e-71 224
Msa0713400 AT1G05250.1 41.801 311 169 6 24 331 24 325 3.85e-71 224
Msa0713400 AT5G17820.2 42.384 302 158 6 30 331 81 366 5.43e-71 225
Msa0713400 AT5G15180.1 41.914 303 166 6 30 331 36 329 5.62e-71 224
Msa0713400 AT1G71695.1 40.656 305 165 6 26 327 44 335 1.23e-70 224
Msa0713400 AT4G11290.1 38.739 333 195 6 1 331 1 326 2.89e-70 222
Msa0713400 AT5G42180.1 41.159 328 175 7 4 330 6 316 9.28e-69 218
Msa0713400 AT2G39040.1 42.540 315 162 8 26 331 46 350 2.41e-68 218
Msa0713400 AT4G26010.1 41.914 303 156 6 30 331 26 309 3.14e-68 216
Msa0713400 AT5G47000.1 38.024 334 191 6 1 331 10 330 6.96e-68 216
Msa0713400 AT4G26010.2 41.914 303 156 6 30 331 54 337 7.64e-68 216
Msa0713400 AT4G31760.1 39.692 325 186 5 7 331 12 326 8.87e-68 215
Msa0713400 AT5G39580.1 41.867 332 179 8 1 331 1 319 9.17e-68 215
Msa0713400 AT5G64110.1 41.141 333 185 5 1 331 7 330 2.38e-67 214
Msa0713400 AT3G28200.1 37.987 308 177 4 26 331 21 316 1.78e-66 212
Msa0713400 AT3G01190.1 40.061 327 178 8 6 331 12 321 4.66e-66 211
Msa0713400 AT5G40150.1 38.961 308 175 5 26 331 32 328 2.57e-65 209
Msa0713400 AT1G34510.1 41.042 307 161 6 26 331 22 309 4.90e-65 208
Msa0713400 AT4G17690.1 40.000 310 169 6 26 331 26 322 5.16e-65 208
Msa0713400 AT1G24110.1 40.000 305 172 6 26 327 22 318 5.62e-65 208
Msa0713400 AT4G37530.1 39.744 312 179 4 23 331 24 329 1.03e-64 207
Msa0713400 AT4G37520.1 39.482 309 178 4 26 331 27 329 1.96e-64 207
Msa0713400 AT2G34060.1 41.100 309 169 7 26 328 42 343 3.01e-63 204
Msa0713400 AT2G18980.1 40.645 310 169 6 26 331 25 323 7.60e-63 202
Msa0713400 AT2G24800.1 40.323 310 170 6 26 331 31 329 9.39e-63 202
Msa0713400 AT4G25980.1 39.339 333 183 8 4 331 8 326 7.73e-62 200
Msa0713400 AT1G77100.1 39.940 333 178 8 6 331 2 319 8.57e-62 200
Msa0713400 AT4G37520.2 38.835 309 177 5 26 331 27 326 2.12e-61 199
Msa0713400 AT4G33870.1 35.693 339 172 6 26 327 68 397 7.21e-61 200
Msa0713400 AT2G43480.1 39.936 313 169 8 26 331 35 335 1.03e-60 197
Msa0713400 AT2G37130.2 37.013 308 176 6 29 331 2 296 6.32e-60 194
Msa0713400 AT2G37130.1 36.825 315 181 6 22 331 26 327 8.85e-60 195
Msa0713400 AT4G30170.1 38.535 314 176 8 23 331 24 325 2.22e-59 194
Msa0713400 AT5G14130.1 34.218 339 187 6 4 331 17 330 5.18e-59 193
Msa0713400 AT5G64100.1 41.447 304 163 6 30 331 41 331 6.81e-59 192
Msa0713400 AT5G24070.1 37.700 313 176 7 26 331 35 335 8.51e-59 192
Msa0713400 AT5G14130.2 34.218 339 187 6 4 331 58 371 2.26e-58 192
Msa0713400 AT3G49960.1 37.082 329 192 7 7 331 12 329 4.03e-58 191
Msa0713400 AT4G21960.1 37.419 310 177 5 26 331 31 327 3.97e-57 188
Msa0713400 AT5G67400.1 35.736 333 202 5 5 331 3 329 8.26e-57 187
Msa0713400 AT1G30870.1 39.355 310 171 8 25 331 50 345 1.86e-56 187
Msa0713400 AT3G17070.1 36.508 315 182 9 24 331 36 339 2.00e-55 184
Msa0713400 AT4G37530.2 39.615 260 149 5 23 278 24 279 2.42e-51 172
Msa0713400 AT5G22410.1 33.832 334 199 10 1 328 5 322 6.24e-50 169
Msa0713400 AT5G39580.2 43.636 220 115 6 1 217 1 214 1.19e-43 150
Msa0713400 AT4G25980.2 44.737 190 97 5 4 193 53 234 3.44e-41 145
Msa0713400 AT3G17070.2 34.035 285 169 10 54 331 4 276 2.08e-40 143
Msa0713400 AT2G24800.2 45.509 167 87 2 26 192 31 193 2.10e-37 134
Msa0713400 AT3G42570.1 34.459 148 82 4 46 191 13 147 2.59e-15 72.8
Msa0713400 AT4G32320.1 27.037 270 121 8 57 312 114 321 8.03e-13 68.9

Find 79 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGCCTCTAAAGATGAATT+TGG 0.209973 5_1:-5554119 None:intergenic
TGTCAAATATTCACACTCTA+AGG 0.214649 5_1:+5553229 Msa0713400:CDS
GGAAATATTAATGTTCTTAC+TGG 0.240350 5_1:+5554896 Msa0713400:CDS
TGCTCCAAATTCATCTTTAG+AGG 0.250110 5_1:+5554115 Msa0713400:CDS
AAGGATTAGGAGGCAGGTTT+GGG 0.252670 5_1:+5554814 Msa0713400:CDS
TTGTCATCCCTTCCGGTAAT+AGG 0.256822 5_1:-5554671 None:intergenic
GAAGGATTAGGAGGCAGGTT+TGG 0.274461 5_1:+5554813 Msa0713400:CDS
CCACGTAAAGAGTTCAAATT+TGG 0.287872 5_1:-5553620 None:intergenic
GTGCGATGCATCGGTACTTT+TGG 0.290206 5_1:+5553559 Msa0713400:CDS
AATTAATAATTTCAAGCAAC+AGG 0.312201 5_1:+5554142 Msa0713400:CDS
ATTGAAGGAAAAGGCATGTT+AGG 0.316810 5_1:+5554755 Msa0713400:CDS
GGGCAAGATGTTTAAGCTTC+AGG 0.349687 5_1:+5554555 Msa0713400:CDS
ACCAAGATGGGATGTGTGGC+TGG 0.353196 5_1:+5554040 Msa0713400:CDS
TGCAAATTTGTCATCCCTTC+CGG 0.355868 5_1:-5554678 None:intergenic
AATTTGGAGCAGGGATGAAT+AGG 0.364651 5_1:-5554103 None:intergenic
TATTGATTATCAAACCGTTT+TGG 0.372482 5_1:-5554719 None:intergenic
TTGTAGATTTGTCAACCCTT+AGG 0.373734 5_1:+5554943 Msa0713400:CDS
TAATTTCAAGCAACAGGGTC+TGG 0.383105 5_1:+5554148 Msa0713400:CDS
GAAGACCTGGTGGTTCTATC+AGG 0.386990 5_1:+5554176 Msa0713400:CDS
TGCTAAGTCTATGATTAAGA+TGG 0.404255 5_1:+5554874 Msa0713400:CDS
AAGACTTTGATGGAAGGATT+AGG 0.406088 5_1:+5554801 Msa0713400:CDS
ATCTTGCCCTTCCTATTGTA+TGG 0.411212 5_1:-5554541 None:intergenic
ATAAACATTATTGAAGGAAA+AGG 0.415090 5_1:+5554746 Msa0713400:CDS
CCTTCCGGTAATAGGACATA+TGG 0.429530 5_1:-5554663 None:intergenic
TTGATCAGTCAAGACTTTGA+TGG 0.433237 5_1:+5554791 Msa0713400:CDS
CGGTCCATATGTCCTATTAC+CGG 0.433238 5_1:+5554659 Msa0713400:CDS
TGCTCGTGATGCTGTTGAAT+TGG 0.436779 5_1:+5553727 Msa0713400:CDS
TGTAGATTTGTCAACCCTTA+GGG 0.445313 5_1:+5554944 Msa0713400:CDS
CCCAGCCACACATCCCATCT+TGG 0.449198 5_1:-5554041 None:intergenic
GATGTTTAAGCTTCAGGCAG+AGG 0.452364 5_1:+5554561 Msa0713400:CDS
TGATGGAAGGATTAGGAGGC+AGG 0.457704 5_1:+5554808 Msa0713400:CDS
TACTTCATAAACATTATTGA+AGG 0.460027 5_1:+5554740 Msa0713400:CDS
AAAGCAGGTAGCCATACAAT+AGG 0.462422 5_1:+5554530 Msa0713400:intron
GTCAAATATTCACACTCTAA+GGG 0.462872 5_1:+5553230 Msa0713400:CDS
GATAAAATATTTACTTGAAG+AGG 0.463463 5_1:+5553661 Msa0713400:CDS
GGATGTGTGGCTGGGGAGGA+AGG 0.466895 5_1:+5554049 Msa0713400:CDS
GCTAAGTCTATGATTAAGAT+GGG 0.481139 5_1:+5554875 Msa0713400:CDS
CAAGATGGGATGTGTGGCTG+GGG 0.483675 5_1:+5554042 Msa0713400:CDS
CCAAGATGGGATGTGTGGCT+GGG 0.493544 5_1:+5554041 Msa0713400:CDS
TCTAAAGATGAATTTGGAGC+AGG 0.507269 5_1:-5554113 None:intergenic
TTACCATAACAAAACAATCA+TGG 0.512399 5_1:-5553383 None:intergenic
TGAAGAGAGGAGGACCAAGA+TGG 0.516172 5_1:+5554027 Msa0713400:intron
GAAGTGAAGGTGAAATAAGA+AGG 0.517168 5_1:+5554918 Msa0713400:CDS
TCTCACTATCCCTTCAGCTA+AGG 0.524756 5_1:-5553295 None:intergenic
ATGTGCTGATATTCTTGCAA+TGG 0.525272 5_1:+5553703 Msa0713400:CDS
CTCACTATCCCTTCAGCTAA+GGG 0.526913 5_1:-5553294 None:intergenic
CCAAATTTGAACTCTTTACG+TGG 0.530593 5_1:+5553620 Msa0713400:CDS
CTCCACTGAAACTTGACTCA+AGG 0.531127 5_1:-5554076 None:intergenic
GATGGGATGTGTGGCTGGGG+AGG 0.531399 5_1:+5554045 Msa0713400:CDS
ATGACAAGTGAGAAAGAAGC+TGG 0.532451 5_1:+5553596 Msa0713400:CDS
TCTTGTTCATGATTACTACA+AGG 0.533843 5_1:+5553263 Msa0713400:CDS
GAAGAGAGGAGGACCAAGAT+GGG 0.542771 5_1:+5554028 Msa0713400:intron
TGGAGCAGGGATGAATAGGT+TGG 0.552780 5_1:-5554099 None:intergenic
TCCCTTGAGTCAAGTTTCAG+TGG 0.555521 5_1:+5554074 Msa0713400:CDS
ATATAAGGGGTGCGATGCAT+CGG 0.563534 5_1:+5553550 Msa0713400:intron
CAGGTAGCCATACAATAGGA+AGG 0.566467 5_1:+5554534 Msa0713400:intron
AATGTTCTTACTGGAAGTGA+AGG 0.567607 5_1:+5554905 Msa0713400:CDS
TCCACTGAAACTTGACTCAA+GGG 0.577180 5_1:-5554075 None:intergenic
GGGTCTGGATATTGAAGACC+TGG 0.580083 5_1:+5554163 Msa0713400:CDS
AGTAGCGACGCTGCTATACG+TGG 0.583453 5_1:-5553348 None:intergenic
ATTAATAATTTCAAGCAACA+GGG 0.589514 5_1:+5554143 Msa0713400:CDS
TCAGTCAAGACTTTGATGGA+AGG 0.590453 5_1:+5554795 Msa0713400:CDS
TCAAATATTCACACTCTAAG+GGG 0.598238 5_1:+5553231 Msa0713400:CDS
AGGATTAGGAGGCAGGTTTG+GGG 0.605235 5_1:+5554815 Msa0713400:CDS
ACTTTGATGGAAGGATTAGG+AGG 0.606364 5_1:+5554804 Msa0713400:CDS
CCATATGTCCTATTACCGGA+AGG 0.607440 5_1:+5554663 Msa0713400:CDS
CTAAAGATGAATTTGGAGCA+GGG 0.616673 5_1:-5554112 None:intergenic
TTTGGTGTTTGAAAATCAAG+GGG 0.635113 5_1:-5554701 None:intergenic
GGACCGTAGGACTCTTCTGA+AGG 0.636543 5_1:-5554642 None:intergenic
AGGTAGCCATACAATAGGAA+GGG 0.640133 5_1:+5554535 Msa0713400:intron
CATATGTCCTATTACCGGAA+GGG 0.646460 5_1:+5554664 Msa0713400:CDS
AAGATCAGTAATAGTCTCAG+AGG 0.648692 5_1:-5553195 None:intergenic
TAATAGGACATATGGACCGT+AGG 0.650725 5_1:-5554655 None:intergenic
CAACCTTCAGAAGAGTCCTA+CGG 0.678058 5_1:+5554639 Msa0713400:CDS
GAGGACCAAGATGGGATGTG+TGG 0.689019 5_1:+5554036 Msa0713400:CDS
TCTGGATATTGAAGACCTGG+TGG 0.695296 5_1:+5554166 Msa0713400:CDS
TCAGCACATGAAACAGTGAG+AGG 0.713764 5_1:-5553689 None:intergenic
ATATACCTGATAGAACCACC+AGG 0.735429 5_1:-5554181 None:intergenic
GATAGTGAGACATAACGTAG+CGG 0.771195 5_1:+5553308 Msa0713400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACATTGTTTATTTCA+TGG - chr5_1:5553990-5554009 None:intergenic 15.0%
!!! TGACAGTTTTAAATAAAATT+TGG - chr5_1:5554400-5554419 None:intergenic 15.0%
!! TTCTTACTAATTAATTAGAA+GGG + chr5_1:5554503-5554522 Msa0713400:intron 15.0%
!! AAAAAACATTGTTTATTTCA+TGG - chr5_1:5553990-5554009 None:intergenic 15.0%
!!! TGACAGTTTTAAATAAAATT+TGG - chr5_1:5554400-5554419 None:intergenic 15.0%
!! TTCTTACTAATTAATTAGAA+GGG + chr5_1:5554503-5554522 Msa0713400:intron 15.0%
!! GTTGTTGAAAATGAATATAA+GGG + chr5_1:5553536-5553555 Msa0713400:intron 20.0%
!! TTGTTGAAAATGAATATAAG+GGG + chr5_1:5553537-5553556 Msa0713400:intron 20.0%
!! GATAAAATATTTACTTGAAG+AGG + chr5_1:5553661-5553680 Msa0713400:CDS 20.0%
!! ATATTACTACATTGTTCATA+GGG + chr5_1:5553961-5553980 Msa0713400:intron 20.0%
!! AATTAATAATTTCAAGCAAC+AGG + chr5_1:5554142-5554161 Msa0713400:CDS 20.0%
!! ATTAATAATTTCAAGCAACA+GGG + chr5_1:5554143-5554162 Msa0713400:CDS 20.0%
!!! TACAATTTTTTGGACTAAAT+TGG - chr5_1:5554239-5554258 None:intergenic 20.0%
!! AATTTAGTCCAAAAAATTGT+AGG + chr5_1:5554238-5554257 Msa0713400:intron 20.0%
!! ATTTAGTCCAAAAAATTGTA+GGG + chr5_1:5554239-5554258 Msa0713400:intron 20.0%
!! TGTATTGAATCAAGATAATT+TGG - chr5_1:5554330-5554349 None:intergenic 20.0%
!! GTTCTTACTAATTAATTAGA+AGG + chr5_1:5554502-5554521 Msa0713400:intron 20.0%
!! TCTTACTAATTAATTAGAAG+GGG + chr5_1:5554504-5554523 Msa0713400:intron 20.0%
!! TACTTCATAAACATTATTGA+AGG + chr5_1:5554740-5554759 Msa0713400:CDS 20.0%
!! ATAAACATTATTGAAGGAAA+AGG + chr5_1:5554746-5554765 Msa0713400:CDS 20.0%
!!! AAAGAAAAGTTTTTCATTAG+AGG - chr5_1:5554846-5554865 None:intergenic 20.0%
!! GTTGTTGAAAATGAATATAA+GGG + chr5_1:5553536-5553555 Msa0713400:intron 20.0%
!! TTGTTGAAAATGAATATAAG+GGG + chr5_1:5553537-5553556 Msa0713400:intron 20.0%
!! GATAAAATATTTACTTGAAG+AGG + chr5_1:5553661-5553680 Msa0713400:CDS 20.0%
!! ATATTACTACATTGTTCATA+GGG + chr5_1:5553961-5553980 Msa0713400:intron 20.0%
!! AATTAATAATTTCAAGCAAC+AGG + chr5_1:5554142-5554161 Msa0713400:CDS 20.0%
!! ATTAATAATTTCAAGCAACA+GGG + chr5_1:5554143-5554162 Msa0713400:CDS 20.0%
!!! TACAATTTTTTGGACTAAAT+TGG - chr5_1:5554239-5554258 None:intergenic 20.0%
!! AATTTAGTCCAAAAAATTGT+AGG + chr5_1:5554238-5554257 Msa0713400:intron 20.0%
!! ATTTAGTCCAAAAAATTGTA+GGG + chr5_1:5554239-5554258 Msa0713400:intron 20.0%
!! TGTATTGAATCAAGATAATT+TGG - chr5_1:5554330-5554349 None:intergenic 20.0%
!! GTTCTTACTAATTAATTAGA+AGG + chr5_1:5554502-5554521 Msa0713400:intron 20.0%
!! TCTTACTAATTAATTAGAAG+GGG + chr5_1:5554504-5554523 Msa0713400:intron 20.0%
!! TACTTCATAAACATTATTGA+AGG + chr5_1:5554740-5554759 Msa0713400:CDS 20.0%
!! ATAAACATTATTGAAGGAAA+AGG + chr5_1:5554746-5554765 Msa0713400:CDS 20.0%
!!! AAAGAAAAGTTTTTCATTAG+AGG - chr5_1:5554846-5554865 None:intergenic 20.0%
! TTACCATAACAAAACAATCA+TGG - chr5_1:5553386-5553405 None:intergenic 25.0%
!! AATCTTGAAGTACTTATACA+TGG - chr5_1:5553413-5553432 None:intergenic 25.0%
! GGTTGTTGAAAATGAATATA+AGG + chr5_1:5553535-5553554 Msa0713400:intron 25.0%
! GAGTTCGGTTATTAAAAAAT+TGG - chr5_1:5553805-5553824 None:intergenic 25.0%
! GATATTACTACATTGTTCAT+AGG + chr5_1:5553960-5553979 Msa0713400:intron 25.0%
!! TGTTTTACCCTACAATTTTT+TGG - chr5_1:5554249-5554268 None:intergenic 25.0%
! CTTACTAATTAATTAGAAGG+GGG + chr5_1:5554505-5554524 Msa0713400:intron 25.0%
!!! TTTTGGTGTTTGAAAATCAA+GGG - chr5_1:5554705-5554724 None:intergenic 25.0%
!! TTGATTTTCAAACACCAAAA+CGG + chr5_1:5554705-5554724 Msa0713400:CDS 25.0%
!!! TATTGATTATCAAACCGTTT+TGG - chr5_1:5554722-5554741 None:intergenic 25.0%
! GGAAATATTAATGTTCTTAC+TGG + chr5_1:5554896-5554915 Msa0713400:CDS 25.0%
! TTACCATAACAAAACAATCA+TGG - chr5_1:5553386-5553405 None:intergenic 25.0%
!! AATCTTGAAGTACTTATACA+TGG - chr5_1:5553413-5553432 None:intergenic 25.0%
! GGTTGTTGAAAATGAATATA+AGG + chr5_1:5553535-5553554 Msa0713400:intron 25.0%
! GAGTTCGGTTATTAAAAAAT+TGG - chr5_1:5553805-5553824 None:intergenic 25.0%
! GATATTACTACATTGTTCAT+AGG + chr5_1:5553960-5553979 Msa0713400:intron 25.0%
!! TGTTTTACCCTACAATTTTT+TGG - chr5_1:5554249-5554268 None:intergenic 25.0%
! CTTACTAATTAATTAGAAGG+GGG + chr5_1:5554505-5554524 Msa0713400:intron 25.0%
!!! TTTTGGTGTTTGAAAATCAA+GGG - chr5_1:5554705-5554724 None:intergenic 25.0%
!! TTGATTTTCAAACACCAAAA+CGG + chr5_1:5554705-5554724 Msa0713400:CDS 25.0%
!!! TATTGATTATCAAACCGTTT+TGG - chr5_1:5554722-5554741 None:intergenic 25.0%
! GGAAATATTAATGTTCTTAC+TGG + chr5_1:5554896-5554915 Msa0713400:CDS 25.0%
TGTCAAATATTCACACTCTA+AGG + chr5_1:5553229-5553248 Msa0713400:CDS 30.0%
GTCAAATATTCACACTCTAA+GGG + chr5_1:5553230-5553249 Msa0713400:CDS 30.0%
TCAAATATTCACACTCTAAG+GGG + chr5_1:5553231-5553250 Msa0713400:CDS 30.0%
TCTTGTTCATGATTACTACA+AGG + chr5_1:5553263-5553282 Msa0713400:CDS 30.0%
!! CTTCCATGATTGTTTTGTTA+TGG + chr5_1:5553380-5553399 Msa0713400:CDS 30.0%
AATAATTGAAAACACCGTGT+AGG - chr5_1:5553478-5553497 None:intergenic 30.0%
! TTTTTGTCTGTCATACATTG+TGG + chr5_1:5553514-5553533 Msa0713400:intron 30.0%
AAGAAAAAGAGTAGAGAGAA+AGG - chr5_1:5553765-5553784 None:intergenic 30.0%
! TTCTCTCTACTCTTTTTCTT+TGG + chr5_1:5553765-5553784 Msa0713400:intron 30.0%
ATTGATTGAACTGTTCAGTT+CGG + chr5_1:5553899-5553918 Msa0713400:intron 30.0%
CTGCTATTAACTAGTTCAAT+TGG + chr5_1:5553938-5553957 Msa0713400:intron 30.0%
!!! CTATTGTTTGTTTTGAAGAG+AGG + chr5_1:5554014-5554033 Msa0713400:intron 30.0%
! AAAGCCTCTAAAGATGAATT+TGG - chr5_1:5554122-5554141 None:intergenic 30.0%
!! TTTGGTGTTTGAAAATCAAG+GGG - chr5_1:5554704-5554723 None:intergenic 30.0%
!!! GTTTTGGTGTTTGAAAATCA+AGG - chr5_1:5554706-5554725 None:intergenic 30.0%
TGCTAAGTCTATGATTAAGA+TGG + chr5_1:5554874-5554893 Msa0713400:CDS 30.0%
GCTAAGTCTATGATTAAGAT+GGG + chr5_1:5554875-5554894 Msa0713400:CDS 30.0%
TGTCAAATATTCACACTCTA+AGG + chr5_1:5553229-5553248 Msa0713400:CDS 30.0%
GTCAAATATTCACACTCTAA+GGG + chr5_1:5553230-5553249 Msa0713400:CDS 30.0%
TCAAATATTCACACTCTAAG+GGG + chr5_1:5553231-5553250 Msa0713400:CDS 30.0%
TCTTGTTCATGATTACTACA+AGG + chr5_1:5553263-5553282 Msa0713400:CDS 30.0%
!! CTTCCATGATTGTTTTGTTA+TGG + chr5_1:5553380-5553399 Msa0713400:CDS 30.0%
AATAATTGAAAACACCGTGT+AGG - chr5_1:5553478-5553497 None:intergenic 30.0%
! TTTTTGTCTGTCATACATTG+TGG + chr5_1:5553514-5553533 Msa0713400:intron 30.0%
AAGAAAAAGAGTAGAGAGAA+AGG - chr5_1:5553765-5553784 None:intergenic 30.0%
! TTCTCTCTACTCTTTTTCTT+TGG + chr5_1:5553765-5553784 Msa0713400:intron 30.0%
ATTGATTGAACTGTTCAGTT+CGG + chr5_1:5553899-5553918 Msa0713400:intron 30.0%
CTGCTATTAACTAGTTCAAT+TGG + chr5_1:5553938-5553957 Msa0713400:intron 30.0%
!!! CTATTGTTTGTTTTGAAGAG+AGG + chr5_1:5554014-5554033 Msa0713400:intron 30.0%
! AAAGCCTCTAAAGATGAATT+TGG - chr5_1:5554122-5554141 None:intergenic 30.0%
!! TTTGGTGTTTGAAAATCAAG+GGG - chr5_1:5554704-5554723 None:intergenic 30.0%
!!! GTTTTGGTGTTTGAAAATCA+AGG - chr5_1:5554706-5554725 None:intergenic 30.0%
TGCTAAGTCTATGATTAAGA+TGG + chr5_1:5554874-5554893 Msa0713400:CDS 30.0%
GCTAAGTCTATGATTAAGAT+GGG + chr5_1:5554875-5554894 Msa0713400:CDS 30.0%
AAGATCAGTAATAGTCTCAG+AGG - chr5_1:5553198-5553217 None:intergenic 35.0%
AAAAATGTCCCTTAGCTGAA+GGG + chr5_1:5553286-5553305 Msa0713400:CDS 35.0%
CCACGTAAAGAGTTCAAATT+TGG - chr5_1:5553623-5553642 None:intergenic 35.0%
CCAAATTTGAACTCTTTACG+TGG + chr5_1:5553620-5553639 Msa0713400:CDS 35.0%
! ATGTGCTGATATTCTTGCAA+TGG + chr5_1:5553703-5553722 Msa0713400:CDS 35.0%
TTTACTGCTGTTCGGTTATT+TGG - chr5_1:5553862-5553881 None:intergenic 35.0%
AACTGACATTTACTGCTGTT+CGG - chr5_1:5553870-5553889 None:intergenic 35.0%
!!! TTGTTTGTTTTGAAGAGAGG+AGG + chr5_1:5554017-5554036 Msa0713400:intron 35.0%
! CTAAAGATGAATTTGGAGCA+GGG - chr5_1:5554115-5554134 None:intergenic 35.0%
! TCTAAAGATGAATTTGGAGC+AGG - chr5_1:5554116-5554135 None:intergenic 35.0%
TGCTCCAAATTCATCTTTAG+AGG + chr5_1:5554115-5554134 Msa0713400:CDS 35.0%
! ATTGAAGGAAAAGGCATGTT+AGG + chr5_1:5554755-5554774 Msa0713400:CDS 35.0%
TTGATCAGTCAAGACTTTGA+TGG + chr5_1:5554791-5554810 Msa0713400:CDS 35.0%
AAGACTTTGATGGAAGGATT+AGG + chr5_1:5554801-5554820 Msa0713400:CDS 35.0%
AATGTTCTTACTGGAAGTGA+AGG + chr5_1:5554905-5554924 Msa0713400:CDS 35.0%
GAAGTGAAGGTGAAATAAGA+AGG + chr5_1:5554918-5554937 Msa0713400:CDS 35.0%
AAGATCAGTAATAGTCTCAG+AGG - chr5_1:5553198-5553217 None:intergenic 35.0%
AAAAATGTCCCTTAGCTGAA+GGG + chr5_1:5553286-5553305 Msa0713400:CDS 35.0%
CCACGTAAAGAGTTCAAATT+TGG - chr5_1:5553623-5553642 None:intergenic 35.0%
CCAAATTTGAACTCTTTACG+TGG + chr5_1:5553620-5553639 Msa0713400:CDS 35.0%
! ATGTGCTGATATTCTTGCAA+TGG + chr5_1:5553703-5553722 Msa0713400:CDS 35.0%
TTTACTGCTGTTCGGTTATT+TGG - chr5_1:5553862-5553881 None:intergenic 35.0%
AACTGACATTTACTGCTGTT+CGG - chr5_1:5553870-5553889 None:intergenic 35.0%
!!! TTGTTTGTTTTGAAGAGAGG+AGG + chr5_1:5554017-5554036 Msa0713400:intron 35.0%
! CTAAAGATGAATTTGGAGCA+GGG - chr5_1:5554115-5554134 None:intergenic 35.0%
! TCTAAAGATGAATTTGGAGC+AGG - chr5_1:5554116-5554135 None:intergenic 35.0%
TGCTCCAAATTCATCTTTAG+AGG + chr5_1:5554115-5554134 Msa0713400:CDS 35.0%
! ATTGAAGGAAAAGGCATGTT+AGG + chr5_1:5554755-5554774 Msa0713400:CDS 35.0%
TTGATCAGTCAAGACTTTGA+TGG + chr5_1:5554791-5554810 Msa0713400:CDS 35.0%
AAGACTTTGATGGAAGGATT+AGG + chr5_1:5554801-5554820 Msa0713400:CDS 35.0%
AATGTTCTTACTGGAAGTGA+AGG + chr5_1:5554905-5554924 Msa0713400:CDS 35.0%
GAAGTGAAGGTGAAATAAGA+AGG + chr5_1:5554918-5554937 Msa0713400:CDS 35.0%
GAAAAATGTCCCTTAGCTGA+AGG + chr5_1:5553285-5553304 Msa0713400:CDS 40.0%
GATAGTGAGACATAACGTAG+CGG + chr5_1:5553308-5553327 Msa0713400:CDS 40.0%
!! GTACTTTTGGACAGTGTTGA+GGG + chr5_1:5553572-5553591 Msa0713400:CDS 40.0%
ATGACAAGTGAGAAAGAAGC+TGG + chr5_1:5553596-5553615 Msa0713400:CDS 40.0%
! TGTTCGGTTATTTGGTGACT+CGG - chr5_1:5553854-5553873 None:intergenic 40.0%
TCCACTGAAACTTGACTCAA+GGG - chr5_1:5554078-5554097 None:intergenic 40.0%
! AATTTGGAGCAGGGATGAAT+AGG - chr5_1:5554106-5554125 None:intergenic 40.0%
TAATTTCAAGCAACAGGGTC+TGG + chr5_1:5554148-5554167 Msa0713400:CDS 40.0%
ATATACCTGATAGAACCACC+AGG - chr5_1:5554184-5554203 None:intergenic 40.0%
AATTAGAAGGGGGAAAAAGC+AGG + chr5_1:5554515-5554534 Msa0713400:intron 40.0%
AAAGCAGGTAGCCATACAAT+AGG + chr5_1:5554530-5554549 Msa0713400:intron 40.0%
AGGTAGCCATACAATAGGAA+GGG + chr5_1:5554535-5554554 Msa0713400:intron 40.0%
ATCTTGCCCTTCCTATTGTA+TGG - chr5_1:5554544-5554563 None:intergenic 40.0%
TAATAGGACATATGGACCGT+AGG - chr5_1:5554658-5554677 None:intergenic 40.0%
CATATGTCCTATTACCGGAA+GGG + chr5_1:5554664-5554683 Msa0713400:CDS 40.0%
TGCAAATTTGTCATCCCTTC+CGG - chr5_1:5554681-5554700 None:intergenic 40.0%
TCAGTCAAGACTTTGATGGA+AGG + chr5_1:5554795-5554814 Msa0713400:CDS 40.0%
ACTTTGATGGAAGGATTAGG+AGG + chr5_1:5554804-5554823 Msa0713400:CDS 40.0%
GAAAAATGTCCCTTAGCTGA+AGG + chr5_1:5553285-5553304 Msa0713400:CDS 40.0%
GATAGTGAGACATAACGTAG+CGG + chr5_1:5553308-5553327 Msa0713400:CDS 40.0%
!! GTACTTTTGGACAGTGTTGA+GGG + chr5_1:5553572-5553591 Msa0713400:CDS 40.0%
ATGACAAGTGAGAAAGAAGC+TGG + chr5_1:5553596-5553615 Msa0713400:CDS 40.0%
! TGTTCGGTTATTTGGTGACT+CGG - chr5_1:5553854-5553873 None:intergenic 40.0%
TCCACTGAAACTTGACTCAA+GGG - chr5_1:5554078-5554097 None:intergenic 40.0%
! AATTTGGAGCAGGGATGAAT+AGG - chr5_1:5554106-5554125 None:intergenic 40.0%
TAATTTCAAGCAACAGGGTC+TGG + chr5_1:5554148-5554167 Msa0713400:CDS 40.0%
ATATACCTGATAGAACCACC+AGG - chr5_1:5554184-5554203 None:intergenic 40.0%
AATTAGAAGGGGGAAAAAGC+AGG + chr5_1:5554515-5554534 Msa0713400:intron 40.0%
AAAGCAGGTAGCCATACAAT+AGG + chr5_1:5554530-5554549 Msa0713400:intron 40.0%
AGGTAGCCATACAATAGGAA+GGG + chr5_1:5554535-5554554 Msa0713400:intron 40.0%
ATCTTGCCCTTCCTATTGTA+TGG - chr5_1:5554544-5554563 None:intergenic 40.0%
TAATAGGACATATGGACCGT+AGG - chr5_1:5554658-5554677 None:intergenic 40.0%
CATATGTCCTATTACCGGAA+GGG + chr5_1:5554664-5554683 Msa0713400:CDS 40.0%
TGCAAATTTGTCATCCCTTC+CGG - chr5_1:5554681-5554700 None:intergenic 40.0%
TCAGTCAAGACTTTGATGGA+AGG + chr5_1:5554795-5554814 Msa0713400:CDS 40.0%
ACTTTGATGGAAGGATTAGG+AGG + chr5_1:5554804-5554823 Msa0713400:CDS 40.0%
CTCACTATCCCTTCAGCTAA+GGG - chr5_1:5553297-5553316 None:intergenic 45.0%
TCTCACTATCCCTTCAGCTA+AGG - chr5_1:5553298-5553317 None:intergenic 45.0%
! ATATAAGGGGTGCGATGCAT+CGG + chr5_1:5553550-5553569 Msa0713400:intron 45.0%
! GGTACTTTTGGACAGTGTTG+AGG + chr5_1:5553571-5553590 Msa0713400:CDS 45.0%
TCAGCACATGAAACAGTGAG+AGG - chr5_1:5553692-5553711 None:intergenic 45.0%
TGCTCGTGATGCTGTTGAAT+TGG + chr5_1:5553727-5553746 Msa0713400:CDS 45.0%
TTGCAGTTCGATGTCGAGTT+CGG - chr5_1:5553820-5553839 None:intergenic 45.0%
!! GTTATTTGGTGACTCGGTCA+TGG - chr5_1:5553848-5553867 None:intergenic 45.0%
TCCCTTGAGTCAAGTTTCAG+TGG + chr5_1:5554074-5554093 Msa0713400:CDS 45.0%
CTCCACTGAAACTTGACTCA+AGG - chr5_1:5554079-5554098 None:intergenic 45.0%
TCTGGATATTGAAGACCTGG+TGG + chr5_1:5554166-5554185 Msa0713400:CDS 45.0%
CAGGTAGCCATACAATAGGA+AGG + chr5_1:5554534-5554553 Msa0713400:intron 45.0%
GGGCAAGATGTTTAAGCTTC+AGG + chr5_1:5554555-5554574 Msa0713400:CDS 45.0%
GATGTTTAAGCTTCAGGCAG+AGG + chr5_1:5554561-5554580 Msa0713400:CDS 45.0%
CAACCTTCAGAAGAGTCCTA+CGG + chr5_1:5554639-5554658 Msa0713400:CDS 45.0%
CGGTCCATATGTCCTATTAC+CGG + chr5_1:5554659-5554678 Msa0713400:CDS 45.0%
CCTTCCGGTAATAGGACATA+TGG - chr5_1:5554666-5554685 None:intergenic 45.0%
CCATATGTCCTATTACCGGA+AGG + chr5_1:5554663-5554682 Msa0713400:CDS 45.0%
TTGTCATCCCTTCCGGTAAT+AGG - chr5_1:5554674-5554693 None:intergenic 45.0%
AAGGATTAGGAGGCAGGTTT+GGG + chr5_1:5554814-5554833 Msa0713400:CDS 45.0%
CTCACTATCCCTTCAGCTAA+GGG - chr5_1:5553297-5553316 None:intergenic 45.0%
TCTCACTATCCCTTCAGCTA+AGG - chr5_1:5553298-5553317 None:intergenic 45.0%
! ATATAAGGGGTGCGATGCAT+CGG + chr5_1:5553550-5553569 Msa0713400:intron 45.0%
! GGTACTTTTGGACAGTGTTG+AGG + chr5_1:5553571-5553590 Msa0713400:CDS 45.0%
TCAGCACATGAAACAGTGAG+AGG - chr5_1:5553692-5553711 None:intergenic 45.0%
TGCTCGTGATGCTGTTGAAT+TGG + chr5_1:5553727-5553746 Msa0713400:CDS 45.0%
TTGCAGTTCGATGTCGAGTT+CGG - chr5_1:5553820-5553839 None:intergenic 45.0%
!! GTTATTTGGTGACTCGGTCA+TGG - chr5_1:5553848-5553867 None:intergenic 45.0%
TCCCTTGAGTCAAGTTTCAG+TGG + chr5_1:5554074-5554093 Msa0713400:CDS 45.0%
CTCCACTGAAACTTGACTCA+AGG - chr5_1:5554079-5554098 None:intergenic 45.0%
TCTGGATATTGAAGACCTGG+TGG + chr5_1:5554166-5554185 Msa0713400:CDS 45.0%
CAGGTAGCCATACAATAGGA+AGG + chr5_1:5554534-5554553 Msa0713400:intron 45.0%
GGGCAAGATGTTTAAGCTTC+AGG + chr5_1:5554555-5554574 Msa0713400:CDS 45.0%
GATGTTTAAGCTTCAGGCAG+AGG + chr5_1:5554561-5554580 Msa0713400:CDS 45.0%
CAACCTTCAGAAGAGTCCTA+CGG + chr5_1:5554639-5554658 Msa0713400:CDS 45.0%
CGGTCCATATGTCCTATTAC+CGG + chr5_1:5554659-5554678 Msa0713400:CDS 45.0%
CCTTCCGGTAATAGGACATA+TGG - chr5_1:5554666-5554685 None:intergenic 45.0%
CCATATGTCCTATTACCGGA+AGG + chr5_1:5554663-5554682 Msa0713400:CDS 45.0%
TTGTCATCCCTTCCGGTAAT+AGG - chr5_1:5554674-5554693 None:intergenic 45.0%
AAGGATTAGGAGGCAGGTTT+GGG + chr5_1:5554814-5554833 Msa0713400:CDS 45.0%
!! GTGCGATGCATCGGTACTTT+TGG + chr5_1:5553559-5553578 Msa0713400:CDS 50.0%
TGAAGAGAGGAGGACCAAGA+TGG + chr5_1:5554027-5554046 Msa0713400:intron 50.0%
GAAGAGAGGAGGACCAAGAT+GGG + chr5_1:5554028-5554047 Msa0713400:intron 50.0%
TGGAGCAGGGATGAATAGGT+TGG - chr5_1:5554102-5554121 None:intergenic 50.0%
GGGTCTGGATATTGAAGACC+TGG + chr5_1:5554163-5554182 Msa0713400:CDS 50.0%
! GAAGACCTGGTGGTTCTATC+AGG + chr5_1:5554176-5554195 Msa0713400:CDS 50.0%
TGATGGAAGGATTAGGAGGC+AGG + chr5_1:5554808-5554827 Msa0713400:CDS 50.0%
GAAGGATTAGGAGGCAGGTT+TGG + chr5_1:5554813-5554832 Msa0713400:CDS 50.0%
AGGATTAGGAGGCAGGTTTG+GGG + chr5_1:5554815-5554834 Msa0713400:CDS 50.0%
!! GTGCGATGCATCGGTACTTT+TGG + chr5_1:5553559-5553578 Msa0713400:CDS 50.0%
TGAAGAGAGGAGGACCAAGA+TGG + chr5_1:5554027-5554046 Msa0713400:intron 50.0%
GAAGAGAGGAGGACCAAGAT+GGG + chr5_1:5554028-5554047 Msa0713400:intron 50.0%
TGGAGCAGGGATGAATAGGT+TGG - chr5_1:5554102-5554121 None:intergenic 50.0%
GGGTCTGGATATTGAAGACC+TGG + chr5_1:5554163-5554182 Msa0713400:CDS 50.0%
! GAAGACCTGGTGGTTCTATC+AGG + chr5_1:5554176-5554195 Msa0713400:CDS 50.0%
TGATGGAAGGATTAGGAGGC+AGG + chr5_1:5554808-5554827 Msa0713400:CDS 50.0%
GAAGGATTAGGAGGCAGGTT+TGG + chr5_1:5554813-5554832 Msa0713400:CDS 50.0%
AGGATTAGGAGGCAGGTTTG+GGG + chr5_1:5554815-5554834 Msa0713400:CDS 50.0%
AGTAGCGACGCTGCTATACG+TGG - chr5_1:5553351-5553370 None:intergenic 55.0%
GTAGGTCTAGCGCAAGTGGT+TGG - chr5_1:5553460-5553479 None:intergenic 55.0%
CCACTTGCGCTAGACCTACA+CGG + chr5_1:5553461-5553480 Msa0713400:intron 55.0%
GAGGACCAAGATGGGATGTG+TGG + chr5_1:5554036-5554055 Msa0713400:CDS 55.0%
ACCAAGATGGGATGTGTGGC+TGG + chr5_1:5554040-5554059 Msa0713400:CDS 55.0%
CCAAGATGGGATGTGTGGCT+GGG + chr5_1:5554041-5554060 Msa0713400:CDS 55.0%
CAAGATGGGATGTGTGGCTG+GGG + chr5_1:5554042-5554061 Msa0713400:CDS 55.0%
GGACCGTAGGACTCTTCTGA+AGG - chr5_1:5554645-5554664 None:intergenic 55.0%
AGTAGCGACGCTGCTATACG+TGG - chr5_1:5553351-5553370 None:intergenic 55.0%
GTAGGTCTAGCGCAAGTGGT+TGG - chr5_1:5553460-5553479 None:intergenic 55.0%
CCACTTGCGCTAGACCTACA+CGG + chr5_1:5553461-5553480 Msa0713400:intron 55.0%
GAGGACCAAGATGGGATGTG+TGG + chr5_1:5554036-5554055 Msa0713400:CDS 55.0%
ACCAAGATGGGATGTGTGGC+TGG + chr5_1:5554040-5554059 Msa0713400:CDS 55.0%
CCAAGATGGGATGTGTGGCT+GGG + chr5_1:5554041-5554060 Msa0713400:CDS 55.0%
CAAGATGGGATGTGTGGCTG+GGG + chr5_1:5554042-5554061 Msa0713400:CDS 55.0%
GGACCGTAGGACTCTTCTGA+AGG - chr5_1:5554645-5554664 None:intergenic 55.0%
CCGTGTAGGTCTAGCGCAAG+TGG - chr5_1:5553464-5553483 None:intergenic 60.0%
CCCAGCCACACATCCCATCT+TGG - chr5_1:5554044-5554063 None:intergenic 60.0%
CCGTGTAGGTCTAGCGCAAG+TGG - chr5_1:5553464-5553483 None:intergenic 60.0%
CCCAGCCACACATCCCATCT+TGG - chr5_1:5554044-5554063 None:intergenic 60.0%
GATGGGATGTGTGGCTGGGG+AGG + chr5_1:5554045-5554064 Msa0713400:CDS 65.0%
GGATGTGTGGCTGGGGAGGA+AGG + chr5_1:5554049-5554068 Msa0713400:CDS 65.0%
GATGGGATGTGTGGCTGGGG+AGG + chr5_1:5554045-5554064 Msa0713400:CDS 65.0%
GGATGTGTGGCTGGGGAGGA+AGG + chr5_1:5554049-5554068 Msa0713400:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 5553189 5554964 5553189 ID=Msa0713400;Name=Msa0713400
chr5_1 mRNA 5553189 5554964 5553189 ID=Msa0713400-mRNA-1;Parent=Msa0713400;Name=Msa0713400-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|4|0|332
chr5_1 exon 5553189 5553401 5553189 ID=Msa0713400-mRNA-1:exon:2411;Parent=Msa0713400-mRNA-1
chr5_1 exon 5553557 5553748 5553557 ID=Msa0713400-mRNA-1:exon:2412;Parent=Msa0713400-mRNA-1
chr5_1 exon 5554032 5554197 5554032 ID=Msa0713400-mRNA-1:exon:2413;Parent=Msa0713400-mRNA-1
chr5_1 exon 5554537 5554964 5554537 ID=Msa0713400-mRNA-1:exon:2414;Parent=Msa0713400-mRNA-1
chr5_1 CDS 5553189 5553401 5553189 ID=Msa0713400-mRNA-1:cds;Parent=Msa0713400-mRNA-1
chr5_1 CDS 5553557 5553748 5553557 ID=Msa0713400-mRNA-1:cds;Parent=Msa0713400-mRNA-1
chr5_1 CDS 5554032 5554197 5554032 ID=Msa0713400-mRNA-1:cds;Parent=Msa0713400-mRNA-1
chr5_1 CDS 5554537 5554964 5554537 ID=Msa0713400-mRNA-1:cds;Parent=Msa0713400-mRNA-1
Gene Sequence

>Msa0713400

ATGGAGCCTCTGAGACTATTACTGATCTTAATTACTGTTTTGTCAAATATTCACACTCTAAGGGGTAGTGAACTTCTTGTTCATGATTACTACAAGGAAAAATGTCCCTTAGCTGAAGGGATAGTGAGACATAACGTAGCGGTAGAAGTTTTAAAAGATCCACGTATAGCAGCGTCGCTACTTCGATTACACTTCCATGATTGTTTTGTTATGGGGTGCGATGCATCGGTACTTTTGGACAGTGTTGAGGGAATGACAAGTGAGAAAGAAGCTGGACCAAATTTGAACTCTTTACGTGGATTTGAAGTCATTGACAAGATAAAATATTTACTTGAAGAGGAATGTCCTCTCACTGTTTCATGTGCTGATATTCTTGCAATGGTTGCTCGTGATGCTGTTGAATTGAGAGGAGGACCAAGATGGGATGTGTGGCTGGGGAGGAAGGACTCCCTTGAGTCAAGTTTCAGTGGAGCCAACCTATTCATCCCTGCTCCAAATTCATCTTTAGAGGCTTTAATTAATAATTTCAAGCAACAGGGTCTGGATATTGAAGACCTGGTGGTTCTATCAGGTAGCCATACAATAGGAAGGGCAAGATGTTTAAGCTTCAGGCAGAGGATCTATGAAACAAAACATGAATACAACAATGACTATGATCGCTACAAACGATACACAACCTTCAGAAGAGTCCTACGGTCCATATGTCCTATTACCGGAAGGGATGACAAATTTGCACCCCTTGATTTTCAAACACCAAAACGGTTTGATAATCAATACTTCATAAACATTATTGAAGGAAAAGGCATGTTAGGTTCTGATAATGTTTTGATCAGTCAAGACTTTGATGGAAGGATTAGGAGGCAGGTTTGGGGTTATGCCTCTAATGAAAAACTTTTCTTTGATTCTTTTGCTAAGTCTATGATTAAGATGGGAAATATTAATGTTCTTACTGGAAGTGAAGGTGAAATAAGAAGGAATTGTAGATTTGTCAACCCTTAG
Protein sequence

>Msa0713400

MEPLRLLLILITVLSNIHTLRGSELLVHDYYKEKCPLAEGIVRHNVAVEVLKDPRIAASLLRLHFHDCFVMGCDASVLLDSVEGMTSEKEAGPNLNSLRGFEVIDKIKYLLEEECPLTVSCADILAMVARDAVELRGGPRWDVWLGRKDSLESSFSGANLFIPAPNSSLEALINNFKQQGLDIEDLVVLSGSHTIGRARCLSFRQRIYETKHEYNNDYDRYKRYTTFRRVLRSICPITGRDDKFAPLDFQTPKRFDNQYFINIIEGKGMLGSDNVLISQDFDGRIRRQVWGYASNEKLFFDSFAKSMIKMGNINVLTGSEGEIRRNCRFVNP*