AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0755470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0755470 MtrunA17_Chr5g0400331 93.976 332 20 0 1 332 1 332 0.0 632
Msa0755470 MtrunA17_Chr8g0372601 54.459 314 137 3 18 331 23 330 5.43e-114 333
Msa0755470 MtrunA17_Chr5g0404721 53.398 309 137 3 24 331 28 330 7.09e-112 328
Msa0755470 MtrunA17_Chr4g0068621 49.673 306 147 2 26 331 38 336 8.83e-101 300
Msa0755470 MtrunA17_Chr1g0155611 51.961 306 143 2 26 331 46 347 1.05e-100 300
Msa0755470 MtrunA17_Chr3g0114451 47.432 331 161 3 1 331 1 318 8.97e-98 291
Msa0755470 MtrunA17_Chr3g0129051 49.836 305 138 4 26 328 28 319 1.14e-97 291
Msa0755470 MtrunA17_Chr7g0244461 48.220 309 147 3 23 331 17 312 1.69e-97 291
Msa0755470 MtrunA17_Chr5g0438021 48.624 327 153 4 7 331 12 325 2.99e-97 290
Msa0755470 MtrunA17_Chr2g0320071 45.921 331 165 4 1 331 1 317 4.20e-97 290
Msa0755470 MtrunA17_Chr3g0106921 49.359 312 142 6 23 331 22 320 4.96e-96 287
Msa0755470 MtrunA17_Chr2g0292091 48.065 310 157 2 22 331 20 325 2.44e-95 286
Msa0755470 MtrunA17_Chr4g0013171 50.000 308 139 4 26 331 27 321 3.18e-95 285
Msa0755470 MtrunA17_Chr2g0320101 45.921 331 165 5 1 331 1 317 7.78e-95 284
Msa0755470 MtrunA17_Chr2g0320061 46.108 334 161 6 1 331 1 318 8.39e-95 284
Msa0755470 MtrunA17_Chr7g0244451 49.191 309 144 3 23 331 21 316 1.54e-94 283
Msa0755470 MtrunA17_Chr2g0320051 45.619 331 167 4 1 331 1 318 1.72e-93 281
Msa0755470 MtrunA17_Chr4g0013191 48.125 320 155 3 12 331 32 340 2.00e-93 281
Msa0755470 MtrunA17_Chr2g0299691 49.673 306 143 5 30 331 60 358 6.18e-93 281
Msa0755470 MtrunA17_Chr4g0070951 47.883 307 154 3 26 331 28 329 9.12e-93 279
Msa0755470 MtrunA17_Chr3g0129061 49.026 308 142 4 26 331 28 322 9.18e-92 276
Msa0755470 MtrunA17_Chr7g0258811 47.231 307 157 3 26 331 69 371 9.50e-92 278
Msa0755470 MtrunA17_Chr4g0013181 48.525 305 142 5 29 331 62 353 2.39e-91 276
Msa0755470 MtrunA17_Chr4g0038151 45.566 327 169 2 5 331 4 321 2.61e-91 275
Msa0755470 MtrunA17_Chr2g0320091 46.154 325 159 5 10 331 7 318 3.01e-91 275
Msa0755470 MtrunA17_Chr2g0292101 47.302 315 160 3 17 331 18 326 5.21e-91 275
Msa0755470 MtrunA17_Chr4g0013201 46.417 321 157 4 12 331 32 338 5.86e-91 275
Msa0755470 MtrunA17_Chr1g0213061 46.626 326 156 6 8 331 12 321 7.75e-91 274
Msa0755470 MtrunA17_Chr2g0292261 47.386 306 157 2 26 331 29 330 1.02e-90 275
Msa0755470 MtrunA17_Chr2g0292181 47.351 302 155 2 30 331 42 339 2.40e-90 274
Msa0755470 MtrunA17_Chr1g0175561 46.535 303 157 3 30 331 28 326 2.86e-90 273
Msa0755470 MtrunA17_Chr5g0421411 48.780 287 136 4 50 331 5 285 1.15e-89 270
Msa0755470 MtrunA17_Chr4g0043391 45.619 331 165 5 4 331 6 324 1.23e-89 271
Msa0755470 MtrunA17_Chr3g0129041 47.024 336 159 7 1 331 1 322 4.53e-89 270
Msa0755470 MtrunA17_Chr2g0292211 44.411 331 180 2 1 331 15 341 5.15e-89 271
Msa0755470 MtrunA17_Chr4g0038161 46.926 309 149 3 26 331 24 320 6.86e-89 269
Msa0755470 MtrunA17_Chr4g0038171 47.712 306 152 2 26 331 24 321 9.80e-89 268
Msa0755470 MtrunA17_Chr5g0432441 48.710 310 142 5 26 331 30 326 2.00e-88 268
Msa0755470 MtrunA17_Chr2g0292241 47.020 302 156 2 30 331 33 330 5.37e-88 268
Msa0755470 MtrunA17_Chr2g0292271 46.358 302 158 2 30 331 33 330 2.54e-87 266
Msa0755470 MtrunA17_Chr2g0292251 46.580 307 158 4 26 331 28 329 3.32e-87 266
Msa0755470 MtrunA17_Chr2g0320031 43.505 331 175 4 1 331 1 319 5.63e-87 264
Msa0755470 MtrunA17_Chr3g0106901 47.095 327 153 4 6 331 16 323 1.03e-86 263
Msa0755470 MtrunA17_Chr2g0292151 45.338 311 156 3 26 331 29 330 1.04e-85 262
Msa0755470 MtrunA17_Chr5g0432351 47.249 309 148 6 26 331 25 321 1.59e-85 260
Msa0755470 MtrunA17_Chr2g0292291 46.053 304 159 3 29 331 33 332 1.60e-85 261
Msa0755470 MtrunA17_Chr7g0224371 45.538 325 162 5 7 331 13 322 3.39e-85 259
Msa0755470 MtrunA17_Chr5g0402571 45.603 307 159 4 26 331 27 326 8.86e-85 259
Msa0755470 MtrunA17_Chr5g0432331 47.097 310 147 7 26 331 56 352 3.34e-84 258
Msa0755470 MtrunA17_Chr2g0291751 43.413 334 182 3 1 331 1 330 6.81e-84 257
Msa0755470 MtrunA17_Chr5g0432341 46.926 309 149 6 26 331 25 321 1.37e-83 255
Msa0755470 MtrunA17_Chr2g0292111 45.277 307 154 4 30 331 33 330 1.97e-83 256
Msa0755470 MtrunA17_Chr5g0402581 45.928 307 158 4 26 331 27 326 4.69e-83 254
Msa0755470 MtrunA17_Chr6g0477071 40.964 332 171 7 4 331 32 342 1.02e-82 254
Msa0755470 MtrunA17_Chr4g0013721 44.040 302 160 4 30 331 104 396 7.22e-81 251
Msa0755470 MtrunA17_Chr1g0194151 42.943 333 178 5 4 331 8 333 9.56e-81 248
Msa0755470 MtrunA17_Chr3g0107881 43.252 326 171 5 9 331 10 324 1.80e-80 248
Msa0755470 MtrunA17_Chr1g0194271 42.183 339 179 4 4 331 8 340 2.28e-80 248
Msa0755470 MtrunA17_Chr4g0013821 43.092 304 160 5 30 331 32 324 4.00e-78 242
Msa0755470 MtrunA17_Chr5g0405991 41.390 331 179 7 1 331 1 316 4.40e-77 239
Msa0755470 MtrunA17_Chr1g0204011 41.867 332 176 9 3 331 5 322 7.15e-77 238
Msa0755470 MtrunA17_Chr4g0024121 41.411 326 180 5 6 331 12 326 1.49e-76 238
Msa0755470 MtrunA17_Chr1g0188431 40.483 331 180 6 1 331 14 327 8.06e-76 236
Msa0755470 MtrunA17_Chr3g0128061 41.493 335 183 6 1 331 1 326 2.68e-75 234
Msa0755470 MtrunA17_Chr8g0371381 42.671 307 162 7 26 331 26 319 2.61e-74 231
Msa0755470 MtrunA17_Chr2g0322861 42.574 303 166 5 30 331 91 386 6.08e-74 233
Msa0755470 MtrunA17_Chr4g0076211 45.215 303 151 7 30 331 45 333 1.28e-73 230
Msa0755470 MtrunA17_Chr7g0268501 42.157 306 167 4 26 331 25 320 1.12e-72 228
Msa0755470 MtrunA17_Chr7g0268521 42.157 306 167 4 26 331 25 320 1.12e-72 228
Msa0755470 MtrunA17_Chr4g0063671 43.396 318 164 7 19 331 14 320 3.15e-71 224
Msa0755470 MtrunA17_Chr7g0254231 40.066 302 165 5 30 331 26 311 5.24e-71 223
Msa0755470 MtrunA17_Chr2g0296621 44.156 308 156 9 25 331 49 341 9.56e-70 221
Msa0755470 MtrunA17_Chr4g0075241 37.273 330 198 6 3 331 6 327 1.93e-69 219
Msa0755470 MtrunA17_Chr6g0460711 41.722 302 164 6 30 331 25 314 2.04e-69 219
Msa0755470 MtrunA17_Chr1g0164891 42.484 306 166 6 30 331 93 392 4.01e-69 221
Msa0755470 MtrunA17_Chr7g0254201 40.066 302 168 5 30 331 24 312 1.93e-68 216
Msa0755470 MtrunA17_Chr2g0279041 39.939 328 184 6 7 331 8 325 3.07e-68 216
Msa0755470 MtrunA17_Chr1g0157051 40.000 325 180 9 7 330 7 317 4.02e-68 216
Msa0755470 MtrunA17_Chr2g0329641 39.286 336 182 7 7 331 11 335 9.25e-68 215
Msa0755470 MtrunA17_Chr7g0225221 37.651 332 194 5 1 331 1 320 1.75e-67 214
Msa0755470 MtrunA17_Chr5g0432401 37.798 336 147 7 2 330 5 285 1.35e-65 208
Msa0755470 MtrunA17_Chr1g0197411 37.195 328 196 6 3 327 6 326 1.74e-65 209
Msa0755470 MtrunA17_Chr4g0046131 40.446 314 176 6 19 327 35 342 2.42e-65 209
Msa0755470 MtrunA17_Chr3g0136751 38.973 331 193 5 1 331 1 322 2.88e-64 206
Msa0755470 MtrunA17_Chr8g0364291 38.217 314 174 5 26 331 23 324 3.50e-64 206
Msa0755470 MtrunA17_Chr1g0181431 37.821 312 178 5 23 331 25 323 5.53e-64 205
Msa0755470 MtrunA17_Chr6g0467251 37.037 324 184 7 6 327 19 324 5.77e-64 206
Msa0755470 MtrunA17_Chr6g0451571 38.065 310 179 6 26 331 34 334 1.78e-63 204
Msa0755470 MtrunA17_Chr6g0467161 37.540 309 173 6 26 331 45 336 2.21e-63 204
Msa0755470 MtrunA17_Chr1g0181511 36.422 313 184 4 22 331 23 323 2.46e-62 201
Msa0755470 MtrunA17_Chr1g0181481 36.422 313 184 5 22 331 23 323 2.30e-61 199
Msa0755470 MtrunA17_Chr6g0467121 37.013 308 174 6 26 331 74 363 3.61e-61 200
Msa0755470 MtrunA17_Chr1g0148021 37.805 328 188 8 8 331 13 328 5.96e-61 197
Msa0755470 MtrunA17_Chr5g0401431 35.928 334 204 5 1 330 1 328 1.38e-60 197
Msa0755470 MtrunA17_Chr4g0072091 39.016 305 174 6 26 327 24 319 3.74e-60 195
Msa0755470 MtrunA17_Chr2g0316791 36.176 340 178 8 20 327 70 402 3.16e-58 193
Msa0755470 MtrunA17_Chr2g0316831 35.294 340 181 8 20 327 106 438 2.27e-57 191
Msa0755470 MtrunA17_Chr2g0316481 35.294 340 181 7 20 327 70 402 2.89e-57 190
Msa0755470 MtrunA17_Chr2g0316191 34.604 341 183 7 20 327 70 403 4.54e-56 187
Msa0755470 MtrunA17_Chr2g0278671 38.924 316 180 8 20 331 17 323 1.92e-55 183
Msa0755470 MtrunA17_Chr5g0413051 39.172 314 174 10 26 331 73 377 4.24e-55 184
Msa0755470 MtrunA17_Chr4g0053871 37.582 306 175 7 26 327 27 320 5.52e-55 182
Msa0755470 MtrunA17_Chr4g0074851 35.806 310 182 6 26 331 32 328 1.10e-53 179
Msa0755470 MtrunA17_Chr2g0311251 33.528 343 188 8 20 330 5 339 2.05e-52 176
Msa0755470 MtrunA17_Chr3g0114461 46.341 205 97 4 127 331 1 192 4.44e-52 170
Msa0755470 MtrunA17_Chr2g0311241 31.593 383 179 10 19 327 53 426 2.07e-51 176
Msa0755470 MtrunA17_Chr2g0279061 40.226 266 144 7 70 331 12 266 1.22e-50 169
Msa0755470 MtrunA17_Chr2g0292281 44.131 213 105 4 119 331 18 216 9.31e-46 155
Msa0755470 MtrunA17_Chr2g0316811 38.494 239 134 5 20 256 44 271 1.68e-37 136
Msa0755470 MtrunA17_Chr3g0114491 52.800 125 59 0 9 133 1 125 1.34e-36 128
Msa0755470 MtrunA17_Chr4g0004591 30.183 328 159 5 25 330 76 355 1.79e-36 134
Msa0755470 MtrunA17_Chr2g0316141 34.420 276 162 10 70 331 9 279 2.70e-36 132
Msa0755470 MtrunA17_Chr2g0316181 34.420 276 162 10 70 331 9 279 2.70e-36 132
Msa0755470 MtrunA17_Chr3g0104101 38.608 158 64 5 190 331 9 149 2.62e-25 99.4
Msa0755470 MtrunA17_Chr1g0181491 43.925 107 58 2 29 135 15 119 5.41e-23 93.2
Msa0755470 MtrunA17_Chr1g0181501 30.808 198 122 4 137 331 4 189 6.65e-23 94.4
Msa0755470 MtrunA17_Chr5g0432321 40.945 127 64 3 147 273 17 132 4.41e-22 90.1
Msa0755470 MtrunA17_Chr6g0468731 61.972 71 23 2 65 135 22 88 1.45e-20 84.7
Msa0755470 MtrunA17_Chr7g0254181 38.400 125 72 3 69 192 2 122 2.43e-18 80.9
Msa0755470 MtrunA17_Chr7g0254171 35.766 137 81 3 72 205 4 136 2.59e-18 80.1
Msa0755470 MtrunA17_Chr1g0196191 58.209 67 27 1 68 134 27 92 2.17e-17 78.2
Msa0755470 MtrunA17_Chr4g0013811 47.222 72 38 0 137 208 6 77 1.68e-16 73.6
Msa0755470 MtrunA17_Chr7g0268491 39.080 87 49 1 245 331 15 97 4.09e-13 64.7
Msa0755470 MtrunA17_Chr5g0432361 39.785 93 48 3 241 330 21 108 4.86e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0755470 AT2G35380.1 64.615 325 114 1 7 331 12 335 4.40e-155 438
Msa0755470 AT2G35380.2 66.397 247 83 0 85 331 1 247 8.93e-121 348
Msa0755470 AT5G66390.1 53.268 306 138 2 26 331 33 333 1.39e-110 325
Msa0755470 AT3G50990.1 52.614 306 140 3 26 331 41 341 7.52e-110 323
Msa0755470 AT2G18150.1 51.634 306 143 2 26 331 36 336 1.79e-106 315
Msa0755470 AT1G44970.1 52.941 306 140 3 26 331 45 346 4.40e-105 311
Msa0755470 AT4G36430.1 51.634 306 143 2 26 331 30 330 3.75e-104 308
Msa0755470 AT4G16270.1 50.809 309 141 5 26 331 48 348 7.86e-101 301
Msa0755470 AT2G18140.1 49.346 306 150 2 26 331 35 335 8.09e-100 298
Msa0755470 AT5G06720.1 46.319 326 170 3 6 331 13 333 1.13e-98 295
Msa0755470 AT1G68850.1 43.988 341 171 6 4 331 2 335 1.24e-93 282
Msa0755470 AT5G06730.1 43.558 326 179 3 6 331 14 334 2.08e-93 282
Msa0755470 AT5G58390.1 48.328 329 150 6 6 331 5 316 1.72e-92 278
Msa0755470 AT5G19890.1 46.769 325 162 6 9 331 12 327 7.09e-92 277
Msa0755470 AT3G32980.1 45.570 316 168 2 17 331 22 334 1.08e-91 278
Msa0755470 AT5G58400.1 47.416 329 153 7 6 331 14 325 4.55e-91 275
Msa0755470 AT2G38390.1 46.753 308 159 3 26 332 31 334 1.40e-89 272
Msa0755470 AT3G49120.1 43.987 316 173 2 17 331 23 335 2.60e-88 269
Msa0755470 AT5G05340.1 46.104 308 151 5 26 331 30 324 5.07e-88 267
Msa0755470 AT1G49570.1 46.885 305 157 3 26 329 48 348 9.39e-88 267
Msa0755470 AT3G49110.1 45.277 307 164 2 26 331 33 336 2.20e-87 266
Msa0755470 AT1G14550.1 42.598 331 172 6 4 331 6 321 3.22e-86 263
Msa0755470 AT2G38380.1 46.557 305 158 3 29 332 34 334 4.14e-86 263
Msa0755470 AT4G08780.1 44.951 307 165 2 26 331 24 327 1.02e-85 262
Msa0755470 AT2G22420.1 43.293 328 171 5 4 331 7 319 3.61e-85 260
Msa0755470 AT4G08770.1 45.603 307 163 2 26 331 24 327 1.11e-84 259
Msa0755470 AT1G14540.1 44.040 302 158 3 30 331 25 315 3.55e-84 257
Msa0755470 AT5G19880.1 44.277 332 172 5 3 331 8 329 2.50e-79 245
Msa0755470 AT3G03670.1 45.307 309 156 6 26 331 23 321 1.76e-78 243
Msa0755470 AT5G51890.1 42.249 329 172 10 8 331 7 322 1.38e-75 235
Msa0755470 AT2G41480.1 43.333 330 170 8 7 331 11 328 2.12e-74 233
Msa0755470 AT1G05260.1 42.345 307 169 5 26 331 26 325 4.04e-74 232
Msa0755470 AT5G64120.1 44.040 302 157 5 30 331 39 328 2.90e-73 229
Msa0755470 AT5G17820.1 42.384 302 158 6 30 331 28 313 9.99e-73 228
Msa0755470 AT3G21770.1 40.705 312 178 5 17 327 19 324 1.79e-72 228
Msa0755470 AT4G33420.1 40.244 328 176 7 4 331 18 325 4.85e-72 226
Msa0755470 AT4G33420.2 40.244 328 176 7 4 331 65 372 1.87e-71 226
Msa0755470 AT1G05240.1 42.122 311 168 6 24 331 24 325 2.11e-71 225
Msa0755470 AT1G05250.1 42.122 311 168 6 24 331 24 325 2.11e-71 225
Msa0755470 AT5G17820.2 42.384 302 158 6 30 331 81 366 3.46e-71 226
Msa0755470 AT5G15180.1 42.244 303 165 6 30 331 36 329 4.93e-71 224
Msa0755470 AT1G71695.1 40.984 305 164 6 26 327 44 335 7.92e-71 224
Msa0755470 AT4G11290.1 39.039 333 194 6 1 331 1 326 1.50e-70 223
Msa0755470 AT5G42180.1 41.463 328 174 7 4 330 6 316 5.71e-69 218
Msa0755470 AT2G39040.1 42.857 315 161 8 26 331 46 350 1.60e-68 218
Msa0755470 AT4G26010.1 41.914 303 156 6 30 331 26 309 2.53e-68 216
Msa0755470 AT5G47000.1 38.554 332 188 6 3 331 12 330 4.02e-68 216
Msa0755470 AT4G31760.1 40.000 325 185 5 7 331 12 326 4.50e-68 216
Msa0755470 AT5G39580.1 41.867 332 179 8 1 331 1 319 4.80e-68 216
Msa0755470 AT4G26010.2 41.914 303 156 6 30 331 54 337 5.41e-68 216
Msa0755470 AT5G64110.1 41.441 333 184 5 1 331 7 330 1.11e-67 215
Msa0755470 AT3G28200.1 38.312 308 176 4 26 331 21 316 9.92e-67 213
Msa0755470 AT3G01190.1 40.367 327 177 8 6 331 12 321 2.84e-66 211
Msa0755470 AT5G40150.1 39.286 308 174 5 26 331 32 328 1.24e-65 210
Msa0755470 AT1G24110.1 40.328 305 171 6 26 327 22 318 3.11e-65 209
Msa0755470 AT4G17690.1 40.323 310 168 6 26 331 26 322 3.14e-65 209
Msa0755470 AT1G34510.1 41.042 307 161 6 26 331 22 309 3.78e-65 208
Msa0755470 AT4G37530.1 40.064 312 178 4 23 331 24 329 5.56e-65 208
Msa0755470 AT4G37520.1 39.806 309 177 4 26 331 27 329 1.05e-64 207
Msa0755470 AT2G34060.1 41.424 309 168 7 26 328 42 343 1.82e-63 205
Msa0755470 AT2G18980.1 40.968 310 168 6 26 331 25 323 3.21e-63 204
Msa0755470 AT2G24800.1 40.645 310 169 6 26 331 31 329 5.92e-63 203
Msa0755470 AT4G25980.1 39.339 333 183 8 4 331 8 326 6.44e-62 200
Msa0755470 AT1G77100.1 39.940 333 178 8 6 331 2 319 7.30e-62 200
Msa0755470 AT4G37520.2 39.159 309 176 5 26 331 27 326 1.25e-61 199
Msa0755470 AT4G33870.1 35.988 339 171 6 26 327 68 397 4.01e-61 201
Msa0755470 AT2G43480.1 39.936 313 169 8 26 331 35 335 1.33e-60 197
Msa0755470 AT2G37130.2 37.338 308 175 6 29 331 2 296 3.28e-60 195
Msa0755470 AT2G37130.1 37.143 315 180 6 22 331 26 327 4.96e-60 196
Msa0755470 AT4G30170.1 38.854 314 175 8 23 331 24 325 1.23e-59 194
Msa0755470 AT5G14130.1 34.513 339 186 6 4 331 17 330 2.75e-59 194
Msa0755470 AT5G64100.1 41.447 304 163 6 30 331 41 331 3.94e-59 193
Msa0755470 AT5G24070.1 37.700 313 176 7 26 331 35 335 9.57e-59 192
Msa0755470 AT5G14130.2 34.513 339 186 6 4 331 58 371 1.07e-58 193
Msa0755470 AT3G49960.1 37.386 329 191 7 7 331 12 329 2.44e-58 191
Msa0755470 AT4G21960.1 37.742 310 176 5 26 331 31 327 2.11e-57 189
Msa0755470 AT5G67400.1 36.036 333 201 5 5 331 3 329 5.44e-57 187
Msa0755470 AT1G30870.1 39.355 310 171 8 25 331 50 345 1.36e-56 187
Msa0755470 AT3G17070.1 36.508 315 182 9 24 331 36 339 3.63e-55 183
Msa0755470 AT4G37530.2 40.000 260 148 5 23 278 24 279 1.61e-51 172
Msa0755470 AT5G22410.1 33.832 334 199 10 1 328 5 322 7.48e-50 169
Msa0755470 AT5G39580.2 43.636 220 115 6 1 217 1 214 6.92e-44 151
Msa0755470 AT4G25980.2 44.737 190 97 5 4 193 53 234 3.30e-41 145
Msa0755470 AT3G17070.2 34.035 285 169 10 54 331 4 276 3.69e-40 142
Msa0755470 AT2G24800.2 45.509 167 87 2 26 192 31 193 1.91e-37 134
Msa0755470 AT3G42570.1 34.459 148 82 4 46 191 13 147 2.54e-15 72.8
Msa0755470 AT4G32320.1 26.667 270 122 7 57 312 114 321 1.81e-12 67.8

Find 79 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGCCTCTAAAGATGAATT+TGG 0.209973 5_2:-9259417 None:intergenic
TGTCAAATATTCACACTCTA+AGG 0.214649 5_2:+9258527 Msa0755470:CDS
GGAAATATTAATGTTCTTAC+TGG 0.240350 5_2:+9260219 Msa0755470:CDS
TGCTCCAAATTCATCTTTAG+AGG 0.250110 5_2:+9259413 Msa0755470:CDS
AAGGATTAGGAGGCAGGTTT+GGG 0.252670 5_2:+9260137 Msa0755470:CDS
TTGTCATCCCTTCCGGTAAT+AGG 0.256822 5_2:-9259994 None:intergenic
GAAGGATTAGGAGGCAGGTT+TGG 0.274461 5_2:+9260136 Msa0755470:CDS
CCACGTAAAGAGTTCAAATT+TGG 0.287872 5_2:-9258918 None:intergenic
GTGCGATGCATCGGTACTTT+TGG 0.290206 5_2:+9258857 Msa0755470:CDS
ATTGAAGGAAAAGGCTTGTT+AGG 0.300624 5_2:+9260078 Msa0755470:CDS
AATTAATAATTTCAAGCAAC+AGG 0.312201 5_2:+9259440 Msa0755470:CDS
ACCAAGATGGGATGTGTGGC+TGG 0.353196 5_2:+9259338 Msa0755470:CDS
GGGCAAAATGTTTAAGCTTC+CGG 0.353567 5_2:+9259878 Msa0755470:CDS
TGCAAATTTGTCATCCCTTC+CGG 0.355868 5_2:-9260001 None:intergenic
AATTTGGAGCAGGGATGAAT+AGG 0.364651 5_2:-9259401 None:intergenic
TATTGATTATCAAACCGTTT+TGG 0.372482 5_2:-9260042 None:intergenic
TTGTAGATTTGTCAACCCTT+AGG 0.373734 5_2:+9260266 Msa0755470:CDS
TAATTTCAAGCAACAGGGTC+TGG 0.383105 5_2:+9259446 Msa0755470:CDS
GAAGACCTGGTGGTTCTATC+AGG 0.386990 5_2:+9259474 Msa0755470:CDS
ATAAACATTATTGAAGGAAA+AGG 0.389138 5_2:+9260069 Msa0755470:CDS
TGCTAAGTCTATGATTAAGA+TGG 0.404255 5_2:+9260197 Msa0755470:CDS
AAGACTTTGATGGAAGGATT+AGG 0.406088 5_2:+9260124 Msa0755470:CDS
CCTTCCGGTAATAGGACATA+TGG 0.429530 5_2:-9259986 None:intergenic
TTGATCAGTCAAGACTTTGA+TGG 0.433237 5_2:+9260114 Msa0755470:CDS
CGGTCCATATGTCCTATTAC+CGG 0.433238 5_2:+9259982 Msa0755470:CDS
TGCTCGTGATGCTGTTGAAT+TGG 0.436779 5_2:+9259025 Msa0755470:CDS
TGTAGATTTGTCAACCCTTA+GGG 0.445313 5_2:+9260267 Msa0755470:CDS
CCCAGCCACACATCCCATCT+TGG 0.449198 5_2:-9259339 None:intergenic
TGATGGAAGGATTAGGAGGC+AGG 0.457704 5_2:+9260131 Msa0755470:CDS
TACTTCATAAACATTATTGA+AGG 0.460027 5_2:+9260063 Msa0755470:CDS
GTCAAATATTCACACTCTAA+GGG 0.462872 5_2:+9258528 Msa0755470:CDS
GATAAAATATTTACTTGAAG+AGG 0.463463 5_2:+9258959 Msa0755470:CDS
GGATGTGTGGCTGGGGAGGA+AGG 0.466895 5_2:+9259347 Msa0755470:CDS
AAAACAGGTAGCCATACAAT+AGG 0.468505 5_2:+9259853 Msa0755470:intron
GCTAAGTCTATGATTAAGAT+GGG 0.481139 5_2:+9260198 Msa0755470:CDS
CAAGATGGGATGTGTGGCTG+GGG 0.483675 5_2:+9259340 Msa0755470:CDS
AATGTTTAAGCTTCCGGCAG+AGG 0.489691 5_2:+9259884 Msa0755470:CDS
CCAAGATGGGATGTGTGGCT+GGG 0.493544 5_2:+9259339 Msa0755470:CDS
TCTAAAGATGAATTTGGAGC+AGG 0.507269 5_2:-9259411 None:intergenic
TTACCATAACAAAACAATCA+TGG 0.512399 5_2:-9258681 None:intergenic
TGAAGAGAGGAGGACCAAGA+TGG 0.516172 5_2:+9259325 Msa0755470:intron
GAAGTGAAGGTGAAATAAGA+AGG 0.517168 5_2:+9260241 Msa0755470:CDS
TCTCACTATCCCTTCAGCTA+AGG 0.524756 5_2:-9258593 None:intergenic
ATGTGCTGATATTCTTGCAA+TGG 0.525272 5_2:+9259001 Msa0755470:CDS
CTCACTATCCCTTCAGCTAA+GGG 0.526913 5_2:-9258592 None:intergenic
CCAAATTTGAACTCTTTACG+TGG 0.530593 5_2:+9258918 Msa0755470:CDS
CTCCACTGAAACTTGACTCA+AGG 0.531127 5_2:-9259374 None:intergenic
GATGGGATGTGTGGCTGGGG+AGG 0.531399 5_2:+9259343 Msa0755470:CDS
ATGACAAGTGAGAAAGAAGC+TGG 0.532451 5_2:+9258894 Msa0755470:CDS
TCTTGTTCATGATTACTACA+AGG 0.533843 5_2:+9258561 Msa0755470:CDS
GAAGAGAGGAGGACCAAGAT+GGG 0.542771 5_2:+9259326 Msa0755470:intron
TGGAGCAGGGATGAATAGGT+TGG 0.552780 5_2:-9259397 None:intergenic
TCCCTTGAGTCAAGTTTCAG+TGG 0.555521 5_2:+9259372 Msa0755470:CDS
ATATAAGGGGTGCGATGCAT+CGG 0.563534 5_2:+9258848 Msa0755470:intron
CAGGTAGCCATACAATAGGA+AGG 0.566465 5_2:+9259857 Msa0755470:intron
AATGTTCTTACTGGAAGTGA+AGG 0.567607 5_2:+9260228 Msa0755470:CDS
TCCACTGAAACTTGACTCAA+GGG 0.577180 5_2:-9259373 None:intergenic
GGGTCTGGATATTGAAGACC+TGG 0.580083 5_2:+9259461 Msa0755470:CDS
AGTAGCGACGCTGCTATACG+TGG 0.583453 5_2:-9258646 None:intergenic
ATTAATAATTTCAAGCAACA+GGG 0.589514 5_2:+9259441 Msa0755470:CDS
TCAGTCAAGACTTTGATGGA+AGG 0.590453 5_2:+9260118 Msa0755470:CDS
TCAAATATTCACACTCTAAG+GGG 0.598238 5_2:+9258529 Msa0755470:CDS
TTGTTTCATAGATCCTCTGC+CGG 0.599925 5_2:-9259897 None:intergenic
AGGATTAGGAGGCAGGTTTG+GGG 0.605235 5_2:+9260138 Msa0755470:CDS
ACTTTGATGGAAGGATTAGG+AGG 0.606364 5_2:+9260127 Msa0755470:CDS
CCATATGTCCTATTACCGGA+AGG 0.607440 5_2:+9259986 Msa0755470:CDS
CTAAAGATGAATTTGGAGCA+GGG 0.616673 5_2:-9259410 None:intergenic
TTTGGTGTTTGAAAATCAAG+GGG 0.635113 5_2:-9260024 None:intergenic
GGACCGTAGGACTCTTCTGA+AGG 0.636543 5_2:-9259965 None:intergenic
AGGTAGCCATACAATAGGAA+GGG 0.640344 5_2:+9259858 Msa0755470:intron
CATATGTCCTATTACCGGAA+GGG 0.646460 5_2:+9259987 Msa0755470:CDS
AAGATCAGTAATAGTCTCAG+AGG 0.648692 5_2:-9258493 None:intergenic
TAATAGGACATATGGACCGT+AGG 0.650725 5_2:-9259978 None:intergenic
CAACCTTCAGAAGAGTCCTA+CGG 0.678058 5_2:+9259962 Msa0755470:CDS
GAGGACCAAGATGGGATGTG+TGG 0.689019 5_2:+9259334 Msa0755470:CDS
TCTGGATATTGAAGACCTGG+TGG 0.695296 5_2:+9259464 Msa0755470:CDS
TCAGCACATGAAACAGTGAG+AGG 0.713764 5_2:-9258987 None:intergenic
ATATACCTGATAGAACCACC+AGG 0.735429 5_2:-9259479 None:intergenic
GATAGTGAGACATAACGTAG+CGG 0.771195 5_2:+9258606 Msa0755470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACATTGTTTATTTCA+TGG - chr5_2:9259288-9259307 None:intergenic 15.0%
!!! TGACAGTTTTAAATAAAATT+TGG - chr5_2:9259698-9259717 None:intergenic 15.0%
!! TTCTTACTAATTAATTAGAA+GGG + chr5_2:9259826-9259845 Msa0755470:intron 15.0%
!! AAAAAACATTGTTTATTTCA+TGG - chr5_2:9259288-9259307 None:intergenic 15.0%
!!! TGACAGTTTTAAATAAAATT+TGG - chr5_2:9259698-9259717 None:intergenic 15.0%
!! TTCTTACTAATTAATTAGAA+GGG + chr5_2:9259826-9259845 Msa0755470:intron 15.0%
!! GTTGTTGAAAATGAATATAA+GGG + chr5_2:9258834-9258853 Msa0755470:intron 20.0%
!! TTGTTGAAAATGAATATAAG+GGG + chr5_2:9258835-9258854 Msa0755470:intron 20.0%
!! GATAAAATATTTACTTGAAG+AGG + chr5_2:9258959-9258978 Msa0755470:CDS 20.0%
!! ATATTACTACATTGTTCATA+GGG + chr5_2:9259259-9259278 Msa0755470:intron 20.0%
!! AATTAATAATTTCAAGCAAC+AGG + chr5_2:9259440-9259459 Msa0755470:CDS 20.0%
!! ATTAATAATTTCAAGCAACA+GGG + chr5_2:9259441-9259460 Msa0755470:CDS 20.0%
!!! TACAATTTTTTGGACTAAAT+TGG - chr5_2:9259537-9259556 None:intergenic 20.0%
!! AATTTAGTCCAAAAAATTGT+AGG + chr5_2:9259536-9259555 Msa0755470:intron 20.0%
!! ATTTAGTCCAAAAAATTGTA+GGG + chr5_2:9259537-9259556 Msa0755470:intron 20.0%
!! TGTATTGAATCAAGATAATT+TGG - chr5_2:9259628-9259647 None:intergenic 20.0%
!! GTTCTTACTAATTAATTAGA+AGG + chr5_2:9259825-9259844 Msa0755470:intron 20.0%
!! TCTTACTAATTAATTAGAAG+GGG + chr5_2:9259827-9259846 Msa0755470:intron 20.0%
!! TACTTCATAAACATTATTGA+AGG + chr5_2:9260063-9260082 Msa0755470:CDS 20.0%
!! ATAAACATTATTGAAGGAAA+AGG + chr5_2:9260069-9260088 Msa0755470:CDS 20.0%
!!! AAAGAAAAGTTTTTCATTAG+AGG - chr5_2:9260169-9260188 None:intergenic 20.0%
!! GTTGTTGAAAATGAATATAA+GGG + chr5_2:9258834-9258853 Msa0755470:intron 20.0%
!! TTGTTGAAAATGAATATAAG+GGG + chr5_2:9258835-9258854 Msa0755470:intron 20.0%
!! GATAAAATATTTACTTGAAG+AGG + chr5_2:9258959-9258978 Msa0755470:CDS 20.0%
!! ATATTACTACATTGTTCATA+GGG + chr5_2:9259259-9259278 Msa0755470:intron 20.0%
!! AATTAATAATTTCAAGCAAC+AGG + chr5_2:9259440-9259459 Msa0755470:CDS 20.0%
!! ATTAATAATTTCAAGCAACA+GGG + chr5_2:9259441-9259460 Msa0755470:CDS 20.0%
!!! TACAATTTTTTGGACTAAAT+TGG - chr5_2:9259537-9259556 None:intergenic 20.0%
!! AATTTAGTCCAAAAAATTGT+AGG + chr5_2:9259536-9259555 Msa0755470:intron 20.0%
!! ATTTAGTCCAAAAAATTGTA+GGG + chr5_2:9259537-9259556 Msa0755470:intron 20.0%
!! TGTATTGAATCAAGATAATT+TGG - chr5_2:9259628-9259647 None:intergenic 20.0%
!! GTTCTTACTAATTAATTAGA+AGG + chr5_2:9259825-9259844 Msa0755470:intron 20.0%
!! TCTTACTAATTAATTAGAAG+GGG + chr5_2:9259827-9259846 Msa0755470:intron 20.0%
!! TACTTCATAAACATTATTGA+AGG + chr5_2:9260063-9260082 Msa0755470:CDS 20.0%
!! ATAAACATTATTGAAGGAAA+AGG + chr5_2:9260069-9260088 Msa0755470:CDS 20.0%
!!! AAAGAAAAGTTTTTCATTAG+AGG - chr5_2:9260169-9260188 None:intergenic 20.0%
! TTACCATAACAAAACAATCA+TGG - chr5_2:9258684-9258703 None:intergenic 25.0%
!! AATCTTGAAGTACTTATACA+TGG - chr5_2:9258711-9258730 None:intergenic 25.0%
! GGTTGTTGAAAATGAATATA+AGG + chr5_2:9258833-9258852 Msa0755470:intron 25.0%
! GAGTTCGGTTATTAAAAAAT+TGG - chr5_2:9259103-9259122 None:intergenic 25.0%
! GATATTACTACATTGTTCAT+AGG + chr5_2:9259258-9259277 Msa0755470:intron 25.0%
!! TGTTTTACCCTACAATTTTT+TGG - chr5_2:9259547-9259566 None:intergenic 25.0%
! CTTACTAATTAATTAGAAGG+GGG + chr5_2:9259828-9259847 Msa0755470:intron 25.0%
!!! TTTTGGTGTTTGAAAATCAA+GGG - chr5_2:9260028-9260047 None:intergenic 25.0%
!! TTGATTTTCAAACACCAAAA+CGG + chr5_2:9260028-9260047 Msa0755470:CDS 25.0%
!!! TATTGATTATCAAACCGTTT+TGG - chr5_2:9260045-9260064 None:intergenic 25.0%
! GGAAATATTAATGTTCTTAC+TGG + chr5_2:9260219-9260238 Msa0755470:CDS 25.0%
! TTACCATAACAAAACAATCA+TGG - chr5_2:9258684-9258703 None:intergenic 25.0%
!! AATCTTGAAGTACTTATACA+TGG - chr5_2:9258711-9258730 None:intergenic 25.0%
! GGTTGTTGAAAATGAATATA+AGG + chr5_2:9258833-9258852 Msa0755470:intron 25.0%
! GAGTTCGGTTATTAAAAAAT+TGG - chr5_2:9259103-9259122 None:intergenic 25.0%
! GATATTACTACATTGTTCAT+AGG + chr5_2:9259258-9259277 Msa0755470:intron 25.0%
!! TGTTTTACCCTACAATTTTT+TGG - chr5_2:9259547-9259566 None:intergenic 25.0%
! CTTACTAATTAATTAGAAGG+GGG + chr5_2:9259828-9259847 Msa0755470:intron 25.0%
!!! TTTTGGTGTTTGAAAATCAA+GGG - chr5_2:9260028-9260047 None:intergenic 25.0%
!! TTGATTTTCAAACACCAAAA+CGG + chr5_2:9260028-9260047 Msa0755470:CDS 25.0%
!!! TATTGATTATCAAACCGTTT+TGG - chr5_2:9260045-9260064 None:intergenic 25.0%
! GGAAATATTAATGTTCTTAC+TGG + chr5_2:9260219-9260238 Msa0755470:CDS 25.0%
TGTCAAATATTCACACTCTA+AGG + chr5_2:9258527-9258546 Msa0755470:CDS 30.0%
GTCAAATATTCACACTCTAA+GGG + chr5_2:9258528-9258547 Msa0755470:CDS 30.0%
TCAAATATTCACACTCTAAG+GGG + chr5_2:9258529-9258548 Msa0755470:CDS 30.0%
TCTTGTTCATGATTACTACA+AGG + chr5_2:9258561-9258580 Msa0755470:CDS 30.0%
!! CTTCCATGATTGTTTTGTTA+TGG + chr5_2:9258678-9258697 Msa0755470:CDS 30.0%
AATAATTGAAAACACCGTGT+AGG - chr5_2:9258776-9258795 None:intergenic 30.0%
! TTTTTGTCTGTCATACATTG+TGG + chr5_2:9258812-9258831 Msa0755470:intron 30.0%
AAGAAAAAGAGTAGAGAGAA+AGG - chr5_2:9259063-9259082 None:intergenic 30.0%
! TTCTCTCTACTCTTTTTCTT+TGG + chr5_2:9259063-9259082 Msa0755470:intron 30.0%
ATTGATTGAACTGTTCAGTT+CGG + chr5_2:9259197-9259216 Msa0755470:intron 30.0%
CTGCTATTAACTAGTTCAAT+TGG + chr5_2:9259236-9259255 Msa0755470:intron 30.0%
!!! CTATTGTTTGTTTTGAAGAG+AGG + chr5_2:9259312-9259331 Msa0755470:intron 30.0%
! AAAGCCTCTAAAGATGAATT+TGG - chr5_2:9259420-9259439 None:intergenic 30.0%
!! TTTGGTGTTTGAAAATCAAG+GGG - chr5_2:9260027-9260046 None:intergenic 30.0%
!!! GTTTTGGTGTTTGAAAATCA+AGG - chr5_2:9260029-9260048 None:intergenic 30.0%
TGCTAAGTCTATGATTAAGA+TGG + chr5_2:9260197-9260216 Msa0755470:CDS 30.0%
GCTAAGTCTATGATTAAGAT+GGG + chr5_2:9260198-9260217 Msa0755470:CDS 30.0%
TGTCAAATATTCACACTCTA+AGG + chr5_2:9258527-9258546 Msa0755470:CDS 30.0%
GTCAAATATTCACACTCTAA+GGG + chr5_2:9258528-9258547 Msa0755470:CDS 30.0%
TCAAATATTCACACTCTAAG+GGG + chr5_2:9258529-9258548 Msa0755470:CDS 30.0%
TCTTGTTCATGATTACTACA+AGG + chr5_2:9258561-9258580 Msa0755470:CDS 30.0%
!! CTTCCATGATTGTTTTGTTA+TGG + chr5_2:9258678-9258697 Msa0755470:CDS 30.0%
AATAATTGAAAACACCGTGT+AGG - chr5_2:9258776-9258795 None:intergenic 30.0%
! TTTTTGTCTGTCATACATTG+TGG + chr5_2:9258812-9258831 Msa0755470:intron 30.0%
AAGAAAAAGAGTAGAGAGAA+AGG - chr5_2:9259063-9259082 None:intergenic 30.0%
! TTCTCTCTACTCTTTTTCTT+TGG + chr5_2:9259063-9259082 Msa0755470:intron 30.0%
ATTGATTGAACTGTTCAGTT+CGG + chr5_2:9259197-9259216 Msa0755470:intron 30.0%
CTGCTATTAACTAGTTCAAT+TGG + chr5_2:9259236-9259255 Msa0755470:intron 30.0%
!!! CTATTGTTTGTTTTGAAGAG+AGG + chr5_2:9259312-9259331 Msa0755470:intron 30.0%
! AAAGCCTCTAAAGATGAATT+TGG - chr5_2:9259420-9259439 None:intergenic 30.0%
!! TTTGGTGTTTGAAAATCAAG+GGG - chr5_2:9260027-9260046 None:intergenic 30.0%
!!! GTTTTGGTGTTTGAAAATCA+AGG - chr5_2:9260029-9260048 None:intergenic 30.0%
TGCTAAGTCTATGATTAAGA+TGG + chr5_2:9260197-9260216 Msa0755470:CDS 30.0%
GCTAAGTCTATGATTAAGAT+GGG + chr5_2:9260198-9260217 Msa0755470:CDS 30.0%
AAGATCAGTAATAGTCTCAG+AGG - chr5_2:9258496-9258515 None:intergenic 35.0%
AAAAATGTCCCTTAGCTGAA+GGG + chr5_2:9258584-9258603 Msa0755470:CDS 35.0%
CCACGTAAAGAGTTCAAATT+TGG - chr5_2:9258921-9258940 None:intergenic 35.0%
CCAAATTTGAACTCTTTACG+TGG + chr5_2:9258918-9258937 Msa0755470:CDS 35.0%
! ATGTGCTGATATTCTTGCAA+TGG + chr5_2:9259001-9259020 Msa0755470:CDS 35.0%
TTTACTGCTGTTCGGTTATT+TGG - chr5_2:9259160-9259179 None:intergenic 35.0%
AACTGACATTTACTGCTGTT+CGG - chr5_2:9259168-9259187 None:intergenic 35.0%
!!! TTGTTTGTTTTGAAGAGAGG+AGG + chr5_2:9259315-9259334 Msa0755470:intron 35.0%
! CTAAAGATGAATTTGGAGCA+GGG - chr5_2:9259413-9259432 None:intergenic 35.0%
! TCTAAAGATGAATTTGGAGC+AGG - chr5_2:9259414-9259433 None:intergenic 35.0%
TGCTCCAAATTCATCTTTAG+AGG + chr5_2:9259413-9259432 Msa0755470:CDS 35.0%
AATTAGAAGGGGGAAAAAAC+AGG + chr5_2:9259838-9259857 Msa0755470:intron 35.0%
AAAACAGGTAGCCATACAAT+AGG + chr5_2:9259853-9259872 Msa0755470:intron 35.0%
! ATTTTGCCCTTCCTATTGTA+TGG - chr5_2:9259867-9259886 None:intergenic 35.0%
! ATTGAAGGAAAAGGCTTGTT+AGG + chr5_2:9260078-9260097 Msa0755470:CDS 35.0%
TTGATCAGTCAAGACTTTGA+TGG + chr5_2:9260114-9260133 Msa0755470:CDS 35.0%
AAGACTTTGATGGAAGGATT+AGG + chr5_2:9260124-9260143 Msa0755470:CDS 35.0%
AATGTTCTTACTGGAAGTGA+AGG + chr5_2:9260228-9260247 Msa0755470:CDS 35.0%
GAAGTGAAGGTGAAATAAGA+AGG + chr5_2:9260241-9260260 Msa0755470:CDS 35.0%
AAGATCAGTAATAGTCTCAG+AGG - chr5_2:9258496-9258515 None:intergenic 35.0%
AAAAATGTCCCTTAGCTGAA+GGG + chr5_2:9258584-9258603 Msa0755470:CDS 35.0%
CCACGTAAAGAGTTCAAATT+TGG - chr5_2:9258921-9258940 None:intergenic 35.0%
CCAAATTTGAACTCTTTACG+TGG + chr5_2:9258918-9258937 Msa0755470:CDS 35.0%
! ATGTGCTGATATTCTTGCAA+TGG + chr5_2:9259001-9259020 Msa0755470:CDS 35.0%
TTTACTGCTGTTCGGTTATT+TGG - chr5_2:9259160-9259179 None:intergenic 35.0%
AACTGACATTTACTGCTGTT+CGG - chr5_2:9259168-9259187 None:intergenic 35.0%
!!! TTGTTTGTTTTGAAGAGAGG+AGG + chr5_2:9259315-9259334 Msa0755470:intron 35.0%
! CTAAAGATGAATTTGGAGCA+GGG - chr5_2:9259413-9259432 None:intergenic 35.0%
! TCTAAAGATGAATTTGGAGC+AGG - chr5_2:9259414-9259433 None:intergenic 35.0%
TGCTCCAAATTCATCTTTAG+AGG + chr5_2:9259413-9259432 Msa0755470:CDS 35.0%
AATTAGAAGGGGGAAAAAAC+AGG + chr5_2:9259838-9259857 Msa0755470:intron 35.0%
AAAACAGGTAGCCATACAAT+AGG + chr5_2:9259853-9259872 Msa0755470:intron 35.0%
! ATTTTGCCCTTCCTATTGTA+TGG - chr5_2:9259867-9259886 None:intergenic 35.0%
! ATTGAAGGAAAAGGCTTGTT+AGG + chr5_2:9260078-9260097 Msa0755470:CDS 35.0%
TTGATCAGTCAAGACTTTGA+TGG + chr5_2:9260114-9260133 Msa0755470:CDS 35.0%
AAGACTTTGATGGAAGGATT+AGG + chr5_2:9260124-9260143 Msa0755470:CDS 35.0%
AATGTTCTTACTGGAAGTGA+AGG + chr5_2:9260228-9260247 Msa0755470:CDS 35.0%
GAAGTGAAGGTGAAATAAGA+AGG + chr5_2:9260241-9260260 Msa0755470:CDS 35.0%
GAAAAATGTCCCTTAGCTGA+AGG + chr5_2:9258583-9258602 Msa0755470:CDS 40.0%
GATAGTGAGACATAACGTAG+CGG + chr5_2:9258606-9258625 Msa0755470:CDS 40.0%
!! GTACTTTTGGACAGTGTTGA+GGG + chr5_2:9258870-9258889 Msa0755470:CDS 40.0%
ATGACAAGTGAGAAAGAAGC+TGG + chr5_2:9258894-9258913 Msa0755470:CDS 40.0%
! TGTTCGGTTATTTGGTGACT+CGG - chr5_2:9259152-9259171 None:intergenic 40.0%
TCCACTGAAACTTGACTCAA+GGG - chr5_2:9259376-9259395 None:intergenic 40.0%
! AATTTGGAGCAGGGATGAAT+AGG - chr5_2:9259404-9259423 None:intergenic 40.0%
TAATTTCAAGCAACAGGGTC+TGG + chr5_2:9259446-9259465 Msa0755470:CDS 40.0%
ATATACCTGATAGAACCACC+AGG - chr5_2:9259482-9259501 None:intergenic 40.0%
AGGTAGCCATACAATAGGAA+GGG + chr5_2:9259858-9259877 Msa0755470:intron 40.0%
GGGCAAAATGTTTAAGCTTC+CGG + chr5_2:9259878-9259897 Msa0755470:CDS 40.0%
TTGTTTCATAGATCCTCTGC+CGG - chr5_2:9259900-9259919 None:intergenic 40.0%
TAATAGGACATATGGACCGT+AGG - chr5_2:9259981-9260000 None:intergenic 40.0%
CATATGTCCTATTACCGGAA+GGG + chr5_2:9259987-9260006 Msa0755470:CDS 40.0%
TGCAAATTTGTCATCCCTTC+CGG - chr5_2:9260004-9260023 None:intergenic 40.0%
TCAGTCAAGACTTTGATGGA+AGG + chr5_2:9260118-9260137 Msa0755470:CDS 40.0%
ACTTTGATGGAAGGATTAGG+AGG + chr5_2:9260127-9260146 Msa0755470:CDS 40.0%
GAAAAATGTCCCTTAGCTGA+AGG + chr5_2:9258583-9258602 Msa0755470:CDS 40.0%
GATAGTGAGACATAACGTAG+CGG + chr5_2:9258606-9258625 Msa0755470:CDS 40.0%
!! GTACTTTTGGACAGTGTTGA+GGG + chr5_2:9258870-9258889 Msa0755470:CDS 40.0%
ATGACAAGTGAGAAAGAAGC+TGG + chr5_2:9258894-9258913 Msa0755470:CDS 40.0%
! TGTTCGGTTATTTGGTGACT+CGG - chr5_2:9259152-9259171 None:intergenic 40.0%
TCCACTGAAACTTGACTCAA+GGG - chr5_2:9259376-9259395 None:intergenic 40.0%
! AATTTGGAGCAGGGATGAAT+AGG - chr5_2:9259404-9259423 None:intergenic 40.0%
TAATTTCAAGCAACAGGGTC+TGG + chr5_2:9259446-9259465 Msa0755470:CDS 40.0%
ATATACCTGATAGAACCACC+AGG - chr5_2:9259482-9259501 None:intergenic 40.0%
AGGTAGCCATACAATAGGAA+GGG + chr5_2:9259858-9259877 Msa0755470:intron 40.0%
GGGCAAAATGTTTAAGCTTC+CGG + chr5_2:9259878-9259897 Msa0755470:CDS 40.0%
TTGTTTCATAGATCCTCTGC+CGG - chr5_2:9259900-9259919 None:intergenic 40.0%
TAATAGGACATATGGACCGT+AGG - chr5_2:9259981-9260000 None:intergenic 40.0%
CATATGTCCTATTACCGGAA+GGG + chr5_2:9259987-9260006 Msa0755470:CDS 40.0%
TGCAAATTTGTCATCCCTTC+CGG - chr5_2:9260004-9260023 None:intergenic 40.0%
TCAGTCAAGACTTTGATGGA+AGG + chr5_2:9260118-9260137 Msa0755470:CDS 40.0%
ACTTTGATGGAAGGATTAGG+AGG + chr5_2:9260127-9260146 Msa0755470:CDS 40.0%
CTCACTATCCCTTCAGCTAA+GGG - chr5_2:9258595-9258614 None:intergenic 45.0%
TCTCACTATCCCTTCAGCTA+AGG - chr5_2:9258596-9258615 None:intergenic 45.0%
! ATATAAGGGGTGCGATGCAT+CGG + chr5_2:9258848-9258867 Msa0755470:intron 45.0%
! GGTACTTTTGGACAGTGTTG+AGG + chr5_2:9258869-9258888 Msa0755470:CDS 45.0%
TCAGCACATGAAACAGTGAG+AGG - chr5_2:9258990-9259009 None:intergenic 45.0%
TGCTCGTGATGCTGTTGAAT+TGG + chr5_2:9259025-9259044 Msa0755470:CDS 45.0%
TTGCAGTTCGATGTCGAGTT+CGG - chr5_2:9259118-9259137 None:intergenic 45.0%
!! GTTATTTGGTGACTCGGTCA+TGG - chr5_2:9259146-9259165 None:intergenic 45.0%
TCCCTTGAGTCAAGTTTCAG+TGG + chr5_2:9259372-9259391 Msa0755470:CDS 45.0%
CTCCACTGAAACTTGACTCA+AGG - chr5_2:9259377-9259396 None:intergenic 45.0%
TCTGGATATTGAAGACCTGG+TGG + chr5_2:9259464-9259483 Msa0755470:CDS 45.0%
CAGGTAGCCATACAATAGGA+AGG + chr5_2:9259857-9259876 Msa0755470:intron 45.0%
AATGTTTAAGCTTCCGGCAG+AGG + chr5_2:9259884-9259903 Msa0755470:CDS 45.0%
CAACCTTCAGAAGAGTCCTA+CGG + chr5_2:9259962-9259981 Msa0755470:CDS 45.0%
CGGTCCATATGTCCTATTAC+CGG + chr5_2:9259982-9260001 Msa0755470:CDS 45.0%
CCTTCCGGTAATAGGACATA+TGG - chr5_2:9259989-9260008 None:intergenic 45.0%
CCATATGTCCTATTACCGGA+AGG + chr5_2:9259986-9260005 Msa0755470:CDS 45.0%
TTGTCATCCCTTCCGGTAAT+AGG - chr5_2:9259997-9260016 None:intergenic 45.0%
AAGGATTAGGAGGCAGGTTT+GGG + chr5_2:9260137-9260156 Msa0755470:CDS 45.0%
CTCACTATCCCTTCAGCTAA+GGG - chr5_2:9258595-9258614 None:intergenic 45.0%
TCTCACTATCCCTTCAGCTA+AGG - chr5_2:9258596-9258615 None:intergenic 45.0%
! ATATAAGGGGTGCGATGCAT+CGG + chr5_2:9258848-9258867 Msa0755470:intron 45.0%
! GGTACTTTTGGACAGTGTTG+AGG + chr5_2:9258869-9258888 Msa0755470:CDS 45.0%
TCAGCACATGAAACAGTGAG+AGG - chr5_2:9258990-9259009 None:intergenic 45.0%
TGCTCGTGATGCTGTTGAAT+TGG + chr5_2:9259025-9259044 Msa0755470:CDS 45.0%
TTGCAGTTCGATGTCGAGTT+CGG - chr5_2:9259118-9259137 None:intergenic 45.0%
!! GTTATTTGGTGACTCGGTCA+TGG - chr5_2:9259146-9259165 None:intergenic 45.0%
TCCCTTGAGTCAAGTTTCAG+TGG + chr5_2:9259372-9259391 Msa0755470:CDS 45.0%
CTCCACTGAAACTTGACTCA+AGG - chr5_2:9259377-9259396 None:intergenic 45.0%
TCTGGATATTGAAGACCTGG+TGG + chr5_2:9259464-9259483 Msa0755470:CDS 45.0%
CAGGTAGCCATACAATAGGA+AGG + chr5_2:9259857-9259876 Msa0755470:intron 45.0%
AATGTTTAAGCTTCCGGCAG+AGG + chr5_2:9259884-9259903 Msa0755470:CDS 45.0%
CAACCTTCAGAAGAGTCCTA+CGG + chr5_2:9259962-9259981 Msa0755470:CDS 45.0%
CGGTCCATATGTCCTATTAC+CGG + chr5_2:9259982-9260001 Msa0755470:CDS 45.0%
CCTTCCGGTAATAGGACATA+TGG - chr5_2:9259989-9260008 None:intergenic 45.0%
CCATATGTCCTATTACCGGA+AGG + chr5_2:9259986-9260005 Msa0755470:CDS 45.0%
TTGTCATCCCTTCCGGTAAT+AGG - chr5_2:9259997-9260016 None:intergenic 45.0%
AAGGATTAGGAGGCAGGTTT+GGG + chr5_2:9260137-9260156 Msa0755470:CDS 45.0%
!! GTGCGATGCATCGGTACTTT+TGG + chr5_2:9258857-9258876 Msa0755470:CDS 50.0%
TGAAGAGAGGAGGACCAAGA+TGG + chr5_2:9259325-9259344 Msa0755470:intron 50.0%
GAAGAGAGGAGGACCAAGAT+GGG + chr5_2:9259326-9259345 Msa0755470:intron 50.0%
TGGAGCAGGGATGAATAGGT+TGG - chr5_2:9259400-9259419 None:intergenic 50.0%
GGGTCTGGATATTGAAGACC+TGG + chr5_2:9259461-9259480 Msa0755470:CDS 50.0%
! GAAGACCTGGTGGTTCTATC+AGG + chr5_2:9259474-9259493 Msa0755470:CDS 50.0%
TGATGGAAGGATTAGGAGGC+AGG + chr5_2:9260131-9260150 Msa0755470:CDS 50.0%
GAAGGATTAGGAGGCAGGTT+TGG + chr5_2:9260136-9260155 Msa0755470:CDS 50.0%
AGGATTAGGAGGCAGGTTTG+GGG + chr5_2:9260138-9260157 Msa0755470:CDS 50.0%
!! GTGCGATGCATCGGTACTTT+TGG + chr5_2:9258857-9258876 Msa0755470:CDS 50.0%
TGAAGAGAGGAGGACCAAGA+TGG + chr5_2:9259325-9259344 Msa0755470:intron 50.0%
GAAGAGAGGAGGACCAAGAT+GGG + chr5_2:9259326-9259345 Msa0755470:intron 50.0%
TGGAGCAGGGATGAATAGGT+TGG - chr5_2:9259400-9259419 None:intergenic 50.0%
GGGTCTGGATATTGAAGACC+TGG + chr5_2:9259461-9259480 Msa0755470:CDS 50.0%
! GAAGACCTGGTGGTTCTATC+AGG + chr5_2:9259474-9259493 Msa0755470:CDS 50.0%
TGATGGAAGGATTAGGAGGC+AGG + chr5_2:9260131-9260150 Msa0755470:CDS 50.0%
GAAGGATTAGGAGGCAGGTT+TGG + chr5_2:9260136-9260155 Msa0755470:CDS 50.0%
AGGATTAGGAGGCAGGTTTG+GGG + chr5_2:9260138-9260157 Msa0755470:CDS 50.0%
AGTAGCGACGCTGCTATACG+TGG - chr5_2:9258649-9258668 None:intergenic 55.0%
GTAGGTCTAGCGCAAGTGGT+TGG - chr5_2:9258758-9258777 None:intergenic 55.0%
CCACTTGCGCTAGACCTACA+CGG + chr5_2:9258759-9258778 Msa0755470:intron 55.0%
GAGGACCAAGATGGGATGTG+TGG + chr5_2:9259334-9259353 Msa0755470:CDS 55.0%
ACCAAGATGGGATGTGTGGC+TGG + chr5_2:9259338-9259357 Msa0755470:CDS 55.0%
CCAAGATGGGATGTGTGGCT+GGG + chr5_2:9259339-9259358 Msa0755470:CDS 55.0%
CAAGATGGGATGTGTGGCTG+GGG + chr5_2:9259340-9259359 Msa0755470:CDS 55.0%
GGACCGTAGGACTCTTCTGA+AGG - chr5_2:9259968-9259987 None:intergenic 55.0%
AGTAGCGACGCTGCTATACG+TGG - chr5_2:9258649-9258668 None:intergenic 55.0%
GTAGGTCTAGCGCAAGTGGT+TGG - chr5_2:9258758-9258777 None:intergenic 55.0%
CCACTTGCGCTAGACCTACA+CGG + chr5_2:9258759-9258778 Msa0755470:intron 55.0%
GAGGACCAAGATGGGATGTG+TGG + chr5_2:9259334-9259353 Msa0755470:CDS 55.0%
ACCAAGATGGGATGTGTGGC+TGG + chr5_2:9259338-9259357 Msa0755470:CDS 55.0%
CCAAGATGGGATGTGTGGCT+GGG + chr5_2:9259339-9259358 Msa0755470:CDS 55.0%
CAAGATGGGATGTGTGGCTG+GGG + chr5_2:9259340-9259359 Msa0755470:CDS 55.0%
GGACCGTAGGACTCTTCTGA+AGG - chr5_2:9259968-9259987 None:intergenic 55.0%
CCGTGTAGGTCTAGCGCAAG+TGG - chr5_2:9258762-9258781 None:intergenic 60.0%
CCCAGCCACACATCCCATCT+TGG - chr5_2:9259342-9259361 None:intergenic 60.0%
CCGTGTAGGTCTAGCGCAAG+TGG - chr5_2:9258762-9258781 None:intergenic 60.0%
CCCAGCCACACATCCCATCT+TGG - chr5_2:9259342-9259361 None:intergenic 60.0%
GATGGGATGTGTGGCTGGGG+AGG + chr5_2:9259343-9259362 Msa0755470:CDS 65.0%
GGATGTGTGGCTGGGGAGGA+AGG + chr5_2:9259347-9259366 Msa0755470:CDS 65.0%
GATGGGATGTGTGGCTGGGG+AGG + chr5_2:9259343-9259362 Msa0755470:CDS 65.0%
GGATGTGTGGCTGGGGAGGA+AGG + chr5_2:9259347-9259366 Msa0755470:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 9258487 9260287 9258487 ID=Msa0755470;Name=Msa0755470
chr5_2 mRNA 9258487 9260287 9258487 ID=Msa0755470-mRNA-1;Parent=Msa0755470;Name=Msa0755470-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|4|0|332
chr5_2 exon 9258487 9258699 9258487 ID=Msa0755470-mRNA-1:exon:4282;Parent=Msa0755470-mRNA-1
chr5_2 exon 9258855 9259046 9258855 ID=Msa0755470-mRNA-1:exon:4283;Parent=Msa0755470-mRNA-1
chr5_2 exon 9259330 9259495 9259330 ID=Msa0755470-mRNA-1:exon:4284;Parent=Msa0755470-mRNA-1
chr5_2 exon 9259860 9260287 9259860 ID=Msa0755470-mRNA-1:exon:4285;Parent=Msa0755470-mRNA-1
chr5_2 CDS 9258487 9258699 9258487 ID=Msa0755470-mRNA-1:cds;Parent=Msa0755470-mRNA-1
chr5_2 CDS 9258855 9259046 9258855 ID=Msa0755470-mRNA-1:cds;Parent=Msa0755470-mRNA-1
chr5_2 CDS 9259330 9259495 9259330 ID=Msa0755470-mRNA-1:cds;Parent=Msa0755470-mRNA-1
chr5_2 CDS 9259860 9260287 9259860 ID=Msa0755470-mRNA-1:cds;Parent=Msa0755470-mRNA-1
Gene Sequence

>Msa0755470

ATGGAGCCTCTGAGACTATTACTGATCTTAATTACTGTTTTGTCAAATATTCACACTCTAAGGGGTAGTGAACTTCTTGTTCATGATTACTACAAGGAAAAATGTCCCTTAGCTGAAGGGATAGTGAGACATAACGTAGCGGTAGAAGTTTTAAAAGATCCACGTATAGCAGCGTCGCTACTTCGATTACACTTCCATGATTGTTTTGTTATGGGGTGCGATGCATCGGTACTTTTGGACAGTGTTGAGGGAATGACAAGTGAGAAAGAAGCTGGACCAAATTTGAACTCTTTACGTGGATTTGAAGTCATTGACAAGATAAAATATTTACTTGAAGAGGAATGTCCTCTCACTGTTTCATGTGCTGATATTCTTGCAATGGTTGCTCGTGATGCTGTTGAATTGAGAGGAGGACCAAGATGGGATGTGTGGCTGGGGAGGAAGGACTCCCTTGAGTCAAGTTTCAGTGGAGCCAACCTATTCATCCCTGCTCCAAATTCATCTTTAGAGGCTTTAATTAATAATTTCAAGCAACAGGGTCTGGATATTGAAGACCTGGTGGTTCTATCAGGTAGCCATACAATAGGAAGGGCAAAATGTTTAAGCTTCCGGCAGAGGATCTATGAAACAAAACATGAATACAACAATGACTATGATCGCTACAAACGATACACAACCTTCAGAAGAGTCCTACGGTCCATATGTCCTATTACCGGAAGGGATGACAAATTTGCACCCCTTGATTTTCAAACACCAAAACGGTTTGATAATCAATACTTCATAAACATTATTGAAGGAAAAGGCTTGTTAGGTTCTGATAATGTTTTGATCAGTCAAGACTTTGATGGAAGGATTAGGAGGCAGGTTTGGGGTTATGCCTCTAATGAAAAACTTTTCTTTGATTCTTTTGCTAAGTCTATGATTAAGATGGGAAATATTAATGTTCTTACTGGAAGTGAAGGTGAAATAAGAAGGAATTGTAGATTTGTCAACCCTTAG
Protein sequence

>Msa0755470

MEPLRLLLILITVLSNIHTLRGSELLVHDYYKEKCPLAEGIVRHNVAVEVLKDPRIAASLLRLHFHDCFVMGCDASVLLDSVEGMTSEKEAGPNLNSLRGFEVIDKIKYLLEEECPLTVSCADILAMVARDAVELRGGPRWDVWLGRKDSLESSFSGANLFIPAPNSSLEALINNFKQQGLDIEDLVVLSGSHTIGRAKCLSFRQRIYETKHEYNNDYDRYKRYTTFRRVLRSICPITGRDDKFAPLDFQTPKRFDNQYFINIIEGKGLLGSDNVLISQDFDGRIRRQVWGYASNEKLFFDSFAKSMIKMGNINVLTGSEGEIRRNCRFVNP*