AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0060410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0060410 MtrunA17_Chr1g0159991 93.915 378 22 1 1 378 1 377 0.0 725
Msa0060410 MtrunA17_Chr1g0160011 84.169 379 56 3 1 378 4 379 0.0 641
Msa0060410 MtrunA17_Chr1g0159981 84.127 378 55 2 1 378 15 387 0.0 640
Msa0060410 MtrunA17_Chr1g0160031 80.952 378 69 2 1 378 4 378 0.0 628
Msa0060410 MtrunA17_Chr1g0159971 69.452 383 109 4 3 378 7 388 0.0 545
Msa0060410 MtrunA17_Chr1g0160101 63.881 371 132 2 9 378 15 384 1.80e-171 483
Msa0060410 MtrunA17_Chr7g0254461 55.914 372 161 2 10 378 17 388 6.78e-154 439
Msa0060410 MtrunA17_Chr8g0381581 55.827 369 159 3 12 377 16 383 1.32e-152 436
Msa0060410 MtrunA17_Chr7g0226941 49.438 356 168 6 28 377 25 374 1.06e-115 341
Msa0060410 MtrunA17_Chr6g0450701 43.005 386 196 7 1 377 4 374 2.62e-102 307
Msa0060410 MtrunA17_Chr7g0273101 46.779 357 176 8 25 374 18 367 2.09e-99 300
Msa0060410 MtrunA17_Chr7g0275291 41.176 374 207 6 10 378 7 372 2.02e-95 290
Msa0060410 MtrunA17_Chr6g0450711 41.266 395 199 9 2 377 77 457 1.50e-94 290
Msa0060410 MtrunA17_Chr7g0226931 41.026 390 194 8 16 377 13 394 5.39e-94 286
Msa0060410 MtrunA17_Chr7g0226911 40.722 388 205 8 7 377 1 380 1.10e-93 285
Msa0060410 MtrunA17_Chr8g0352901 42.188 384 193 9 7 377 1 368 2.71e-93 284
Msa0060410 MtrunA17_Chr1g0191461 43.127 371 196 10 12 375 7 369 1.68e-91 279
Msa0060410 MtrunA17_Chr8g0347751 39.948 388 214 6 1 378 1 379 8.32e-91 278
Msa0060410 MtrunA17_Chr6g0450731 41.243 354 183 7 28 377 25 357 3.38e-89 273
Msa0060410 MtrunA17_Chr6g0450721 39.005 382 192 7 10 377 1 355 1.17e-87 269
Msa0060410 MtrunA17_Chr7g0271551 40.580 345 182 7 36 377 36 360 1.53e-80 251
Msa0060410 MtrunA17_Chr8g0339251 40.634 347 175 9 7 346 1 323 8.29e-74 232
Msa0060410 MtrunA17_Chr3g0104821 35.734 361 191 14 34 375 42 380 9.12e-55 185
Msa0060410 MtrunA17_Chr2g0283531 36.872 358 190 14 34 375 29 366 1.21e-54 184
Msa0060410 MtrunA17_Chr2g0283501 34.341 364 209 8 24 373 18 365 1.12e-53 181
Msa0060410 MtrunA17_Chr2g0283481 33.943 383 216 12 8 373 18 380 1.26e-53 182
Msa0060410 MtrunA17_Chr2g0317261 33.051 354 195 11 34 375 28 351 3.92e-52 177
Msa0060410 MtrunA17_Chr2g0317271 33.051 354 195 11 34 375 28 351 1.60e-51 176
Msa0060410 MtrunA17_Chr0c01g0489571 33.051 354 195 11 34 375 28 351 2.22e-51 175
Msa0060410 MtrunA17_Chr0c01g0489581 32.768 354 196 11 34 375 28 351 7.81e-51 174
Msa0060410 MtrunA17_Chr3g0112821 35.028 354 195 12 34 375 28 358 1.04e-49 171
Msa0060410 MtrunA17_Chr2g0283511 31.688 385 225 10 8 375 5 368 2.49e-47 165
Msa0060410 MtrunA17_Chr2g0301581 34.819 359 180 13 34 375 32 353 2.90e-47 164
Msa0060410 MtrunA17_Chr3g0093031 34.540 359 195 13 34 375 28 363 6.79e-47 164
Msa0060410 MtrunA17_Chr4g0057991 31.565 377 217 12 14 374 17 368 1.44e-46 163
Msa0060410 MtrunA17_Chr3g0112691 34.551 356 197 12 34 375 28 361 1.47e-46 162
Msa0060410 MtrunA17_Chr2g0301541 34.540 359 181 13 34 375 32 353 1.16e-45 160
Msa0060410 MtrunA17_Chr3g0096551 33.423 371 195 13 34 375 27 374 4.22e-44 156
Msa0060410 MtrunA17_Chr4g0027521 31.897 348 200 11 35 370 26 348 3.06e-40 145
Msa0060410 MtrunA17_Chr8g0349341 31.361 338 202 8 36 368 37 349 4.25e-40 145
Msa0060410 MtrunA17_Chr8g0349321 31.953 338 200 10 36 368 37 349 9.51e-37 136
Msa0060410 MtrunA17_Chr8g0341001 30.612 343 199 11 35 365 31 346 1.41e-36 135
Msa0060410 MtrunA17_Chr8g0344941 30.645 372 205 13 13 365 18 355 1.26e-35 134
Msa0060410 MtrunA17_Chr2g0330781 30.321 343 200 13 35 365 30 345 1.41e-34 130
Msa0060410 MtrunA17_Chr3g0120861 28.732 355 211 14 29 370 31 356 2.94e-33 127
Msa0060410 MtrunA17_Chr3g0104831 31.597 288 163 10 101 375 33 299 5.88e-33 125
Msa0060410 MtrunA17_Chr5g0438621 28.846 364 210 14 10 360 11 338 7.82e-33 125
Msa0060410 MtrunA17_Chr5g0432101 28.689 366 213 15 15 361 8 344 1.54e-32 125
Msa0060410 MtrunA17_Chr2g0301591 32.468 308 151 11 15 299 10 283 6.09e-32 122
Msa0060410 MtrunA17_Chr5g0438631 29.650 371 209 16 10 361 1 338 6.95e-32 123
Msa0060410 MtrunA17_Chr1g0156911 30.233 344 197 12 31 361 32 345 7.63e-32 123
Msa0060410 MtrunA17_Chr8g0380041 27.366 391 233 11 4 378 1 356 1.13e-31 122
Msa0060410 MtrunA17_Chr2g0285061 27.671 365 220 10 10 361 8 341 4.59e-31 121
Msa0060410 MtrunA17_Chr5g0396511 28.977 352 212 13 38 378 48 372 4.95e-31 121
Msa0060410 MtrunA17_Chr8g0349301 30.392 306 186 9 36 336 37 320 6.03e-31 120
Msa0060410 MtrunA17_Chr5g0438641 29.620 368 213 13 8 361 6 341 6.76e-31 120
Msa0060410 MtrunA17_Chr2g0320671 28.739 341 207 10 35 365 29 343 1.14e-30 120
Msa0060410 MtrunA17_Chr2g0301641 29.275 345 212 12 36 371 43 364 1.74e-30 120
Msa0060410 MtrunA17_Chr1g0156891 28.771 358 214 12 15 359 21 350 2.49e-30 119
Msa0060410 MtrunA17_Chr3g0142921 28.614 339 202 11 31 357 31 341 2.68e-30 119
Msa0060410 MtrunA17_Chr3g0105401 29.619 341 197 13 35 361 27 338 3.16e-30 119
Msa0060410 MtrunA17_Chr1g0156931 28.779 344 209 11 31 365 36 352 4.81e-30 118
Msa0060410 MtrunA17_Chr2g0301551 31.068 309 162 11 82 375 37 309 5.25e-30 117
Msa0060410 MtrunA17_Chr2g0294311 28.906 384 216 16 12 372 12 361 6.66e-30 118
Msa0060410 MtrunA17_Chr2g0283541 34.211 228 134 8 154 375 75 292 8.17e-30 116
Msa0060410 MtrunA17_Chr1g0156901 27.859 341 205 12 31 359 45 356 1.56e-29 117
Msa0060410 MtrunA17_Chr8g0374101 28.056 360 215 13 26 368 28 360 3.09e-29 116
Msa0060410 MtrunA17_Chr2g0301571 30.744 309 163 11 82 375 37 309 4.67e-29 114
Msa0060410 MtrunA17_Chr8g0349331 28.090 356 192 10 15 361 10 310 5.05e-29 115
Msa0060410 MtrunA17_Chr1g0156921 27.763 371 219 16 7 359 10 349 2.09e-28 114
Msa0060410 MtrunA17_Chr4g0068441 27.704 379 234 11 7 372 5 356 7.75e-28 112
Msa0060410 MtrunA17_Chr3g0142941 28.940 349 204 12 20 357 36 351 8.02e-28 112
Msa0060410 MtrunA17_Chr3g0086641 27.419 372 222 12 4 361 9 346 9.55e-28 112
Msa0060410 MtrunA17_Chr7g0274991 30.226 354 191 13 36 369 33 350 1.82e-27 111
Msa0060410 MtrunA17_Chr7g0275011 30.194 361 199 13 36 378 34 359 2.45e-27 111
Msa0060410 MtrunA17_Chr5g0405821 30.655 336 193 14 35 357 42 350 2.50e-27 111
Msa0060410 MtrunA17_Chr8g0344931 30.499 341 197 9 36 368 37 345 2.80e-27 110
Msa0060410 MtrunA17_Chr4g0008851 27.919 394 230 15 4 378 1 359 4.05e-27 110
Msa0060410 MtrunA17_Chr3g0131321 26.984 378 227 11 13 374 11 355 1.22e-26 109
Msa0060410 MtrunA17_Chr2g0294301 28.653 349 210 11 36 372 35 356 1.75e-26 108
Msa0060410 MtrunA17_Chr1g0157001 28.296 311 192 11 60 365 63 347 2.36e-26 108
Msa0060410 MtrunA17_Chr6g0457921 27.604 384 224 14 11 373 3 353 2.58e-26 108
Msa0060410 MtrunA17_Chr3g0092131 27.273 363 221 14 15 365 5 336 3.88e-26 107
Msa0060410 MtrunA17_Chr2g0283191 27.614 373 211 15 16 362 18 357 4.14e-26 107
Msa0060410 MtrunA17_Chr5g0444401 29.775 356 198 16 35 371 27 349 5.73e-26 107
Msa0060410 MtrunA17_Chr8g0371481 27.350 351 210 12 30 365 35 355 9.96e-26 106
Msa0060410 MtrunA17_Chr3g0099151 29.345 351 201 13 35 368 86 406 1.08e-25 107
Msa0060410 MtrunA17_Chr3g0077571 26.649 379 232 12 10 378 8 350 1.19e-25 106
Msa0060410 MtrunA17_Chr5g0405831 26.823 384 237 13 3 372 11 364 2.42e-25 105
Msa0060410 MtrunA17_Chr5g0434621 27.937 315 180 12 68 370 62 341 2.61e-25 105
Msa0060410 MtrunA17_Chr3g0099161 30.362 359 198 18 35 373 91 417 3.08e-25 106
Msa0060410 MtrunA17_Chr7g0275001 27.841 352 203 12 36 369 25 343 4.23e-25 104
Msa0060410 MtrunA17_Chr1g0182811 30.471 361 200 15 36 378 33 360 5.31e-25 104
Msa0060410 MtrunA17_Chr3g0077581 27.429 350 220 11 35 373 35 361 5.56e-25 104
Msa0060410 MtrunA17_Chr7g0275021 27.714 350 205 11 36 369 34 351 5.61e-25 104
Msa0060410 MtrunA17_Chr4g0046151 28.278 389 214 18 9 368 14 366 6.88e-25 104
Msa0060410 MtrunA17_Chr3g0099231 28.771 358 204 16 35 373 27 352 5.90e-24 102
Msa0060410 MtrunA17_Chr4g0027571 29.778 225 138 5 147 365 3 213 2.48e-23 97.1
Msa0060410 MtrunA17_Chr1g0189891 29.917 361 195 15 36 378 29 349 3.52e-23 99.4
Msa0060410 MtrunA17_Chr5g0437421 26.301 346 217 12 35 368 31 350 1.35e-22 97.8
Msa0060410 MtrunA17_Chr1g0189931 27.966 354 199 13 36 369 32 349 5.22e-22 96.3
Msa0060410 MtrunA17_Chr8g0371471 26.062 353 211 13 30 365 35 354 1.22e-21 95.1
Msa0060410 MtrunA17_Chr5g0420811 27.451 357 210 11 15 360 12 330 1.72e-21 94.4
Msa0060410 MtrunA17_Chr7g0215961 26.064 376 221 12 6 369 7 337 2.85e-21 94.0
Msa0060410 MtrunA17_Chr3g0085231 26.554 354 210 9 35 378 30 343 3.63e-21 93.6
Msa0060410 MtrunA17_Chr8g0371491 27.100 369 214 15 7 361 18 345 7.50e-21 92.8
Msa0060410 MtrunA17_Chr1g0189901 28.531 354 197 16 36 369 31 348 1.06e-20 92.4
Msa0060410 MtrunA17_Chr7g0266061 25.364 343 201 13 37 365 43 344 2.31e-20 91.3
Msa0060410 MtrunA17_Chr1g0178931 24.501 351 215 14 28 366 27 339 9.69e-20 89.4
Msa0060410 MtrunA17_Chr7g0229581 32.919 161 94 3 209 369 4 150 1.55e-19 84.7
Msa0060410 MtrunA17_Chr4g0060811 25.294 340 214 12 38 365 29 340 3.35e-19 88.2
Msa0060410 MtrunA17_Chr2g0284991 24.282 383 245 11 4 373 1 351 5.59e-19 87.4
Msa0060410 MtrunA17_Chr2g0301561 30.172 232 135 8 82 300 37 254 1.32e-18 84.7
Msa0060410 MtrunA17_Chr2g0285001 26.471 340 202 15 35 361 32 336 1.45e-18 86.3
Msa0060410 MtrunA17_Chr1g0198351 25.753 365 222 13 1 352 2 330 3.20e-18 85.1
Msa0060410 MtrunA17_Chr6g0459921 27.344 256 143 7 127 361 106 339 4.54e-18 84.7
Msa0060410 MtrunA17_Chr4g0017431 23.481 362 229 11 15 360 10 339 1.14e-17 83.6
Msa0060410 MtrunA17_Chr6g0455661 28.293 205 117 5 166 361 267 450 1.30e-17 84.0
Msa0060410 MtrunA17_Chr2g0284951 25.140 358 223 12 12 360 9 330 1.93e-17 82.8
Msa0060410 MtrunA17_Chr8g0370951 23.136 389 231 15 8 368 4 352 2.85e-16 79.3
Msa0060410 MtrunA17_Chr8g0380031 25.444 338 201 12 35 360 83 381 4.52e-16 79.3
Msa0060410 MtrunA17_Chr3g0085881 24.850 334 206 11 35 360 32 328 6.10e-16 78.2
Msa0060410 MtrunA17_Chr1g0198391 25.429 350 216 12 31 362 28 350 6.21e-16 78.6
Msa0060410 MtrunA17_Chr3g0104801 41.880 117 59 5 34 142 42 157 2.15e-15 73.6
Msa0060410 MtrunA17_Chr1g0198381 24.269 342 209 11 37 367 3 305 1.49e-14 73.9
Msa0060410 MtrunA17_Chr5g0440501 25.197 254 159 8 132 376 6 237 1.39e-13 70.1
Msa0060410 MtrunA17_Chr8g0370961 24.519 208 136 5 165 369 41 230 1.53e-13 69.7
Msa0060410 MtrunA17_Chr6g0469521 35.644 101 62 1 212 312 31 128 4.61e-13 66.2
Msa0060410 MtrunA17_Chr4g0018571 28.571 161 91 4 210 365 28 169 1.05e-11 63.2
Msa0060410 MtrunA17_Chr7g0273111 38.750 80 46 2 12 89 11 89 1.80e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0060410 AT3G26430.1 53.226 372 170 3 9 377 4 374 3.93e-143 411
Msa0060410 AT1G67830.1 54.839 341 150 3 31 368 25 364 1.47e-137 397
Msa0060410 AT5G14450.1 47.200 375 174 6 15 377 20 382 5.72e-118 348
Msa0060410 AT3G27950.1 47.059 374 172 9 13 376 8 365 2.48e-103 310
Msa0060410 AT1G54790.3 44.118 374 195 11 7 374 5 370 2.06e-94 287
Msa0060410 AT1G54790.1 43.562 365 194 9 16 374 11 369 5.37e-93 284
Msa0060410 AT4G01130.1 41.240 371 207 7 14 378 12 377 4.40e-89 273
Msa0060410 AT1G54790.2 40.665 391 194 10 16 374 11 395 3.49e-87 270
Msa0060410 AT1G56670.1 41.667 372 195 9 10 378 16 368 5.88e-87 268
Msa0060410 AT3G05180.1 42.898 352 189 6 33 378 33 378 9.53e-87 268
Msa0060410 AT1G09390.1 40.052 382 208 8 1 378 1 365 2.87e-86 266
Msa0060410 AT3G62280.1 39.660 353 179 11 35 378 35 362 5.21e-71 226
Msa0060410 AT4G01130.2 41.781 292 160 6 14 300 12 298 6.33e-69 220
Msa0060410 AT1G56670.2 41.297 293 159 6 10 300 16 297 3.33e-64 207
Msa0060410 AT4G01130.3 38.176 296 172 7 89 378 1 291 3.15e-61 199
Msa0060410 AT1G28600.1 35.733 389 211 11 1 374 1 365 4.95e-61 201
Msa0060410 AT1G28640.1 34.465 383 209 10 12 373 8 369 2.56e-58 194
Msa0060410 AT1G28650.1 34.794 388 211 11 7 373 5 371 4.92e-57 191
Msa0060410 AT1G28590.1 34.097 393 218 9 1 374 1 371 5.19e-57 191
Msa0060410 AT1G31550.2 34.359 390 220 10 1 374 1 370 5.72e-57 191
Msa0060410 AT1G28580.1 33.420 383 216 10 12 374 9 372 1.39e-56 190
Msa0060410 AT1G28610.2 34.278 388 216 11 1 373 1 364 1.80e-56 189
Msa0060410 AT1G28670.1 35.620 379 211 11 12 373 8 370 7.56e-55 185
Msa0060410 AT1G31550.1 33.419 389 222 10 1 374 1 367 1.42e-53 182
Msa0060410 AT2G27360.1 34.031 382 217 11 9 374 7 369 3.69e-52 178
Msa0060410 AT1G28570.1 32.552 384 220 11 10 374 6 369 3.01e-51 176
Msa0060410 AT5G45910.1 34.383 381 212 12 12 373 8 369 3.13e-51 175
Msa0060410 AT1G28660.2 33.247 385 210 12 12 373 8 368 3.89e-51 176
Msa0060410 AT3G62280.2 39.273 275 148 8 35 304 35 295 6.84e-51 172
Msa0060410 AT1G28660.1 33.679 386 208 13 12 373 8 369 1.41e-50 174
Msa0060410 AT3G48460.1 28.760 379 227 9 13 373 15 368 6.61e-43 154
Msa0060410 AT1G28580.2 31.126 302 181 7 82 374 8 291 5.59e-40 144
Msa0060410 AT3G16370.1 31.454 337 196 11 35 361 29 340 1.98e-33 127
Msa0060410 AT4G10950.2 28.169 355 217 11 35 378 70 397 5.37e-33 127
Msa0060410 AT2G23540.1 29.775 356 195 14 36 368 48 371 1.31e-32 126
Msa0060410 AT2G42990.1 29.396 364 212 15 14 364 9 340 2.08e-32 125
Msa0060410 AT2G04570.1 27.838 370 228 14 11 370 6 346 4.52e-32 124
Msa0060410 AT5G40990.1 29.738 343 209 9 36 368 37 357 7.17e-32 124
Msa0060410 AT4G26790.1 29.107 347 200 14 34 365 27 342 2.97e-31 122
Msa0060410 AT4G26790.2 29.107 347 200 14 34 365 27 342 2.97e-31 122
Msa0060410 AT1G53940.2 29.894 378 223 11 11 368 4 359 5.96e-31 121
Msa0060410 AT5G22810.1 29.855 345 201 12 35 365 33 350 7.08e-31 121
Msa0060410 AT1G59406.1 28.261 368 227 12 7 365 1 340 8.75e-31 120
Msa0060410 AT1G59030.1 28.261 368 227 12 7 365 1 340 8.75e-31 120
Msa0060410 AT1G58725.1 28.261 368 227 12 7 365 1 340 8.75e-31 120
Msa0060410 AT4G10950.1 27.887 355 214 12 35 378 70 393 1.09e-30 121
Msa0060410 AT1G75900.1 28.614 339 203 13 34 361 41 351 2.00e-30 120
Msa0060410 AT1G29670.2 26.630 368 233 11 4 361 67 407 2.38e-30 120
Msa0060410 AT1G29670.1 26.722 363 229 11 9 361 4 339 3.49e-30 119
Msa0060410 AT5G45670.1 27.297 370 228 10 1 361 1 338 4.04e-30 119
Msa0060410 AT1G20120.1 30.447 358 208 15 29 372 71 401 4.80e-30 119
Msa0060410 AT5G03820.1 28.116 345 206 12 35 365 32 348 4.88e-30 119
Msa0060410 AT5G03820.2 28.116 345 206 12 35 365 60 376 1.01e-29 118
Msa0060410 AT5G08460.1 28.531 354 211 11 34 372 47 373 1.65e-29 117
Msa0060410 AT5G15720.1 27.596 337 210 9 35 361 29 341 1.93e-29 117
Msa0060410 AT5G42170.1 28.779 344 208 13 31 365 45 360 1.97e-29 117
Msa0060410 AT5G45950.1 27.729 339 203 13 36 364 40 346 2.53e-29 116
Msa0060410 AT4G18970.1 27.083 336 211 8 35 361 27 337 3.96e-29 116
Msa0060410 AT4G18970.2 27.083 336 211 8 35 361 27 337 9.00e-29 116
Msa0060410 AT5G03810.1 26.875 320 188 11 60 365 57 344 1.70e-28 114
Msa0060410 AT1G53920.1 26.630 368 231 9 4 355 7 351 2.72e-28 114
Msa0060410 AT1G28570.2 27.843 255 149 4 125 374 73 297 2.89e-28 113
Msa0060410 AT1G28570.3 30.882 204 128 3 176 374 11 206 3.95e-28 110
Msa0060410 AT3G14225.2 30.814 344 204 10 36 368 37 357 6.45e-28 113
Msa0060410 AT1G20130.2 29.630 351 200 14 30 361 178 500 7.85e-28 114
Msa0060410 AT1G20130.1 29.310 348 205 13 30 361 198 520 8.26e-28 114
Msa0060410 AT5G63170.1 28.729 362 200 14 11 357 3 321 1.64e-27 111
Msa0060410 AT3G14225.1 30.725 345 207 11 36 368 37 361 3.33e-27 111
Msa0060410 AT1G06990.1 26.979 341 208 12 34 361 35 347 3.65e-27 110
Msa0060410 AT1G75880.2 28.184 369 218 14 15 365 26 365 3.94e-27 110
Msa0060410 AT1G75880.1 28.184 369 219 13 15 365 26 366 4.15e-27 110
Msa0060410 AT1G71120.1 26.431 367 207 10 23 368 18 342 6.58e-27 110
Msa0060410 AT2G30310.1 28.116 345 204 12 28 357 26 341 2.25e-26 108
Msa0060410 AT3G53100.1 27.763 371 227 14 7 365 1 342 2.32e-26 108
Msa0060410 AT2G30220.1 28.152 341 201 13 34 359 31 342 2.43e-26 108
Msa0060410 AT1G58520.3 27.907 344 204 13 31 365 25 333 3.08e-26 108
Msa0060410 AT1G58525.1 27.907 344 204 13 31 365 25 333 3.08e-26 108
Msa0060410 AT1G20132.1 28.986 345 193 15 35 361 60 370 3.14e-26 108
Msa0060410 AT3G50400.1 27.933 358 200 15 36 368 34 358 3.79e-26 108
Msa0060410 AT1G29660.1 26.757 370 224 12 6 361 4 340 5.31e-26 107
Msa0060410 AT1G58430.1 27.729 339 201 11 34 357 33 342 7.84e-26 107
Msa0060410 AT2G24560.1 29.799 349 191 15 28 356 26 340 1.11e-25 106
Msa0060410 AT1G33811.1 26.486 370 232 11 7 361 4 348 2.17e-25 106
Msa0060410 AT3G04290.1 29.775 356 190 14 36 369 29 346 2.66e-25 105
Msa0060410 AT5G03980.1 25.978 358 198 12 13 361 7 306 3.76e-25 104
Msa0060410 AT1G54030.1 29.085 306 162 9 60 358 80 337 4.68e-25 105
Msa0060410 AT1G71691.2 26.611 357 226 10 24 371 41 370 6.11e-25 105
Msa0060410 AT2G31540.1 27.596 366 208 15 28 370 27 358 6.78e-25 104
Msa0060410 AT4G28780.1 28.000 350 204 11 36 369 31 348 1.62e-24 103
Msa0060410 AT1G75930.1 29.492 295 179 9 28 309 21 299 2.31e-24 102
Msa0060410 AT1G54000.1 26.133 375 233 12 12 378 12 350 3.03e-24 103
Msa0060410 AT1G73610.1 28.116 345 199 11 31 365 30 335 4.20e-24 102
Msa0060410 AT2G19060.1 28.011 357 195 14 35 373 29 341 4.82e-24 102
Msa0060410 AT2G19050.1 27.841 352 200 13 35 373 30 340 5.11e-24 102
Msa0060410 AT1G75890.2 27.147 361 219 14 17 361 25 357 7.86e-24 101
Msa0060410 AT1G53990.1 28.571 343 206 10 36 368 35 348 8.78e-24 101
Msa0060410 AT5G45960.1 28.028 289 184 12 36 312 47 323 9.31e-24 101
Msa0060410 AT1G75890.3 27.147 361 219 14 17 361 54 386 1.14e-23 101
Msa0060410 AT5G18430.1 26.064 376 225 12 10 368 7 346 1.44e-23 100
Msa0060410 AT5G33370.1 28.291 357 194 14 36 369 30 347 2.26e-23 100
Msa0060410 AT1G71250.1 25.661 378 236 13 9 374 15 359 2.57e-23 100
Msa0060410 AT3G43550.1 28.231 294 185 9 16 300 10 286 6.91e-23 97.8
Msa0060410 AT1G54020.2 26.415 371 226 11 15 378 12 342 8.31e-23 99.0
Msa0060410 AT1G54010.1 26.632 383 233 13 8 378 4 350 1.03e-22 99.0
Msa0060410 AT1G23500.1 28.382 377 214 16 9 368 2 339 1.16e-22 98.2
Msa0060410 AT1G75890.1 26.486 370 223 14 17 361 25 370 1.41e-22 98.2
Msa0060410 AT2G40250.1 27.241 290 185 10 36 312 36 312 1.47e-22 98.2
Msa0060410 AT5G37690.1 25.469 373 226 13 10 365 1 338 2.28e-22 97.4
Msa0060410 AT3G14820.1 25.588 340 215 10 35 365 31 341 2.63e-22 97.1
Msa0060410 AT5G15720.3 25.574 305 195 8 62 361 33 310 4.29e-22 96.3
Msa0060410 AT1G53940.1 30.645 310 179 9 11 300 4 297 5.53e-22 95.5
Msa0060410 AT2G03980.2 27.485 342 198 13 33 358 40 347 7.41e-22 96.3
Msa0060410 AT2G03980.3 27.485 342 198 13 33 358 40 347 7.41e-22 96.3
Msa0060410 AT2G03980.1 27.485 342 198 13 33 358 40 347 7.41e-22 96.3
Msa0060410 AT2G03980.4 27.485 342 198 13 33 358 40 347 7.41e-22 96.3
Msa0060410 AT5G15720.2 27.174 276 179 7 35 300 29 292 8.30e-22 95.1
Msa0060410 AT1G71691.3 27.273 286 184 8 24 300 41 311 1.12e-21 94.7
Msa0060410 AT3G43570.1 25.348 359 202 11 16 365 10 311 1.62e-21 94.4
Msa0060410 AT5G03610.1 27.083 336 201 15 37 362 44 345 1.86e-21 94.7
Msa0060410 AT2G24560.2 30.508 295 163 13 28 302 26 298 4.00e-21 93.2
Msa0060410 AT1G20135.1 25.410 366 213 12 13 362 6 327 9.59e-21 92.4
Msa0060410 AT2G19010.1 25.496 353 207 11 35 373 29 339 1.30e-20 92.4
Msa0060410 AT1G74460.1 28.319 339 197 14 38 361 25 332 1.39e-20 92.4
Msa0060410 AT2G19010.2 25.496 353 207 11 35 373 59 369 1.98e-20 92.0
Msa0060410 AT1G28600.2 34.091 220 119 8 1 210 1 204 4.02e-20 88.6
Msa0060410 AT1G28610.1 34.272 213 114 8 1 203 1 197 7.30e-20 88.6
Msa0060410 AT2G04020.1 31.441 229 136 9 33 252 40 256 1.60e-19 87.8
Msa0060410 AT2G04020.2 32.075 212 125 7 33 237 40 239 3.44e-19 87.8
Msa0060410 AT2G19050.2 28.517 263 156 8 35 287 30 270 6.20e-19 86.3
Msa0060410 AT1G75920.2 25.654 382 223 15 6 368 2 341 2.38e-18 85.9
Msa0060410 AT1G75910.1 25.661 378 213 16 12 365 1 334 5.88e-18 84.7
Msa0060410 AT5G37690.2 24.661 369 226 14 10 365 1 330 7.18e-18 84.3
Msa0060410 AT5G41890.1 25.706 354 213 15 38 368 33 359 2.34e-17 83.2
Msa0060410 AT5G55050.1 28.492 358 197 16 34 367 37 359 2.52e-17 83.2
Msa0060410 AT3G09930.2 24.551 334 213 12 37 362 40 342 3.29e-17 82.4
Msa0060410 AT3G09930.1 24.551 334 213 12 37 362 40 342 3.29e-17 82.4
Msa0060410 AT4G30140.1 27.143 350 203 12 35 373 32 340 4.07e-17 82.0
Msa0060410 AT1G71691.1 24.662 296 192 9 80 371 1 269 1.34e-16 79.7
Msa0060410 AT2G31550.1 28.000 175 106 6 201 370 58 217 9.19e-16 76.3
Msa0060410 AT5G03600.1 24.096 332 212 10 35 362 13 308 1.08e-15 77.8
Msa0060410 AT5G03600.2 24.096 332 212 10 35 362 48 343 1.48e-15 77.8
Msa0060410 AT1G54030.2 27.642 246 139 7 60 299 80 292 7.08e-15 75.1
Msa0060410 AT1G75920.1 25.385 390 216 16 15 368 1 351 8.57e-15 75.5
Msa0060410 AT5G33370.2 27.778 288 158 12 36 300 30 290 8.73e-15 75.1
Msa0060410 AT1G54020.1 24.823 282 170 8 100 378 14 256 4.14e-14 72.4
Msa0060410 AT1G54020.5 24.823 282 170 8 100 378 14 256 4.14e-14 72.4
Msa0060410 AT1G54020.3 24.823 282 170 8 100 378 14 256 4.14e-14 72.4
Msa0060410 AT1G54020.4 27.273 220 137 8 164 378 6 207 2.43e-13 69.3
Msa0060410 AT1G75920.4 24.615 325 190 13 60 368 28 313 6.02e-13 69.3
Msa0060410 AT4G16233.1 31.746 126 75 1 247 372 4 118 7.47e-13 65.9

Find 78 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGTACCATTTATGTTTA+TGG 0.138517 1_2:+18167077 None:intergenic
TGGATGTGTACCTTTAATTT+TGG 0.167825 1_2:-18167545 Msa0060410:CDS
CAATTCTTTGTAGCAAATAT+TGG 0.178924 1_2:+18172911 None:intergenic
TATAAAATTCTTTACTATAT+CGG 0.215235 1_2:+18167803 None:intergenic
ACCAATATCAAATGTGTATA+AGG 0.220968 1_2:+18167890 None:intergenic
AACCATCTACTAGAATAATA+TGG 0.227325 1_2:-18167032 Msa0060410:CDS
ATTTAGGGGCAAGGTCATTT+TGG 0.232450 1_2:-18167588 Msa0060410:CDS
TTTGGAATAATAATCTTCTT+TGG 0.255011 1_2:+18167914 None:intergenic
ATCTAGAACATATACAATTT+AGG 0.266079 1_2:-18167604 Msa0060410:intron
TACTGAACCTGAAGGGAAAA+TGG 0.271054 1_2:+18168134 None:intergenic
AATTCTTTGTAGCAAATATT+GGG 0.277876 1_2:+18172912 None:intergenic
GGAAAATTGGCCAAAATTAA+AGG 0.278464 1_2:+18167535 None:intergenic
CTTTATAGCAGATGGAAAAT+TGG 0.280511 1_2:+18167522 None:intergenic
TTGGAATAATAATCTTCTTT+GGG 0.286703 1_2:+18167915 None:intergenic
TCCCATATTATTCTAGTAGA+TGG 0.294746 1_2:+18167030 None:intergenic
CGAATCATTCTTGATTTCAT+AGG 0.296923 1_2:-18172755 Msa0060410:intron
TACCTAAAACAAGGTTCATT+AGG 0.300155 1_2:-18168091 Msa0060410:CDS
GTGCTTCATCATAAAATTCA+TGG 0.303697 1_2:-18173002 Msa0060410:exon
ATCCTCCCATTCCACTAAAT+AGG 0.303807 1_2:-18166939 None:intergenic
GCCTTATACACATTTGATAT+TGG 0.309552 1_2:-18167891 Msa0060410:CDS
AGTGCATATCTTGATTCTCT+TGG 0.329038 1_2:-18168248 Msa0060410:CDS
TCTAGAACATATACAATTTA+GGG 0.329938 1_2:-18167603 Msa0060410:intron
CTGTAACATGCCCTATTTAG+TGG 0.330204 1_2:+18166928 None:intergenic
GGAGCAACCATAAACATAAA+TGG 0.333844 1_2:-18167084 Msa0060410:CDS
GTCTTTGATCAAATCTCTAC+TGG 0.362400 1_2:-18166973 Msa0060410:CDS
ATCAAGATATGCACTTAGAT+AGG 0.372608 1_2:+18168256 None:intergenic
ATCAAATGTGTATAAGGCTT+TGG 0.373582 1_2:+18167896 None:intergenic
ATAAAATTCTTTACTATATC+GGG 0.374442 1_2:+18167804 None:intergenic
AAACTCTGATACTGGTGGTT+TGG 0.401156 1_2:-18172855 Msa0060410:CDS
ACCTAAAACAAGGTTCATTA+GGG 0.406556 1_2:-18168090 Msa0060410:CDS
CGAGCACTGCCGTTACCATA+TGG 0.418623 1_2:-18172821 Msa0060410:CDS
ATACATAACACTGGACCAAT+TGG 0.419424 1_2:-18167565 Msa0060410:CDS
ATATTTCAATTTAAAGTTGA+AGG 0.433727 1_2:-18167458 Msa0060410:CDS
GTGCATATCTTGATTCTCTT+GGG 0.440070 1_2:-18168247 Msa0060410:CDS
ACCATCTACTAGAATAATAT+GGG 0.442115 1_2:-18167031 Msa0060410:CDS
GGTCAAAATGATCTTACTGC+TGG 0.466959 1_2:-18167870 Msa0060410:CDS
ACAAGGTTCATTAGGGATCA+AGG 0.468253 1_2:-18168083 Msa0060410:intron
CATGCCCTATTTAGTGGAAT+GGG 0.472312 1_2:+18166934 None:intergenic
ATTAAAGGTACACATCCAAT+TGG 0.476146 1_2:+18167550 None:intergenic
AAGCCCTAGCTCATCTTCGC+AGG 0.481072 1_2:-18167435 Msa0060410:CDS
GGTGCTTCAAACTCTGATAC+TGG 0.485062 1_2:-18172863 Msa0060410:CDS
ACATGCCCTATTTAGTGGAA+TGG 0.489175 1_2:+18166933 None:intergenic
AATGGTACAAACACTGTTGT+GGG 0.499739 1_2:-18167066 Msa0060410:CDS
TACAACTATAACATTAGTGC+TGG 0.500660 1_2:-18167111 Msa0060410:CDS
CTAGGTATGATATTACTAGT+AGG 0.500699 1_2:+18168170 None:intergenic
GGTGCAAACTTTGCAACAGC+AGG 0.502492 1_2:-18168209 Msa0060410:CDS
TAACTATCCTTTATAGCAGA+TGG 0.504462 1_2:+18167514 None:intergenic
CTAGTGGCTTGTTGTGGCAA+TGG 0.508528 1_2:-18167141 Msa0060410:CDS
AAATGGTACAAACACTGTTG+TGG 0.519598 1_2:-18167067 Msa0060410:CDS
GATCCCTGCGAAGATGAGCT+AGG 0.520958 1_2:+18167431 None:intergenic
TCTGCTATAAAGGATAGTTA+TGG 0.535982 1_2:-18167511 Msa0060410:CDS
TATAACATTAGTGCTGGCTG+TGG 0.541420 1_2:-18167105 Msa0060410:CDS
TCAAGATATGCACTTAGATA+GGG 0.543210 1_2:+18168257 None:intergenic
ATTCTTTGTAGCAAATATTG+GGG 0.543366 1_2:+18172913 None:intergenic
TGGTAACGGCAGTGCTCGAA+AGG 0.543397 1_2:+18172826 None:intergenic
TGGAATAATAATCTTCTTTG+GGG 0.555591 1_2:+18167916 None:intergenic
CTTGGGTCAAACTTCACACA+TGG 0.560034 1_2:-18168230 Msa0060410:CDS
ACATATACAATTTAGGGGCA+AGG 0.581070 1_2:-18167597 Msa0060410:CDS
AGGGTTTGAACTTCCACTAG+TGG 0.582113 1_2:-18167157 Msa0060410:CDS
ATCCCTGCGAAGATGAGCTA+GGG 0.588235 1_2:+18167432 None:intergenic
CTTCCACTAGTGGCTTGTTG+TGG 0.588534 1_2:-18167147 Msa0060410:CDS
ACATATGTGATTGCTGCTAG+TGG 0.594418 1_2:+18167406 None:intergenic
AAAGTCTCACCATATGGTAA+CGG 0.600481 1_2:+18172812 None:intergenic
TTGCCACAACAAGCCACTAG+TGG 0.603337 1_2:+18167144 None:intergenic
AAGATTTCATACCTAAAACA+AGG 0.612054 1_2:-18168100 Msa0060410:CDS
AGCCCTAGCTCATCTTCGCA+GGG 0.617389 1_2:-18167434 Msa0060410:CDS
GCCCTATTTAGTGGAATGGG+AGG 0.622277 1_2:+18166937 None:intergenic
GTGCAAACTTTGCAACAGCA+GGG 0.631688 1_2:-18168208 Msa0060410:CDS
TCTACTAGAATAATATGGGA+TGG 0.641361 1_2:-18167027 Msa0060410:CDS
GCTTCAAACTCTGATACTGG+TGG 0.645496 1_2:-18172860 Msa0060410:CDS
TTCTTTGTAGCAAATATTGG+GGG 0.645637 1_2:+18172914 None:intergenic
ACTAGTAATATCATACCTAG+TGG 0.650422 1_2:-18168167 Msa0060410:CDS
AATGGACTAAACATTCCACT+AGG 0.660611 1_2:+18168152 None:intergenic
TTGAATGTACTGAACCTGAA+GGG 0.661770 1_2:+18168127 None:intergenic
GTGGCTTGTTGTGGCAATGG+AGG 0.663762 1_2:-18167138 Msa0060410:CDS
ATTGAATGTACTGAACCTGA+AGG 0.669376 1_2:+18168126 None:intergenic
CTAGAACATATACAATTTAG+GGG 0.696032 1_2:-18167602 Msa0060410:intron
GGATGGTACTCATTACACAG+AGG 0.801423 1_2:-18167010 Msa0060410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATTAAAAATAATA+AGG + chr1_2:18169653-18169672 None:intergenic 0.0%
!!! AAGAATAATATTTTTTTTTG+GGG + chr1_2:18167623-18167642 None:intergenic 10.0%
!!! CAAGAATAATATTTTTTTTT+GGG + chr1_2:18167624-18167643 None:intergenic 10.0%
!!! TCAAGAATAATATTTTTTTT+TGG + chr1_2:18167625-18167644 None:intergenic 10.0%
!!! ATAATTTTTATTGTTGAAAA+AGG + chr1_2:18167822-18167841 None:intergenic 10.0%
!! TTATTAATCTATTATTAAAC+TGG - chr1_2:18167921-18167940 Msa0060410:CDS 10.0%
!! ACCTAAAAAATTATAATTTA+TGG - chr1_2:18168137-18168156 Msa0060410:CDS 10.0%
!! CCTAAAAAATTATAATTTAT+GGG - chr1_2:18168138-18168157 Msa0060410:CDS 10.0%
!! TATATCTATACTATATATAA+AGG - chr1_2:18168884-18168903 Msa0060410:intron 10.0%
!!! TTACTTGTATTTAAAATTAA+GGG + chr1_2:18168961-18168980 None:intergenic 10.0%
!!! GTATTTTTTTTATGAAATTT+TGG + chr1_2:18169231-18169250 None:intergenic 10.0%
!!! TATAAGAGTATTAATTAATT+CGG - chr1_2:18169585-18169604 Msa0060410:intron 10.0%
!! TTTAATAAATGGTTTAAAAA+TGG - chr1_2:18169625-18169644 Msa0060410:intron 10.0%
!! ATTAATAAATAAGGATAATA+TGG + chr1_2:18169996-18170015 None:intergenic 10.0%
!! CCTAATAAAATTAATAAATA+AGG + chr1_2:18170928-18170947 None:intergenic 10.0%
!!! CCTTATTTATTAATTTTATT+AGG - chr1_2:18170002-18170021 Msa0060410:intron 10.0%
!! TAATTTAGAGAAAAATTATT+AGG - chr1_2:18170872-18170891 Msa0060410:intron 10.0%
!!! TTAGGTTTATTAATTTTATT+AGG + chr1_2:18170913-18170932 None:intergenic 10.0%
!!! CCTTATTTATTAATTTTATT+AGG + chr1_2:18170002-18170021 None:intergenic 10.0%
!! CCTAATAAAATTAATAAATA+AGG - chr1_2:18170928-18170947 Msa0060410:intron 10.0%
!! TTAAAATGAATTTAAATATG+AGG + chr1_2:18171415-18171434 None:intergenic 10.0%
!!! AATTATTTCTATATTTATGA+AGG - chr1_2:18171625-18171644 Msa0060410:intron 10.0%
!!! ATTATTTCTATATTTATGAA+GGG - chr1_2:18171626-18171645 Msa0060410:intron 10.0%
!! TATAAAATTCTTTACTATAT+CGG + chr1_2:18172155-18172174 None:intergenic 10.0%
!! TAGTAATATATATATAACAA+GGG + chr1_2:18172313-18172332 None:intergenic 10.0%
!! TTAGTAATATATATATAACA+AGG + chr1_2:18172314-18172333 None:intergenic 10.0%
!! AATATTATTCTTGAATTAGT+CGG - chr1_2:18167631-18167650 Msa0060410:intron 15.0%
!! TAGCTCAATATTTATTATTT+GGG + chr1_2:18167678-18167697 None:intergenic 15.0%
!! TACAAATAAATCTATCAATT+TGG + chr1_2:18167758-18167777 None:intergenic 15.0%
!! TAATCTCTAACAAAAAATTA+AGG + chr1_2:18168040-18168059 None:intergenic 15.0%
!!! CCCATAAATTATAATTTTTT+AGG + chr1_2:18168141-18168160 None:intergenic 15.0%
!! CATATAATATCATATGTATT+AGG + chr1_2:18168807-18168826 None:intergenic 15.0%
!!! TTTAAAATTAAGGGTATTTT+TGG + chr1_2:18168952-18168971 None:intergenic 15.0%
!!! GTTACTTGTATTTAAAATTA+AGG + chr1_2:18168962-18168981 None:intergenic 15.0%
!!! AAATTGTTTAAGAGTATAAT+TGG + chr1_2:18169134-18169153 None:intergenic 15.0%
!! TAATATGGATCTTTAATAAA+TGG - chr1_2:18169614-18169633 Msa0060410:intron 15.0%
!!! TATATTTTTGTTGAGATTTA+AGG + chr1_2:18169839-18169858 None:intergenic 15.0%
!! GATTTCAAACAATAATAATA+TGG - chr1_2:18170422-18170441 Msa0060410:intron 15.0%
!! AAATAAGGATAACAAATAAT+AGG - chr1_2:18170943-18170962 Msa0060410:intron 15.0%
!! AATAAGGATAACAAATAATA+GGG - chr1_2:18170944-18170963 Msa0060410:intron 15.0%
!!! TCAATTGATTTTATCTTTAT+TGG + chr1_2:18171204-18171223 None:intergenic 15.0%
!! AATATTTCATATGAATTTCA+GGG + chr1_2:18171515-18171534 None:intergenic 15.0%
!! TGAAATTAAGAAAGAAAAAA+AGG + chr1_2:18171982-18172001 None:intergenic 15.0%
!! ATAAAATTCTTTACTATATC+GGG + chr1_2:18172154-18172173 None:intergenic 15.0%
!!! ATATTTCAATTTAAAGTTGA+AGG - chr1_2:18172497-18172516 Msa0060410:intron 15.0%
!! AATTCTTTGTAGCAAATATT+GGG + chr1_2:18167046-18167065 None:intergenic 20.0%
!! TCATAGAAAATGAAATAGAA+AGG + chr1_2:18167245-18167264 None:intergenic 20.0%
!! AGCTCAATATTTATTATTTG+GGG + chr1_2:18167677-18167696 None:intergenic 20.0%
!! GTAGCTCAATATTTATTATT+TGG + chr1_2:18167679-18167698 None:intergenic 20.0%
!!! TTTTGCAACTAATTTTGTTT+GGG + chr1_2:18167702-18167721 None:intergenic 20.0%
!! TTGTATTCATTTGATACTTT+CGG - chr1_2:18167773-18167792 Msa0060410:intron 20.0%
!! ATAGTCATAGACAAATTAAA+TGG - chr1_2:18167850-18167869 Msa0060410:CDS 20.0%
!! AAACAGACGTATTAAATTTA+AGG + chr1_2:18168182-18168201 None:intergenic 20.0%
!! AAAAAATCCTTCTTTATAGT+TGG - chr1_2:18168205-18168224 Msa0060410:CDS 20.0%
!! TTGGACAATAAATAAAAGTT+TGG - chr1_2:18168667-18168686 Msa0060410:intron 20.0%
!! TAACGTTTGAAAATTATGAA+CGG + chr1_2:18169253-18169272 None:intergenic 20.0%
!! TTAATTCGGTTAATCTAATA+TGG - chr1_2:18169599-18169618 Msa0060410:intron 20.0%
!! CTATTATGATTATTATTAGG+CGG + chr1_2:18169769-18169788 None:intergenic 20.0%
!! CACCTATTATGATTATTATT+AGG + chr1_2:18169772-18169791 None:intergenic 20.0%
!! TAATAATTAGGTTAGAGATT+CGG - chr1_2:18169861-18169880 Msa0060410:intron 20.0%
!! TTATTTAATATGTCTAATCC+GGG + chr1_2:18170526-18170545 None:intergenic 20.0%
!! CTTATTTAATATGTCTAATC+CGG + chr1_2:18170525-18170544 None:intergenic 20.0%
!!! CATTTTAGAGGAAAATTATT+AGG + chr1_2:18170043-18170062 None:intergenic 20.0%
!!! TGTAAACGTATTTTTTTTTG+TGG + chr1_2:18170303-18170322 None:intergenic 20.0%
!! CTTATTTAATATGTCTAATC+CGG - chr1_2:18170525-18170544 Msa0060410:intron 20.0%
!! TTATTTAATATGTCTAATCC+GGG - chr1_2:18170526-18170545 Msa0060410:intron 20.0%
!! CTATTATGATTATTATTAGG+CGG + chr1_2:18169769-18169788 None:intergenic 20.0%
!! CACCTATTATGATTATTATT+AGG + chr1_2:18169772-18169791 None:intergenic 20.0%
!!! TATATTTTTGTTGAGATCTA+AGG + chr1_2:18171107-18171126 None:intergenic 20.0%
!! GAATATTTCATATGAATTTC+AGG + chr1_2:18171516-18171535 None:intergenic 20.0%
!! TTGGAATAATAATCTTCTTT+GGG + chr1_2:18172043-18172062 None:intergenic 20.0%
!!! TTTGGAATAATAATCTTCTT+TGG + chr1_2:18172044-18172063 None:intergenic 20.0%
!!! GAATTTTATAGAGAATATCA+AGG - chr1_2:18172165-18172184 Msa0060410:intron 20.0%
!!! ATCTAGAACATATACAATTT+AGG - chr1_2:18172351-18172370 Msa0060410:intron 20.0%
!!! TCTAGAACATATACAATTTA+GGG - chr1_2:18172352-18172371 Msa0060410:intron 20.0%
!! TTCCAAAATCCAAAAAAATA+CGG - chr1_2:18172600-18172619 Msa0060410:intron 20.0%
!! AAAATAGGATCAATTTGATT+TGG + chr1_2:18172630-18172649 None:intergenic 20.0%
!! TTAAATCTTCATTAACATGT+AGG - chr1_2:18172778-18172797 Msa0060410:CDS 20.0%
!! TAAATCTTCATTAACATGTA+GGG - chr1_2:18172779-18172798 Msa0060410:CDS 20.0%
! ATTCTTTGTAGCAAATATTG+GGG + chr1_2:18167045-18167064 None:intergenic 25.0%
! CAATTCTTTGTAGCAAATAT+TGG + chr1_2:18167047-18167066 None:intergenic 25.0%
!!! ACTTTTTTCAATAGATCATC+TGG - chr1_2:18167161-18167180 Msa0060410:intron 25.0%
!! TTTATTGTGTTGAACACTTT+TGG - chr1_2:18167278-18167297 Msa0060410:intron 25.0%
!!! TTTGCAACTAATTTTGTTTG+GGG + chr1_2:18167701-18167720 None:intergenic 25.0%
!! CTTTTGCAACTAATTTTGTT+TGG + chr1_2:18167703-18167722 None:intergenic 25.0%
!!! AATCGCTATTTTAAAACGTT+GGG + chr1_2:18167982-18168001 None:intergenic 25.0%
!!! AAATCGCTATTTTAAAACGT+TGG + chr1_2:18167983-18168002 None:intergenic 25.0%
! AGTTATAAGTTAACTCATGT+AGG - chr1_2:18168286-18168305 Msa0060410:intron 25.0%
!!! GTATTTTGATCAGTTTGTAT+AGG - chr1_2:18168382-18168401 Msa0060410:intron 25.0%
!!! GTGCGATTTTTAAGAAAATA+GGG + chr1_2:18168589-18168608 None:intergenic 25.0%
! TCGTGTATTGAATATTGATA+AGG + chr1_2:18168764-18168783 None:intergenic 25.0%
! GTGGTTTAACTCAAAAATAA+TGG + chr1_2:18168832-18168851 None:intergenic 25.0%
!! AGTCTAACAATTCTTTTCAA+AGG - chr1_2:18168856-18168875 Msa0060410:intron 25.0%
! ATAATGAATCTCATACAACT+TGG - chr1_2:18169425-18169444 Msa0060410:intron 25.0%
! ATGTTTCTCTCTAAATCTAA+TGG - chr1_2:18169534-18169553 Msa0060410:intron 25.0%
! AATACTCTTATAGTAGTGTA+TGG + chr1_2:18169577-18169596 None:intergenic 25.0%
! CGCCTAATAATAATCATAAT+AGG - chr1_2:18169767-18169786 Msa0060410:intron 25.0%
!! CGGATTAGACATATTAAATA+AGG - chr1_2:18169891-18169910 Msa0060410:intron 25.0%
!!! AAACGTATTTTTTTTTGTGG+TGG + chr1_2:18170300-18170319 None:intergenic 25.0%
!! ATCTTTTAACCAAGAAAACA+CGG + chr1_2:18170586-18170605 None:intergenic 25.0%
!! CGGATTAGACATATTAAATA+AGG + chr1_2:18169891-18169910 None:intergenic 25.0%
!! ATCTTTTAACCAAGAAAACA+CGG - chr1_2:18170586-18170605 Msa0060410:intron 25.0%
!!! TATTTTAGAGGGAATTTGTT+AGG - chr1_2:18170824-18170843 Msa0060410:intron 25.0%
! TTTCTCTAAATTACTGCATT+AGG + chr1_2:18170865-18170884 None:intergenic 25.0%
! CGCCTAATAATAATCATAAT+AGG - chr1_2:18169767-18169786 Msa0060410:intron 25.0%
! AAGATTTCATACCTAAAACA+AGG - chr1_2:18171855-18171874 Msa0060410:intron 25.0%
! AATTTCAAAATTTACTTGCC+AGG - chr1_2:18171995-18172014 Msa0060410:intron 25.0%
! TGGAATAATAATCTTCTTTG+GGG + chr1_2:18172042-18172061 None:intergenic 25.0%
! ACCAATATCAAATGTGTATA+AGG + chr1_2:18172068-18172087 None:intergenic 25.0%
! TAGATAAAGTTAGCAGAAAA+GGG + chr1_2:18172201-18172220 None:intergenic 25.0%
! ATTACTAAAATGCAACTTAC+TGG - chr1_2:18172326-18172345 Msa0060410:intron 25.0%
! CTAGAACATATACAATTTAG+GGG - chr1_2:18172353-18172372 Msa0060410:intron 25.0%
!!! ATTGATCCTATTTTCAAGTT+AGG - chr1_2:18172636-18172655 Msa0060410:intron 25.0%
!!! TTGATCCTATTTTCAAGTTA+GGG - chr1_2:18172637-18172656 Msa0060410:intron 25.0%
! ATATACCCTAACTTGAAAAT+AGG + chr1_2:18172645-18172664 None:intergenic 25.0%
! CAAGTTAGGGTATATATATT+TGG - chr1_2:18172650-18172669 Msa0060410:intron 25.0%
! GTTTGTACCATTTATGTTTA+TGG + chr1_2:18172881-18172900 None:intergenic 25.0%
! AACCATCTACTAGAATAATA+TGG - chr1_2:18172923-18172942 Msa0060410:CDS 25.0%
! ACCATCTACTAGAATAATAT+GGG - chr1_2:18172924-18172943 Msa0060410:CDS 25.0%
GTGCTTCATCATAAAATTCA+TGG - chr1_2:18166953-18166972 Msa0060410:CDS 30.0%
TTCTTTGTAGCAAATATTGG+GGG + chr1_2:18167044-18167063 None:intergenic 30.0%
!!! TTTCCTGCCATTTTTAACTT+CGG - chr1_2:18167071-18167090 Msa0060410:CDS 30.0%
TTGAAAAAAGTCTCACCATA+TGG + chr1_2:18167152-18167171 None:intergenic 30.0%
CGAATCATTCTTGATTTCAT+AGG - chr1_2:18167200-18167219 Msa0060410:intron 30.0%
TCTAAATCTGATTATCTCCA+CGG + chr1_2:18167404-18167423 None:intergenic 30.0%
AGTCGGTATGTATTTATATC+CGG - chr1_2:18167648-18167667 Msa0060410:intron 30.0%
! TATTTATTATTTGGGGTAGC+CGG + chr1_2:18167670-18167689 None:intergenic 30.0%
TTTAAGAAAATAGGGAGTGA+AGG + chr1_2:18168581-18168600 None:intergenic 30.0%
!! CGTGCGATTTTTAAGAAAAT+AGG + chr1_2:18168590-18168609 None:intergenic 30.0%
TTTCTTAAAAATCGCACGTT+CGG - chr1_2:18168592-18168611 Msa0060410:intron 30.0%
AAGAATTGTTAGACTTAACG+TGG + chr1_2:18168851-18168870 None:intergenic 30.0%
CAATAAAAAGAGCAGAAAGA+CGG - chr1_2:18169276-18169295 Msa0060410:intron 30.0%
AATAAAAAGAGCAGAAAGAC+GGG - chr1_2:18169277-18169296 Msa0060410:intron 30.0%
! GTTTTGTCGTATGAATATGA+AGG + chr1_2:18169344-18169363 None:intergenic 30.0%
ATGTTGCTCTCTAAATCTAA+TGG - chr1_2:18169467-18169486 Msa0060410:intron 30.0%
TCCACAATTGTTATACAACT+TGG - chr1_2:18169492-18169511 Msa0060410:intron 30.0%
TCCAAGTTGTATAACAATTG+TGG + chr1_2:18169496-18169515 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG - chr1_2:18170255-18170274 Msa0060410:intron 30.0%
TAATATTTCTCCTCACTGAT+GGG + chr1_2:18170794-18170813 None:intergenic 30.0%
ATCAGTGAGGAGAAATATTA+GGG - chr1_2:18170794-18170813 Msa0060410:intron 30.0%
!!! GAGATGTGTTTTGATATTCA+GGG + chr1_2:18171459-18171478 None:intergenic 30.0%
!!! AGAGATGTGTTTTGATATTC+AGG + chr1_2:18171460-18171479 None:intergenic 30.0%
ATTTCATATGAATTTCAGGG+TGG + chr1_2:18171512-18171531 None:intergenic 30.0%
!! TGTTATTGGTTTGCATTCTT+TGG + chr1_2:18171553-18171572 None:intergenic 30.0%
CTATATAGTGTGATGTAGAT+GGG + chr1_2:18171578-18171597 None:intergenic 30.0%
TCAAGATATGCACTTAGATA+GGG + chr1_2:18171701-18171720 None:intergenic 30.0%
ATCAAGATATGCACTTAGAT+AGG + chr1_2:18171702-18171721 None:intergenic 30.0%
CTAGGTATGATATTACTAGT+AGG + chr1_2:18171788-18171807 None:intergenic 30.0%
ACTAGTAATATCATACCTAG+TGG - chr1_2:18171788-18171807 Msa0060410:intron 30.0%
TACCTAAAACAAGGTTCATT+AGG - chr1_2:18171864-18171883 Msa0060410:intron 30.0%
ACCTAAAACAAGGTTCATTA+GGG - chr1_2:18171865-18171884 Msa0060410:intron 30.0%
TTTGTGTCCTTAATTAAGCT+CGG + chr1_2:18171955-18171974 None:intergenic 30.0%
ATCAAATGTGTATAAGGCTT+TGG + chr1_2:18172062-18172081 None:intergenic 30.0%
GCCTTATACACATTTGATAT+TGG - chr1_2:18172064-18172083 Msa0060410:intron 30.0%
GTAGATAAAGTTAGCAGAAA+AGG + chr1_2:18172202-18172221 None:intergenic 30.0%
! TCATTTTGGATACATAACAC+TGG - chr1_2:18172381-18172400 Msa0060410:intron 30.0%
! ATTAAAGGTACACATCCAAT+TGG + chr1_2:18172408-18172427 None:intergenic 30.0%
!! TGGATGTGTACCTTTAATTT+TGG - chr1_2:18172410-18172429 Msa0060410:intron 30.0%
GGAAAATTGGCCAAAATTAA+AGG + chr1_2:18172423-18172442 None:intergenic 30.0%
CTTTATAGCAGATGGAAAAT+TGG + chr1_2:18172436-18172455 None:intergenic 30.0%
! CAATTTTCCATCTGCTATAA+AGG - chr1_2:18172434-18172453 Msa0060410:intron 30.0%
TAACTATCCTTTATAGCAGA+TGG + chr1_2:18172444-18172463 None:intergenic 30.0%
TCTGCTATAAAGGATAGTTA+TGG - chr1_2:18172444-18172463 Msa0060410:intron 30.0%
!!! CACCGTATTTTTTTGGATTT+TGG + chr1_2:18172605-18172624 None:intergenic 30.0%
GGGTATATATATTTGGATTG+CGG - chr1_2:18172657-18172676 Msa0060410:intron 30.0%
!! ATGTTGACTCGCTATAATTA+TGG - chr1_2:18172723-18172742 Msa0060410:intron 30.0%
TACAACTATAACATTAGTGC+TGG - chr1_2:18172844-18172863 Msa0060410:CDS 30.0%
TCCCATATTATTCTAGTAGA+TGG + chr1_2:18172928-18172947 None:intergenic 30.0%
TCTACTAGAATAATATGGGA+TGG - chr1_2:18172928-18172947 Msa0060410:CDS 30.0%
!! TGAAGCACCGAAGTTAAAAA+TGG + chr1_2:18167081-18167100 None:intergenic 35.0%
AAAGTCTCACCATATGGTAA+CGG + chr1_2:18167146-18167165 None:intergenic 35.0%
! TCATCTGGAAGATTTTCTGA+TGG - chr1_2:18167176-18167195 Msa0060410:intron 35.0%
!! TGTTGAACACTTTTGGAAAG+TGG - chr1_2:18167285-18167304 Msa0060410:intron 35.0%
!!! ATTTTTTTTTGGGGTAGCCA+AGG + chr1_2:18167614-18167633 None:intergenic 35.0%
!! AAACTGGCAGTTGATGAAAT+TGG - chr1_2:18167937-18167956 Msa0060410:CDS 35.0%
!! AACTGGCAGTTGATGAAATT+GGG - chr1_2:18167938-18167957 Msa0060410:CDS 35.0%
CTCGCAAAAAATTTATGCAG+GGG + chr1_2:18168231-18168250 None:intergenic 35.0%
GCTCGCAAAAAATTTATGCA+GGG + chr1_2:18168232-18168251 None:intergenic 35.0%
AGCTCGCAAAAAATTTATGC+AGG + chr1_2:18168233-18168252 None:intergenic 35.0%
GGATTCTCGAACAAAAGAAA+TGG + chr1_2:18168442-18168461 None:intergenic 35.0%
GACTTGAATCTCATACAACT+TGG + chr1_2:18169393-18169412 None:intergenic 35.0%
AACCCAAAAATGTGCTGAAA+GGG + chr1_2:18168917-18168936 None:intergenic 35.0%
TCTACTACTAGCGAAAAGAT+GGG + chr1_2:18169312-18169331 None:intergenic 35.0%
ATCTACTACTAGCGAAAAGA+TGG + chr1_2:18169313-18169332 None:intergenic 35.0%
ACCAGTGAGGAGAAATATTA+GGG + chr1_2:18170073-18170092 None:intergenic 35.0%
TATACAAACGATGACACAAC+AGG + chr1_2:18170754-18170773 None:intergenic 35.0%
!!! GTATTTTTTTTTGTGGTGGC+CGG + chr1_2:18170296-18170315 None:intergenic 35.0%
CCGAGTTTGCATAGAAATTA+GGG + chr1_2:18170335-18170354 None:intergenic 35.0%
CCCTAATTTCTATGCAAACT+CGG - chr1_2:18170332-18170351 Msa0060410:intron 35.0%
CCGAGTTTGCATGAAAATTA+GGG + chr1_2:18170656-18170675 None:intergenic 35.0%
! CCCTAATTTTCATGCAAACT+CGG - chr1_2:18170358-18170377 Msa0060410:intron 35.0%
AACCAAGAAAACACGGTTTA+GGG + chr1_2:18170593-18170612 None:intergenic 35.0%
TAACCAAGAAAACACGGTTT+AGG + chr1_2:18170592-18170611 None:intergenic 35.0%
AAACAACTAGATTAGAGACC+CGG + chr1_2:18170563-18170582 None:intergenic 35.0%
TAACCAAGAAAACACGGTTT+AGG - chr1_2:18170592-18170611 Msa0060410:intron 35.0%
AACCAAGAAAACACGGTTTA+GGG - chr1_2:18170593-18170612 Msa0060410:intron 35.0%
TATATATAGCCGAGTTTGCA+TGG - chr1_2:18170621-18170640 Msa0060410:intron 35.0%
! CCCTAATTTTCATGCAAACT+CGG + chr1_2:18170358-18170377 None:intergenic 35.0%
CCGAGTTTGCATGAAAATTA+GGG - chr1_2:18170656-18170675 Msa0060410:intron 35.0%
AAACGATGACACAACATGAT+AGG - chr1_2:18170759-18170778 Msa0060410:intron 35.0%
CTAATATTTCTCCTCACTGA+TGG + chr1_2:18170795-18170814 None:intergenic 35.0%
CATCAGTGAGGAGAAATATT+AGG - chr1_2:18170793-18170812 Msa0060410:intron 35.0%
!! TAGGGATTGCTGTATTTTAG+AGG - chr1_2:18170812-18170831 Msa0060410:intron 35.0%
!! AGGGATTGCTGTATTTTAGA+GGG - chr1_2:18170813-18170832 Msa0060410:intron 35.0%
!!! ATGTGTTTTGATATTCAGGG+TGG + chr1_2:18171456-18171475 None:intergenic 35.0%
CAAAACACATCTCTCTATGT+CGG - chr1_2:18171466-18171485 Msa0060410:intron 35.0%
!! GATGTAGATGGGTTTGTTAT+TGG + chr1_2:18171567-18171586 None:intergenic 35.0%
CCTATATAGTGTGATGTAGA+TGG + chr1_2:18171579-18171598 None:intergenic 35.0%
CCATCTACATCACACTATAT+AGG - chr1_2:18171576-18171595 Msa0060410:intron 35.0%
AGTGCATATCTTGATTCTCT+TGG - chr1_2:18171707-18171726 Msa0060410:intron 35.0%
GTGCATATCTTGATTCTCTT+GGG - chr1_2:18171708-18171727 Msa0060410:intron 35.0%
!! AATGGACTAAACATTCCACT+AGG + chr1_2:18171806-18171825 None:intergenic 35.0%
TTGAATGTACTGAACCTGAA+GGG + chr1_2:18171831-18171850 None:intergenic 35.0%
ATTGAATGTACTGAACCTGA+AGG + chr1_2:18171832-18171851 None:intergenic 35.0%
!!! TCCCTAATGAACCTTGTTTT+AGG + chr1_2:18171869-18171888 None:intergenic 35.0%
TGTGATTCCGAGCTTAATTA+AGG - chr1_2:18171945-18171964 Msa0060410:intron 35.0%
TTCAAAATTTACTTGCCAGG+AGG - chr1_2:18171998-18172017 Msa0060410:intron 35.0%
!!! GATCTTACTGCTGGATTTTT+TGG - chr1_2:18172094-18172113 Msa0060410:intron 35.0%
ACATATACAATTTAGGGGCA+AGG - chr1_2:18172358-18172377 Msa0060410:intron 35.0%
ATACATAACACTGGACCAAT+TGG - chr1_2:18172390-18172409 Msa0060410:intron 35.0%
!!! TTTTGGAAAAGAGAGTGCTT+TGG + chr1_2:18172588-18172607 None:intergenic 35.0%
!!! TTTGGCTCACCGTATTTTTT+TGG + chr1_2:18172612-18172631 None:intergenic 35.0%
GGAGCAACCATAAACATAAA+TGG - chr1_2:18172871-18172890 Msa0060410:CDS 35.0%
AAATGGTACAAACACTGTTG+TGG - chr1_2:18172888-18172907 Msa0060410:CDS 35.0%
AATGGTACAAACACTGTTGT+GGG - chr1_2:18172889-18172908 Msa0060410:CDS 35.0%
GTCTTTGATCAAATCTCTAC+TGG - chr1_2:18172982-18173001 Msa0060410:CDS 35.0%
AAACTCTGATACTGGTGGTT+TGG - chr1_2:18167100-18167119 Msa0060410:CDS 40.0%
CAGCATGCATCTACTATAAG+AGG + chr1_2:18167375-18167394 None:intergenic 40.0%
! TAGGAGCGAGCAATTTTTGT+TGG - chr1_2:18168401-18168420 Msa0060410:intron 40.0%
! AGGAGCGAGCAATTTTTGTT+GGG - chr1_2:18168402-18168421 Msa0060410:intron 40.0%
AGAAAATAGGGAGTGAAGGT+GGG + chr1_2:18168577-18168596 None:intergenic 40.0%
AAGAAAATAGGGAGTGAAGG+TGG + chr1_2:18168578-18168597 None:intergenic 40.0%
!!! GCGTCATCATTTTTTCACGT+TGG - chr1_2:18168648-18168667 Msa0060410:intron 40.0%
! TACCCCTTTCAGCACATTTT+TGG - chr1_2:18168911-18168930 Msa0060410:intron 40.0%
! ACCCCTTTCAGCACATTTTT+GGG - chr1_2:18168912-18168931 Msa0060410:intron 40.0%
ACCCAAAAATGTGCTGAAAG+GGG + chr1_2:18168916-18168935 None:intergenic 40.0%
CAACCCAAAAATGTGCTGAA+AGG + chr1_2:18168918-18168937 None:intergenic 40.0%
!!! CTTTCAGCACATTTTTGGGT+TGG - chr1_2:18168916-18168935 Msa0060410:intron 40.0%
GACAAAACATGATTGTGCGT+GGG - chr1_2:18169356-18169375 Msa0060410:intron 40.0%
ACAAAACATGATTGTGCGTG+GGG - chr1_2:18169357-18169376 Msa0060410:intron 40.0%
AGTGTATGGTGCAACAATTG+TGG + chr1_2:18169563-18169582 None:intergenic 40.0%
CTGCTGATATCTTTGTGTCT+TGG + chr1_2:18169795-18169814 None:intergenic 40.0%
CAAGACACAAAGATATCAGC+AGG - chr1_2:18169793-18169812 Msa0060410:intron 40.0%
! TAGGGATTGCAGCATTTTAG+AGG + chr1_2:18170055-18170074 None:intergenic 40.0%
TCCCTAATATTTCTCCTCAC+TGG - chr1_2:18170069-18170088 Msa0060410:intron 40.0%
CACCAGTGAGGAGAAATATT+AGG + chr1_2:18170074-18170093 None:intergenic 40.0%
AAACGATGACACAACAGGAT+AGG + chr1_2:18170108-18170127 None:intergenic 40.0%
CATAAAATATGCAAGGTCCG+CGG - chr1_2:18170262-18170281 Msa0060410:intron 40.0%
GCCGAGTTTGCATAGAAATT+AGG + chr1_2:18170336-18170355 None:intergenic 40.0%
GCCGAGTTTGCATGAAAATT+AGG + chr1_2:18170655-18170674 None:intergenic 40.0%
! AACCCTAAACCGTGTTTTCT+TGG - chr1_2:18170393-18170412 Msa0060410:intron 40.0%
! AACCCTAAACCGTGTTTTCT+TGG + chr1_2:18170393-18170412 None:intergenic 40.0%
CCCTAATTTCCATGCAAACT+CGG + chr1_2:18170633-18170652 None:intergenic 40.0%
CCGAGTTTGCATGGAAATTA+GGG - chr1_2:18170630-18170649 Msa0060410:intron 40.0%
GCCGAGTTTGCATGAAAATT+AGG - chr1_2:18170655-18170674 Msa0060410:intron 40.0%
CTGCTGATATCTTTGTGTCT+TGG + chr1_2:18169795-18169814 None:intergenic 40.0%
CAAGACACAAAGATATCAGC+AGG - chr1_2:18169793-18169812 Msa0060410:intron 40.0%
ACACTATATAGGAGCTCACA+TGG - chr1_2:18171587-18171606 Msa0060410:intron 40.0%
! GTTTAGTCCATTTTCCCTTC+AGG - chr1_2:18171814-18171833 Msa0060410:intron 40.0%
TACTGAACCTGAAGGGAAAA+TGG + chr1_2:18171824-18171843 None:intergenic 40.0%
ACAAGGTTCATTAGGGATCA+AGG - chr1_2:18171872-18171891 Msa0060410:intron 40.0%
AATGTTGCAAATACACCTCC+TGG + chr1_2:18172016-18172035 None:intergenic 40.0%
GGTCAAAATGATCTTACTGC+TGG - chr1_2:18172085-18172104 Msa0060410:intron 40.0%
! ATTTAGGGGCAAGGTCATTT+TGG - chr1_2:18172367-18172386 Msa0060410:intron 40.0%
ACATATGTGATTGCTGCTAG+TGG + chr1_2:18172552-18172571 None:intergenic 40.0%
!! TATAACATTAGTGCTGGCTG+TGG - chr1_2:18172850-18172869 Msa0060410:CDS 40.0%
GCACCGAAGTTAAAAATGGC+AGG + chr1_2:18167077-18167096 None:intergenic 45.0%
GGTGCTTCAAACTCTGATAC+TGG - chr1_2:18167092-18167111 Msa0060410:CDS 45.0%
GCTTCAAACTCTGATACTGG+TGG - chr1_2:18167095-18167114 Msa0060410:CDS 45.0%
ACATGACTTAAGTCAGCGCA+GGG - chr1_2:18167561-18167580 Msa0060410:CDS 45.0%
ACATGAGTTAACTCACGCTG+AGG + chr1_2:18168265-18168284 None:intergenic 45.0%
CAGCGTGAGTTAACTCATGT+AGG - chr1_2:18168265-18168284 Msa0060410:CDS 45.0%
GAAAATAGGGAGTGAAGGTG+GGG + chr1_2:18168576-18168595 None:intergenic 45.0%
CGACAAAACATGATTGTGCG+TGG - chr1_2:18169355-18169374 Msa0060410:intron 45.0%
GAATGAAAAGCTCACCAGTG+AGG + chr1_2:18170086-18170105 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr1_2:18170233-18170252 Msa0060410:intron 45.0%
GCCGAGTTTGCATGGAAATT+AGG - chr1_2:18170629-18170648 Msa0060410:intron 45.0%
GAATGAAAAGCCCATCAGTG+AGG - chr1_2:18170781-18170800 Msa0060410:intron 45.0%
CTTGGGTCAAACTTCACACA+TGG - chr1_2:18171725-18171744 Msa0060410:intron 45.0%
GTGCAAACTTTGCAACAGCA+GGG - chr1_2:18171747-18171766 Msa0060410:intron 45.0%
AGGGTTTGAACTTCCACTAG+TGG - chr1_2:18172798-18172817 Msa0060410:CDS 45.0%
GGATGGTACTCATTACACAG+AGG - chr1_2:18172945-18172964 Msa0060410:CDS 45.0%
!!! AAAATTGAATAATTTTTTTA+AGG - chr1_2:18168109-18168128 Msa0060410:CDS 5.0%
!!! TTATACTTTTTAAATAATAA+AGG + chr1_2:18169071-18169090 None:intergenic 5.0%
!!! ATTTTATAATAACAAATAAT+AGG - chr1_2:18169675-18169694 Msa0060410:intron 5.0%
!!! TTTTATAATAACAAATAATA+GGG - chr1_2:18169676-18169695 Msa0060410:intron 5.0%
!! CAAAAATATAATTAATAATT+AGG - chr1_2:18169849-18169868 Msa0060410:intron 5.0%
!!! AATCATAATTTTATTTTTTT+AGG - chr1_2:18171287-18171306 Msa0060410:intron 5.0%
TGCGTGAGTTAACTCATGCG+AGG + chr1_2:18167505-18167524 None:intergenic 50.0%
TCGCATGAGTTAACTCACGC+AGG - chr1_2:18167504-18167523 Msa0060410:CDS 50.0%
CACATGACTTAAGTCAGCGC+AGG - chr1_2:18167560-18167579 Msa0060410:CDS 50.0%
CATGACTTAAGTCAGCGCAG+GGG - chr1_2:18167562-18167581 Msa0060410:CDS 50.0%
GCAGGGGCCAACTATAAAGA+AGG + chr1_2:18168215-18168234 None:intergenic 50.0%
!! GTTAACTCACGCTGACTCAG+CGG + chr1_2:18168259-18168278 None:intergenic 50.0%
TGCGTGAGTTAACTCGCGTT+CGG + chr1_2:18168359-18168378 None:intergenic 50.0%
AAAGAGCAGAAAGACGGGCA+CGG - chr1_2:18169282-18169301 Msa0060410:intron 50.0%
GGTGCAAACTTTGCAACAGC+AGG - chr1_2:18171746-18171765 Msa0060410:intron 50.0%
ATCCCTGCGAAGATGAGCTA+GGG + chr1_2:18172526-18172545 None:intergenic 50.0%
!! CTTCCACTAGTGGCTTGTTG+TGG - chr1_2:18172808-18172827 Msa0060410:CDS 50.0%
TTGCCACAACAAGCCACTAG+TGG + chr1_2:18172814-18172833 None:intergenic 50.0%
!! CTAGTGGCTTGTTGTGGCAA+TGG - chr1_2:18172814-18172833 Msa0060410:CDS 50.0%
!! TGGTAACGGCAGTGCTCGAA+AGG + chr1_2:18167132-18167151 None:intergenic 55.0%
! CGAGCACTGCCGTTACCATA+TGG - chr1_2:18167134-18167153 Msa0060410:CDS 55.0%
GATGCATGCTGCAACAACCG+TGG - chr1_2:18167384-18167403 Msa0060410:CDS 55.0%
GAGCGTGACTTAAGTCACGC+TGG + chr1_2:18167538-18167557 None:intergenic 55.0%
! AGGGGCGTAGCCCTTCATAT+GGG - chr1_2:18167580-18167599 Msa0060410:CDS 55.0%
GCGTAGCCCTTCATATGGGA+GGG - chr1_2:18167584-18167603 Msa0060410:CDS 55.0%
CGTAGCCCTTCATATGGGAG+GGG - chr1_2:18167585-18167604 Msa0060410:CDS 55.0%
GGCTACCCCTCCCATATGAA+GGG + chr1_2:18167593-18167612 None:intergenic 55.0%
AGGCTACCCCTCCCATATGA+AGG + chr1_2:18167594-18167613 None:intergenic 55.0%
TCATATGGGAGGGGTAGCCT+TGG - chr1_2:18167594-18167613 Msa0060410:CDS 55.0%
GTTAGAGATTCGGCGTTGCC+CGG - chr1_2:18169871-18169890 Msa0060410:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr1_2:18170231-18170250 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr1_2:18170228-18170247 Msa0060410:intron 55.0%
AAGGTCCGCGGTTCAAACTC+CGG - chr1_2:18170274-18170293 Msa0060410:intron 55.0%
AATCCGGGCAACGTTAACGC+CGG - chr1_2:18170541-18170560 Msa0060410:intron 55.0%
AAGCCCTAGCTCATCTTCGC+AGG - chr1_2:18172520-18172539 Msa0060410:intron 55.0%
AGCCCTAGCTCATCTTCGCA+GGG - chr1_2:18172521-18172540 Msa0060410:intron 55.0%
GATCCCTGCGAAGATGAGCT+AGG + chr1_2:18172527-18172546 None:intergenic 55.0%
!! GTGGCTTGTTGTGGCAATGG+AGG - chr1_2:18172817-18172836 Msa0060410:CDS 55.0%
! CAGGGGCGTAGCCCTTCATA+TGG - chr1_2:18167579-18167598 Msa0060410:CDS 60.0%
GGCGTAGCCCTTCATATGGG+AGG - chr1_2:18167583-18167602 Msa0060410:CDS 60.0%
ATCCGGGCAACGTTAACGCC+GGG - chr1_2:18170542-18170561 Msa0060410:intron 60.0%
GGTGGCCGGAGTTTGAACCG+CGG + chr1_2:18170282-18170301 None:intergenic 65.0%
GACCCGGCGTTAACGTTGCC+CGG + chr1_2:18170547-18170566 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 18166942 18173035 18166942 ID=Msa0060410;Name=Msa0060410
chr1_2 mRNA 18166942 18173035 18166942 ID=Msa0060410-mRNA-1;Parent=Msa0060410;Name=Msa0060410-mRNA-1;_AED=0.14;_eAED=0.14;_QI=30|1|1|1|0.75|0.6|5|0|378
chr1_2 exon 18166942 18167177 18166942 ID=Msa0060410-mRNA-1:exon:7057;Parent=Msa0060410-mRNA-1
chr1_2 exon 18167356 18167620 18167356 ID=Msa0060410-mRNA-1:exon:7056;Parent=Msa0060410-mRNA-1
chr1_2 exon 18167791 18167960 18167791 ID=Msa0060410-mRNA-1:exon:7055;Parent=Msa0060410-mRNA-1
chr1_2 exon 18168084 18168296 18168084 ID=Msa0060410-mRNA-1:exon:7054;Parent=Msa0060410-mRNA-1
chr1_2 exon 18172756 18173035 18172756 ID=Msa0060410-mRNA-1:exon:7053;Parent=Msa0060410-mRNA-1
chr1_2 five_prime_UTR 18173006 18173035 18173006 ID=Msa0060410-mRNA-1:five_prime_utr;Parent=Msa0060410-mRNA-1
chr1_2 CDS 18172756 18173005 18172756 ID=Msa0060410-mRNA-1:cds;Parent=Msa0060410-mRNA-1
chr1_2 CDS 18168084 18168296 18168084 ID=Msa0060410-mRNA-1:cds;Parent=Msa0060410-mRNA-1
chr1_2 CDS 18167791 18167960 18167791 ID=Msa0060410-mRNA-1:cds;Parent=Msa0060410-mRNA-1
chr1_2 CDS 18167356 18167620 18167356 ID=Msa0060410-mRNA-1:cds;Parent=Msa0060410-mRNA-1
chr1_2 CDS 18166942 18167177 18166942 ID=Msa0060410-mRNA-1:cds;Parent=Msa0060410-mRNA-1
Gene Sequence

>Msa0060410

ATGGCACAAATTGAGTTTCTTAAGCACATGTCACTTGTGTCATTGATTGTGCTTATTTTGTGTTCTACACCCCCAATATTTGCTACAAAGAATTGTGATTTTCCTGCCATTTTTAACTTCGGTGCTTCAAACTCTGATACTGGTGGTTTGGCTGCTGCCTTTCGAGCACTGCCGTTACCATATGGTGAGACTTTTTTCAATAGATCATCTGGAAGATTTTCTGATGGTCGAATCATTCTTGATTTCATAGCACAAAGCTTTCGACTTCCCTATCTAAGTGCATATCTTGATTCTCTTGGGTCAAACTTCACACATGGTGCAAACTTTGCAACAGCAGGGTCAACGATCAAAATTCCTACTAGTAATATCATACCTAGTGGAATGTTTAGTCCATTTTCCCTTCAGGTTCAGTACATTCAATTCAAAGATTTCATACCTAAAACAAGGTTCATTAGGGATCAAGGAGGTGTATTTGCAACATTGATCCCCAAAGAAGATTATTATTCCAAAGCCTTATACACATTTGATATTGGTCAAAATGATCTTACTGCTGGATTTTTTGGTAATAAGACTATACAACAAGTCAACGCTACTGTACCCGATATAGTAAAGAATTTTATAGAGAATATCAAGAACATATACAATTTAGGGGCAAGGTCATTTTGGATACATAACACTGGACCAATTGGATGTGTACCTTTAATTTTGGCCAATTTTCCATCTGCTATAAAGGATAGTTATGGTTGTGCAAAGCAATACAATGAAGTATCTCAATATTTCAATTTAAAGTTGAAGGAAGCCCTAGCTCATCTTCGCAGGGATCTTCCACTAGCAGCAATCACATATGTTGATATTTACTCTCCAAAGCACTCTCTTTTCCAAAATCCAAAAAAATACGGGTTTGAACTTCCACTAGTGGCTTGTTGTGGCAATGGAGGAAAGTACAACTATAACATTAGTGCTGGCTGTGGAGCAACCATAAACATAAATGGTACAAACACTGTTGTGGGTTCATGTAAAAAACCATCTACTAGAATAATATGGGATGGTACTCATTACACAGAGGCAGCTAACAAGATTGTCTTTGATCAAATCTCTACTGGAGCTTTTACAGATCCTCCCATTCCACTAAAT

Protein sequence

>Msa0060410

MAQIEFLKHMSLVSLIVLILCSTPPIFATKNCDFPAIFNFGASNSDTGGLAAAFRALPLPYGETFFNRSSGRFSDGRIILDFIAQSFRLPYLSAYLDSLGSNFTHGANFATAGSTIKIPTSNIIPSGMFSPFSLQVQYIQFKDFIPKTRFIRDQGGVFATLIPKEDYYSKALYTFDIGQNDLTAGFFGNKTIQQVNATVPDIVKNFIENIKNIYNLGARSFWIHNTGPIGCVPLILANFPSAIKDSYGCAKQYNEVSQYFNLKLKEALAHLRRDLPLAAITYVDIYSPKHSLFQNPKKYGFELPLVACCGNGGKYNYNISAGCGATININGTNTVVGSCKKPSTRIIWDGTHYTEAANKIVFDQISTGAFTDPPIPLN