AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1212080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1212080 MtrunA17_Chr4g0060811 97.826 368 8 0 1 368 1 368 0.0 740
Msa1212080 MtrunA17_Chr3g0092131 79.076 368 72 2 1 368 1 363 0.0 606
Msa1212080 MtrunA17_Chr5g0434621 46.707 334 176 2 8 341 6 337 5.41e-109 323
Msa1212080 MtrunA17_Chr2g0294301 42.730 337 184 7 10 341 18 350 1.67e-83 258
Msa1212080 MtrunA17_Chr4g0068441 45.141 319 166 6 28 341 36 350 3.63e-82 254
Msa1212080 MtrunA17_Chr4g0017431 38.988 336 198 6 6 337 9 341 1.90e-81 253
Msa1212080 MtrunA17_Chr2g0294311 42.945 326 169 6 29 341 34 355 4.21e-78 244
Msa1212080 MtrunA17_Chr8g0374101 40.683 322 180 8 29 341 39 358 5.76e-78 244
Msa1212080 MtrunA17_Chr3g0131321 38.608 316 187 5 29 339 36 349 6.41e-75 237
Msa1212080 MtrunA17_Chr3g0077571 37.425 334 202 5 4 337 9 335 6.33e-74 233
Msa1212080 MtrunA17_Chr5g0438621 37.243 341 205 8 7 343 11 346 5.08e-71 226
Msa1212080 MtrunA17_Chr1g0189901 34.925 335 214 4 8 340 12 344 3.92e-69 221
Msa1212080 MtrunA17_Chr1g0189931 35.952 331 206 5 15 341 18 346 1.95e-68 219
Msa1212080 MtrunA17_Chr7g0275011 35.799 338 213 4 7 342 14 349 2.03e-68 219
Msa1212080 MtrunA17_Chr8g0380041 37.283 346 202 9 1 337 1 340 2.25e-68 219
Msa1212080 MtrunA17_Chr7g0275001 36.950 341 204 6 9 342 5 341 4.03e-68 218
Msa1212080 MtrunA17_Chr2g0285061 34.524 336 210 7 6 337 13 342 7.98e-68 218
Msa1212080 MtrunA17_Chr7g0275021 36.508 315 196 4 29 341 36 348 4.88e-67 216
Msa1212080 MtrunA17_Chr3g0086641 34.412 340 211 6 6 337 12 347 1.64e-66 214
Msa1212080 MtrunA17_Chr4g0008851 36.232 345 213 6 1 341 7 348 2.12e-66 214
Msa1212080 MtrunA17_Chr1g0182811 35.484 341 212 7 6 342 14 350 1.13e-65 212
Msa1212080 MtrunA17_Chr3g0099151 32.070 343 218 7 7 340 67 403 1.45e-65 214
Msa1212080 MtrunA17_Chr5g0438631 37.304 319 191 7 30 343 31 345 3.26e-65 211
Msa1212080 MtrunA17_Chr7g0274991 36.825 315 195 4 29 341 35 347 6.84e-65 210
Msa1212080 MtrunA17_Chr3g0105401 34.006 347 222 6 1 343 2 345 2.81e-63 206
Msa1212080 MtrunA17_Chr3g0099161 31.563 339 224 4 7 340 72 407 6.37e-63 207
Msa1212080 MtrunA17_Chr5g0444401 31.507 365 230 6 1 357 1 353 1.89e-62 204
Msa1212080 MtrunA17_Chr6g0457921 35.072 345 214 7 3 341 4 344 1.31e-59 196
Msa1212080 MtrunA17_Chr3g0120861 35.016 317 198 7 30 342 41 353 2.09e-59 196
Msa1212080 MtrunA17_Chr1g0189891 36.047 344 207 7 1 341 5 338 4.25e-59 195
Msa1212080 MtrunA17_Chr3g0099231 29.855 345 233 6 1 340 2 342 5.09e-59 196
Msa1212080 MtrunA17_Chr3g0077581 39.623 318 177 12 29 337 38 349 2.16e-58 193
Msa1212080 MtrunA17_Chr5g0396511 33.119 311 204 3 29 337 48 356 5.10e-58 193
Msa1212080 MtrunA17_Chr1g0156921 32.288 319 210 5 29 344 44 359 3.06e-56 187
Msa1212080 MtrunA17_Chr2g0320671 33.754 317 202 6 29 341 32 344 3.15e-56 187
Msa1212080 MtrunA17_Chr1g0156911 32.609 322 210 6 29 347 39 356 1.69e-55 186
Msa1212080 MtrunA17_Chr7g0215961 32.059 340 211 6 7 341 10 334 2.11e-55 185
Msa1212080 MtrunA17_Chr8g0341001 33.623 345 213 10 6 341 10 347 2.78e-54 182
Msa1212080 MtrunA17_Chr5g0438641 31.534 352 226 10 1 342 1 347 1.73e-53 180
Msa1212080 MtrunA17_Chr3g0085881 38.585 311 174 9 29 337 35 330 5.17e-53 179
Msa1212080 MtrunA17_Chr1g0156931 32.177 317 207 6 31 344 45 356 1.29e-52 178
Msa1212080 MtrunA17_Chr8g0371481 32.188 320 204 7 31 343 45 358 2.18e-52 177
Msa1212080 MtrunA17_Chr8g0370951 29.144 374 247 7 2 366 4 368 2.77e-52 177
Msa1212080 MtrunA17_Chr8g0371491 32.602 319 207 7 29 343 38 352 4.35e-52 177
Msa1212080 MtrunA17_Chr2g0284921 37.658 316 176 11 29 337 36 337 4.68e-52 177
Msa1212080 MtrunA17_Chr3g0142921 31.661 319 212 5 29 344 38 353 7.15e-52 176
Msa1212080 MtrunA17_Chr5g0432101 33.233 331 205 9 30 349 36 361 1.16e-51 176
Msa1212080 MtrunA17_Chr5g0405821 32.692 312 202 7 31 337 47 355 2.71e-51 175
Msa1212080 MtrunA17_Chr5g0420811 33.333 345 204 10 1 337 6 332 2.75e-51 174
Msa1212080 MtrunA17_Chr2g0285001 37.537 341 187 11 7 337 13 337 2.76e-51 175
Msa1212080 MtrunA17_Chr2g0301641 33.230 322 197 7 29 340 45 358 6.17e-51 175
Msa1212080 MtrunA17_Chr8g0371471 31.546 317 209 7 31 343 45 357 6.37e-51 174
Msa1212080 MtrunA17_Chr2g0284951 37.135 342 184 12 6 337 12 332 1.14e-50 173
Msa1212080 MtrunA17_Chr3g0142941 31.975 319 209 7 31 345 51 365 3.67e-50 172
Msa1212080 MtrunA17_Chr8g0344941 31.909 351 216 9 3 340 15 355 4.62e-50 172
Msa1212080 MtrunA17_Chr1g0156891 31.776 321 209 6 29 344 45 360 5.83e-50 171
Msa1212080 MtrunA17_Chr1g0156901 31.348 319 212 6 29 344 52 366 6.38e-50 171
Msa1212080 MtrunA17_Chr3g0085231 33.333 342 204 9 5 338 5 330 1.04e-49 170
Msa1212080 MtrunA17_Chr4g0027521 33.333 336 213 7 13 341 13 344 1.85e-49 169
Msa1212080 MtrunA17_Chr2g0284991 34.417 369 220 12 6 364 12 368 6.99e-49 169
Msa1212080 MtrunA17_Chr2g0330781 34.385 317 197 9 31 341 35 346 2.50e-48 167
Msa1212080 MtrunA17_Chr8g0380031 35.093 322 174 10 29 338 86 384 4.55e-48 167
Msa1212080 MtrunA17_Chr5g0405831 31.546 317 208 8 30 341 46 358 4.67e-47 164
Msa1212080 MtrunA17_Chr4g0046151 31.143 350 221 11 7 341 15 359 1.97e-46 162
Msa1212080 MtrunA17_Chr2g0283191 28.986 345 226 10 3 332 12 352 1.98e-44 157
Msa1212080 MtrunA17_Chr8g0349341 27.874 348 225 8 6 340 12 346 4.90e-43 153
Msa1212080 MtrunA17_Chr8g0349321 29.907 321 203 7 26 337 36 343 5.00e-43 153
Msa1212080 MtrunA17_Chr8g0344931 30.460 348 213 8 7 337 4 339 9.23e-43 152
Msa1212080 MtrunA17_Chr5g0437421 30.368 326 200 7 29 338 34 348 2.52e-42 151
Msa1212080 MtrunA17_Chr8g0370981 29.722 360 194 11 29 337 46 397 1.91e-41 150
Msa1212080 MtrunA17_Chr2g0284941 35.443 316 168 10 29 340 35 318 2.13e-41 148
Msa1212080 MtrunA17_Chr1g0157001 28.280 343 222 7 32 363 41 370 5.95e-41 148
Msa1212080 MtrunA17_Chr6g0459921 33.478 230 144 6 119 342 119 345 8.28e-41 147
Msa1212080 MtrunA17_Chr6g0455661 32.906 234 144 6 115 342 230 456 1.10e-39 146
Msa1212080 MtrunA17_Chr6g0455661 51.087 92 40 3 29 120 33 119 5.97e-16 79.0
Msa1212080 MtrunA17_Chr8g0349301 29.371 286 184 6 26 307 36 307 2.51e-36 134
Msa1212080 MtrunA17_Chr8g0349331 29.560 318 172 7 29 337 37 311 2.81e-34 129
Msa1212080 MtrunA17_Chr4g0027571 32.407 216 136 5 132 341 3 214 1.47e-32 121
Msa1212080 MtrunA17_Chr7g0226911 25.806 403 222 14 6 361 9 381 2.44e-30 119
Msa1212080 MtrunA17_Chr8g0370961 28.821 229 150 5 119 341 6 227 1.28e-29 114
Msa1212080 MtrunA17_Chr1g0160101 27.297 370 213 14 6 340 23 371 1.17e-28 115
Msa1212080 MtrunA17_Chr7g0271551 29.042 334 198 10 27 341 36 349 4.08e-28 113
Msa1212080 MtrunA17_Chr8g0381581 26.705 352 204 12 29 344 42 375 7.21e-27 110
Msa1212080 MtrunA17_Chr7g0226931 26.111 360 203 11 29 341 40 383 9.26e-27 109
Msa1212080 MtrunA17_Chr2g0283481 28.969 359 221 15 6 342 28 374 1.06e-26 109
Msa1212080 MtrunA17_Chr5g0440501 23.853 218 158 2 128 337 10 227 1.03e-25 103
Msa1212080 MtrunA17_Chr6g0450731 27.879 330 201 11 31 342 37 347 2.22e-25 105
Msa1212080 MtrunA17_Chr7g0229581 36.620 142 83 3 205 341 8 147 2.51e-25 100
Msa1212080 MtrunA17_Chr3g0104821 26.176 340 212 13 29 342 46 372 3.48e-25 105
Msa1212080 MtrunA17_Chr1g0178931 26.220 328 204 12 29 343 39 341 1.15e-24 103
Msa1212080 MtrunA17_Chr4g0057991 27.761 335 207 13 29 342 41 361 1.54e-24 103
Msa1212080 MtrunA17_Chr7g0275291 25.205 365 231 12 6 341 9 360 1.88e-24 103
Msa1212080 MtrunA17_Chr7g0254461 25.723 346 210 12 29 341 45 376 4.24e-24 102
Msa1212080 MtrunA17_Chr2g0283531 28.443 334 209 13 29 341 33 357 4.51e-23 99.0
Msa1212080 MtrunA17_Chr2g0283501 26.027 365 237 12 9 347 13 370 6.11e-23 98.6
Msa1212080 MtrunA17_Chr1g0159971 27.746 346 197 14 29 340 49 375 7.13e-23 99.0
Msa1212080 MtrunA17_Chr6g0450721 25.543 368 223 13 1 341 1 344 7.44e-23 98.2
Msa1212080 MtrunA17_Chr3g0093031 28.453 362 210 15 29 363 32 371 8.30e-23 98.2
Msa1212080 MtrunA17_Chr7g0273101 27.405 343 205 12 29 341 31 359 1.17e-22 98.2
Msa1212080 MtrunA17_Chr2g0301581 27.171 357 203 15 29 362 36 358 1.96e-22 97.1
Msa1212080 MtrunA17_Chr3g0112821 28.011 357 213 14 29 363 32 366 2.45e-22 97.1
Msa1212080 MtrunA17_Chr7g0266061 26.087 322 207 12 29 340 44 344 5.89e-22 95.5
Msa1212080 MtrunA17_Chr1g0178941 25.749 334 206 11 29 343 42 352 9.47e-22 95.1
Msa1212080 MtrunA17_Chr2g0283511 29.217 332 207 14 32 342 36 360 9.60e-22 95.5
Msa1212080 MtrunA17_Chr7g0226941 26.879 346 199 11 31 341 37 363 1.05e-21 95.5
Msa1212080 MtrunA17_Chr8g0347751 25.581 344 211 13 29 341 38 367 1.71e-21 94.7
Msa1212080 MtrunA17_Chr3g0096551 26.882 372 211 15 29 362 31 379 5.03e-21 93.2
Msa1212080 MtrunA17_Chr1g0160031 25.000 300 193 8 67 341 74 366 5.23e-21 93.2
Msa1212080 MtrunA17_Chr1g0198351 25.656 343 213 12 8 332 17 335 7.37e-21 92.4
Msa1212080 MtrunA17_Chr2g0301541 26.611 357 205 15 29 362 36 358 7.78e-21 92.4
Msa1212080 MtrunA17_Chr1g0191461 24.731 372 227 14 5 343 11 362 9.77e-21 92.4
Msa1212080 MtrunA17_Chr4g0018571 37.857 140 84 2 205 341 31 170 1.15e-20 88.2
Msa1212080 MtrunA17_Chr2g0317271 26.048 334 205 13 29 342 32 343 1.15e-20 92.0
Msa1212080 MtrunA17_Chr6g0450701 27.083 336 205 14 31 341 43 363 1.19e-20 92.4
Msa1212080 MtrunA17_Chr0c01g0489581 26.048 334 205 13 29 342 32 343 1.51e-20 91.7
Msa1212080 MtrunA17_Chr1g0160011 26.158 367 231 14 1 340 13 366 1.51e-20 92.0
Msa1212080 MtrunA17_Chr0c01g0489571 26.048 334 205 13 29 342 32 343 1.80e-20 91.7
Msa1212080 MtrunA17_Chr1g0159981 25.676 370 232 15 1 340 18 374 2.66e-20 91.3
Msa1212080 MtrunA17_Chr1g0189921 39.062 128 76 2 3 130 7 132 5.39e-20 85.9
Msa1212080 MtrunA17_Chr1g0159991 24.189 339 218 9 29 340 38 364 8.33e-20 89.7
Msa1212080 MtrunA17_Chr6g0450711 26.100 341 202 11 31 341 126 446 1.01e-19 90.1
Msa1212080 MtrunA17_Chr1g0198381 24.684 316 202 11 29 332 4 295 2.43e-19 87.8
Msa1212080 MtrunA17_Chr2g0317261 25.449 334 207 13 29 342 32 343 2.50e-19 88.2
Msa1212080 MtrunA17_Chr7g0229591 33.758 157 101 3 29 184 32 186 1.24e-17 80.9
Msa1212080 MtrunA17_Chr1g0189911 29.688 128 88 2 216 341 1 128 2.24e-17 78.6
Msa1212080 MtrunA17_Chr6g0469521 35.878 131 81 2 195 322 22 152 2.98e-17 78.2
Msa1212080 MtrunA17_Chr8g0352901 23.989 371 238 11 1 341 1 357 4.60e-17 81.6
Msa1212080 MtrunA17_Chr2g0321991 36.641 131 72 4 1 129 6 127 5.53e-17 76.6
Msa1212080 MtrunA17_Chr8g0370971 45.833 96 47 3 29 120 40 134 6.08e-17 77.8
Msa1212080 MtrunA17_Chr2g0308211 34.109 129 81 2 78 204 19 145 8.92e-16 73.9
Msa1212080 MtrunA17_Chr3g0112691 25.691 362 218 15 29 363 32 369 1.69e-15 77.0
Msa1212080 MtrunA17_Chr7g0228261 41.538 65 38 0 278 342 11 75 1.93e-13 65.9
Msa1212080 MtrunA17_Chr2g0301551 23.934 305 185 11 78 362 37 314 2.77e-13 70.1
Msa1212080 MtrunA17_Chr2g0301571 24.042 287 174 11 78 342 37 301 3.63e-13 69.7
Msa1212080 MtrunA17_Chr1g0198391 23.810 357 199 10 29 345 35 358 1.42e-12 68.2
Msa1212080 MtrunA17_Chr6g0469511 36.283 113 70 2 29 141 32 142 4.26e-12 63.2
Msa1212080 MtrunA17_Chr4g0027581 28.859 149 77 5 220 341 41 187 5.43e-12 64.7
Msa1212080 MtrunA17_Chr3g0104831 23.864 264 165 11 105 342 38 291 1.27e-11 65.1
Msa1212080 MtrunA17_Chr5g0432081 38.806 67 37 1 287 349 10 76 2.96e-11 58.9
Msa1212080 MtrunA17_Chr8g0339251 25.632 277 177 10 31 296 32 290 3.96e-11 63.5
Msa1212080 MtrunA17_Chr2g0285041 32.203 118 76 3 89 204 9 124 9.73e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1212080 AT1G74460.1 68.108 370 111 3 1 368 1 365 0.0 529
Msa1212080 AT5G37690.1 45.455 341 184 2 1 341 1 339 2.50e-108 322
Msa1212080 AT5G37690.2 43.695 341 182 3 1 341 1 331 1.91e-100 301
Msa1212080 AT3G50400.1 41.615 322 178 7 29 341 36 356 9.74e-80 249
Msa1212080 AT5G08460.1 39.349 338 194 6 9 337 28 363 5.83e-78 245
Msa1212080 AT5G15720.1 42.056 321 176 6 29 343 32 348 7.18e-78 244
Msa1212080 AT2G23540.1 39.875 321 184 6 29 341 50 369 2.40e-76 241
Msa1212080 AT1G71250.1 36.950 341 203 6 8 339 16 353 2.41e-74 235
Msa1212080 AT5G41890.1 36.134 357 195 11 22 357 22 366 3.71e-71 227
Msa1212080 AT4G28780.1 36.095 338 212 3 6 341 10 345 8.05e-71 226
Msa1212080 AT1G71691.2 39.617 313 181 5 29 339 57 363 2.34e-70 225
Msa1212080 AT1G29660.1 37.982 337 198 8 7 337 10 341 4.21e-68 219
Msa1212080 AT1G29670.1 36.657 341 203 9 4 337 6 340 2.74e-67 216
Msa1212080 AT1G33811.1 39.308 318 180 8 29 337 36 349 3.25e-67 217
Msa1212080 AT3G04290.1 37.143 315 194 4 29 341 31 343 6.04e-67 216
Msa1212080 AT1G29670.2 36.550 342 204 9 3 337 73 408 2.48e-66 216
Msa1212080 AT5G33370.1 35.238 315 200 4 29 341 32 344 8.04e-63 205
Msa1212080 AT5G45670.1 34.211 342 217 7 6 343 8 345 1.61e-62 204
Msa1212080 AT4G18970.1 34.169 319 202 6 29 343 30 344 1.40e-61 202
Msa1212080 AT5G18430.1 35.647 317 198 5 29 341 30 344 1.60e-61 202
Msa1212080 AT5G15720.3 39.483 271 157 4 79 343 48 317 2.68e-61 200
Msa1212080 AT4G18970.2 34.169 319 202 6 29 343 30 344 9.96e-61 201
Msa1212080 AT4G10950.2 32.484 314 208 3 29 340 73 384 7.59e-60 199
Msa1212080 AT2G04570.1 32.941 340 218 8 6 341 9 342 2.48e-58 193
Msa1212080 AT3G14820.1 35.737 319 193 8 30 344 35 345 9.97e-58 191
Msa1212080 AT4G26790.1 35.535 318 195 8 30 342 32 344 1.48e-57 191
Msa1212080 AT4G26790.2 35.535 318 195 8 30 342 32 344 1.48e-57 191
Msa1212080 AT2G42990.1 34.513 339 213 8 10 343 10 344 3.64e-57 190
Msa1212080 AT5G42170.1 33.333 318 201 7 31 344 54 364 5.72e-57 190
Msa1212080 AT4G10950.1 32.484 314 204 4 29 340 73 380 9.41e-57 190
Msa1212080 AT5G55050.1 34.421 337 204 8 18 341 26 358 5.15e-56 188
Msa1212080 AT1G71691.1 36.364 264 162 3 78 339 3 262 8.39e-56 184
Msa1212080 AT5G15720.2 41.509 265 145 6 29 287 32 292 9.49e-56 185
Msa1212080 AT1G58430.1 33.438 320 205 6 29 343 37 353 3.30e-55 185
Msa1212080 AT1G75890.2 32.602 319 208 6 30 344 50 365 2.01e-54 183
Msa1212080 AT2G30220.1 32.063 315 206 6 29 338 35 346 2.63e-54 183
Msa1212080 AT1G75890.3 32.602 319 208 6 30 344 79 394 5.12e-54 183
Msa1212080 AT1G75890.1 32.326 331 206 8 30 344 50 378 9.92e-54 182
Msa1212080 AT2G19060.1 33.754 317 182 12 29 336 32 329 1.77e-52 178
Msa1212080 AT2G30310.1 31.013 316 208 7 29 338 36 347 7.06e-52 176
Msa1212080 AT2G31540.1 31.962 316 207 6 30 340 38 350 2.11e-51 175
Msa1212080 AT1G59406.1 30.857 350 225 8 5 344 2 344 2.11e-51 175
Msa1212080 AT1G59030.1 30.857 350 225 8 5 344 2 344 2.11e-51 175
Msa1212080 AT1G58725.1 30.857 350 225 8 5 344 2 344 2.11e-51 175
Msa1212080 AT1G71691.3 39.847 261 149 5 29 287 57 311 7.10e-51 172
Msa1212080 AT1G20120.1 31.562 320 207 8 29 342 80 393 9.06e-51 175
Msa1212080 AT5G03810.1 30.747 348 231 8 1 343 5 347 1.14e-50 173
Msa1212080 AT3G16370.1 34.356 326 202 10 31 350 34 353 2.53e-50 172
Msa1212080 AT4G16230.1 41.150 226 127 4 5 228 9 230 1.55e-49 167
Msa1212080 AT1G75880.1 31.975 319 210 6 30 344 55 370 1.90e-49 171
Msa1212080 AT5G22810.1 33.642 324 196 10 29 341 36 351 2.48e-49 170
Msa1212080 AT2G24560.1 31.013 316 210 6 30 340 37 349 5.08e-49 169
Msa1212080 AT2G19010.1 34.494 316 181 11 29 337 32 328 5.57e-49 169
Msa1212080 AT1G75900.1 32.500 320 203 8 31 344 47 359 5.84e-49 169
Msa1212080 AT5G45950.1 31.790 324 213 7 19 341 32 348 1.30e-48 168
Msa1212080 AT2G19010.2 34.494 316 181 11 29 337 62 358 2.25e-48 168
Msa1212080 AT1G75880.2 32.288 319 208 7 30 344 55 369 2.64e-48 167
Msa1212080 AT2G19050.1 34.185 313 186 11 29 337 33 329 1.27e-47 165
Msa1212080 AT1G58520.3 31.975 319 199 7 30 344 33 337 2.75e-47 164
Msa1212080 AT1G58525.1 31.975 319 199 7 30 344 33 337 2.75e-47 164
Msa1212080 AT5G03820.1 32.184 348 219 11 1 341 12 349 3.15e-47 164
Msa1212080 AT5G45960.1 31.661 319 204 8 23 332 43 356 7.36e-47 164
Msa1212080 AT5G03820.2 32.184 348 219 11 1 341 40 377 7.87e-47 164
Msa1212080 AT2G40250.1 31.692 325 208 6 29 344 38 357 8.74e-47 163
Msa1212080 AT1G06990.1 29.907 321 214 7 29 343 39 354 1.42e-46 162
Msa1212080 AT2G03980.2 32.808 317 195 8 29 337 45 351 2.75e-46 162
Msa1212080 AT2G03980.3 32.808 317 195 8 29 337 45 351 2.75e-46 162
Msa1212080 AT2G03980.1 32.808 317 195 8 29 337 45 351 2.75e-46 162
Msa1212080 AT2G03980.4 32.808 317 195 8 29 337 45 351 2.75e-46 162
Msa1212080 AT1G71120.1 30.408 319 203 8 29 340 33 339 5.81e-46 161
Msa1212080 AT5G33370.2 34.483 261 167 4 29 287 32 290 2.10e-45 159
Msa1212080 AT1G20132.1 31.790 324 205 9 29 344 63 378 2.58e-45 160
Msa1212080 AT3G53100.1 32.075 318 208 7 30 343 32 345 2.78e-45 159
Msa1212080 AT4G30140.1 33.861 316 183 12 29 338 35 330 4.52e-45 158
Msa1212080 AT1G53920.1 29.091 330 218 7 17 338 38 359 1.47e-43 155
Msa1212080 AT3G43570.1 29.747 316 188 7 30 344 33 315 5.45e-43 152
Msa1212080 AT3G14225.2 30.864 324 205 7 29 341 39 354 2.10e-42 152
Msa1212080 AT3G14225.1 30.982 326 206 7 29 341 39 358 3.26e-42 151
Msa1212080 AT1G20135.1 29.341 334 220 7 5 336 7 326 4.96e-41 147
Msa1212080 AT5G63170.1 30.909 330 206 10 7 332 10 321 1.88e-40 146
Msa1212080 AT1G73610.1 31.861 317 199 7 29 343 37 338 2.52e-40 145
Msa1212080 AT5G40990.1 30.769 325 204 9 29 341 39 354 1.08e-39 145
Msa1212080 AT1G20130.1 30.395 329 210 10 29 344 206 528 1.23e-39 147
Msa1212080 AT1G20130.2 30.395 329 210 10 29 344 186 508 1.26e-39 147
Msa1212080 AT2G19050.2 35.887 248 145 8 29 273 33 269 1.22e-37 137
Msa1212080 AT1G53990.1 29.379 354 217 10 6 341 7 345 1.25e-37 139
Msa1212080 AT1G75920.2 28.349 321 204 7 31 342 33 336 2.65e-37 137
Msa1212080 AT1G53940.2 29.012 324 211 7 29 341 41 356 4.81e-37 137
Msa1212080 AT1G23500.1 31.045 335 197 10 19 342 27 338 1.26e-36 136
Msa1212080 AT2G24560.2 31.295 278 181 7 29 301 36 308 1.63e-36 135
Msa1212080 AT3G43550.1 31.418 261 169 5 30 287 33 286 1.30e-34 129
Msa1212080 AT1G75920.1 27.381 336 203 8 31 342 28 346 3.16e-34 129
Msa1212080 AT1G75920.4 27.365 296 190 6 56 342 29 308 6.15e-33 125
Msa1212080 AT1G75930.1 29.938 324 197 12 29 341 31 335 7.55e-33 125
Msa1212080 AT1G54030.1 27.832 309 194 11 29 333 54 337 2.34e-32 125
Msa1212080 AT1G75910.1 26.266 316 218 5 31 342 32 336 1.04e-30 120
Msa1212080 AT2G31550.1 29.524 210 143 3 135 340 1 209 2.01e-30 116
Msa1212080 AT3G14220.1 29.375 320 199 11 27 338 32 332 6.83e-29 115
Msa1212080 AT2G04020.1 36.683 199 116 4 29 225 45 235 7.29e-29 113
Msa1212080 AT2G04020.2 36.683 199 116 4 29 225 45 235 1.48e-28 114
Msa1212080 AT3G14210.1 28.267 329 199 13 26 340 35 340 1.42e-27 112
Msa1212080 AT1G75920.3 25.857 321 181 8 31 342 33 305 2.02e-27 110
Msa1212080 AT2G27360.1 26.331 357 231 11 9 341 13 361 1.83e-26 109
Msa1212080 AT1G53940.1 28.000 275 182 6 29 298 41 304 2.31e-26 107
Msa1212080 AT1G28580.1 28.338 367 220 14 5 341 11 364 1.38e-25 106
Msa1212080 AT3G05180.1 28.161 348 196 12 29 341 38 366 1.98e-25 106
Msa1212080 AT3G27950.1 27.371 369 226 12 1 341 1 355 2.43e-25 105
Msa1212080 AT1G54790.3 26.158 367 223 14 9 341 10 362 3.91e-25 105
Msa1212080 AT5G14450.1 25.341 367 234 11 3 341 17 371 4.63e-25 105
Msa1212080 AT3G48460.1 25.595 336 213 12 29 341 40 361 7.75e-25 104
Msa1212080 AT1G54020.2 24.425 348 233 11 1 338 1 328 7.95e-25 104
Msa1212080 AT1G54010.1 25.000 348 223 12 3 341 21 339 1.47e-24 103
Msa1212080 AT1G09390.1 26.590 346 202 12 24 341 32 353 2.53e-24 102
Msa1212080 AT1G31550.2 27.326 344 218 11 22 342 29 363 3.77e-24 102
Msa1212080 AT1G54030.2 27.734 256 158 9 29 280 54 286 3.85e-24 101
Msa1212080 AT1G54000.1 23.837 344 236 9 6 341 14 339 4.66e-24 102
Msa1212080 AT3G62280.1 26.549 339 211 11 22 341 31 350 1.12e-23 101
Msa1212080 AT4G16233.1 40.187 107 63 1 236 341 6 112 9.88e-23 92.8
Msa1212080 AT1G28570.1 27.300 337 208 13 31 342 38 362 4.95e-22 96.7
Msa1212080 AT1G28590.1 26.301 365 231 14 5 342 11 364 5.48e-22 96.7
Msa1212080 AT1G67830.1 26.377 345 206 11 29 340 32 361 6.48e-22 96.3
Msa1212080 AT5G03610.1 24.920 313 205 9 29 330 45 338 6.61e-22 95.9
Msa1212080 AT1G28650.1 25.691 362 230 13 7 341 15 364 1.01e-21 95.9
Msa1212080 AT1G56670.1 24.595 370 224 12 3 341 11 356 1.24e-21 95.5
Msa1212080 AT1G54790.1 25.852 352 199 13 29 341 33 361 1.59e-21 95.1
Msa1212080 AT1G28610.2 26.486 370 224 14 4 342 6 358 1.95e-21 95.1
Msa1212080 AT1G28660.1 24.863 366 234 13 4 341 10 362 2.36e-21 94.7
Msa1212080 AT4G01130.1 25.600 375 225 16 2 341 10 365 2.81e-21 94.4
Msa1212080 AT3G26430.1 26.801 347 202 13 29 340 33 362 3.41e-21 94.4
Msa1212080 AT1G28660.2 24.863 366 233 14 4 341 10 361 4.21e-21 94.0
Msa1212080 AT1G28600.1 24.518 363 238 11 4 341 6 357 2.59e-20 91.7
Msa1212080 AT1G31550.1 26.453 344 218 12 22 342 29 360 4.87e-20 90.9
Msa1212080 AT5G45910.1 29.825 342 200 17 29 341 32 362 5.44e-20 90.5
Msa1212080 AT1G28640.1 23.483 379 246 14 4 356 10 370 6.95e-20 90.5
Msa1212080 AT1G28670.1 23.352 364 243 12 4 341 10 363 4.97e-19 88.2
Msa1212080 AT3G09930.2 24.615 325 216 8 29 342 41 347 1.88e-18 85.9
Msa1212080 AT3G09930.1 24.615 325 216 8 29 342 41 347 1.88e-18 85.9
Msa1212080 AT4G16220.1 38.406 138 81 3 5 142 9 142 9.69e-18 82.0
Msa1212080 AT1G54020.1 22.692 260 179 8 83 338 1 242 1.18e-15 77.0
Msa1212080 AT1G54020.5 22.692 260 179 8 83 338 1 242 1.18e-15 77.0
Msa1212080 AT1G54020.3 22.692 260 179 8 83 338 1 242 1.18e-15 77.0
Msa1212080 AT3G14210.2 27.830 212 138 8 140 340 5 212 5.72e-15 74.7
Msa1212080 AT1G54020.4 22.995 187 139 3 155 338 9 193 1.33e-14 73.2
Msa1212080 AT1G28580.2 26.502 283 172 11 83 341 13 283 2.81e-13 70.5
Msa1212080 AT4G01130.3 23.431 239 145 8 126 341 56 279 4.76e-13 69.3
Msa1212080 AT3G62280.2 26.071 280 174 10 22 287 31 291 1.39e-12 68.2
Msa1212080 AT1G56670.2 24.437 311 185 10 3 287 11 297 1.00e-11 65.5

Find 81 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAACTTATTAAGAAATT+TGG 0.099606 8_1:+71936665 Msa1212080:CDS
TATTATAGTAGCCATCATTT+TGG 0.216688 8_1:+71933509 Msa1212080:CDS
TACACTTTCTCGACAATTTC+CGG 0.223904 8_1:-71935810 None:intergenic
TTAGAAGCAAAATTGGAAAA+AGG 0.224651 8_1:+71935405 Msa1212080:CDS
GAACTAATTAGAAGCAAAAT+TGG 0.258541 8_1:+71935398 Msa1212080:CDS
ATCATGAATGATTAATCTTC+TGG 0.259630 8_1:-71936749 None:intergenic
GACTCACCCTGTTGTTCCTT+TGG 0.261203 8_1:+71936527 Msa1212080:CDS
ACAGAAGCAAATATGTGTTT+TGG 0.275454 8_1:+71936600 Msa1212080:CDS
GCTCAATATGTTGTTGCTTT+AGG 0.276115 8_1:+71935452 Msa1212080:CDS
GAGAAAGATATACTAATAAA+TGG 0.293441 8_1:+71935177 Msa1212080:CDS
AAGGTTGTGCAATTCATATT+TGG 0.300714 8_1:+71933558 Msa1212080:CDS
AAAGTTGACACTCACAAAAT+AGG 0.330676 8_1:-71935247 None:intergenic
ACTCACCCTGTTGTTCCTTT+GGG 0.333100 8_1:+71936528 Msa1212080:CDS
TGCCTCTTTACACTGATTCA+TGG 0.338743 8_1:+71935504 Msa1212080:CDS
ATATCTACTTACCGTACTTA+AGG 0.342425 8_1:-71935961 None:intergenic
CCAAATCTATAGTTTGAGTT+AGG 0.347883 8_1:-71935899 None:intergenic
CCTAACTCAAACTATAGATT+TGG 0.348307 8_1:+71935899 Msa1212080:CDS
ACCTTCATGGATTACTTGAT+AGG 0.374879 8_1:+71935542 Msa1212080:CDS
CGCACAGTTGCTGATATAAT+AGG 0.392444 8_1:+71933702 Msa1212080:CDS
CATATTTGGAGACTCTCTTT+CGG 0.399756 8_1:+71933572 Msa1212080:CDS
AACAGGGTGAGTCTGAGTTT+TGG 0.402399 8_1:-71936517 None:intergenic
AATGGATTGAACTATGCTTC+TGG 0.403982 8_1:+71935195 Msa1212080:CDS
AATTAACATGGAGTTTAGTA+AGG 0.407205 8_1:+71933479 None:intergenic
TATCTACTTACCGTACTTAA+GGG 0.412191 8_1:-71935960 None:intergenic
AATTCTCCCAAAGGAACAAC+AGG 0.412467 8_1:-71936534 None:intergenic
ATGGTATAGACATGGGTAAT+GGG 0.431513 8_1:+71933652 Msa1212080:CDS
CAAAGGGTACTTACTACAAC+CGG 0.438934 8_1:+71935791 Msa1212080:CDS
ATACAATGACGAAACCTTCA+TGG 0.445894 8_1:+71935529 Msa1212080:CDS
AAACAAATTGAGTTGTTTCA+AGG 0.447844 8_1:+71935368 Msa1212080:CDS
GGAGACTCTCTTTCGGATGT+TGG 0.448034 8_1:+71933579 Msa1212080:CDS
GGCGGTATCTTGAATGAAAC+TGG 0.450851 8_1:+71935222 Msa1212080:CDS
ATGGGTAATGGGTTACCTAA+TGG 0.453961 8_1:+71933663 Msa1212080:CDS
CCATTGGAGAACCTTCCATT+AGG 0.454476 8_1:-71933678 None:intergenic
ATCAGCAACTGTGCGTCCAT+TGG 0.456604 8_1:-71933694 None:intergenic
GCTTGAAGGAAGCCATTGTA+AGG 0.480972 8_1:+71933539 Msa1212080:CDS
TTGAACTATGCTTCTGGTGG+TGG 0.481430 8_1:+71935201 Msa1212080:CDS
TATGGTATAGACATGGGTAA+TGG 0.488782 8_1:+71933651 Msa1212080:CDS
AACAAATTGAGTTGTTTCAA+GGG 0.493665 8_1:+71935369 Msa1212080:CDS
AACTATGCTTCTGGTGGTGG+CGG 0.499017 8_1:+71935204 Msa1212080:CDS
TGGGTTGCATTCCACTTCAA+AGG 0.501557 8_1:+71935774 Msa1212080:CDS
TAGCTCAGGCAAGCTTGCCT+TGG 0.502282 8_1:+71933628 Msa1212080:CDS
CAGGCAAGCTTGCCTTGGTA+TGG 0.506809 8_1:+71933633 Msa1212080:CDS
GTTAAAGATGTGTCTAGGAC+TGG 0.508135 8_1:-71935153 None:intergenic
GGGTTGCATTCCACTTCAAA+GGG 0.512126 8_1:+71935775 Msa1212080:CDS
ATTAGCAATCCCCTTAAGTA+CGG 0.515788 8_1:+71935950 Msa1212080:CDS
AACACTAAGAAGACAACTAA+AGG 0.515883 8_1:+71935565 Msa1212080:CDS
TACTTCATAGTTTAGGAGCA+AGG 0.520215 8_1:+71935723 Msa1212080:CDS
TGAAGTGGAATGCAACCCAT+TGG 0.525340 8_1:-71935770 None:intergenic
AATGATTAATCTTCTGGAGA+TGG 0.526299 8_1:-71936743 None:intergenic
GGAGCAATAGCAGCAGGTGC+TGG 0.537282 8_1:-71936722 None:intergenic
TCTCAGTTAAAGATGTGTCT+AGG 0.537954 8_1:-71935158 None:intergenic
GTCCATGAATCAGTGTAAAG+AGG 0.544547 8_1:-71935506 None:intergenic
AAGCCCAATACCCAAAATGA+TGG 0.546627 8_1:-71933520 None:intergenic
TCCTATCAAGTAATCCATGA+AGG 0.551770 8_1:-71935543 None:intergenic
ATAGCAGCAGGTGCTGGTGA+AGG 0.556239 8_1:-71936716 None:intergenic
GGAGATGGAGCAATAGCAGC+AGG 0.561892 8_1:-71936728 None:intergenic
TGCTGGTCTAATTCTCCCAA+AGG 0.564566 8_1:-71936543 None:intergenic
TCTCTCTAGAAGCCTAGCTC+AGG 0.570010 8_1:+71933614 Msa1212080:CDS
GCCTTGGTATGGTATAGACA+TGG 0.570735 8_1:+71933644 Msa1212080:CDS
GAGCTCATTAGCACTGTCTG+AGG 0.573348 8_1:-71936636 None:intergenic
AAGCGATCTAATAGATGACT+TGG 0.575982 8_1:+71935865 Msa1212080:CDS
GTAGTAAGTACCCTTTGAAG+TGG 0.581219 8_1:-71935785 None:intergenic
AAGGCAAGCTTGCCTGAGCT+AGG 0.591810 8_1:-71933626 None:intergenic
AAAGATGTGTCTAGGACTGG+AGG 0.598576 8_1:-71935150 None:intergenic
AAGATGTGTCTAGGACTGGA+GGG 0.599327 8_1:-71935149 None:intergenic
GATGTGTCTAGGACTGGAGG+GGG 0.601710 8_1:-71935147 None:intergenic
ATCTACTTACCGTACTTAAG+GGG 0.602880 8_1:-71935959 None:intergenic
CCTAATGGAAGGTTCTCCAA+TGG 0.603541 8_1:+71933678 Msa1212080:CDS
ATCAGACAAATTAATTAACA+TGG 0.603890 8_1:+71933467 None:intergenic
TCTGAGCACAGTGTTGATGC+AGG 0.603943 8_1:-71936578 None:intergenic
AGATGTGTCTAGGACTGGAG+GGG 0.611093 8_1:-71935148 None:intergenic
AGCTCATTAGCACTGTCTGA+GGG 0.611771 8_1:-71936635 None:intergenic
TGAATTGCACAACCTTACAA+TGG 0.611882 8_1:-71933551 None:intergenic
CCTTGGTATGGTATAGACAT+GGG 0.621837 8_1:+71933645 Msa1212080:CDS
CATTAGCACTGTCTGAGGGA+TGG 0.633071 8_1:-71936631 None:intergenic
GCAGGTACACATGTAAGTGC+TGG 0.643973 8_1:-71936560 None:intergenic
GTAATGGGTTACCTAATGGA+AGG 0.648858 8_1:+71933667 Msa1212080:CDS
GTGACAGTTTAGGCCTACCT+AGG 0.652728 8_1:+71935124 Msa1212080:CDS
CCCATGTCTATACCATACCA+AGG 0.684296 8_1:-71933645 None:intergenic
GGATTGAACTATGCTTCTGG+TGG 0.704487 8_1:+71935198 Msa1212080:CDS
ATTCTCCCAAAGGAACAACA+GGG 0.755132 8_1:-71936533 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAAGATAATAATTTTTC+GGG + chr8_1:71934613-71934632 Msa1212080:intron 10.0%
!!! TATTAATTTATGATTTTCTT+GGG - chr8_1:71934661-71934680 None:intergenic 10.0%
!!! TTATTAATTTATGATTTTCT+TGG - chr8_1:71934662-71934681 None:intergenic 10.0%
!!! TTGTTTTTTTTTTTTTTTTG+AGG + chr8_1:71935649-71935668 Msa1212080:intron 10.0%
!!! TGTTTTTTTTTTTTTTTTGA+GGG + chr8_1:71935650-71935669 Msa1212080:intron 10.0%
!!! TTCACTAATATTTATTTTAT+CGG + chr8_1:71936343-71936362 Msa1212080:intron 10.0%
!!! ATAAAAATAGATTTTTGTCA+TGG - chr8_1:71933811-71933830 None:intergenic 15.0%
!! AATTAAAATAAGTTGTTTAG+CGG + chr8_1:71933993-71934012 Msa1212080:intron 15.0%
!! AAACTCTTTAAATTAATACT+TGG + chr8_1:71934509-71934528 Msa1212080:intron 15.0%
!!! TCTAAAATAATAAATTTGTC+CGG + chr8_1:71934547-71934566 Msa1212080:intron 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG - chr8_1:71934585-71934604 None:intergenic 15.0%
!! TCTAAATTAATAAATTTCTC+CGG + chr8_1:71934935-71934954 Msa1212080:intron 15.0%
!! CTCTATAAATTAATAATATC+AGG - chr8_1:71934962-71934981 None:intergenic 15.0%
!! AATGAACTTATTAAGAAATT+TGG + chr8_1:71936665-71936684 Msa1212080:CDS 15.0%
!!! TAGGTAATTTTTTCACTTAT+TGG + chr8_1:71933721-71933740 Msa1212080:intron 20.0%
!!! TAACTTCTAAAAATCATGAT+GGG - chr8_1:71934123-71934142 None:intergenic 20.0%
!!! AAAATAGTAAGCTTATGTTT+TGG - chr8_1:71934436-71934455 None:intergenic 20.0%
!! TAAATTAATAATATCAGGAC+CGG - chr8_1:71934957-71934976 None:intergenic 20.0%
!! GAGAAAGATATACTAATAAA+TGG + chr8_1:71935177-71935196 Msa1212080:CDS 20.0%
!!! TACTTGCATTTTTTAATGTA+TGG - chr8_1:71936050-71936069 None:intergenic 20.0%
!! CTCAAATAAAAAATCAAGAT+CGG - chr8_1:71936087-71936106 None:intergenic 20.0%
!! TTTCACCAAATTATCTTTAA+TGG + chr8_1:71936128-71936147 Msa1212080:intron 20.0%
!! TTAAATATGACCAATAGTAA+TGG + chr8_1:71936319-71936338 Msa1212080:intron 20.0%
!! TATTATAGTAGCCATCATTT+TGG + chr8_1:71933509-71933528 Msa1212080:CDS 25.0%
!! ATTATAGTAGCCATCATTTT+GGG + chr8_1:71933510-71933529 Msa1212080:CDS 25.0%
!!! TAATGAAATCTAAGAGCATT+TGG - chr8_1:71933778-71933797 None:intergenic 25.0%
!! AAAGTAAAGTGCTTTATGTT+TGG + chr8_1:71933875-71933894 Msa1212080:intron 25.0%
!! GTAACTTCTAAAAATCATGA+TGG - chr8_1:71934124-71934143 None:intergenic 25.0%
! AATCTACATTAGATTATGAG+AGG + chr8_1:71934166-71934185 Msa1212080:intron 25.0%
! AAATAGTAAGTTGTGTGTTT+AGG - chr8_1:71934316-71934335 None:intergenic 25.0%
! TTACAGTAAATGTAAACAAG+AGG - chr8_1:71934724-71934743 None:intergenic 25.0%
! TCAATAACCTTAAAAAGTCA+GGG - chr8_1:71935020-71935039 None:intergenic 25.0%
! ATCAATAACCTTAAAAAGTC+AGG - chr8_1:71935021-71935040 None:intergenic 25.0%
!! ATAGCAACACTGAAATATTT+TGG + chr8_1:71935298-71935317 Msa1212080:intron 25.0%
!! GTTTGTCTAGTGATAATTTT+TGG - chr8_1:71935352-71935371 None:intergenic 25.0%
!! AAACAAATTGAGTTGTTTCA+AGG + chr8_1:71935368-71935387 Msa1212080:CDS 25.0%
!! AACAAATTGAGTTGTTTCAA+GGG + chr8_1:71935369-71935388 Msa1212080:CDS 25.0%
! GAACTAATTAGAAGCAAAAT+TGG + chr8_1:71935398-71935417 Msa1212080:CDS 25.0%
! TTAGAAGCAAAATTGGAAAA+AGG + chr8_1:71935405-71935424 Msa1212080:CDS 25.0%
! TAGAAGCAAAATTGGAAAAA+GGG + chr8_1:71935406-71935425 Msa1212080:CDS 25.0%
!!! TTTTAGCTACTTCATAGTTT+AGG + chr8_1:71935716-71935735 Msa1212080:intron 25.0%
! GAGATCCATTAAAGATAATT+TGG - chr8_1:71936136-71936155 None:intergenic 25.0%
! ATTCAGCTACAAAATTATCT+AGG + chr8_1:71936408-71936427 Msa1212080:intron 25.0%
!!! CTAATCACATTTGTTTTGTA+GGG + chr8_1:71936492-71936511 Msa1212080:intron 25.0%
AAGGTTGTGCAATTCATATT+TGG + chr8_1:71933558-71933577 Msa1212080:CDS 30.0%
CTTTATGTTTGGACTTTGTT+TGG + chr8_1:71933886-71933905 Msa1212080:intron 30.0%
! AATTTTTCACGACAGACATT+TGG + chr8_1:71934267-71934286 Msa1212080:intron 30.0%
! GGAGATCCCTTTATAATTTT+CGG + chr8_1:71934634-71934653 Msa1212080:intron 30.0%
TTGGGACCGAAAATTATAAA+GGG - chr8_1:71934643-71934662 None:intergenic 30.0%
ATTTCCAATGCATATGAACA+CGG + chr8_1:71934761-71934780 Msa1212080:intron 30.0%
CTAATTTACGTTAAGTCTCA+AGG + chr8_1:71934790-71934809 Msa1212080:intron 30.0%
!! GACTAATTTGCCTTTTTGTT+TGG + chr8_1:71934842-71934861 Msa1212080:intron 30.0%
ACTGTACATACCAAACAAAA+AGG - chr8_1:71934855-71934874 None:intergenic 30.0%
! CATAGATCTTATGCATTTTC+AGG + chr8_1:71935102-71935121 Msa1212080:intron 30.0%
AAAGTTGACACTCACAAAAT+AGG - chr8_1:71935250-71935269 None:intergenic 30.0%
! AACTTTTCTACTGTGTCTTA+AGG + chr8_1:71935264-71935283 Msa1212080:intron 30.0%
! ACTTTTCTACTGTGTCTTAA+GGG + chr8_1:71935265-71935284 Msa1212080:intron 30.0%
AACACTAAGAAGACAACTAA+AGG + chr8_1:71935565-71935584 Msa1212080:CDS 30.0%
! CCAAATCTATAGTTTGAGTT+AGG - chr8_1:71935902-71935921 None:intergenic 30.0%
CCTAACTCAAACTATAGATT+TGG + chr8_1:71935899-71935918 Msa1212080:CDS 30.0%
TATCTACTTACCGTACTTAA+GGG - chr8_1:71935963-71935982 None:intergenic 30.0%
ATATCTACTTACCGTACTTA+AGG - chr8_1:71935964-71935983 None:intergenic 30.0%
ACATGCATGACATGTAATAT+AGG + chr8_1:71936015-71936034 Msa1212080:intron 30.0%
! GTGACAAAAACAAGAGTTTT+AGG + chr8_1:71936265-71936284 Msa1212080:intron 30.0%
!! GTTTTAGGCGCAAATATTTT+TGG + chr8_1:71936280-71936299 Msa1212080:intron 30.0%
ATTAGTGAAGCCATTACTAT+TGG - chr8_1:71936332-71936351 None:intergenic 30.0%
!! AAAACGTGTCACTTAAAAGT+TGG + chr8_1:71936461-71936480 Msa1212080:intron 30.0%
CCTACAAAACAAATGTGATT+AGG - chr8_1:71936494-71936513 None:intergenic 30.0%
!!! CCTAATCACATTTGTTTTGT+AGG + chr8_1:71936491-71936510 Msa1212080:intron 30.0%
! ACAGAAGCAAATATGTGTTT+TGG + chr8_1:71936600-71936619 Msa1212080:CDS 30.0%
! CAGAAGCAAATATGTGTTTT+GGG + chr8_1:71936601-71936620 Msa1212080:CDS 30.0%
! AAATTTGGATTTTCACGTGA+CGG + chr8_1:71936680-71936699 Msa1212080:CDS 30.0%
!! TAGCCATCATTTTGGGTATT+GGG + chr8_1:71933517-71933536 Msa1212080:CDS 35.0%
TGAATTGCACAACCTTACAA+TGG - chr8_1:71933554-71933573 None:intergenic 35.0%
CATATTTGGAGACTCTCTTT+CGG + chr8_1:71933572-71933591 Msa1212080:CDS 35.0%
TATGGTATAGACATGGGTAA+TGG + chr8_1:71933651-71933670 Msa1212080:CDS 35.0%
ATGGTATAGACATGGGTAAT+GGG + chr8_1:71933652-71933671 Msa1212080:CDS 35.0%
! GCATTTGCTAATGAAGTGTT+TGG + chr8_1:71934068-71934087 Msa1212080:intron 35.0%
TTGAGGATGAACAATGAGTT+TGG + chr8_1:71934091-71934110 Msa1212080:intron 35.0%
CTCAAAAGATCATCACATTG+AGG + chr8_1:71934191-71934210 Msa1212080:intron 35.0%
TTTCCACAATAGACAATGTC+CGG + chr8_1:71934391-71934410 Msa1212080:intron 35.0%
!!! TTTTTTACATTGGCCCAAGT+CGG - chr8_1:71934575-71934594 None:intergenic 35.0%
CTTGGGACCGAAAATTATAA+AGG - chr8_1:71934644-71934663 None:intergenic 35.0%
! TGCTGCAACGTAATTTTAAG+AGG + chr8_1:71934815-71934834 Msa1212080:intron 35.0%
! GAATTAGCCCTGACTTTTTA+AGG + chr8_1:71935010-71935029 Msa1212080:intron 35.0%
CTAATTTCAAACCTGTTCAC+AGG - chr8_1:71935058-71935077 None:intergenic 35.0%
TCTCAGTTAAAGATGTGTCT+AGG - chr8_1:71935161-71935180 None:intergenic 35.0%
!! AATGGATTGAACTATGCTTC+TGG + chr8_1:71935195-71935214 Msa1212080:CDS 35.0%
!! GCTCAATATGTTGTTGCTTT+AGG + chr8_1:71935452-71935471 Msa1212080:CDS 35.0%
ATACAATGACGAAACCTTCA+TGG + chr8_1:71935529-71935548 Msa1212080:CDS 35.0%
! ACCTTCATGGATTACTTGAT+AGG + chr8_1:71935542-71935561 Msa1212080:CDS 35.0%
TCCTATCAAGTAATCCATGA+AGG - chr8_1:71935546-71935565 None:intergenic 35.0%
TACTTCATAGTTTAGGAGCA+AGG + chr8_1:71935723-71935742 Msa1212080:CDS 35.0%
!! CAAGGCAATTGATGCTTTTT+GGG + chr8_1:71935741-71935760 Msa1212080:CDS 35.0%
TACACTTTCTCGACAATTTC+CGG - chr8_1:71935813-71935832 None:intergenic 35.0%
AAGCGATCTAATAGATGACT+TGG + chr8_1:71935865-71935884 Msa1212080:CDS 35.0%
ATTAGCAATCCCCTTAAGTA+CGG + chr8_1:71935950-71935969 Msa1212080:CDS 35.0%
ATCTACTTACCGTACTTAAG+GGG - chr8_1:71935962-71935981 None:intergenic 35.0%
AAGTGTCAACAACATGGATT+TGG - chr8_1:71936217-71936236 None:intergenic 35.0%
TTGGTTAAGTGTCAACAACA+TGG - chr8_1:71936223-71936242 None:intergenic 35.0%
!!! TTGTTTTTGTCACAAACCCT+TGG - chr8_1:71936258-71936277 None:intergenic 35.0%
!! GTAGCCATCATTTTGGGTAT+TGG + chr8_1:71933516-71933535 Msa1212080:CDS 40.0%
AAGCCCAATACCCAAAATGA+TGG - chr8_1:71933523-71933542 None:intergenic 40.0%
!!! ATTTTGGGTATTGGGCTTGA+AGG + chr8_1:71933525-71933544 Msa1212080:CDS 40.0%
CCTTGGTATGGTATAGACAT+GGG + chr8_1:71933645-71933664 Msa1212080:CDS 40.0%
!! ATGGGTAATGGGTTACCTAA+TGG + chr8_1:71933663-71933682 Msa1212080:CDS 40.0%
!! GTAATGGGTTACCTAATGGA+AGG + chr8_1:71933667-71933686 Msa1212080:CDS 40.0%
CGCACAGTTGCTGATATAAT+AGG + chr8_1:71933702-71933721 Msa1212080:CDS 40.0%
!! ATTATTTTGTGTCCGAGACG+CGG + chr8_1:71934024-71934043 Msa1212080:intron 40.0%
! GCTAATGAAGTGTTTGGTTG+AGG + chr8_1:71934074-71934093 Msa1212080:intron 40.0%
AGCAATCACACAAGTGAAGT+TGG + chr8_1:71934218-71934237 Msa1212080:intron 40.0%
! TTTTCACGACAGACATTTGG+CGG + chr8_1:71934270-71934289 Msa1212080:intron 40.0%
!! TTTTGGAGAGATTCGCTTAC+CGG - chr8_1:71934419-71934438 None:intergenic 40.0%
! TTTTTACATTGGCCCAAGTC+GGG - chr8_1:71934574-71934593 None:intergenic 40.0%
ACTACCGTGTTCATATGCAT+TGG - chr8_1:71934768-71934787 None:intergenic 40.0%
TTGTGAATCAACCTGTGAAC+AGG + chr8_1:71935044-71935063 Msa1212080:intron 40.0%
!!! GCATTTTCAGGTGACAGTTT+AGG + chr8_1:71935114-71935133 Msa1212080:intron 40.0%
! GTTAAAGATGTGTCTAGGAC+TGG - chr8_1:71935156-71935175 None:intergenic 40.0%
CAAAATTGGAAAAAGGGCTG+CGG + chr8_1:71935412-71935431 Msa1212080:CDS 40.0%
!! TGCCTCTTTACACTGATTCA+TGG + chr8_1:71935504-71935523 Msa1212080:CDS 40.0%
GTCCATGAATCAGTGTAAAG+AGG - chr8_1:71935509-71935528 None:intergenic 40.0%
! GCAAGGCAATTGATGCTTTT+TGG + chr8_1:71935740-71935759 Msa1212080:CDS 40.0%
!! CAATTGATGCTTTTTGGGCT+GGG + chr8_1:71935746-71935765 Msa1212080:CDS 40.0%
! GTAGTAAGTACCCTTTGAAG+TGG - chr8_1:71935788-71935807 None:intergenic 40.0%
!! CAAAGGGTACTTACTACAAC+CGG + chr8_1:71935791-71935810 Msa1212080:CDS 40.0%
ACCAAATGATGCTCATACCA+AGG + chr8_1:71936238-71936257 Msa1212080:intron 40.0%
CCAAATGATGCTCATACCAA+GGG + chr8_1:71936239-71936258 Msa1212080:intron 40.0%
ATTCTCCCAAAGGAACAACA+GGG - chr8_1:71936536-71936555 None:intergenic 40.0%
AATTCTCCCAAAGGAACAAC+AGG - chr8_1:71936537-71936556 None:intergenic 40.0%
GCTTGAAGGAAGCCATTGTA+AGG + chr8_1:71933539-71933558 Msa1212080:CDS 45.0%
GCCTTGGTATGGTATAGACA+TGG + chr8_1:71933644-71933663 Msa1212080:CDS 45.0%
CCCATGTCTATACCATACCA+AGG - chr8_1:71933648-71933667 None:intergenic 45.0%
CCATTGGAGAACCTTCCATT+AGG - chr8_1:71933681-71933700 None:intergenic 45.0%
CCTAATGGAAGGTTCTCCAA+TGG + chr8_1:71933678-71933697 Msa1212080:CDS 45.0%
TTTGGAGAGATTCGCTTACC+GGG - chr8_1:71934418-71934437 None:intergenic 45.0%
! AAGATGTGTCTAGGACTGGA+GGG - chr8_1:71935152-71935171 None:intergenic 45.0%
! AAAGATGTGTCTAGGACTGG+AGG - chr8_1:71935153-71935172 None:intergenic 45.0%
GGATTGAACTATGCTTCTGG+TGG + chr8_1:71935198-71935217 Msa1212080:CDS 45.0%
TTGAACTATGCTTCTGGTGG+TGG + chr8_1:71935201-71935220 Msa1212080:CDS 45.0%
GGCGGTATCTTGAATGAAAC+TGG + chr8_1:71935222-71935241 Msa1212080:CDS 45.0%
!! GCAATTGATGCTTTTTGGGC+TGG + chr8_1:71935745-71935764 Msa1212080:CDS 45.0%
TGAAGTGGAATGCAACCCAT+TGG - chr8_1:71935773-71935792 None:intergenic 45.0%
TGGGTTGCATTCCACTTCAA+AGG + chr8_1:71935774-71935793 Msa1212080:CDS 45.0%
GGGTTGCATTCCACTTCAAA+GGG + chr8_1:71935775-71935794 Msa1212080:CDS 45.0%
CCCTTGGTATGAGCATCATT+TGG - chr8_1:71936242-71936261 None:intergenic 45.0%
! AACAGGGTGAGTCTGAGTTT+TGG - chr8_1:71936520-71936539 None:intergenic 45.0%
ACTCACCCTGTTGTTCCTTT+GGG + chr8_1:71936528-71936547 Msa1212080:CDS 45.0%
! TGCTGGTCTAATTCTCCCAA+AGG - chr8_1:71936546-71936565 None:intergenic 45.0%
AGCTCATTAGCACTGTCTGA+GGG - chr8_1:71936638-71936657 None:intergenic 45.0%
!!! ATAATAAGATAATAATTTTT+CGG + chr8_1:71934612-71934631 Msa1212080:intron 5.0%
!!! ATATTTAAAATATAAATTTC+GGG - chr8_1:71936307-71936326 None:intergenic 5.0%
!!! CATATTTAAAATATAAATTT+CGG - chr8_1:71936308-71936327 None:intergenic 5.0%
GGAGACTCTCTTTCGGATGT+TGG + chr8_1:71933579-71933598 Msa1212080:CDS 50.0%
! TCTCTCTAGAAGCCTAGCTC+AGG + chr8_1:71933614-71933633 Msa1212080:CDS 50.0%
ATCAGCAACTGTGCGTCCAT+TGG - chr8_1:71933697-71933716 None:intergenic 50.0%
GGACCGGACATTGTCTATTG+TGG - chr8_1:71934397-71934416 None:intergenic 50.0%
CAATAGACAATGTCCGGTCC+CGG + chr8_1:71934397-71934416 Msa1212080:intron 50.0%
AAATTTGTCCGGTCCCGACT+TGG + chr8_1:71934558-71934577 Msa1212080:intron 50.0%
AATTTGTCCGGTCCCGACTT+GGG + chr8_1:71934559-71934578 Msa1212080:intron 50.0%
GTGACAGTTTAGGCCTACCT+AGG + chr8_1:71935124-71935143 Msa1212080:CDS 50.0%
! AGATGTGTCTAGGACTGGAG+GGG - chr8_1:71935151-71935170 None:intergenic 50.0%
!! AACTATGCTTCTGGTGGTGG+CGG + chr8_1:71935204-71935223 Msa1212080:CDS 50.0%
!! CTTTTTGGGCTGGGTCCAAT+GGG + chr8_1:71935755-71935774 Msa1212080:CDS 50.0%
GACTCACCCTGTTGTTCCTT+TGG + chr8_1:71936527-71936546 Msa1212080:CDS 50.0%
GCAGGTACACATGTAAGTGC+TGG - chr8_1:71936563-71936582 None:intergenic 50.0%
!! TCTGAGCACAGTGTTGATGC+AGG - chr8_1:71936581-71936600 None:intergenic 50.0%
CATTAGCACTGTCTGAGGGA+TGG - chr8_1:71936634-71936653 None:intergenic 50.0%
GAGCTCATTAGCACTGTCTG+AGG - chr8_1:71936639-71936658 None:intergenic 50.0%
AAGGCAAGCTTGCCTGAGCT+AGG - chr8_1:71933629-71933648 None:intergenic 55.0%
TAGCTCAGGCAAGCTTGCCT+TGG + chr8_1:71933628-71933647 Msa1212080:CDS 55.0%
CAGGCAAGCTTGCCTTGGTA+TGG + chr8_1:71933633-71933652 Msa1212080:CDS 55.0%
GCTTCTCAATTGCCGCGTCT+CGG - chr8_1:71934039-71934058 None:intergenic 55.0%
AGAGATTCGCTTACCGGGAC+CGG - chr8_1:71934413-71934432 None:intergenic 55.0%
! GATGTGTCTAGGACTGGAGG+GGG - chr8_1:71935150-71935169 None:intergenic 55.0%
!! GCTTTTTGGGCTGGGTCCAA+TGG + chr8_1:71935754-71935773 Msa1212080:CDS 55.0%
!! ATAGCAGCAGGTGCTGGTGA+AGG - chr8_1:71936719-71936738 None:intergenic 55.0%
GGAGATGGAGCAATAGCAGC+AGG - chr8_1:71936731-71936750 None:intergenic 55.0%
ACATTGGCCCAAGTCGGGAC+CGG - chr8_1:71934569-71934588 None:intergenic 60.0%
GGAGCAATAGCAGCAGGTGC+TGG - chr8_1:71936725-71936744 None:intergenic 60.0%
! TCTAGGACTGGAGGGGGCCT+AGG - chr8_1:71935144-71935163 None:intergenic 65.0%
GGACTGGAGGGGGCCTAGGT+AGG - chr8_1:71935140-71935159 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 71933482 71936760 71933482 ID=Msa1212080;Name=Msa1212080
chr8_1 mRNA 71933482 71936760 71933482 ID=Msa1212080-mRNA-1;Parent=Msa1212080;Name=Msa1212080-mRNA-1;_AED=0.13;_eAED=0.13;_QI=4|1|0.8|1|1|1|5|0|368
chr8_1 exon 71933482 71933723 71933482 ID=Msa1212080-mRNA-1:exon:24241;Parent=Msa1212080-mRNA-1
chr8_1 exon 71935124 71935254 71935124 ID=Msa1212080-mRNA-1:exon:24242;Parent=Msa1212080-mRNA-1
chr8_1 exon 71935347 71935586 71935347 ID=Msa1212080-mRNA-1:exon:24243;Parent=Msa1212080-mRNA-1
chr8_1 exon 71935722 71935971 71935722 ID=Msa1212080-mRNA-1:exon:24244;Parent=Msa1212080-mRNA-1
chr8_1 exon 71936513 71936760 71936513 ID=Msa1212080-mRNA-1:exon:24245;Parent=Msa1212080-mRNA-1
chr8_1 five_prime_UTR 71933482 71933485 71933482 ID=Msa1212080-mRNA-1:five_prime_utr;Parent=Msa1212080-mRNA-1
chr8_1 CDS 71933486 71933723 71933486 ID=Msa1212080-mRNA-1:cds;Parent=Msa1212080-mRNA-1
chr8_1 CDS 71935124 71935254 71935124 ID=Msa1212080-mRNA-1:cds;Parent=Msa1212080-mRNA-1
chr8_1 CDS 71935347 71935586 71935347 ID=Msa1212080-mRNA-1:cds;Parent=Msa1212080-mRNA-1
chr8_1 CDS 71935722 71935971 71935722 ID=Msa1212080-mRNA-1:cds;Parent=Msa1212080-mRNA-1
chr8_1 CDS 71936513 71936760 71936513 ID=Msa1212080-mRNA-1:cds;Parent=Msa1212080-mRNA-1
Gene Sequence

>Msa1212080

ATGGAGTTTAGTAAGGTGATAGTTATTATAGTAGCCATCATTTTGGGTATTGGGCTTGAAGGAAGCCATTGTAAGGTTGTGCAATTCATATTTGGAGACTCTCTTTCGGATGTTGGAAACAACATGCATCTCTCTAGAAGCCTAGCTCAGGCAAGCTTGCCTTGGTATGGTATAGACATGGGTAATGGGTTACCTAATGGAAGGTTCTCCAATGGACGCACAGTTGCTGATATAATAGGTGACAGTTTAGGCCTACCTAGGCCCCCTCCAGTCCTAGACACATCTTTAACTGAGAAAGATATACTAATAAATGGATTGAACTATGCTTCTGGTGGTGGCGGTATCTTGAATGAAACTGGCACCTATTTTATCCAAAAATTATCACTAGACAAACAAATTGAGTTGTTTCAAGGGACACAAGAACTAATTAGAAGCAAAATTGGAAAAAGGGCTGCGGACAAATTCTTTAGAGAAGCTCAATATGTTGTTGCTTTAGGTAGTAATGACTTTATCAACAACTACTTGATGCCTCTTTACACTGATTCATGGACATACAATGACGAAACCTTCATGGATTACTTGATAGGAACACTAAGAAGACAACTAAAGCTACTTCATAGTTTAGGAGCAAGGCAATTGATGCTTTTTGGGCTGGGTCCAATGGGTTGCATTCCACTTCAAAGGGTACTTACTACAACCGGAAATTGTCGAGAAAGTGTAAACAAACTAGCTCTTAGCTTTAATAAAGCTTCAAGCGATCTAATAGATGACTTGGTGAAGCAACTTCCTAACTCAAACTATAGATTTGGAGATGCATATGATGTTGTCTCTGATTTGATTAGCAATCCCCTTAAGTACGGGTTCCAAAACTCAGACTCACCCTGTTGTTCCTTTGGGAGAATTAGACCAGCACTTACATGTGTACCTGCATCAACACTGTGCTCAGACAGAAGCAAATATGTGTTTTGGGACGAGTACCATCCCTCAGACAGTGCTAATGAGCTCATTGCAAATGAACTTATTAAGAAATTTGGATTTTCACGTGACGGTCAAAATGCTGCTCCTTCACCAGCACCTGCTGCTATTGCTCCATCTCCAGAAGATTAA

Protein sequence

>Msa1212080

MEFSKVIVIIVAIILGIGLEGSHCKVVQFIFGDSLSDVGNNMHLSRSLAQASLPWYGIDMGNGLPNGRFSNGRTVADIIGDSLGLPRPPPVLDTSLTEKDILINGLNYASGGGGILNETGTYFIQKLSLDKQIELFQGTQELIRSKIGKRAADKFFREAQYVVALGSNDFINNYLMPLYTDSWTYNDETFMDYLIGTLRRQLKLLHSLGARQLMLFGLGPMGCIPLQRVLTTTGNCRESVNKLALSFNKASSDLIDDLVKQLPNSNYRFGDAYDVVSDLISNPLKYGFQNSDSPCCSFGRIRPALTCVPASTLCSDRSKYVFWDEYHPSDSANELIANELIKKFGFSRDGQNAAPSPAPAAIAPSPED*