AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0724300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0724300 MtrunA17_Chr2g0285481 62.654 324 115 4 2 321 1 322 4.89e-143 406
Msa0724300 MtrunA17_Chr1g0172741 62.037 324 117 4 2 321 1 322 1.45e-141 403
Msa0724300 MtrunA17_Chr8g0334551 56.707 328 135 2 1 321 1 328 2.97e-129 372
Msa0724300 MtrunA17_Chr2g0321391 67.213 244 77 2 79 321 3 244 1.24e-116 337
Msa0724300 MtrunA17_Chr5g0422701 65.174 201 67 2 122 321 14 212 1.09e-87 262
Msa0724300 MtrunA17_Chr2g0295811 41.176 221 112 6 119 321 10 230 5.91e-44 150
Msa0724300 MtrunA17_Chr5g0422691 61.957 92 34 1 13 103 14 105 1.03e-34 122
Msa0724300 MtrunA17_Chr2g0295611 62.500 96 35 1 100 194 1 96 2.94e-33 118
Msa0724300 MtrunA17_Chr8g0362511 28.803 309 185 9 21 310 67 359 2.00e-26 107
Msa0724300 MtrunA17_Chr5g0402821 28.797 316 195 9 22 315 16 323 4.29e-26 105
Msa0724300 MtrunA17_Chr3g0113081 37.500 152 86 2 22 173 185 327 1.85e-24 103
Msa0724300 MtrunA17_Chr3g0113081 28.155 309 160 8 12 311 373 628 3.00e-24 103
Msa0724300 MtrunA17_Chr3g0113081 35.821 134 79 2 11 144 3 129 2.46e-17 82.8
Msa0724300 MtrunA17_Chr5g0405761 28.428 299 184 7 19 312 47 320 2.29e-24 101
Msa0724300 MtrunA17_Chr6g0469501 63.793 58 21 0 264 321 1 58 7.98e-22 87.0
Msa0724300 MtrunA17_Chr1g0176881 29.412 136 95 1 21 156 21 155 3.04e-15 76.6
Msa0724300 MtrunA17_Chr1g0176881 28.966 145 100 2 2 146 175 316 1.47e-14 74.3
Msa0724300 MtrunA17_Chr8g0360271 25.256 293 183 11 33 310 21 292 7.43e-15 73.9
Msa0724300 MtrunA17_Chr1g0156481 22.772 303 204 8 19 311 12 294 3.87e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0724300 AT5G05800.1 25.237 317 212 6 6 322 156 447 7.62e-24 101
Msa0724300 AT5G05800.1 35.135 111 71 1 20 130 2 111 1.64e-15 77.4
Msa0724300 AT5G05800.5 25.237 317 212 6 6 322 156 447 7.62e-24 101
Msa0724300 AT5G05800.5 35.135 111 71 1 20 130 2 111 1.64e-15 77.4
Msa0724300 AT5G05800.3 25.237 317 212 6 6 322 156 447 7.62e-24 101
Msa0724300 AT5G05800.3 35.135 111 71 1 20 130 2 111 1.64e-15 77.4
Msa0724300 AT5G05800.2 25.237 317 212 6 6 322 156 447 7.62e-24 101
Msa0724300 AT5G05800.2 35.135 111 71 1 20 130 2 111 1.64e-15 77.4
Msa0724300 AT5G05800.4 25.237 317 212 6 6 322 156 447 7.62e-24 101
Msa0724300 AT5G05800.4 35.135 111 71 1 20 130 2 111 1.64e-15 77.4
Msa0724300 AT3G11290.2 25.566 309 189 8 20 310 163 448 8.48e-19 87.0
Msa0724300 AT3G11290.1 25.566 309 189 8 20 310 163 448 8.48e-19 87.0
Msa0724300 AT2G24960.1 28.467 137 97 1 8 144 155 290 1.56e-14 75.1
Msa0724300 AT2G24960.2 28.467 137 97 1 8 144 155 290 1.86e-14 74.7
Msa0724300 AT2G24960.2 27.273 143 103 1 12 154 314 455 3.98e-11 64.7
Msa0724300 AT3G11310.1 33.566 143 89 2 20 157 171 312 4.42e-13 70.1
Msa0724300 AT2G19220.1 26.019 319 198 12 9 317 149 439 2.75e-11 64.7
Msa0724300 AT4G02210.1 27.673 159 113 2 13 170 2 159 5.75e-11 63.5
Msa0724300 AT4G02210.2 27.673 159 113 2 13 170 2 159 5.75e-11 63.5

Find 145 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGCATGGTATAACTTATT+TGG 0.134716 5_1:+22603845 Msa0724300:CDS
ACAACTGAATTTGGAAATAT+TGG 0.148866 5_1:+22604248 Msa0724300:CDS
ATCGAGCCATTGCTAGATTT+TGG 0.154404 5_1:-22602100 Msa0724290:CDS
TACAAATGACTTAAAGCTTT+TGG 0.189237 5_1:-22602375 Msa0724290:CDS
GTTGGAGCAACAACTGAATT+TGG 0.213211 5_1:+22604239 Msa0724300:CDS
TTTCTTTCATATAACTTAAA+AGG 0.224459 5_1:-22602490 Msa0724290:five_prime_UTR
TTGAATATATTGATGAAGTT+TGG 0.240973 5_1:-22602166 Msa0724290:CDS
AGGGTTAAAGAGAAATTTAC+TGG 0.266113 5_1:-22600977 Msa0724290:CDS
CTGAAGAAACAAATCACTTT+TGG 0.266212 5_1:+22602262 Msa0724300:five_prime_UTR
GGCAGAAAACAAAAGCTAAT+TGG 0.275009 5_1:+22603636 Msa0724300:CDS
AACTTATTTGGGAGAGAAAC+TGG 0.287945 5_1:+22603857 Msa0724300:CDS
TTGGGAGAGAAACTGGATTA+GGG 0.298488 5_1:+22603864 Msa0724300:CDS
GGATTTGTTGATATTGCTTT+TGG 0.299556 5_1:-22601019 Msa0724290:CDS
TGCCCTTTCAATCAAAGGTT+TGG 0.302670 5_1:-22602315 Msa0724290:CDS
AAACTCCTGCTTTGGTGAAA+TGG 0.308703 5_1:-22600931 Msa0724290:CDS
TTTGGGAGAGAAACTGGATT+AGG 0.315464 5_1:+22603863 Msa0724300:CDS
GAAATAAACATCTCCCTTGC+AGG 0.323302 5_1:-22604539 None:intergenic
TATCCTACACTGCTGCTATA+TGG 0.329866 5_1:-22603069 None:intergenic
AAACTTTGTGAAAGCATGTT+TGG 0.334075 5_1:+22603676 Msa0724300:CDS
ATATGTTCAAAAGCACTTTC+AGG 0.348875 5_1:+22602606 Msa0724300:five_prime_UTR
AAAATCCCAGTTCTCATTCA+TGG 0.351236 5_1:-22602221 Msa0724290:CDS
GTCCGGTTAAATTATGAAAT+CGG 0.352053 5_1:-22603766 None:intergenic
TGTATTACATACCAGTTGTT+TGG 0.352266 5_1:-22603936 None:intergenic
CAACTGAATTTGGAAATATT+GGG 0.356640 5_1:+22604249 Msa0724300:CDS
AAAAGCACTTTCAGGATGTT+TGG 0.359338 5_1:+22602614 Msa0724300:five_prime_UTR
GAGCATGGTATAACTTATTT+GGG 0.363157 5_1:+22603846 Msa0724300:CDS
TTCAAGGATGTAGTGGCTAA+TGG 0.366838 5_1:+22604098 Msa0724300:CDS
CAGAGGAGAAGAGGTTGAAT+TGG 0.373243 5_1:+22604573 Msa0724300:CDS
GTCCGATTTCATAATTTAAC+CGG 0.374307 5_1:+22603764 Msa0724300:CDS
TAAAGTATATAGTGCGTGTT+TGG 0.394130 5_1:+22602552 Msa0724300:five_prime_UTR
TTATCTCCATGAATGAGAAC+TGG 0.409182 5_1:+22602215 Msa0724300:five_prime_UTR
AACTCCTGCTTTGGTGAAAT+GGG 0.410113 5_1:-22600930 Msa0724290:CDS
TTGGTCTCCCACCACTCATC+AGG 0.410369 5_1:-22603917 None:intergenic
GCAGAAAACAAAAGCTAATT+GGG 0.414370 5_1:+22603637 Msa0724300:CDS
GTTCCTCCTCACCTAGTGAT+GGG 0.415978 5_1:+22603612 Msa0724300:CDS
GAAAAGTGTGGTTAACTCAT+TGG 0.420206 5_1:-22604078 None:intergenic
ATTTGTGCCCTCACTGCAAA+TGG 0.420611 5_1:+22602338 Msa0724300:five_prime_UTR
AATCCAAACCTTTGATTGAA+AGG 0.422743 5_1:+22602312 Msa0724300:five_prime_UTR
AAAAGGGTGGACAAATATTA+GGG 0.422862 5_1:+22603742 Msa0724300:CDS
ATCCAAACCTTTGATTGAAA+GGG 0.436790 5_1:+22602313 Msa0724300:five_prime_UTR
GGTTCCTCCTCACCTAGTGA+TGG 0.438340 5_1:+22603611 Msa0724300:CDS
CAAATTGCCCTTTCAATCAA+AGG 0.440999 5_1:-22602320 Msa0724290:CDS
CCTGTGTGACTAGGATGTAA+TGG 0.449794 5_1:+22604637 Msa0724300:exon
ACAAATCGATTTCCTACCTC+AGG 0.453660 5_1:+22602717 Msa0724300:five_prime_UTR
CTGTACAATTCCCTACGAAA+TGG 0.454126 5_1:-22601169 Msa0724290:CDS
GTTGAGAGATAATAGATTTG+CGG 0.457069 5_1:+22602518 Msa0724300:five_prime_UTR
GTTCAGTCCATTTGCAGTGA+GGG 0.459556 5_1:-22602345 Msa0724290:CDS
AAACGCAAGGCGGCGGCAGA+AGG 0.461299 5_1:-22602648 None:intergenic
GAAAACTTCTTTATATATGT+TGG 0.464801 5_1:+22602984 Msa0724300:five_prime_UTR
AGCAGAAGTGCTTGTGAGGT+TGG 0.466597 5_1:-22601098 Msa0724290:CDS
ACTGCTGCTATATGGAACTT+TGG 0.469157 5_1:-22603061 None:intergenic
TCCATCGCACACTTAAGAAA+AGG 0.473966 5_1:+22603027 Msa0724300:five_prime_UTR
TTCCTCCTCACCTAGTGATG+GGG 0.476214 5_1:+22603613 Msa0724300:CDS
TGAAGCTAAAACTCCTGCTT+TGG 0.478097 5_1:-22600939 Msa0724290:CDS
TATTATTGCAGATTCACAAA+TGG 0.479491 5_1:+22602190 Msa0724300:five_prime_UTR
AGAAGGCTCAACTAAAGAAT+AGG 0.479515 5_1:+22603798 Msa0724300:CDS
GCATTTGAAGGAAGGAAGGA+GGG 0.483917 5_1:+22602128 Msa0724300:five_prime_UTR
TCCTCCTCACCTAGTGATGG+GGG 0.484199 5_1:+22603614 Msa0724300:CDS
CAGCAGTGTAGGATACTTCA+AGG 0.485687 5_1:+22603077 Msa0724300:five_prime_UTR
AGTCATTTGTAGCCATCGCT+TGG 0.490420 5_1:+22602387 Msa0724300:five_prime_UTR
AGCAAATAAACCATTTCGTA+GGG 0.493313 5_1:+22601159 Msa0724300:five_prime_UTR
TCAGCCCATTTCACCAAAGC+AGG 0.493696 5_1:+22600926 Msa0724300:five_prime_UTR
GCTGCGGGTAATGCATCTAT+TGG 0.495551 5_1:+22604428 Msa0724300:CDS
CTGTGTGACTAGGATGTAAT+GGG 0.496381 5_1:+22604638 Msa0724300:exon
ATGCTATTTGAGTTGGTTGA+GGG 0.498921 5_1:-22600996 Msa0724290:CDS
GATGAGGCAGTGGCTGTAGA+AGG 0.502147 5_1:+22604191 Msa0724300:CDS
AGCCTTCTCATACTTCAGTC+CGG 0.504703 5_1:-22603783 None:intergenic
CGTACTAACACGTTCTCCCT+TGG 0.505137 5_1:-22603708 None:intergenic
GAGCAAATAAACCATTTCGT+AGG 0.505314 5_1:+22601158 Msa0724300:five_prime_UTR
AGGCGGCGGCAGAAGGGTGA+TGG 0.511418 5_1:-22602641 None:intergenic
GATGCTATTTGAGTTGGTTG+AGG 0.515089 5_1:-22600997 Msa0724290:CDS
TGCTGATGTTTAAGCCTGCA+AGG 0.517021 5_1:+22604525 Msa0724300:CDS
AGAGAAATTTACTGGAGAGA+AGG 0.518055 5_1:-22600969 Msa0724290:CDS
TGGCTAATGGAGAGTACACT+TGG 0.522261 5_1:+22604111 Msa0724300:CDS
TTCTTCTTGAAGGACTAGAC+AGG 0.522752 5_1:+22602454 Msa0724300:five_prime_UTR
GCAGTGGCTGTAGAAGGATC+TGG 0.527670 5_1:+22604197 Msa0724300:CDS
GCTCGATCATAAGCATTTGA+AGG 0.528885 5_1:+22602116 Msa0724300:five_prime_UTR
TAATACCTTGTCATCGATGT+AGG 0.530847 5_1:+22602073 Msa0724300:intron
ATGACAGTCTGAGAAAGGAT+TGG 0.531322 5_1:+22603822 Msa0724300:CDS
CTTCTCCTCTGAACCTCGTA+GGG 0.535159 5_1:-22604561 None:intergenic
GTGGTGGGAGACCAAACAAC+TGG 0.536532 5_1:+22603925 Msa0724300:CDS
GATGTAATGGGAATTAAGCT+AGG 0.537206 5_1:+22604650 Msa0724300:three_prime_UTR
AGGTTAGTCATGAACGGCAG+TGG 0.537233 5_1:-22604617 None:intergenic
TAGGTATGACAGTCTGAGAA+AGG 0.543958 5_1:+22603817 Msa0724300:CDS
GATCATAAGCATTTGAAGGA+AGG 0.555225 5_1:+22602120 Msa0724300:five_prime_UTR
TATTTCCCTACGAGGTTCAG+AGG 0.555424 5_1:+22604556 Msa0724300:CDS
GGAGAGAAACTGGATTAGGG+TGG 0.557144 5_1:+22603867 Msa0724300:CDS
ATCATTTGAGACTTCATCCA+TGG 0.558263 5_1:-22604474 None:intergenic
AGTTGTCAAACGCAAGGCGG+CGG 0.560661 5_1:-22602655 None:intergenic
GTCAAAAGAGTGGTGAGAAG+AGG 0.562252 5_1:+22604297 Msa0724300:CDS
CATGACTAACCTGTGTGACT+AGG 0.562786 5_1:+22604628 Msa0724300:CDS
GAACAAGAGCAGTGGAGGAA+AGG 0.563848 5_1:-22601065 Msa0724290:CDS
TACGAGGTTCAGAGGAGAAG+AGG 0.567800 5_1:+22604564 Msa0724300:CDS
CGTTCTCGCAATGATGCTGC+GGG 0.569360 5_1:+22604413 Msa0724300:CDS
ATGTTTGGAGCAAGTCTCCA+AGG 0.570714 5_1:+22603691 Msa0724300:CDS
TATCTCCATGAATGAGAACT+GGG 0.572303 5_1:+22602216 Msa0724300:five_prime_UTR
TACACTTGGGCACCATCATG+TGG 0.573130 5_1:+22604125 Msa0724300:CDS
ATAGTGCGTGTTTGGTTACA+CGG 0.576581 5_1:+22602560 Msa0724300:five_prime_UTR
GTTCCATATAGCAGCAGTGT+AGG 0.580402 5_1:+22603066 Msa0724300:five_prime_UTR
TCGTTCTCGCAATGATGCTG+CGG 0.583184 5_1:+22604412 Msa0724300:CDS
ATAAGCATTTGAAGGAAGGA+AGG 0.584492 5_1:+22602124 Msa0724300:five_prime_UTR
TGCATCTATTGGTGAAGTGA+TGG 0.591393 5_1:+22604439 Msa0724300:CDS
GGTTCAGTCCATTTGCAGTG+AGG 0.592150 5_1:-22602346 Msa0724290:CDS
ATTTCAAGTTGTCAAACGCA+AGG 0.594210 5_1:-22602661 None:intergenic
GCTGATGTTTAAGCCTGCAA+GGG 0.594722 5_1:+22604526 Msa0724300:CDS
AACGCAAGGCGGCGGCAGAA+GGG 0.594903 5_1:-22602647 None:intergenic
TCTTCTCCTCTGAACCTCGT+AGG 0.595412 5_1:-22604562 None:intergenic
ATATTTCTGATTCCAAGCGA+TGG 0.596039 5_1:-22602399 Msa0724290:exon
GAAATCGATTTGTAGAAGCT+AGG 0.597207 5_1:-22602707 None:intergenic
GATAGCGAGGATGCAAGTGT+TGG 0.599986 5_1:+22604221 Msa0724300:CDS
GATGGCAATACCCCACATGA+TGG 0.601622 5_1:-22604137 None:intergenic
AGCATTTGAAGGAAGGAAGG+AGG 0.601695 5_1:+22602127 Msa0724300:five_prime_UTR
CCTCCTCACCTAGTGATGGG+GGG 0.608278 5_1:+22603615 Msa0724300:CDS
TGAGAAAGGATTGGAGAGCA+TGG 0.612846 5_1:+22603831 Msa0724300:CDS
GCTACAACAGTGTTGTTCAC+AGG 0.614063 5_1:-22603893 None:intergenic
AGAGATAATAGATTTGCGGT+AGG 0.617096 5_1:+22602522 Msa0724300:five_prime_UTR
GTGGTTAACTCATTGGCGAA+TGG 0.617203 5_1:-22604071 None:intergenic
AGAAGGATCTGGCGATAGCG+AGG 0.624952 5_1:+22604208 Msa0724300:CDS
GTATTGAACAAGAGCAGTGG+AGG 0.626763 5_1:-22601070 Msa0724290:CDS
AACCGGACTGAAGTATGAGA+AGG 0.626830 5_1:+22603781 Msa0724300:CDS
ACACTTGGGCACCATCATGT+GGG 0.626839 5_1:+22604126 Msa0724300:CDS
CACTACATCCTTGAAAAGTG+TGG 0.627204 5_1:-22604090 None:intergenic
GGAGAACCCAAACCTGAGGT+AGG 0.628351 5_1:-22602729 None:intergenic
GGTTAGTCATGAACGGCAGT+GGG 0.628971 5_1:-22604616 None:intergenic
AAAACTGATGGTCAAAAGAG+TGG 0.632803 5_1:+22604287 Msa0724300:CDS
TTGTAGCACCTGATGAGTGG+TGG 0.632872 5_1:+22603909 Msa0724300:CDS
GTGCGATGGAATAACAGAGT+GGG 0.634801 5_1:-22603014 None:intergenic
TCACACAGGTTAGTCATGAA+CGG 0.640237 5_1:-22604623 None:intergenic
GGTAGCCCAAAATCTAGCAA+TGG 0.641759 5_1:+22602094 Msa0724300:five_prime_UTR
CCATTACATCCTAGTCACAC+AGG 0.643132 5_1:-22604637 None:intergenic
GAGAGAAACTGGATTAGGGT+GGG 0.643865 5_1:+22603868 Msa0724300:CDS
AACTAGCAGAAGTGCTTGTG+AGG 0.644124 5_1:-22601102 Msa0724290:CDS
CACTTGGGCACCATCATGTG+GGG 0.646121 5_1:+22604127 Msa0724300:CDS
TCGCACACTTAAGAAAAGGA+AGG 0.646944 5_1:+22603031 Msa0724300:five_prime_UTR
TGTTTGGAGCAAGTCTCCAA+GGG 0.647436 5_1:+22603692 Msa0724300:CDS
TGTAGCACCTGATGAGTGGT+GGG 0.651018 5_1:+22603910 Msa0724300:CDS
GATGTATTGAACAAGAGCAG+TGG 0.660264 5_1:-22601073 Msa0724290:CDS
GGCTACCTACATCGATGACA+AGG 0.662536 5_1:-22602078 Msa0724290:intron
GATGGCTGAGCTTCACACCA+TGG 0.663371 5_1:+22604457 Msa0724300:CDS
TCAAGTTGTCAAACGCAAGG+CGG 0.684144 5_1:-22602658 None:intergenic
GGCTAATGGAGAGTACACTT+GGG 0.684848 5_1:+22604112 Msa0724300:CDS
CTGTTGTAGCACCTGATGAG+TGG 0.705267 5_1:+22603906 Msa0724300:CDS
GAGATGTTTATTTCCCTACG+AGG 0.736446 5_1:+22604548 Msa0724300:CDS
TGTGCGATGGAATAACAGAG+TGG 0.747032 5_1:-22603015 None:intergenic
GTGCGTGTTTGGTTACACGG+TGG 0.747661 5_1:+22602563 Msa0724300:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAATTTTTATTTTTTT+TGG - chr5_1:22601973-22601992 Msa0724290:intron 0.0%
!!! TTTATTATTGTTTTTTTTAC+AGG - chr5_1:22601907-22601926 Msa0724290:intron 10.0%
!! AAATTAAAAACCAATATATT+TGG + chr5_1:22601983-22602002 Msa0724300:intron 10.0%
!!! GTTTAATAAATTTAAGATTT+AGG - chr5_1:22602921-22602940 None:intergenic 10.0%
!! ATAAAATCAATTATTCTACA+CGG - chr5_1:22601801-22601820 Msa0724290:intron 15.0%
!! TTTCTTTCATATAACTTAAA+AGG - chr5_1:22602493-22602512 Msa0724290:five_prime_UTR 15.0%
!!! ATAACAATAGTTCTTTATTT+AGG - chr5_1:22603174-22603193 None:intergenic 15.0%
!!! TGTGATGAAATTTTAACATA+AGG - chr5_1:22601270-22601289 Msa0724290:intron 20.0%
!! CTAAAGAATAAATCCTAAAT+TGG - chr5_1:22601577-22601596 Msa0724290:intron 20.0%
!!! CAATTTAGGATTTATTCTTT+AGG + chr5_1:22601575-22601594 Msa0724300:intron 20.0%
!! TAAACCAAATATTTGTATTC+TGG - chr5_1:22601621-22601640 Msa0724290:intron 20.0%
!! CAACCTTTAATTATATTAGA+AGG + chr5_1:22601773-22601792 Msa0724300:intron 20.0%
!! GTACCTTCTAATATAATTAA+AGG - chr5_1:22601779-22601798 Msa0724290:intron 20.0%
!! TTGAATATATTGATGAAGTT+TGG - chr5_1:22602169-22602188 Msa0724290:CDS 20.0%
!!! ATCAGAAATATTTTACTAGA+CGG + chr5_1:22602411-22602430 Msa0724300:five_prime_UTR 20.0%
!!! TTTTTTTTTCTTCTTCTTGA+AGG + chr5_1:22602444-22602463 Msa0724300:five_prime_UTR 20.0%
!!! ATATAAAGAAGTTTTCAAGT+AGG - chr5_1:22602980-22602999 None:intergenic 20.0%
!! GAAAACTTCTTTATATATGT+TGG + chr5_1:22602984-22603003 Msa0724300:five_prime_UTR 20.0%
!! TTAAGTGGTTATTTGAATAT+AGG + chr5_1:22603520-22603539 Msa0724300:intron 20.0%
!!! TCCTAAATTTTTCATAAAGA+GGG - chr5_1:22604040-22604059 None:intergenic 20.0%
!!! TTCCTAAATTTTTCATAAAG+AGG - chr5_1:22604041-22604060 None:intergenic 20.0%
!! TTATGAAAAATTTAGGAACA+AGG + chr5_1:22604043-22604062 Msa0724300:CDS 20.0%
!! TATGAAAAATTTAGGAACAA+GGG + chr5_1:22604044-22604063 Msa0724300:CDS 20.0%
!! AGTGATGTTAATTCTGTTTT+TGG - chr5_1:22601222-22601241 Msa0724290:intron 25.0%
! TTTGTATCTTGTAAGAGTAA+AGG - chr5_1:22601386-22601405 Msa0724290:intron 25.0%
! AAGACCAGAATACAAATATT+TGG + chr5_1:22601614-22601633 Msa0724300:intron 25.0%
! TTGGTTTAAATGTGTGTATT+TGG + chr5_1:22601633-22601652 Msa0724300:intron 25.0%
! TAATCCTAAAAATCTCACTA+AGG + chr5_1:22602023-22602042 Msa0724300:intron 25.0%
! TAAGGTTAGTAAAATGAATG+AGG + chr5_1:22602041-22602060 Msa0724300:intron 25.0%
! TATTATTGCAGATTCACAAA+TGG + chr5_1:22602190-22602209 Msa0724300:five_prime_UTR 25.0%
!! ACAAATGACTTAAAGCTTTT+GGG - chr5_1:22602377-22602396 Msa0724290:CDS 25.0%
!! TACAAATGACTTAAAGCTTT+TGG - chr5_1:22602378-22602397 Msa0724290:CDS 25.0%
!! TCAGAAATATTTTACTAGAC+GGG + chr5_1:22602412-22602431 Msa0724300:five_prime_UTR 25.0%
! AAAAGATTTGCAAATCAACA+TGG - chr5_1:22602795-22602814 None:intergenic 25.0%
! ATAAGCATGAGTTATTATAC+AGG - chr5_1:22602847-22602866 None:intergenic 25.0%
! TGTGTTCATAACTGAATTAA+TGG - chr5_1:22603125-22603144 None:intergenic 25.0%
!!! TTTTGTTTCAAATGAACAAG+TGG - chr5_1:22603410-22603429 None:intergenic 25.0%
!! GTTAAGTTTTGCTAGTATTT+TGG + chr5_1:22603497-22603516 Msa0724300:intron 25.0%
!! TTAACCTTGTTTACATAGAA+TGG + chr5_1:22603565-22603584 Msa0724300:intron 25.0%
! AATACCAAGAAAAATGTTGT+GGG + chr5_1:22603590-22603609 Msa0724300:CDS 25.0%
! ACCCTCTTTATGAAAAATTT+AGG + chr5_1:22604036-22604055 Msa0724300:CDS 25.0%
! ATGAAAAATTTAGGAACAAG+GGG + chr5_1:22604045-22604064 Msa0724300:CDS 25.0%
! ACAACTGAATTTGGAAATAT+TGG + chr5_1:22604248-22604267 Msa0724300:CDS 25.0%
! CAACTGAATTTGGAAATATT+GGG + chr5_1:22604249-22604268 Msa0724300:CDS 25.0%
! AATTCTTCACAAAAAACTGA+TGG + chr5_1:22604275-22604294 Msa0724300:CDS 25.0%
AGGGTTAAAGAGAAATTTAC+TGG - chr5_1:22600980-22600999 Msa0724290:CDS 30.0%
!!! GGATTTGTTGATATTGCTTT+TGG - chr5_1:22601022-22601041 Msa0724290:CDS 30.0%
!!! TTTTTTGGAGGAGAGAAAAT+TGG - chr5_1:22601043-22601062 Msa0724290:CDS 30.0%
AGCAAATAAACCATTTCGTA+GGG + chr5_1:22601159-22601178 Msa0724300:five_prime_UTR 30.0%
!!! TGGTGCAATTTTTTGCAATT+GGG - chr5_1:22601202-22601221 Msa0724290:intron 30.0%
!!! TTGGTGCAATTTTTTGCAAT+TGG - chr5_1:22601203-22601222 Msa0724290:intron 30.0%
CATCACTCAATATGATATAG+TGG + chr5_1:22601235-22601254 Msa0724300:intron 30.0%
! CTTTACAAGTCAATTTTGTG+CGG - chr5_1:22601318-22601337 Msa0724290:intron 30.0%
! AAAGTGTTTCAGATCTTCTT+AGG + chr5_1:22601418-22601437 Msa0724300:intron 30.0%
ACTTTGACATTAGCCAATTT+AGG + chr5_1:22601561-22601580 Msa0724300:intron 30.0%
ATTCCTTTCAATATGAGTGA+AGG + chr5_1:22601819-22601838 Msa0724300:intron 30.0%
TTGTGTCTCTCCAAATATAT+TGG - chr5_1:22601996-22602015 Msa0724290:intron 30.0%
! CTAACCTTAGTGAGATTTTT+AGG - chr5_1:22602030-22602049 Msa0724290:intron 30.0%
!!! ACTGGGATTTTTTTGTAAAC+AGG + chr5_1:22602233-22602252 Msa0724300:five_prime_UTR 30.0%
!!! CTGGGATTTTTTTGTAAACA+GGG + chr5_1:22602234-22602253 Msa0724300:five_prime_UTR 30.0%
!!! GATTTTTTTGTAAACAGGGT+TGG + chr5_1:22602238-22602257 Msa0724300:five_prime_UTR 30.0%
! CTGAAGAAACAAATCACTTT+TGG + chr5_1:22602262-22602281 Msa0724300:five_prime_UTR 30.0%
AATCCAAACCTTTGATTGAA+AGG + chr5_1:22602312-22602331 Msa0724300:five_prime_UTR 30.0%
ATCCAAACCTTTGATTGAAA+GGG + chr5_1:22602313-22602332 Msa0724300:five_prime_UTR 30.0%
GTTGAGAGATAATAGATTTG+CGG + chr5_1:22602518-22602537 Msa0724300:five_prime_UTR 30.0%
TAAAGTATATAGTGCGTGTT+TGG + chr5_1:22602552-22602571 Msa0724300:five_prime_UTR 30.0%
!!! TGAAAGTGCTTTTGAACATA+TGG - chr5_1:22602607-22602626 None:intergenic 30.0%
!! ATATGTTCAAAAGCACTTTC+AGG + chr5_1:22602606-22602625 Msa0724300:five_prime_UTR 30.0%
AAGGGCAAAAAAGAGAAATT+AGG - chr5_1:22602753-22602772 None:intergenic 30.0%
TGCAAATCAACATGGATTTA+TGG - chr5_1:22602787-22602806 None:intergenic 30.0%
AAACAAAGCAATCACAACTA+AGG - chr5_1:22603213-22603232 None:intergenic 30.0%
!!! TCTTTGTTTTGCTAGTTACT+TGG + chr5_1:22603463-22603482 Msa0724300:intron 30.0%
! TAGTTACTTGGATCAGTTTT+TGG + chr5_1:22603475-22603494 Msa0724300:intron 30.0%
!!! TTGCTAGTATTTTGGTTAAG+TGG + chr5_1:22603505-22603524 Msa0724300:intron 30.0%
TTCACCATTCTATGTAAACA+AGG - chr5_1:22603572-22603591 None:intergenic 30.0%
GAATACCAAGAAAAATGTTG+TGG + chr5_1:22603589-22603608 Msa0724300:CDS 30.0%
GCAGAAAACAAAAGCTAATT+GGG + chr5_1:22603637-22603656 Msa0724300:CDS 30.0%
! AAACTTTGTGAAAGCATGTT+TGG + chr5_1:22603676-22603695 Msa0724300:CDS 30.0%
! AGTACGAGCTTTTCAAAAAA+AGG + chr5_1:22603725-22603744 Msa0724300:CDS 30.0%
! GTACGAGCTTTTCAAAAAAA+GGG + chr5_1:22603726-22603745 Msa0724300:CDS 30.0%
AAAAAGGGTGGACAAATATT+AGG + chr5_1:22603741-22603760 Msa0724300:CDS 30.0%
AAAAGGGTGGACAAATATTA+GGG + chr5_1:22603742-22603761 Msa0724300:CDS 30.0%
GTCCGATTTCATAATTTAAC+CGG + chr5_1:22603764-22603783 Msa0724300:CDS 30.0%
GTCCGGTTAAATTATGAAAT+CGG - chr5_1:22603769-22603788 None:intergenic 30.0%
AGAGCATGGTATAACTTATT+TGG + chr5_1:22603845-22603864 Msa0724300:CDS 30.0%
GAGCATGGTATAACTTATTT+GGG + chr5_1:22603846-22603865 Msa0724300:CDS 30.0%
TGTATTACATACCAGTTGTT+TGG - chr5_1:22603939-22603958 None:intergenic 30.0%
AACACGAGTATACATATCTA+AGG - chr5_1:22603982-22604001 None:intergenic 30.0%
! TCATCATTTTCAAACACAGA+TGG - chr5_1:22604158-22604177 None:intergenic 30.0%
! TGATAATGATGATGATGATG+AGG + chr5_1:22604175-22604194 Msa0724300:CDS 30.0%
AGAGAAATTTACTGGAGAGA+AGG - chr5_1:22600972-22600991 Msa0724290:CDS 35.0%
!! ATGCTATTTGAGTTGGTTGA+GGG - chr5_1:22600999-22601018 Msa0724290:CDS 35.0%
!! CTTTTGGATGCTATTTGAGT+TGG - chr5_1:22601006-22601025 Msa0724290:CDS 35.0%
GAGCAAATAAACCATTTCGT+AGG + chr5_1:22601158-22601177 Msa0724300:five_prime_UTR 35.0%
TTAACCCCTACAGTTACAAT+GGG + chr5_1:22601538-22601557 Msa0724300:intron 35.0%
AAAGTCCCATTGTAACTGTA+GGG - chr5_1:22601546-22601565 Msa0724290:intron 35.0%
AGAGAGACTAAAAGCAGAAA+CGG - chr5_1:22601672-22601691 Msa0724290:intron 35.0%
TAATACCTTGTCATCGATGT+AGG + chr5_1:22602073-22602092 Msa0724300:intron 35.0%
GATCATAAGCATTTGAAGGA+AGG + chr5_1:22602120-22602139 Msa0724300:five_prime_UTR 35.0%
ATAAGCATTTGAAGGAAGGA+AGG + chr5_1:22602124-22602143 Msa0724300:five_prime_UTR 35.0%
TTATCTCCATGAATGAGAAC+TGG + chr5_1:22602215-22602234 Msa0724300:five_prime_UTR 35.0%
TATCTCCATGAATGAGAACT+GGG + chr5_1:22602216-22602235 Msa0724300:five_prime_UTR 35.0%
AAAATCCCAGTTCTCATTCA+TGG - chr5_1:22602224-22602243 Msa0724290:CDS 35.0%
CAAATTGCCCTTTCAATCAA+AGG - chr5_1:22602323-22602342 Msa0724290:CDS 35.0%
! AATGACTTAAAGCTTTTGGG+TGG - chr5_1:22602374-22602393 Msa0724290:CDS 35.0%
! ATATTTCTGATTCCAAGCGA+TGG - chr5_1:22602402-22602421 Msa0724290:exon 35.0%
AGAGATAATAGATTTGCGGT+AGG + chr5_1:22602522-22602541 Msa0724300:five_prime_UTR 35.0%
!! AAAAGCACTTTCAGGATGTT+TGG + chr5_1:22602614-22602633 Msa0724300:five_prime_UTR 35.0%
!! ATTTCAAGTTGTCAAACGCA+AGG - chr5_1:22602664-22602683 None:intergenic 35.0%
!! GAAATCGATTTGTAGAAGCT+AGG - chr5_1:22602710-22602729 None:intergenic 35.0%
AATCAACATGGATTTATGGC+AGG - chr5_1:22602783-22602802 None:intergenic 35.0%
!!! GTTTTCAAGTAGGTGAAAGT+TGG - chr5_1:22602970-22602989 None:intergenic 35.0%
! TAACTGAATTAATGGACACG+AGG - chr5_1:22603117-22603136 None:intergenic 35.0%
GACAGATAGCATTCATCAAT+AGG - chr5_1:22603445-22603464 None:intergenic 35.0%
GGCAGAAAACAAAAGCTAAT+TGG + chr5_1:22603636-22603655 Msa0724300:CDS 35.0%
AGAAGGCTCAACTAAAGAAT+AGG + chr5_1:22603798-22603817 Msa0724300:CDS 35.0%
AACTTATTTGGGAGAGAAAC+TGG + chr5_1:22603857-22603876 Msa0724300:CDS 35.0%
GATGTGAGTTATGAAAATGC+AGG + chr5_1:22604010-22604029 Msa0724300:intron 35.0%
! GAAAAGTGTGGTTAACTCAT+TGG - chr5_1:22604081-22604100 None:intergenic 35.0%
! TGAGTTAACCACACTTTTCA+AGG + chr5_1:22604082-22604101 Msa0724300:CDS 35.0%
AAAACTGATGGTCAAAAGAG+TGG + chr5_1:22604287-22604306 Msa0724300:CDS 35.0%
!!! GCACTTGCTTTTTTCTTACT+TGG - chr5_1:22604347-22604366 None:intergenic 35.0%
! ATCATTTGAGACTTCATCCA+TGG - chr5_1:22604477-22604496 None:intergenic 35.0%
! GATGTAATGGGAATTAAGCT+AGG + chr5_1:22604650-22604669 Msa0724300:three_prime_UTR 35.0%
AACTCCTGCTTTGGTGAAAT+GGG - chr5_1:22600933-22600952 Msa0724290:CDS 40.0%
AAACTCCTGCTTTGGTGAAA+TGG - chr5_1:22600934-22600953 Msa0724290:CDS 40.0%
TGAAGCTAAAACTCCTGCTT+TGG - chr5_1:22600942-22600961 Msa0724290:CDS 40.0%
!! GATGCTATTTGAGTTGGTTG+AGG - chr5_1:22601000-22601019 Msa0724290:CDS 40.0%
!!! AGTGGAGGAAAGGACTTTTT+TGG - chr5_1:22601058-22601077 Msa0724290:CDS 40.0%
GATGTATTGAACAAGAGCAG+TGG - chr5_1:22601076-22601095 Msa0724290:CDS 40.0%
CTGTACAATTCCCTACGAAA+TGG - chr5_1:22601172-22601191 Msa0724290:CDS 40.0%
CTTAACCCCTACAGTTACAA+TGG + chr5_1:22601537-22601556 Msa0724300:intron 40.0%
AAGTCCCATTGTAACTGTAG+GGG - chr5_1:22601545-22601564 Msa0724290:intron 40.0%
CAAAGTCCCATTGTAACTGT+AGG - chr5_1:22601547-22601566 Msa0724290:intron 40.0%
CGAGCTAGAACATAACAACA+TGG - chr5_1:22601751-22601770 Msa0724290:intron 40.0%
GGTCCTTCACTCATATTGAA+AGG - chr5_1:22601825-22601844 Msa0724290:intron 40.0%
! TCGAGCCATTGCTAGATTTT+GGG - chr5_1:22602102-22602121 Msa0724290:CDS 40.0%
! ATCGAGCCATTGCTAGATTT+TGG - chr5_1:22602103-22602122 Msa0724290:CDS 40.0%
GCTCGATCATAAGCATTTGA+AGG + chr5_1:22602116-22602135 Msa0724300:five_prime_UTR 40.0%
TGCCCTTTCAATCAAAGGTT+TGG - chr5_1:22602318-22602337 Msa0724290:CDS 40.0%
!! ACTTAAAGCTTTTGGGTGGT+TGG - chr5_1:22602370-22602389 Msa0724290:CDS 40.0%
TTCTTCTTGAAGGACTAGAC+AGG + chr5_1:22602454-22602473 Msa0724300:five_prime_UTR 40.0%
ATAGTGCGTGTTTGGTTACA+CGG + chr5_1:22602560-22602579 Msa0724300:five_prime_UTR 40.0%
! ACAAATCGATTTCCTACCTC+AGG + chr5_1:22602717-22602736 Msa0724300:five_prime_UTR 40.0%
TTTATGGCAGGTGAAGGAAA+GGG - chr5_1:22602771-22602790 None:intergenic 40.0%
ATTTATGGCAGGTGAAGGAA+AGG - chr5_1:22602772-22602791 None:intergenic 40.0%
TCCATCGCACACTTAAGAAA+AGG + chr5_1:22603027-22603046 Msa0724300:five_prime_UTR 40.0%
! TCCTTTTCTTAAGTGTGCGA+TGG - chr5_1:22603031-22603050 None:intergenic 40.0%
TCGCACACTTAAGAAAAGGA+AGG + chr5_1:22603031-22603050 Msa0724300:five_prime_UTR 40.0%
ACTGCTGCTATATGGAACTT+TGG - chr5_1:22603064-22603083 None:intergenic 40.0%
TATCCTACACTGCTGCTATA+TGG - chr5_1:22603072-22603091 None:intergenic 40.0%
! GGAACCCACAACATTTTTCT+TGG - chr5_1:22603597-22603616 None:intergenic 40.0%
! CGAGCTTTTCAAAAAAAGGG+TGG + chr5_1:22603729-22603748 Msa0724300:CDS 40.0%
TAGGTATGACAGTCTGAGAA+AGG + chr5_1:22603817-22603836 Msa0724300:CDS 40.0%
ATGACAGTCTGAGAAAGGAT+TGG + chr5_1:22603822-22603841 Msa0724300:CDS 40.0%
TTTGGGAGAGAAACTGGATT+AGG + chr5_1:22603863-22603882 Msa0724300:CDS 40.0%
TTGGGAGAGAAACTGGATTA+GGG + chr5_1:22603864-22603883 Msa0724300:CDS 40.0%
CACTACATCCTTGAAAAGTG+TGG - chr5_1:22604093-22604112 None:intergenic 40.0%
!! CACACTTTTCAAGGATGTAG+TGG + chr5_1:22604091-22604110 Msa0724300:CDS 40.0%
TTCAAGGATGTAGTGGCTAA+TGG + chr5_1:22604098-22604117 Msa0724300:CDS 40.0%
GTTGGAGCAACAACTGAATT+TGG + chr5_1:22604239-22604258 Msa0724300:CDS 40.0%
TGCATCTATTGGTGAAGTGA+TGG + chr5_1:22604439-22604458 Msa0724300:CDS 40.0%
GAAATAAACATCTCCCTTGC+AGG - chr5_1:22604542-22604561 None:intergenic 40.0%
GAGATGTTTATTTCCCTACG+AGG + chr5_1:22604548-22604567 Msa0724300:CDS 40.0%
! TCACACAGGTTAGTCATGAA+CGG - chr5_1:22604626-22604645 None:intergenic 40.0%
CTGTGTGACTAGGATGTAAT+GGG + chr5_1:22604638-22604657 Msa0724300:exon 40.0%
!!! GGAGGAAAGGACTTTTTTGG+AGG - chr5_1:22601055-22601074 Msa0724290:CDS 45.0%
GTATTGAACAAGAGCAGTGG+AGG - chr5_1:22601073-22601092 Msa0724290:CDS 45.0%
!! AACTAGCAGAAGTGCTTGTG+AGG - chr5_1:22601105-22601124 Msa0724290:CDS 45.0%
GGTAGCCCAAAATCTAGCAA+TGG + chr5_1:22602094-22602113 Msa0724300:five_prime_UTR 45.0%
AGCATTTGAAGGAAGGAAGG+AGG + chr5_1:22602127-22602146 Msa0724300:five_prime_UTR 45.0%
GCATTTGAAGGAAGGAAGGA+GGG + chr5_1:22602128-22602147 Msa0724300:five_prime_UTR 45.0%
ATTTGTGCCCTCACTGCAAA+TGG + chr5_1:22602338-22602357 Msa0724300:five_prime_UTR 45.0%
GTTCAGTCCATTTGCAGTGA+GGG - chr5_1:22602348-22602367 Msa0724290:CDS 45.0%
AGTCATTTGTAGCCATCGCT+TGG + chr5_1:22602387-22602406 Msa0724300:five_prime_UTR 45.0%
! TCAAGTTGTCAAACGCAAGG+CGG - chr5_1:22602661-22602680 None:intergenic 45.0%
TCGATTTCCTACCTCAGGTT+TGG + chr5_1:22602722-22602741 Msa0724300:intron 45.0%
CGATTTCCTACCTCAGGTTT+GGG + chr5_1:22602723-22602742 Msa0724300:intron 45.0%
ATTAGGAGAACCCAAACCTG+AGG - chr5_1:22602736-22602755 None:intergenic 45.0%
CATGGATTTATGGCAGGTGA+AGG - chr5_1:22602777-22602796 None:intergenic 45.0%
GTGCGATGGAATAACAGAGT+GGG - chr5_1:22603017-22603036 None:intergenic 45.0%
TGTGCGATGGAATAACAGAG+TGG - chr5_1:22603018-22603037 None:intergenic 45.0%
GTTCCATATAGCAGCAGTGT+AGG + chr5_1:22603066-22603085 Msa0724300:five_prime_UTR 45.0%
CAGCAGTGTAGGATACTTCA+AGG + chr5_1:22603077-22603096 Msa0724300:five_prime_UTR 45.0%
! ATGTTTGGAGCAAGTCTCCA+AGG + chr5_1:22603691-22603710 Msa0724300:CDS 45.0%
! TGTTTGGAGCAAGTCTCCAA+GGG + chr5_1:22603692-22603711 Msa0724300:CDS 45.0%
AACCGGACTGAAGTATGAGA+AGG + chr5_1:22603781-22603800 Msa0724300:CDS 45.0%
AGCCTTCTCATACTTCAGTC+CGG - chr5_1:22603786-22603805 None:intergenic 45.0%
TGAGAAAGGATTGGAGAGCA+TGG + chr5_1:22603831-22603850 Msa0724300:CDS 45.0%
! GAGAGAAACTGGATTAGGGT+GGG + chr5_1:22603868-22603887 Msa0724300:CDS 45.0%
! GCTACAACAGTGTTGTTCAC+AGG - chr5_1:22603896-22603915 None:intergenic 45.0%
GTGGTTAACTCATTGGCGAA+TGG - chr5_1:22604074-22604093 None:intergenic 45.0%
! TGGCTAATGGAGAGTACACT+TGG + chr5_1:22604111-22604130 Msa0724300:CDS 45.0%
! GGCTAATGGAGAGTACACTT+GGG + chr5_1:22604112-22604131 Msa0724300:CDS 45.0%
! TGATGATGATGATGAGGCAG+TGG + chr5_1:22604181-22604200 Msa0724300:CDS 45.0%
GTCAAAAGAGTGGTGAGAAG+AGG + chr5_1:22604297-22604316 Msa0724300:CDS 45.0%
TGCTGATGTTTAAGCCTGCA+AGG + chr5_1:22604525-22604544 Msa0724300:CDS 45.0%
GCTGATGTTTAAGCCTGCAA+GGG + chr5_1:22604526-22604545 Msa0724300:CDS 45.0%
TATTTCCCTACGAGGTTCAG+AGG + chr5_1:22604556-22604575 Msa0724300:CDS 45.0%
CAGAGGAGAAGAGGTTGAAT+TGG + chr5_1:22604573-22604592 Msa0724300:CDS 45.0%
CATGACTAACCTGTGTGACT+AGG + chr5_1:22604628-22604647 Msa0724300:CDS 45.0%
CCATTACATCCTAGTCACAC+AGG - chr5_1:22604640-22604659 None:intergenic 45.0%
CCTGTGTGACTAGGATGTAA+TGG + chr5_1:22604637-22604656 Msa0724300:exon 45.0%
!!! TAAAAATAAATAAATTTTTG+TGG + chr5_1:22601478-22601497 Msa0724300:intron 5.0%
!! AAATTTATTTATATAGAAAT+TGG - chr5_1:22601846-22601865 Msa0724290:intron 5.0%
!!! TCTATATAAATAAATTTTAA+AGG + chr5_1:22601849-22601868 Msa0724300:intron 5.0%
TCAGCCCATTTCACCAAAGC+AGG + chr5_1:22600926-22600945 Msa0724300:five_prime_UTR 50.0%
GAACAAGAGCAGTGGAGGAA+AGG - chr5_1:22601068-22601087 Msa0724290:CDS 50.0%
!! AGCAGAAGTGCTTGTGAGGT+TGG - chr5_1:22601101-22601120 Msa0724290:CDS 50.0%
GGCTACCTACATCGATGACA+AGG - chr5_1:22602081-22602100 Msa0724290:CDS 50.0%
GGTTCAGTCCATTTGCAGTG+AGG - chr5_1:22602349-22602368 Msa0724290:CDS 50.0%
GTTCCTCCTCACCTAGTGAT+GGG + chr5_1:22603612-22603631 Msa0724300:CDS 50.0%
TTCCTCCTCACCTAGTGATG+GGG + chr5_1:22603613-22603632 Msa0724300:CDS 50.0%
CGTACTAACACGTTCTCCCT+TGG - chr5_1:22603711-22603730 None:intergenic 50.0%
! GGAGAGAAACTGGATTAGGG+TGG + chr5_1:22603867-22603886 Msa0724300:CDS 50.0%
CTGTTGTAGCACCTGATGAG+TGG + chr5_1:22603906-22603925 Msa0724300:CDS 50.0%
TTGTAGCACCTGATGAGTGG+TGG + chr5_1:22603909-22603928 Msa0724300:CDS 50.0%
TGTAGCACCTGATGAGTGGT+GGG + chr5_1:22603910-22603929 Msa0724300:CDS 50.0%
TACACTTGGGCACCATCATG+TGG + chr5_1:22604125-22604144 Msa0724300:CDS 50.0%
ACACTTGGGCACCATCATGT+GGG + chr5_1:22604126-22604145 Msa0724300:CDS 50.0%
GATGGCAATACCCCACATGA+TGG - chr5_1:22604140-22604159 None:intergenic 50.0%
GATAGCGAGGATGCAAGTGT+TGG + chr5_1:22604221-22604240 Msa0724300:CDS 50.0%
TCGTTCTCGCAATGATGCTG+CGG + chr5_1:22604412-22604431 Msa0724300:CDS 50.0%
GCTGCGGGTAATGCATCTAT+TGG + chr5_1:22604428-22604447 Msa0724300:CDS 50.0%
CTTCTCCTCTGAACCTCGTA+GGG - chr5_1:22604564-22604583 None:intergenic 50.0%
TCTTCTCCTCTGAACCTCGT+AGG - chr5_1:22604565-22604584 None:intergenic 50.0%
TACGAGGTTCAGAGGAGAAG+AGG + chr5_1:22604564-22604583 Msa0724300:CDS 50.0%
! GGTTAGTCATGAACGGCAGT+GGG - chr5_1:22604619-22604638 None:intergenic 50.0%
! AGGTTAGTCATGAACGGCAG+TGG - chr5_1:22604620-22604639 None:intergenic 50.0%
GTGCGTGTTTGGTTACACGG+TGG + chr5_1:22602563-22602582 Msa0724300:five_prime_UTR 55.0%
AGTTGTCAAACGCAAGGCGG+CGG - chr5_1:22602658-22602677 None:intergenic 55.0%
GGAGAACCCAAACCTGAGGT+AGG - chr5_1:22602732-22602751 None:intergenic 55.0%
GGTTCCTCCTCACCTAGTGA+TGG + chr5_1:22603611-22603630 Msa0724300:CDS 55.0%
TCCTCCTCACCTAGTGATGG+GGG + chr5_1:22603614-22603633 Msa0724300:CDS 55.0%
! GTTTTCTGCCCCCCATCACT+AGG - chr5_1:22603626-22603645 None:intergenic 55.0%
TTGGTCTCCCACCACTCATC+AGG - chr5_1:22603920-22603939 None:intergenic 55.0%
! GTGGTGGGAGACCAAACAAC+TGG + chr5_1:22603925-22603944 Msa0724300:CDS 55.0%
CACTTGGGCACCATCATGTG+GGG + chr5_1:22604127-22604146 Msa0724300:CDS 55.0%
GATGAGGCAGTGGCTGTAGA+AGG + chr5_1:22604191-22604210 Msa0724300:CDS 55.0%
GCAGTGGCTGTAGAAGGATC+TGG + chr5_1:22604197-22604216 Msa0724300:CDS 55.0%
AGAAGGATCTGGCGATAGCG+AGG + chr5_1:22604208-22604227 Msa0724300:CDS 55.0%
CGTTCTCGCAATGATGCTGC+GGG + chr5_1:22604413-22604432 Msa0724300:CDS 55.0%
GATGGCTGAGCTTCACACCA+TGG + chr5_1:22604457-22604476 Msa0724300:CDS 55.0%
! CCTCCTCACCTAGTGATGGG+GGG + chr5_1:22603615-22603634 Msa0724300:CDS 60.0%
AACGCAAGGCGGCGGCAGAA+GGG - chr5_1:22602650-22602669 None:intergenic 65.0%
AAACGCAAGGCGGCGGCAGA+AGG - chr5_1:22602651-22602670 None:intergenic 65.0%
CCCCCCATCACTAGGTGAGG+AGG - chr5_1:22603618-22603637 None:intergenic 65.0%
CTGCCCCCCATCACTAGGTG+AGG - chr5_1:22603621-22603640 None:intergenic 65.0%
AGGCGGCGGCAGAAGGGTGA+TGG - chr5_1:22602644-22602663 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 22600905 22604678 22600905 ID=Msa0724300;Name=Msa0724300
chr5_1 mRNA 22600905 22604678 22600905 ID=Msa0724300-mRNA-1;Parent=Msa0724300;Name=Msa0724300-mRNA-1;_AED=0.00;_eAED=0.00;_QI=1086|1|1|1|0.25|0.2|5|29|326
chr5_1 exon 22600905 22601191 22600905 ID=Msa0724300-mRNA-1:exon:8551;Parent=Msa0724300-mRNA-1
chr5_1 exon 22602079 22602738 22602079 ID=Msa0724300-mRNA-1:exon:8552;Parent=Msa0724300-mRNA-1
chr5_1 exon 22602961 22603098 22602961 ID=Msa0724300-mRNA-1:exon:8553;Parent=Msa0724300-mRNA-1
chr5_1 exon 22603583 22603946 22603583 ID=Msa0724300-mRNA-1:exon:8554;Parent=Msa0724300-mRNA-1
chr5_1 exon 22604032 22604678 22604032 ID=Msa0724300-mRNA-1:exon:8555;Parent=Msa0724300-mRNA-1
chr5_1 five_prime_UTR 22600905 22601191 22600905 ID=Msa0724300-mRNA-1:five_prime_utr;Parent=Msa0724300-mRNA-1
chr5_1 five_prime_UTR 22602079 22602738 22602079 ID=Msa0724300-mRNA-1:five_prime_utr;Parent=Msa0724300-mRNA-1
chr5_1 five_prime_UTR 22602961 22603098 22602961 ID=Msa0724300-mRNA-1:five_prime_utr;Parent=Msa0724300-mRNA-1
chr5_1 five_prime_UTR 22603583 22603583 22603583 ID=Msa0724300-mRNA-1:five_prime_utr;Parent=Msa0724300-mRNA-1
chr5_1 CDS 22603584 22603946 22603584 ID=Msa0724300-mRNA-1:cds;Parent=Msa0724300-mRNA-1
chr5_1 CDS 22604032 22604649 22604032 ID=Msa0724300-mRNA-1:cds;Parent=Msa0724300-mRNA-1
chr5_1 three_prime_UTR 22604650 22604678 22604650 ID=Msa0724300-mRNA-1:three_prime_utr;Parent=Msa0724300-mRNA-1
Gene Sequence

>Msa0724300

ATGGTGAATACCAAGAAAAATGTTGTGGGTTCCTCCTCACCTAGTGATGGGGGGCAGAAAACAAAAGCTAATTGGGATTATAAGTCAACTGAAAACTTTGTGAAAGCATGTTTGGAGCAAGTCTCCAAGGGAGAACGTGTTAGTACGAGCTTTTCAAAAAAAGGGTGGACAAATATTAGGGTCCGATTTCATAATTTAACCGGACTGAAGTATGAGAAGGCTCAACTAAAGAATAGGTATGACAGTCTGAGAAAGGATTGGAGAGCATGGTATAACTTATTTGGGAGAGAAACTGGATTAGGGTGGGATCCTGTGAACAACACTGTTGTAGCACCTGATGAGTGGTGGGAGACCAAACAACTGGAAAACCCTCTTTATGAAAAATTTAGGAACAAGGGGCTTCCATTCGCCAATGAGTTAACCACACTTTTCAAGGATGTAGTGGCTAATGGAGAGTACACTTGGGCACCATCATGTGGGGTATTGCCATCTGTGTTTGAAAATGATGATAATGATGATGATGATGAGGCAGTGGCTGTAGAAGGATCTGGCGATAGCGAGGATGCAAGTGTTGGAGCAACAACTGAATTTGGAAATATTGGGTTGAATTCTTCACAAAAAACTGATGGTCAAAAGAGTGGTGAGAAGAGGAAAAGAGCTGTTAGAGCAGACAAGCCAAGTAAGAAAAAAGCAAGTGCATCATCAAAGATAGCTGAAGCTGTTAGTTTAATTGCAGAGACATGTCGTTCTCGCAATGATGCTGCGGGTAATGCATCTATTGGTGAAGTGATGGCTGAGCTTCACACCATGGATGAAGTCTCAAATGATCTTTATTTGCATGCTCAGTGTTGCAACTTGCTGATGTTTAAGCCTGCAAGGGAGATGTTTATTTCCCTACGAGGTTCAGAGGAGAAGAGGTTGAATTGGCTTAAGCATACAATTGATAACCCACTGCCGTTCATGACTAACCTGTGTGACTAG
Protein sequence

>Msa0724300

MVNTKKNVVGSSSPSDGGQKTKANWDYKSTENFVKACLEQVSKGERVSTSFSKKGWTNIRVRFHNLTGLKYEKAQLKNRYDSLRKDWRAWYNLFGRETGLGWDPVNNTVVAPDEWWETKQLENPLYEKFRNKGLPFANELTTLFKDVVANGEYTWAPSCGVLPSVFENDDNDDDDEAVAVEGSGDSEDASVGATTEFGNIGLNSSQKTDGQKSGEKRKRAVRADKPSKKKASASSKIAEAVSLIAETCRSRNDAAGNASIGEVMAELHTMDEVSNDLYLHAQCCNLLMFKPAREMFISLRGSEEKRLNWLKHTIDNPLPFMTNLCD*