AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1439800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1439800 MtrunA17_Chr8g0382711 98.592 213 3 0 1 213 1 213 1.62e-155 429
Msa1439800 MtrunA17_Chr4g0052911 53.846 130 59 1 76 204 108 237 1.10e-42 144
Msa1439800 MtrunA17_Chr8g0339171 40.000 110 55 2 104 213 46 144 1.09e-19 82.0
Msa1439800 MtrunA17_Chr4g0033841 28.090 178 111 4 36 203 48 218 5.01e-17 76.6
Msa1439800 MtrunA17_Chr5g0396231 39.623 106 50 4 102 206 407 499 1.61e-15 74.7
Msa1439800 MtrunA17_Chr7g0234801 38.235 102 50 3 108 208 52 141 8.71e-13 66.6
Msa1439800 MtrunA17_Chr8g0377771 36.885 122 63 4 89 208 36 145 1.47e-12 65.9
Msa1439800 MtrunA17_Chr8g0339141 36.449 107 55 3 103 208 53 147 8.32e-12 63.9
Msa1439800 MtrunA17_Chr1g0179681 35.075 134 66 5 81 206 123 243 1.34e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1439800 AT4G39710.1 76.471 170 40 0 44 213 48 217 1.11e-94 275
Msa1439800 AT4G39710.3 76.471 170 40 0 44 213 48 217 1.11e-94 275
Msa1439800 AT4G39710.2 75.630 119 29 0 44 162 48 166 2.27e-62 192
Msa1439800 AT5G45680.1 56.911 123 53 0 83 205 84 206 6.53e-44 146
Msa1439800 AT5G48580.1 39.806 103 51 2 104 206 48 139 1.65e-18 79.3
Msa1439800 AT3G25220.1 40.777 103 50 2 104 206 48 139 1.04e-17 77.0
Msa1439800 AT2G43560.1 32.317 164 85 5 49 203 66 212 1.15e-15 73.2
Msa1439800 AT2G43560.2 32.317 164 85 5 49 203 10 156 1.34e-15 72.0
Msa1439800 AT5G05420.1 37.736 106 52 4 102 206 50 142 1.21e-14 68.6
Msa1439800 AT3G25230.1 37.008 127 66 4 84 208 32 146 3.18e-13 68.2
Msa1439800 AT3G25230.2 37.008 127 66 4 84 208 32 146 3.32e-13 68.2
Msa1439800 AT5G48570.1 36.634 101 53 2 108 208 65 154 1.26e-11 63.5
Msa1439800 AT3G10060.1 30.000 160 91 5 55 206 70 216 2.55e-11 61.2

Find 98 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATTGGATCAGGGAATTT+TGG 0.124572 tig0028866:+23226 Msa1439800:CDS
GGATCCTCTTTACTCTTAAA+AGG 0.137016 tig0028866:-24847 None:intergenic
CCAAAGATGAATCATGATTT+TGG 0.177029 tig0028866:+25080 Msa1439800:three_prime_UTR
AGTTAAAATGTACAATTTCT+TGG 0.227295 tig0028866:+25121 Msa1439800:three_prime_UTR
AATGTGAATTTCAGGTAATT+AGG 0.235234 tig0028866:+23204 Msa1439800:intron
TAAATTTGTTGGTCTTTATT+CGG 0.242676 tig0028866:+23922 Msa1439800:CDS
TTAAAAGGGGTATTCTATTC+AGG 0.254794 tig0028866:-24832 None:intergenic
GGATTAAAGATACAAGTAAT+AGG 0.266749 tig0028866:-25017 None:intergenic
TGCTGAGCATAACACCTTAT+TGG 0.271308 tig0028866:-22703 None:intergenic
TGCGATTATGTTGAGGGTTT+TGG 0.282156 tig0028866:+22894 Msa1439800:CDS
GGTAATTAGGGGATTGGATC+AGG 0.291509 tig0028866:+23217 Msa1439800:intron
GAGCTTAATTATGTTAAATC+TGG 0.297049 tig0028866:+22861 Msa1439800:CDS
GTTAGGCAGATTCTCCTTCC+TGG 0.307741 tig0028866:+24757 Msa1439800:three_prime_UTR
AAATTTGTTGGTCTTTATTC+GGG 0.311128 tig0028866:+23923 Msa1439800:CDS
CCAAAATCATGATTCATCTT+TGG 0.311610 tig0028866:-25080 None:intergenic
CTGTATGATATTAAATTTGT+TGG 0.318710 tig0028866:+23911 Msa1439800:CDS
CGTTAGTTGGAATTGGTATT+GGG 0.335154 tig0028866:+22748 Msa1439800:CDS
ATGTGAATTTCAGGTAATTA+GGG 0.335286 tig0028866:+23205 Msa1439800:intron
GAACCTGCAGGCTGCTTCTC+AGG 0.336346 tig0028866:+23403 Msa1439800:CDS
TTTGGTGATGAAGCTCCTTT+AGG 0.338411 tig0028866:+22912 Msa1439800:CDS
GAGAAGCAGCCTGCAGGTTC+AGG 0.345343 tig0028866:-23400 None:intergenic
ACACACCCTAAGATAGAAAA+TGG 0.350166 tig0028866:+22593 Msa1439800:exon
CTCTCATTCTCACTCTGTTC+AGG 0.375218 tig0028866:+22618 Msa1439800:CDS
AAGAAGCCGTTAGTTGGAAT+TGG 0.375819 tig0028866:+22741 Msa1439800:CDS
CCGTTAGTTGGAATTGGTAT+TGG 0.376392 tig0028866:+22747 Msa1439800:CDS
CATATGAACCGCACATGGAT+TGG 0.400176 tig0028866:+23989 Msa1439800:three_prime_UTR
CCTTCTTGTATGAAATTGAA+TGG 0.401384 tig0028866:+22663 Msa1439800:CDS
GATCCTCTTTACTCTTAAAA+GGG 0.410956 tig0028866:-24846 None:intergenic
AAGCTATAAAGTATCCAATA+AGG 0.422362 tig0028866:+22689 Msa1439800:CDS
AATTATGTTAAATCTGGGCT+TGG 0.422396 tig0028866:+22867 Msa1439800:CDS
TATGTCCGACTGCACTAAAC+AGG 0.422517 tig0028866:-24804 None:intergenic
ATTGTAGCAGCATGGGTAAT+GGG 0.427828 tig0028866:+22771 Msa1439800:CDS
AATTGTTTAGAGTAATGAAA+TGG 0.430565 tig0028866:+24703 Msa1439800:intron
ATTTCAGGTAATTAGGGGAT+TGG 0.431931 tig0028866:+23211 Msa1439800:intron
AACGAAAAGAAGCCGTTAGT+TGG 0.432641 tig0028866:+22735 Msa1439800:CDS
GGTTATTGCGATTATGTTGA+GGG 0.433499 tig0028866:+22888 Msa1439800:CDS
ATGATATGAGTAACTCCATT+TGG 0.450015 tig0028866:-22532 None:intergenic
GATTAAAGATACAAGTAATA+GGG 0.452910 tig0028866:-25016 None:intergenic
GGGATTAACGGCGTTGGATG+CGG 0.454068 tig0028866:+22791 Msa1439800:CDS
ATATGAACCGCACATGGATT+GGG 0.455362 tig0028866:+23990 Msa1439800:three_prime_UTR
AGCTTAATTATGTTAAATCT+GGG 0.462974 tig0028866:+22862 Msa1439800:CDS
GTGTGTATATAGTTCTCTTA+AGG 0.477568 tig0028866:-22570 None:intergenic
AGCATGGGTAATGGGATTAA+CGG 0.477643 tig0028866:+22779 Msa1439800:CDS
AATAGGTGACTGCAATATAC+CGG 0.483379 tig0028866:+23874 Msa1439800:intron
ATTTCATACAAGAAGGAAAA+CGG 0.483988 tig0028866:-22656 None:intergenic
CCATTCAATTTCATACAAGA+AGG 0.487470 tig0028866:-22663 None:intergenic
CACAGAGGAAGAAGATCAAA+AGG 0.492107 tig0028866:-25038 None:intergenic
CTAATATATATCACTGCACC+AGG 0.496741 tig0028866:-24873 None:intergenic
GATTGTAGCAGCATGGGTAA+TGG 0.497305 tig0028866:+22770 Msa1439800:CDS
AGAAAGGATGGTATGCCAAA+TGG 0.512086 tig0028866:+22517 None:intergenic
TGGTTATTGCGATTATGTTG+AGG 0.512709 tig0028866:+22887 Msa1439800:CDS
AATTTAATACCTATCCGCAT+TGG 0.515893 tig0028866:-23266 None:intergenic
ATTCCTCCATTGTTAGCGTA+TGG 0.515896 tig0028866:+23376 Msa1439800:CDS
CTATTCCTGTTTAGTGCAGT+CGG 0.517728 tig0028866:+24799 Msa1439800:three_prime_UTR
AATTTGAGAGAGCTGGAACC+AGG 0.519696 tig0028866:-24775 None:intergenic
CTTTGGCATTTCATTGCAGA+CGG 0.521690 tig0028866:-25063 None:intergenic
AAACCTGAGAAGCAGCCTGC+AGG 0.532161 tig0028866:-23406 None:intergenic
ATAGTAGTTATAAACGTGCT+AGG 0.536904 tig0028866:+23078 Msa1439800:CDS
TTAATACCTATCCGCATTGG+AGG 0.539094 tig0028866:-23263 None:intergenic
TACAGAAGAGTTGCATTGCC+CGG 0.539306 tig0028866:-23893 None:intergenic
GAATAGTAATTTGAGAGAGC+TGG 0.541808 tig0028866:-24782 None:intergenic
ATATATCACTGCACCAGGGT+TGG 0.542561 tig0028866:-24868 None:intergenic
GGTAATGGGATTAACGGCGT+TGG 0.544791 tig0028866:+22785 Msa1439800:CDS
AGGCCACTCACTATGCGTAT+TGG 0.545910 tig0028866:+23098 Msa1439800:CDS
ACATCAATAAGCTCTCCTAA+AGG 0.553954 tig0028866:-22927 None:intergenic
GCGTATGGTCCTGAACCTGC+AGG 0.559980 tig0028866:+23391 Msa1439800:CDS
CTCACTATGCGTATTGGTGT+TGG 0.565060 tig0028866:+23104 Msa1439800:CDS
TATTGGGATTGTAGCAGCAT+GGG 0.571835 tig0028866:+22764 Msa1439800:CDS
TGAGTGTGGATCGACTTGTT+AGG 0.572466 tig0028866:+24740 Msa1439800:three_prime_UTR
TCAATGAAGTCAAAATTGAT+CGG 0.581630 tig0028866:+23955 Msa1439800:exon
TGATATATATTAGACAAGGC+TGG 0.589136 tig0028866:+24883 Msa1439800:three_prime_UTR
GCCACATGGTGTAGAAAGGA+TGG 0.591372 tig0028866:+22505 None:intergenic
AATTGAATACTATGCTACTG+TGG 0.592481 tig0028866:+22824 Msa1439800:CDS
GTAATTAGGGGATTGGATCA+GGG 0.593610 tig0028866:+23218 Msa1439800:CDS
ACTATCAAATACTATTCCAT+CGG 0.594477 tig0028866:-23060 None:intergenic
ATTGAATACTATGCTACTGT+GGG 0.611936 tig0028866:+22825 Msa1439800:CDS
ATCCTCTTTACTCTTAAAAG+GGG 0.619462 tig0028866:-24845 None:intergenic
CCAATACCAATTCCAACTAA+CGG 0.620051 tig0028866:-22747 None:intergenic
ATACGCATATGAACCGCACA+TGG 0.620763 tig0028866:+23984 Msa1439800:three_prime_UTR
TGAGAGAGCTGGAACCAGGA+AGG 0.621370 tig0028866:-24771 None:intergenic
TATGCGTATTGGTGTTGGCA+AGG 0.622438 tig0028866:+23109 Msa1439800:CDS
GTATTGGGATTGTAGCAGCA+TGG 0.623097 tig0028866:+22763 Msa1439800:CDS
TGTGAATTTCAGGTAATTAG+GGG 0.623369 tig0028866:+23206 Msa1439800:intron
ACATAATTAAGCTCACACAT+TGG 0.625130 tig0028866:-22852 None:intergenic
GGCGTACCTCCAATGCGGAT+AGG 0.639198 tig0028866:+23257 Msa1439800:CDS
AGAAGGAAAACGGTTATGAA+CGG 0.643601 tig0028866:-22646 None:intergenic
GTGTTATGCTCAGCACGTAA+CGG 0.647081 tig0028866:+22711 Msa1439800:CDS
ATAGGTGACTGCAATATACC+GGG 0.650180 tig0028866:+23875 Msa1439800:intron
TCAGGACCATACGCTAACAA+TGG 0.656714 tig0028866:-23382 None:intergenic
GGACCATACGCTAACAATGG+AGG 0.666829 tig0028866:-23379 None:intergenic
GAGTAAAGAGGATCCAACCC+TGG 0.668199 tig0028866:+24855 Msa1439800:three_prime_UTR
ACACCAATACGCATAGTGAG+TGG 0.668322 tig0028866:-23101 None:intergenic
TATACTGCTAGATTCGCCGA+TGG 0.684653 tig0028866:+23044 Msa1439800:CDS
AAACTCACCCAATCCATGTG+CGG 0.699883 tig0028866:-23997 None:intergenic
GTGAAGGCGTACCTCCAATG+CGG 0.724987 tig0028866:+23252 Msa1439800:CDS
GCAGTGATATATATTAGACA+AGG 0.729639 tig0028866:+24879 Msa1439800:three_prime_UTR
TAATATATATCACTGCACCA+GGG 0.746565 tig0028866:-24872 None:intergenic
TCATTGCAGACGGCACACAG+AGG 0.766659 tig0028866:-25053 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTACTATTTTTACTT+AGG + tig0028866:23334-23353 Msa1439800:intron 10.0%
!!! TTATAAACTAATTTTTTCTA+TGG + tig0028866:24561-24580 Msa1439800:intron 10.0%
!!! TTTTTAATAATTTTTTTGAC+TGG + tig0028866:24672-24691 Msa1439800:intron 10.0%
!! AGCTTAATTATGTTAAATCT+GGG + tig0028866:22862-22881 Msa1439800:CDS 20.0%
!!! ATTTACTATTTTTACTTAGG+TGG + tig0028866:23337-23356 Msa1439800:intron 20.0%
!!! TTTACTATTTTTACTTAGGT+GGG + tig0028866:23338-23357 Msa1439800:intron 20.0%
!! TGAAACATTAATCATGTATT+TGG + tig0028866:23537-23556 Msa1439800:intron 20.0%
!! ATTATTATCAGAAGAAGAAA+AGG + tig0028866:23806-23825 Msa1439800:intron 20.0%
!! CTGTATGATATTAAATTTGT+TGG + tig0028866:23911-23930 Msa1439800:CDS 20.0%
!!! TAAATTTGTTGGTCTTTATT+CGG + tig0028866:23922-23941 Msa1439800:CDS 20.0%
!!! AATTGTTTAGAGTAATGAAA+TGG + tig0028866:24703-24722 Msa1439800:intron 20.0%
!! GATTAAAGATACAAGTAATA+GGG - tig0028866:25019-25038 None:intergenic 20.0%
!! AGTTAAAATGTACAATTTCT+TGG + tig0028866:25121-25140 Msa1439800:three_prime_UTR 20.0%
! ATTTCATACAAGAAGGAAAA+CGG - tig0028866:22659-22678 None:intergenic 25.0%
!! AAGCTATAAAGTATCCAATA+AGG + tig0028866:22689-22708 Msa1439800:CDS 25.0%
! GAGCTTAATTATGTTAAATC+TGG + tig0028866:22861-22880 Msa1439800:CDS 25.0%
! ACTATCAAATACTATTCCAT+CGG - tig0028866:23063-23082 None:intergenic 25.0%
!!! TTTCTTGTTTTTGTTGAGTT+TGG + tig0028866:23168-23187 Msa1439800:intron 25.0%
!! AATGTGAATTTCAGGTAATT+AGG + tig0028866:23204-23223 Msa1439800:intron 25.0%
!! ATGTGAATTTCAGGTAATTA+GGG + tig0028866:23205-23224 Msa1439800:intron 25.0%
! TACATTGGTAGAAAATATAC+CGG - tig0028866:23588-23607 None:intergenic 25.0%
!! AAAAGACCATGGATTTTATT+AGG + tig0028866:23758-23777 Msa1439800:intron 25.0%
!!! AGTTTTGTCATTGATTCAAT+AGG + tig0028866:23857-23876 Msa1439800:intron 25.0%
!!! AAATTTGTTGGTCTTTATTC+GGG + tig0028866:23923-23942 Msa1439800:CDS 25.0%
! TCAATGAAGTCAAAATTGAT+CGG + tig0028866:23955-23974 Msa1439800:exon 25.0%
! CAAAATATTCTCAAAAGATC+AGG - tig0028866:24023-24042 None:intergenic 25.0%
!!! CTACTTAAAATTTTGACACA+GGG + tig0028866:24298-24317 Msa1439800:intron 25.0%
!!! GCATATCATTGTAGTTTTAA+AGG - tig0028866:24599-24618 None:intergenic 25.0%
! TTAAAACTACAATGATATGC+TGG + tig0028866:24599-24618 Msa1439800:intron 25.0%
! GGTCTTGATTATCTAAAAAT+AGG + tig0028866:24638-24657 Msa1439800:intron 25.0%
! GGATTAAAGATACAAGTAAT+AGG - tig0028866:25020-25039 None:intergenic 25.0%
ATGATATGAGTAACTCCATT+TGG - tig0028866:22535-22554 None:intergenic 30.0%
GTGTGTATATAGTTCTCTTA+AGG - tig0028866:22573-22592 None:intergenic 30.0%
CCATTCAATTTCATACAAGA+AGG - tig0028866:22666-22685 None:intergenic 30.0%
CCTTCTTGTATGAAATTGAA+TGG + tig0028866:22663-22682 Msa1439800:CDS 30.0%
AATTGAATACTATGCTACTG+TGG + tig0028866:22824-22843 Msa1439800:CDS 30.0%
ATTGAATACTATGCTACTGT+GGG + tig0028866:22825-22844 Msa1439800:CDS 30.0%
ACATAATTAAGCTCACACAT+TGG - tig0028866:22855-22874 None:intergenic 30.0%
AATTATGTTAAATCTGGGCT+TGG + tig0028866:22867-22886 Msa1439800:CDS 30.0%
ATAGTAGTTATAAACGTGCT+AGG + tig0028866:23078-23097 Msa1439800:CDS 30.0%
TTGTTGAGTTTGGACTTATA+AGG + tig0028866:23178-23197 Msa1439800:intron 30.0%
TGTTGAGTTTGGACTTATAA+GGG + tig0028866:23179-23198 Msa1439800:intron 30.0%
! TGTGAATTTCAGGTAATTAG+GGG + tig0028866:23206-23225 Msa1439800:intron 30.0%
AATTTAATACCTATCCGCAT+TGG - tig0028866:23269-23288 None:intergenic 30.0%
CTAACATATTTGATGCAGAT+AGG + tig0028866:23293-23312 Msa1439800:intron 30.0%
!! ATGTGATTTGCTACTAAACA+TGG + tig0028866:23456-23475 Msa1439800:intron 30.0%
TAAAAAATGTAGCAGACACT+TGG + tig0028866:23505-23524 Msa1439800:intron 30.0%
ACATTGGTAGAAAATATACC+GGG - tig0028866:23587-23606 None:intergenic 30.0%
! GTCTTTTCAATTGTAGATTG+CGG - tig0028866:23745-23764 None:intergenic 30.0%
ATCTACAATTGAAAAGACCA+TGG + tig0028866:23747-23766 Msa1439800:intron 30.0%
TTACATGACATGGTCAATAT+TGG - tig0028866:24172-24191 None:intergenic 30.0%
! CATACTGTGTTTTATCATGA+AGG - tig0028866:24232-24251 None:intergenic 30.0%
!! GCTACTTAAAATTTTGACAC+AGG + tig0028866:24297-24316 Msa1439800:intron 30.0%
CACAAGAAAAATGTTCACAA+AGG - tig0028866:24325-24344 None:intergenic 30.0%
! AACATTTTTCTTGTGCATCA+TGG + tig0028866:24330-24349 Msa1439800:intron 30.0%
CATTCATCTTAAATACCACT+CGG - tig0028866:24463-24482 None:intergenic 30.0%
! GAGTGGTATTTAAGATGAAT+GGG + tig0028866:24462-24481 Msa1439800:intron 30.0%
! AGTGGTATTTAAGATGAATG+GGG + tig0028866:24463-24482 Msa1439800:intron 30.0%
!!! ATGAAATGGACTTTTTTTGC+TGG + tig0028866:24717-24736 Msa1439800:three_prime_UTR 30.0%
!! TTAAAAGGGGTATTCTATTC+AGG - tig0028866:24835-24854 None:intergenic 30.0%
ATCCTCTTTACTCTTAAAAG+GGG - tig0028866:24848-24867 None:intergenic 30.0%
GATCCTCTTTACTCTTAAAA+GGG - tig0028866:24849-24868 None:intergenic 30.0%
TAATATATATCACTGCACCA+GGG - tig0028866:24875-24894 None:intergenic 30.0%
GCAGTGATATATATTAGACA+AGG + tig0028866:24879-24898 Msa1439800:three_prime_UTR 30.0%
TGATATATATTAGACAAGGC+TGG + tig0028866:24883-24902 Msa1439800:three_prime_UTR 30.0%
CCAAAATCATGATTCATCTT+TGG - tig0028866:25083-25102 None:intergenic 30.0%
! CCAAAGATGAATCATGATTT+TGG + tig0028866:25080-25099 Msa1439800:three_prime_UTR 30.0%
! AGATGAATCATGATTTTGGA+TGG + tig0028866:25084-25103 Msa1439800:three_prime_UTR 30.0%
ACACACCCTAAGATAGAAAA+TGG + tig0028866:22593-22612 Msa1439800:exon 35.0%
!!! GAGTGCCATTTTCTATCTTA+GGG - tig0028866:22601-22620 None:intergenic 35.0%
!!! AGAGTGCCATTTTCTATCTT+AGG - tig0028866:22602-22621 None:intergenic 35.0%
AGAAGGAAAACGGTTATGAA+CGG - tig0028866:22649-22668 None:intergenic 35.0%
CCAATACCAATTCCAACTAA+CGG - tig0028866:22750-22769 None:intergenic 35.0%
CGTTAGTTGGAATTGGTATT+GGG + tig0028866:22748-22767 Msa1439800:CDS 35.0%
TGGTTATTGCGATTATGTTG+AGG + tig0028866:22887-22906 Msa1439800:CDS 35.0%
GGTTATTGCGATTATGTTGA+GGG + tig0028866:22888-22907 Msa1439800:CDS 35.0%
ACATCAATAAGCTCTCCTAA+AGG - tig0028866:22930-22949 None:intergenic 35.0%
TAAGGGTGAATGTGAATTTC+AGG + tig0028866:23196-23215 Msa1439800:intron 35.0%
! ATTTCAGGTAATTAGGGGAT+TGG + tig0028866:23211-23230 Msa1439800:intron 35.0%
ATTGGTAGAAAATATACCGG+GGG - tig0028866:23585-23604 None:intergenic 35.0%
CATTGGTAGAAAATATACCG+GGG - tig0028866:23586-23605 None:intergenic 35.0%
!!! TGTAGCTGCTTGTTTTACAT+TGG - tig0028866:23603-23622 None:intergenic 35.0%
! ACCATGGATTTTATTAGGCT+GGG + tig0028866:23763-23782 Msa1439800:intron 35.0%
AATAGGTGACTGCAATATAC+CGG + tig0028866:23874-23893 Msa1439800:intron 35.0%
GATAAAACAATCTGAGTGCT+AGG - tig0028866:24072-24091 None:intergenic 35.0%
ATTGACCATGTCATGTAATC+AGG + tig0028866:24174-24193 Msa1439800:intron 35.0%
! CGAGTGGTATTTAAGATGAA+TGG + tig0028866:24461-24480 Msa1439800:intron 35.0%
GAATAGTAATTTGAGAGAGC+TGG - tig0028866:24785-24804 None:intergenic 35.0%
!! TACCCCTTTTAAGAGTAAAG+AGG + tig0028866:24843-24862 Msa1439800:three_prime_UTR 35.0%
GGATCCTCTTTACTCTTAAA+AGG - tig0028866:24850-24869 None:intergenic 35.0%
CTAATATATATCACTGCACC+AGG - tig0028866:24876-24895 None:intergenic 35.0%
TGCTGAGCATAACACCTTAT+TGG - tig0028866:22706-22725 None:intergenic 40.0%
AACGAAAAGAAGCCGTTAGT+TGG + tig0028866:22735-22754 Msa1439800:CDS 40.0%
AAGAAGCCGTTAGTTGGAAT+TGG + tig0028866:22741-22760 Msa1439800:CDS 40.0%
CCGTTAGTTGGAATTGGTAT+TGG + tig0028866:22747-22766 Msa1439800:CDS 40.0%
TATTGGGATTGTAGCAGCAT+GGG + tig0028866:22764-22783 Msa1439800:CDS 40.0%
ATTGTAGCAGCATGGGTAAT+GGG + tig0028866:22771-22790 Msa1439800:CDS 40.0%
!! AGCATGGGTAATGGGATTAA+CGG + tig0028866:22779-22798 Msa1439800:CDS 40.0%
! TGCGATTATGTTGAGGGTTT+TGG + tig0028866:22894-22913 Msa1439800:CDS 40.0%
!! TTTGGTGATGAAGCTCCTTT+AGG + tig0028866:22912-22931 Msa1439800:CDS 40.0%
GTAATTAGGGGATTGGATCA+GGG + tig0028866:23218-23237 Msa1439800:CDS 40.0%
! GGATTGGATCAGGGAATTTT+GGG + tig0028866:23227-23246 Msa1439800:CDS 40.0%
! GATTGGATCAGGGAATTTTG+GGG + tig0028866:23228-23247 Msa1439800:CDS 40.0%
! ATTGGATCAGGGAATTTTGG+GGG + tig0028866:23229-23248 Msa1439800:CDS 40.0%
TTAATACCTATCCGCATTGG+AGG - tig0028866:23266-23285 None:intergenic 40.0%
ATTCCTCCATTGTTAGCGTA+TGG + tig0028866:23376-23395 Msa1439800:CDS 40.0%
TTGGTAGAAAATATACCGGG+GGG - tig0028866:23584-23603 None:intergenic 40.0%
! GACCATGGATTTTATTAGGC+TGG + tig0028866:23762-23781 Msa1439800:intron 40.0%
TCCCAGCCTAATAAAATCCA+TGG - tig0028866:23767-23786 None:intergenic 40.0%
ATAGGTGACTGCAATATACC+GGG + tig0028866:23875-23894 Msa1439800:intron 40.0%
ATATGAACCGCACATGGATT+GGG + tig0028866:23990-24009 Msa1439800:three_prime_UTR 40.0%
AGAGCAAACAGAAAGTAAGC+TGG - tig0028866:24094-24113 None:intergenic 40.0%
AGCTTCCTGATTACATGACA+TGG - tig0028866:24182-24201 None:intergenic 40.0%
TTTGCTGACACACATGATCA+TGG + tig0028866:24263-24282 Msa1439800:intron 40.0%
CATCATTAACCTTATCCCAG+TGG + tig0028866:24394-24413 Msa1439800:intron 40.0%
TATACTGTTTGACAACCGAG+TGG + tig0028866:24445-24464 Msa1439800:intron 40.0%
!!! ACTTTTTTTGCTGGTGAGTG+TGG + tig0028866:24726-24745 Msa1439800:three_prime_UTR 40.0%
CTATTCCTGTTTAGTGCAGT+CGG + tig0028866:24799-24818 Msa1439800:three_prime_UTR 40.0%
CACAGAGGAAGAAGATCAAA+AGG - tig0028866:25041-25060 None:intergenic 40.0%
CTTTGGCATTTCATTGCAGA+CGG - tig0028866:25066-25085 None:intergenic 40.0%
CTCTCATTCTCACTCTGTTC+AGG + tig0028866:22618-22637 Msa1439800:CDS 45.0%
GTGTTATGCTCAGCACGTAA+CGG + tig0028866:22711-22730 Msa1439800:CDS 45.0%
GTATTGGGATTGTAGCAGCA+TGG + tig0028866:22763-22782 Msa1439800:CDS 45.0%
GATTGTAGCAGCATGGGTAA+TGG + tig0028866:22770-22789 Msa1439800:CDS 45.0%
TATACTGCTAGATTCGCCGA+TGG + tig0028866:23044-23063 Msa1439800:CDS 45.0%
ACACCAATACGCATAGTGAG+TGG - tig0028866:23104-23123 None:intergenic 45.0%
! CTCACTATGCGTATTGGTGT+TGG + tig0028866:23104-23123 Msa1439800:CDS 45.0%
!! TATGCGTATTGGTGTTGGCA+AGG + tig0028866:23109-23128 Msa1439800:CDS 45.0%
GGTAATTAGGGGATTGGATC+AGG + tig0028866:23217-23236 Msa1439800:intron 45.0%
! GGGATTGGATCAGGGAATTT+TGG + tig0028866:23226-23245 Msa1439800:CDS 45.0%
! TTGGATCAGGGAATTTTGGG+GGG + tig0028866:23230-23249 Msa1439800:CDS 45.0%
TCAGGACCATACGCTAACAA+TGG - tig0028866:23385-23404 None:intergenic 45.0%
TGGTAGAAAATATACCGGGG+GGG - tig0028866:23583-23602 None:intergenic 45.0%
AACAAGCAGCTACAGTGCTA+TGG + tig0028866:23609-23628 Msa1439800:intron 45.0%
TACAGAAGAGTTGCATTGCC+CGG - tig0028866:23896-23915 None:intergenic 45.0%
ATACGCATATGAACCGCACA+TGG + tig0028866:23984-24003 Msa1439800:three_prime_UTR 45.0%
CATATGAACCGCACATGGAT+TGG + tig0028866:23989-24008 Msa1439800:three_prime_UTR 45.0%
AAACTCACCCAATCCATGTG+CGG - tig0028866:24000-24019 None:intergenic 45.0%
TTAACCTTATCCCAGTGGCT+TGG + tig0028866:24399-24418 Msa1439800:intron 45.0%
GCTGGTATCTATGCATTCTC+TGG + tig0028866:24617-24636 Msa1439800:intron 45.0%
!! TGAGTGTGGATCGACTTGTT+AGG + tig0028866:24740-24759 Msa1439800:three_prime_UTR 45.0%
AATTTGAGAGAGCTGGAACC+AGG - tig0028866:24778-24797 None:intergenic 45.0%
TATGTCCGACTGCACTAAAC+AGG - tig0028866:24807-24826 None:intergenic 45.0%
ATATATCACTGCACCAGGGT+TGG - tig0028866:24871-24890 None:intergenic 45.0%
!! GGTAATGGGATTAACGGCGT+TGG + tig0028866:22785-22804 Msa1439800:CDS 50.0%
AGGCCACTCACTATGCGTAT+TGG + tig0028866:23098-23117 Msa1439800:CDS 50.0%
GGACCATACGCTAACAATGG+AGG - tig0028866:23382-23401 None:intergenic 50.0%
TAAGCCAAGCCACTGGGATA+AGG - tig0028866:24406-24425 None:intergenic 50.0%
GACGAATAAGCCAAGCCACT+GGG - tig0028866:24412-24431 None:intergenic 50.0%
TGACGAATAAGCCAAGCCAC+TGG - tig0028866:24413-24432 None:intergenic 50.0%
GTTAGGCAGATTCTCCTTCC+TGG + tig0028866:24757-24776 Msa1439800:three_prime_UTR 50.0%
GAGTAAAGAGGATCCAACCC+TGG + tig0028866:24855-24874 Msa1439800:three_prime_UTR 50.0%
! GGGATTAACGGCGTTGGATG+CGG + tig0028866:22791-22810 Msa1439800:CDS 55.0%
!! CAGGGAATTTTGGGGGGTGA+AGG + tig0028866:23236-23255 Msa1439800:CDS 55.0%
! GTGAAGGCGTACCTCCAATG+CGG + tig0028866:23252-23271 Msa1439800:CDS 55.0%
AAACCTGAGAAGCAGCCTGC+AGG - tig0028866:23409-23428 None:intergenic 55.0%
TGAGAGAGCTGGAACCAGGA+AGG - tig0028866:24774-24793 None:intergenic 55.0%
TCATTGCAGACGGCACACAG+AGG - tig0028866:25056-25075 None:intergenic 55.0%
GGCGTACCTCCAATGCGGAT+AGG + tig0028866:23257-23276 Msa1439800:CDS 60.0%
GCGTATGGTCCTGAACCTGC+AGG + tig0028866:23391-23410 Msa1439800:CDS 60.0%
GAGAAGCAGCCTGCAGGTTC+AGG - tig0028866:23403-23422 None:intergenic 60.0%
GAACCTGCAGGCTGCTTCTC+AGG + tig0028866:23403-23422 Msa1439800:CDS 60.0%
CCATTGTGCGTACGCCCCCC+CGG + tig0028866:23566-23585 Msa1439800:intron 70.0%
! CCGGGGGGGCGTACGCACAA+TGG - tig0028866:23569-23588 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0028866 gene 22520 25144 22520 ID=Msa1439800;Name=Msa1439800
tig0028866 mRNA 22520 25144 22520 ID=Msa1439800-mRNA-1;Parent=Msa1439800;Name=Msa1439800-mRNA-1;_AED=0.07;_eAED=0.07;_QI=92|1|1|1|0.8|0.66|6|482|213
tig0028866 exon 22520 22947 22520 ID=Msa1439800-mRNA-1:exon:11942;Parent=Msa1439800-mRNA-1
tig0028866 exon 23038 23130 23038 ID=Msa1439800-mRNA-1:exon:11943;Parent=Msa1439800-mRNA-1
tig0028866 exon 23218 23278 23218 ID=Msa1439800-mRNA-1:exon:11944;Parent=Msa1439800-mRNA-1
tig0028866 exon 23356 23424 23356 ID=Msa1439800-mRNA-1:exon:11945;Parent=Msa1439800-mRNA-1
tig0028866 exon 23879 24011 23879 ID=Msa1439800-mRNA-1:exon:11946;Parent=Msa1439800-mRNA-1
tig0028866 exon 24713 25144 24713 ID=Msa1439800-mRNA-1:exon:11947;Parent=Msa1439800-mRNA-1
tig0028866 five_prime_UTR 22520 22611 22520 ID=Msa1439800-mRNA-1:five_prime_utr;Parent=Msa1439800-mRNA-1
tig0028866 CDS 22612 22947 22612 ID=Msa1439800-mRNA-1:cds;Parent=Msa1439800-mRNA-1
tig0028866 CDS 23038 23130 23038 ID=Msa1439800-mRNA-1:cds;Parent=Msa1439800-mRNA-1
tig0028866 CDS 23218 23278 23218 ID=Msa1439800-mRNA-1:cds;Parent=Msa1439800-mRNA-1
tig0028866 CDS 23356 23424 23356 ID=Msa1439800-mRNA-1:cds;Parent=Msa1439800-mRNA-1
tig0028866 CDS 23879 23961 23879 ID=Msa1439800-mRNA-1:cds;Parent=Msa1439800-mRNA-1
tig0028866 three_prime_UTR 23962 24011 23962 ID=Msa1439800-mRNA-1:three_prime_utr;Parent=Msa1439800-mRNA-1
tig0028866 three_prime_UTR 24713 25144 24713 ID=Msa1439800-mRNA-1:three_prime_utr;Parent=Msa1439800-mRNA-1
Gene Sequence

>Msa1439800

ATGGCACTCTCATTCTCACTCTGTTCAGGCGCAACCGTTCATAACCGTTTTCCTTCTTGTATGAAATTGAATGGTAAAAGCTATAAAGTATCCAATAAGGTGTTATGCTCAGCACGTAACGGTAACGAAAAGAAGCCGTTAGTTGGAATTGGTATTGGGATTGTAGCAGCATGGGTAATGGGATTAACGGCGTTGGATGCGGATGCAACGAGAATTGAATACTATGCTACTGTGGGAGAGCCAATGTGTGAGCTTAATTATGTTAAATCTGGGCTTGGTTATTGCGATTATGTTGAGGGTTTTGGTGATGAAGCTCCTTTAGGAGAGCTTATTGATATTCACTATACTGCTAGATTCGCCGATGGAATAGTATTTGATAGTAGTTATAAACGTGCTAGGCCACTCACTATGCGTATTGGTGTTGGCAAGGTAATTAGGGGATTGGATCAGGGAATTTTGGGGGGTGAAGGCGTACCTCCAATGCGGATAGGTGGGAAACGCAAACTCATGATTCCTCCATTGTTAGCGTATGGTCCTGAACCTGCAGGCTGCTTCTCAGGTGACTGCAATATACCGGGCAATGCAACTCTTCTGTATGATATTAAATTTGTTGGTCTTTATTCGGGCAATCGAAGTCAATGA

Protein sequence

>Msa1439800

MALSFSLCSGATVHNRFPSCMKLNGKSYKVSNKVLCSARNGNEKKPLVGIGIGIVAAWVMGLTALDADATRIEYYATVGEPMCELNYVKSGLGYCDYVEGFGDEAPLGELIDIHYTARFADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMRIGGKRKLMIPPLLAYGPEPAGCFSGDCNIPGNATLLYDIKFVGLYSGNRSQ*