AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0152380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0152380 MtrunA17_Chr1g0161421 94.767 172 9 0 1 172 1 172 1.31e-113 320
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0152380 AT2G01755.1 57.627 118 50 0 54 171 56 173 2.98e-42 139
Msa0152380 AT2G01755.2 57.627 118 50 0 54 171 62 179 3.96e-42 139

Find 76 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTTGTTTAAGCAAATA+AGG 0.209339 1_4:+14992879 Msa0152380:five_prime_UTR
AAGTCTATAGATAGAATAAA+AGG 0.213144 1_4:+14993604 Msa0152380:CDS
ATGGTCCATTGCATCAAATT+TGG 0.268744 1_4:-14993924 None:intergenic
AACCAAGGGTGGGAGGAATT+TGG 0.276261 1_4:-14992863 None:intergenic
ACCAAAGGCTTATACCTCTT+TGG 0.304276 1_4:-14993093 None:intergenic
TGCATATTGTATGGTAAATA+TGG 0.313570 1_4:-14992932 None:intergenic
TCAAATATTGGTCGCAACTA+TGG 0.319270 1_4:+14993826 Msa0152380:three_prime_UTR
TAAGTACTTCTACTTCATTT+TGG 0.333138 1_4:-14993258 None:intergenic
AACGTTGGGAATGACACTTT+TGG 0.355154 1_4:-14992794 None:intergenic
GGAAAGTTGTCAATTGATAA+TGG 0.357903 1_4:-14993019 None:intergenic
CCATGGCATCATTGTCCATT+TGG 0.363669 1_4:-14992981 None:intergenic
AAATTGTGTTCTTAAGCATA+TGG 0.369867 1_4:+14993970 Msa0152380:three_prime_UTR
AAATGTTCGACATCAAATAT+TGG 0.371113 1_4:+14993814 Msa0152380:three_prime_UTR
AGAATGCTTCTTGTTGGGTC+AGG 0.383377 1_4:-14993562 None:intergenic
GAAGATAGAGATGATGAGTA+TGG 0.389990 1_4:+14993154 Msa0152380:CDS
TTGGAAATGTCTTGAAGATA+AGG 0.391167 1_4:-14992844 None:intergenic
GCTGGAAGAATGCTTCTTGT+TGG 0.394629 1_4:-14993568 None:intergenic
CTTCTGCAGATACTCAATAT+TGG 0.406034 1_4:-14993641 None:intergenic
CTGGAAGAATGCTTCTTGTT+GGG 0.406470 1_4:-14993567 None:intergenic
GACTTTATCACTGCCCTGGC+TGG 0.412026 1_4:-14993586 None:intergenic
TGTCCATTTGGCCATACCCT+TGG 0.430122 1_4:-14992969 None:intergenic
CAATGAGGAGATTTCAAAGT+TGG 0.430947 1_4:+14993180 Msa0152380:CDS
TCAATATTGGCAGGGTCAAA+AGG 0.439860 1_4:-14993628 None:intergenic
GTCCATTTGGCCATACCCTT+GGG 0.442034 1_4:-14992968 None:intergenic
CTCTATCTTCATCCTCATCT+TGG 0.448503 1_4:-14993141 None:intergenic
TTGTCAATTGATAATGGTAT+AGG 0.449082 1_4:-14993013 None:intergenic
TGCAGATACTCAATATTGGC+AGG 0.450870 1_4:-14993637 None:intergenic
AGTAGAAGTACTTATCTTCA+AGG 0.451782 1_4:+14993267 Msa0152380:CDS
ATAAGGTTGGGATAGTGCTT+TGG 0.456496 1_4:-14992827 None:intergenic
AAATGTCTTGAAGATAAGGT+TGG 0.462844 1_4:-14992840 None:intergenic
TTCCAAATTCCTCCCACCCT+TGG 0.463956 1_4:+14992861 Msa0152380:five_prime_UTR
TTCCCAAGGGTATGGCCAAA+TGG 0.469349 1_4:+14992966 Msa0152380:CDS
ACCAAAGAGGTATAAGCCTT+TGG 0.474169 1_4:+14993092 Msa0152380:CDS
ATACCCTTGGGAAGTGTAGT+AGG 0.478990 1_4:-14992956 None:intergenic
GGACAATGATGCCATGGCCT+AGG 0.481592 1_4:+14992987 Msa0152380:CDS
TTGAACCAAATTTGATGCAA+TGG 0.481681 1_4:+14993919 Msa0152380:three_prime_UTR
CAAGAAGCATTCTTCCAGCC+AGG 0.483504 1_4:+14993572 Msa0152380:CDS
TTGGCAATTACACAAACGTT+GGG 0.487876 1_4:-14992808 None:intergenic
GTAGTAGGATGCATATTGTA+TGG 0.494568 1_4:-14992941 None:intergenic
GAATGCTTCTTGTTGGGTCA+GGG 0.497042 1_4:-14993561 None:intergenic
CACAAGCTTACATTGTGAGT+TGG 0.506810 1_4:-14993040 None:intergenic
AATGTCTTGAAGATAAGGTT+GGG 0.509719 1_4:-14992839 None:intergenic
AGTCTATAGATAGAATAAAA+GGG 0.523947 1_4:+14993605 Msa0152380:CDS
GCCTCCTTGCACCACACCAA+AGG 0.530257 1_4:-14993108 None:intergenic
AATGCTTCTTGTTGGGTCAG+GGG 0.544161 1_4:-14993560 None:intergenic
TACTACACTTCCCAAGGGTA+TGG 0.545556 1_4:+14992958 Msa0152380:CDS
TTATTTGCTTAAACAACCAA+GGG 0.547759 1_4:-14992877 None:intergenic
TTTGCTTAAACAACCAAGGG+TGG 0.551464 1_4:-14992874 None:intergenic
TTTGTCTTGAATTCTTCCCA+TGG 0.554335 1_4:-14993670 None:intergenic
ATCTGCAGAAGGATGTTCCA+TGG 0.555118 1_4:+14993653 Msa0152380:CDS
TCAACCATGCCACACAATGA+TGG 0.559292 1_4:-14993943 None:intergenic
GATAATGGTATAGGTAGCCT+AGG 0.559854 1_4:-14993004 None:intergenic
CTTATTTGCTTAAACAACCA+AGG 0.560626 1_4:-14992878 None:intergenic
TATAGACTTTATCACTGCCC+TGG 0.571801 1_4:-14993590 None:intergenic
TTTGGCAATTACACAAACGT+TGG 0.572622 1_4:-14992809 None:intergenic
TAAGCCTTTGGTGTGGTGCA+AGG 0.575947 1_4:+14993104 Msa0152380:CDS
ACTCATTGTTCATGCACTTG+TGG 0.576626 1_4:+14993234 Msa0152380:CDS
TTGCTTAAACAACCAAGGGT+GGG 0.587358 1_4:-14992873 None:intergenic
GCATCCTACTACACTTCCCA+AGG 0.594031 1_4:+14992952 Msa0152380:CDS
CTTAAACAACCAAGGGTGGG+AGG 0.601645 1_4:-14992870 None:intergenic
AAGAAGCATTCTTCCAGCCA+GGG 0.602074 1_4:+14993573 Msa0152380:CDS
TTCTATAGTCAATCAGCAAG+AGG 0.607447 1_4:+14993205 Msa0152380:CDS
AGGGGAAGTACCATAGCTCA+AGG 0.608247 1_4:-14993542 None:intergenic
TGGACCATCATTGTGTGGCA+TGG 0.612007 1_4:+14993939 Msa0152380:three_prime_UTR
TCTGCAGAAGGATGTTCCAT+GGG 0.613447 1_4:+14993654 Msa0152380:CDS
CAATATTGAGTATCTGCAGA+AGG 0.617485 1_4:+14993642 Msa0152380:CDS
CATCCTACTACACTTCCCAA+GGG 0.625588 1_4:+14992953 Msa0152380:CDS
CCAAATGGACAATGATGCCA+TGG 0.626699 1_4:+14992981 Msa0152380:CDS
GGTATAGGTAGCCTAGGCCA+TGG 0.632885 1_4:-14992998 None:intergenic
GCAAATTAGATACCAAGATG+AGG 0.635629 1_4:+14993129 Msa0152380:CDS
GCAGATACTCAATATTGGCA+GGG 0.648369 1_4:-14993636 None:intergenic
TTAGATTTGAGCAACCAAAG+AGG 0.657562 1_4:+14993079 Msa0152380:CDS
TGATGAGTATGGACACAATG+AGG 0.668828 1_4:+14993165 Msa0152380:CDS
GCCTTTGGTGTGGTGCAAGG+AGG 0.677190 1_4:+14993107 Msa0152380:CDS
TGCAATGGACCATCATTGTG+TGG 0.707267 1_4:+14993934 Msa0152380:three_prime_UTR
AGAGGTATAAGCCTTTGGTG+TGG 0.717085 1_4:+14993097 Msa0152380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAATTTGTTTGTTTTAT+TGG - chr1_4:14993346-14993365 None:intergenic 10.0%
!!! TTTTTTTTCTAATTAGAAAA+AGG + chr1_4:14993388-14993407 Msa0152380:intron 10.0%
!!! AAATAATTTGTTTGTTTTAT+TGG - chr1_4:14993346-14993365 None:intergenic 10.0%
!!! TTTTTTTTCTAATTAGAAAA+AGG + chr1_4:14993388-14993407 Msa0152380:intron 10.0%
!!! TTGTTTGTTTTATTGGTTAT+TGG - chr1_4:14993339-14993358 None:intergenic 20.0%
!! AAGTCTATAGATAGAATAAA+AGG + chr1_4:14993604-14993623 Msa0152380:CDS 20.0%
!! AGTCTATAGATAGAATAAAA+GGG + chr1_4:14993605-14993624 Msa0152380:CDS 20.0%
!!! TTGTTTGTTTTATTGGTTAT+TGG - chr1_4:14993339-14993358 None:intergenic 20.0%
!! AAGTCTATAGATAGAATAAA+AGG + chr1_4:14993604-14993623 Msa0152380:CDS 20.0%
!! AGTCTATAGATAGAATAAAA+GGG + chr1_4:14993605-14993624 Msa0152380:CDS 20.0%
! TTATTTGCTTAAACAACCAA+GGG - chr1_4:14992880-14992899 None:intergenic 25.0%
! TGCATATTGTATGGTAAATA+TGG - chr1_4:14992935-14992954 None:intergenic 25.0%
!!! TTGTCAATTGATAATGGTAT+AGG - chr1_4:14993016-14993035 None:intergenic 25.0%
!! TAAGTACTTCTACTTCATTT+TGG - chr1_4:14993261-14993280 None:intergenic 25.0%
! CCATTTGCAAAACAAAAATT+TGG - chr1_4:14993445-14993464 None:intergenic 25.0%
!!! CCAAATTTTTGTTTTGCAAA+TGG + chr1_4:14993442-14993461 Msa0152380:intron 25.0%
! AAATGTTCGACATCAAATAT+TGG + chr1_4:14993814-14993833 Msa0152380:three_prime_UTR 25.0%
! AAATTGTGTTCTTAAGCATA+TGG + chr1_4:14993970-14993989 Msa0152380:three_prime_UTR 25.0%
! TTATTTGCTTAAACAACCAA+GGG - chr1_4:14992880-14992899 None:intergenic 25.0%
! TGCATATTGTATGGTAAATA+TGG - chr1_4:14992935-14992954 None:intergenic 25.0%
!!! TTGTCAATTGATAATGGTAT+AGG - chr1_4:14993016-14993035 None:intergenic 25.0%
!! TAAGTACTTCTACTTCATTT+TGG - chr1_4:14993261-14993280 None:intergenic 25.0%
! CCATTTGCAAAACAAAAATT+TGG - chr1_4:14993445-14993464 None:intergenic 25.0%
!!! CCAAATTTTTGTTTTGCAAA+TGG + chr1_4:14993442-14993461 Msa0152380:intron 25.0%
! AAATGTTCGACATCAAATAT+TGG + chr1_4:14993814-14993833 Msa0152380:three_prime_UTR 25.0%
! AAATTGTGTTCTTAAGCATA+TGG + chr1_4:14993970-14993989 Msa0152380:three_prime_UTR 25.0%
AATGTCTTGAAGATAAGGTT+GGG - chr1_4:14992842-14992861 None:intergenic 30.0%
AAATGTCTTGAAGATAAGGT+TGG - chr1_4:14992843-14992862 None:intergenic 30.0%
TTGGAAATGTCTTGAAGATA+AGG - chr1_4:14992847-14992866 None:intergenic 30.0%
CTTATTTGCTTAAACAACCA+AGG - chr1_4:14992881-14992900 None:intergenic 30.0%
CTTGGTTGTTTAAGCAAATA+AGG + chr1_4:14992879-14992898 Msa0152380:five_prime_UTR 30.0%
GGAAAGTTGTCAATTGATAA+TGG - chr1_4:14993022-14993041 None:intergenic 30.0%
!! AGTAGAAGTACTTATCTTCA+AGG + chr1_4:14993267-14993286 Msa0152380:CDS 30.0%
ACTTATCTTCAAGGTAAGTT+TGG + chr1_4:14993276-14993295 Msa0152380:intron 30.0%
TGACAAACCATTTCATTTCA+GGG + chr1_4:14993508-14993527 Msa0152380:intron 30.0%
TTGAACCAAATTTGATGCAA+TGG + chr1_4:14993919-14993938 Msa0152380:three_prime_UTR 30.0%
AATGTCTTGAAGATAAGGTT+GGG - chr1_4:14992842-14992861 None:intergenic 30.0%
AAATGTCTTGAAGATAAGGT+TGG - chr1_4:14992843-14992862 None:intergenic 30.0%
TTGGAAATGTCTTGAAGATA+AGG - chr1_4:14992847-14992866 None:intergenic 30.0%
CTTATTTGCTTAAACAACCA+AGG - chr1_4:14992881-14992900 None:intergenic 30.0%
CTTGGTTGTTTAAGCAAATA+AGG + chr1_4:14992879-14992898 Msa0152380:five_prime_UTR 30.0%
GGAAAGTTGTCAATTGATAA+TGG - chr1_4:14993022-14993041 None:intergenic 30.0%
!! AGTAGAAGTACTTATCTTCA+AGG + chr1_4:14993267-14993286 Msa0152380:CDS 30.0%
ACTTATCTTCAAGGTAAGTT+TGG + chr1_4:14993276-14993295 Msa0152380:intron 30.0%
TGACAAACCATTTCATTTCA+GGG + chr1_4:14993508-14993527 Msa0152380:intron 30.0%
TTGAACCAAATTTGATGCAA+TGG + chr1_4:14993919-14993938 Msa0152380:three_prime_UTR 30.0%
TTGGCAATTACACAAACGTT+GGG - chr1_4:14992811-14992830 None:intergenic 35.0%
TTTGGCAATTACACAAACGT+TGG - chr1_4:14992812-14992831 None:intergenic 35.0%
GTAGTAGGATGCATATTGTA+TGG - chr1_4:14992944-14992963 None:intergenic 35.0%
TTAGATTTGAGCAACCAAAG+AGG + chr1_4:14993079-14993098 Msa0152380:CDS 35.0%
GCAAATTAGATACCAAGATG+AGG + chr1_4:14993129-14993148 Msa0152380:CDS 35.0%
GAAGATAGAGATGATGAGTA+TGG + chr1_4:14993154-14993173 Msa0152380:CDS 35.0%
CAATGAGGAGATTTCAAAGT+TGG + chr1_4:14993180-14993199 Msa0152380:CDS 35.0%
TTCTATAGTCAATCAGCAAG+AGG + chr1_4:14993205-14993224 Msa0152380:CDS 35.0%
GTGACAAACCATTTCATTTC+AGG + chr1_4:14993507-14993526 Msa0152380:intron 35.0%
GACAAACCATTTCATTTCAG+GGG + chr1_4:14993509-14993528 Msa0152380:intron 35.0%
AGAAAACCCCTGAAATGAAA+TGG - chr1_4:14993518-14993537 None:intergenic 35.0%
! TTTTCTTCATCCTTGAGCTA+TGG + chr1_4:14993532-14993551 Msa0152380:CDS 35.0%
CTTCTGCAGATACTCAATAT+TGG - chr1_4:14993644-14993663 None:intergenic 35.0%
CAATATTGAGTATCTGCAGA+AGG + chr1_4:14993642-14993661 Msa0152380:CDS 35.0%
TTTGTCTTGAATTCTTCCCA+TGG - chr1_4:14993673-14993692 None:intergenic 35.0%
TCAAATATTGGTCGCAACTA+TGG + chr1_4:14993826-14993845 Msa0152380:three_prime_UTR 35.0%
ATGGTCCATTGCATCAAATT+TGG - chr1_4:14993927-14993946 None:intergenic 35.0%
TTGGCAATTACACAAACGTT+GGG - chr1_4:14992811-14992830 None:intergenic 35.0%
TTTGGCAATTACACAAACGT+TGG - chr1_4:14992812-14992831 None:intergenic 35.0%
GTAGTAGGATGCATATTGTA+TGG - chr1_4:14992944-14992963 None:intergenic 35.0%
TTAGATTTGAGCAACCAAAG+AGG + chr1_4:14993079-14993098 Msa0152380:CDS 35.0%
GCAAATTAGATACCAAGATG+AGG + chr1_4:14993129-14993148 Msa0152380:CDS 35.0%
GAAGATAGAGATGATGAGTA+TGG + chr1_4:14993154-14993173 Msa0152380:CDS 35.0%
CAATGAGGAGATTTCAAAGT+TGG + chr1_4:14993180-14993199 Msa0152380:CDS 35.0%
TTCTATAGTCAATCAGCAAG+AGG + chr1_4:14993205-14993224 Msa0152380:CDS 35.0%
GTGACAAACCATTTCATTTC+AGG + chr1_4:14993507-14993526 Msa0152380:intron 35.0%
GACAAACCATTTCATTTCAG+GGG + chr1_4:14993509-14993528 Msa0152380:intron 35.0%
AGAAAACCCCTGAAATGAAA+TGG - chr1_4:14993518-14993537 None:intergenic 35.0%
! TTTTCTTCATCCTTGAGCTA+TGG + chr1_4:14993532-14993551 Msa0152380:CDS 35.0%
CTTCTGCAGATACTCAATAT+TGG - chr1_4:14993644-14993663 None:intergenic 35.0%
CAATATTGAGTATCTGCAGA+AGG + chr1_4:14993642-14993661 Msa0152380:CDS 35.0%
TTTGTCTTGAATTCTTCCCA+TGG - chr1_4:14993673-14993692 None:intergenic 35.0%
TCAAATATTGGTCGCAACTA+TGG + chr1_4:14993826-14993845 Msa0152380:three_prime_UTR 35.0%
ATGGTCCATTGCATCAAATT+TGG - chr1_4:14993927-14993946 None:intergenic 35.0%
! ACGTTGGGAATGACACTTTT+GGG - chr1_4:14992796-14992815 None:intergenic 40.0%
! AACGTTGGGAATGACACTTT+TGG - chr1_4:14992797-14992816 None:intergenic 40.0%
ATAAGGTTGGGATAGTGCTT+TGG - chr1_4:14992830-14992849 None:intergenic 40.0%
TTGCTTAAACAACCAAGGGT+GGG - chr1_4:14992876-14992895 None:intergenic 40.0%
TTTGCTTAAACAACCAAGGG+TGG - chr1_4:14992877-14992896 None:intergenic 40.0%
! GATAATGGTATAGGTAGCCT+AGG - chr1_4:14993007-14993026 None:intergenic 40.0%
CACAAGCTTACATTGTGAGT+TGG - chr1_4:14993043-14993062 None:intergenic 40.0%
! ACCAAAGAGGTATAAGCCTT+TGG + chr1_4:14993092-14993111 Msa0152380:CDS 40.0%
ACCAAAGGCTTATACCTCTT+TGG - chr1_4:14993096-14993115 None:intergenic 40.0%
CTCTATCTTCATCCTCATCT+TGG - chr1_4:14993144-14993163 None:intergenic 40.0%
TGATGAGTATGGACACAATG+AGG + chr1_4:14993165-14993184 Msa0152380:CDS 40.0%
ACTCATTGTTCATGCACTTG+TGG + chr1_4:14993234-14993253 Msa0152380:CDS 40.0%
CTGGAAGAATGCTTCTTGTT+GGG - chr1_4:14993570-14993589 None:intergenic 40.0%
TATAGACTTTATCACTGCCC+TGG - chr1_4:14993593-14993612 None:intergenic 40.0%
TCAATATTGGCAGGGTCAAA+AGG - chr1_4:14993631-14993650 None:intergenic 40.0%
GCAGATACTCAATATTGGCA+GGG - chr1_4:14993639-14993658 None:intergenic 40.0%
TGCAGATACTCAATATTGGC+AGG - chr1_4:14993640-14993659 None:intergenic 40.0%
! ACGTTGGGAATGACACTTTT+GGG - chr1_4:14992796-14992815 None:intergenic 40.0%
! AACGTTGGGAATGACACTTT+TGG - chr1_4:14992797-14992816 None:intergenic 40.0%
ATAAGGTTGGGATAGTGCTT+TGG - chr1_4:14992830-14992849 None:intergenic 40.0%
TTGCTTAAACAACCAAGGGT+GGG - chr1_4:14992876-14992895 None:intergenic 40.0%
TTTGCTTAAACAACCAAGGG+TGG - chr1_4:14992877-14992896 None:intergenic 40.0%
! GATAATGGTATAGGTAGCCT+AGG - chr1_4:14993007-14993026 None:intergenic 40.0%
CACAAGCTTACATTGTGAGT+TGG - chr1_4:14993043-14993062 None:intergenic 40.0%
! ACCAAAGAGGTATAAGCCTT+TGG + chr1_4:14993092-14993111 Msa0152380:CDS 40.0%
ACCAAAGGCTTATACCTCTT+TGG - chr1_4:14993096-14993115 None:intergenic 40.0%
CTCTATCTTCATCCTCATCT+TGG - chr1_4:14993144-14993163 None:intergenic 40.0%
TGATGAGTATGGACACAATG+AGG + chr1_4:14993165-14993184 Msa0152380:CDS 40.0%
ACTCATTGTTCATGCACTTG+TGG + chr1_4:14993234-14993253 Msa0152380:CDS 40.0%
CTGGAAGAATGCTTCTTGTT+GGG - chr1_4:14993570-14993589 None:intergenic 40.0%
TATAGACTTTATCACTGCCC+TGG - chr1_4:14993593-14993612 None:intergenic 40.0%
TCAATATTGGCAGGGTCAAA+AGG - chr1_4:14993631-14993650 None:intergenic 40.0%
GCAGATACTCAATATTGGCA+GGG - chr1_4:14993639-14993658 None:intergenic 40.0%
TGCAGATACTCAATATTGGC+AGG - chr1_4:14993640-14993659 None:intergenic 40.0%
CATCCTACTACACTTCCCAA+GGG + chr1_4:14992953-14992972 Msa0152380:CDS 45.0%
! ATACCCTTGGGAAGTGTAGT+AGG - chr1_4:14992959-14992978 None:intergenic 45.0%
TACTACACTTCCCAAGGGTA+TGG + chr1_4:14992958-14992977 Msa0152380:CDS 45.0%
CCATGGCATCATTGTCCATT+TGG - chr1_4:14992984-14993003 None:intergenic 45.0%
CCAAATGGACAATGATGCCA+TGG + chr1_4:14992981-14993000 Msa0152380:CDS 45.0%
! AGAGGTATAAGCCTTTGGTG+TGG + chr1_4:14993097-14993116 Msa0152380:CDS 45.0%
AATGCTTCTTGTTGGGTCAG+GGG - chr1_4:14993563-14993582 None:intergenic 45.0%
GAATGCTTCTTGTTGGGTCA+GGG - chr1_4:14993564-14993583 None:intergenic 45.0%
AGAATGCTTCTTGTTGGGTC+AGG - chr1_4:14993565-14993584 None:intergenic 45.0%
GCTGGAAGAATGCTTCTTGT+TGG - chr1_4:14993571-14993590 None:intergenic 45.0%
!! AAGAAGCATTCTTCCAGCCA+GGG + chr1_4:14993573-14993592 Msa0152380:CDS 45.0%
ATCTGCAGAAGGATGTTCCA+TGG + chr1_4:14993653-14993672 Msa0152380:CDS 45.0%
TCTGCAGAAGGATGTTCCAT+GGG + chr1_4:14993654-14993673 Msa0152380:CDS 45.0%
TGCAATGGACCATCATTGTG+TGG + chr1_4:14993934-14993953 Msa0152380:three_prime_UTR 45.0%
TCAACCATGCCACACAATGA+TGG - chr1_4:14993946-14993965 None:intergenic 45.0%
CATCCTACTACACTTCCCAA+GGG + chr1_4:14992953-14992972 Msa0152380:CDS 45.0%
! ATACCCTTGGGAAGTGTAGT+AGG - chr1_4:14992959-14992978 None:intergenic 45.0%
TACTACACTTCCCAAGGGTA+TGG + chr1_4:14992958-14992977 Msa0152380:CDS 45.0%
CCATGGCATCATTGTCCATT+TGG - chr1_4:14992984-14993003 None:intergenic 45.0%
CCAAATGGACAATGATGCCA+TGG + chr1_4:14992981-14993000 Msa0152380:CDS 45.0%
! AGAGGTATAAGCCTTTGGTG+TGG + chr1_4:14993097-14993116 Msa0152380:CDS 45.0%
AATGCTTCTTGTTGGGTCAG+GGG - chr1_4:14993563-14993582 None:intergenic 45.0%
GAATGCTTCTTGTTGGGTCA+GGG - chr1_4:14993564-14993583 None:intergenic 45.0%
AGAATGCTTCTTGTTGGGTC+AGG - chr1_4:14993565-14993584 None:intergenic 45.0%
GCTGGAAGAATGCTTCTTGT+TGG - chr1_4:14993571-14993590 None:intergenic 45.0%
!! AAGAAGCATTCTTCCAGCCA+GGG + chr1_4:14993573-14993592 Msa0152380:CDS 45.0%
ATCTGCAGAAGGATGTTCCA+TGG + chr1_4:14993653-14993672 Msa0152380:CDS 45.0%
TCTGCAGAAGGATGTTCCAT+GGG + chr1_4:14993654-14993673 Msa0152380:CDS 45.0%
TGCAATGGACCATCATTGTG+TGG + chr1_4:14993934-14993953 Msa0152380:three_prime_UTR 45.0%
TCAACCATGCCACACAATGA+TGG - chr1_4:14993946-14993965 None:intergenic 45.0%
TTCCAAATTCCTCCCACCCT+TGG + chr1_4:14992861-14992880 Msa0152380:five_prime_UTR 50.0%
AACCAAGGGTGGGAGGAATT+TGG - chr1_4:14992866-14992885 None:intergenic 50.0%
CTTAAACAACCAAGGGTGGG+AGG - chr1_4:14992873-14992892 None:intergenic 50.0%
GCATCCTACTACACTTCCCA+AGG + chr1_4:14992952-14992971 Msa0152380:CDS 50.0%
! TTCCCAAGGGTATGGCCAAA+TGG + chr1_4:14992966-14992985 Msa0152380:CDS 50.0%
GTCCATTTGGCCATACCCTT+GGG - chr1_4:14992971-14992990 None:intergenic 50.0%
TGTCCATTTGGCCATACCCT+TGG - chr1_4:14992972-14992991 None:intergenic 50.0%
! TAAGCCTTTGGTGTGGTGCA+AGG + chr1_4:14993104-14993123 Msa0152380:CDS 50.0%
!! AGGGGAAGTACCATAGCTCA+AGG - chr1_4:14993545-14993564 None:intergenic 50.0%
!! CAAGAAGCATTCTTCCAGCC+AGG + chr1_4:14993572-14993591 Msa0152380:CDS 50.0%
TGGACCATCATTGTGTGGCA+TGG + chr1_4:14993939-14993958 Msa0152380:three_prime_UTR 50.0%
TTCCAAATTCCTCCCACCCT+TGG + chr1_4:14992861-14992880 Msa0152380:five_prime_UTR 50.0%
AACCAAGGGTGGGAGGAATT+TGG - chr1_4:14992866-14992885 None:intergenic 50.0%
CTTAAACAACCAAGGGTGGG+AGG - chr1_4:14992873-14992892 None:intergenic 50.0%
GCATCCTACTACACTTCCCA+AGG + chr1_4:14992952-14992971 Msa0152380:CDS 50.0%
! TTCCCAAGGGTATGGCCAAA+TGG + chr1_4:14992966-14992985 Msa0152380:CDS 50.0%
GTCCATTTGGCCATACCCTT+GGG - chr1_4:14992971-14992990 None:intergenic 50.0%
TGTCCATTTGGCCATACCCT+TGG - chr1_4:14992972-14992991 None:intergenic 50.0%
! TAAGCCTTTGGTGTGGTGCA+AGG + chr1_4:14993104-14993123 Msa0152380:CDS 50.0%
!! AGGGGAAGTACCATAGCTCA+AGG - chr1_4:14993545-14993564 None:intergenic 50.0%
!! CAAGAAGCATTCTTCCAGCC+AGG + chr1_4:14993572-14993591 Msa0152380:CDS 50.0%
TGGACCATCATTGTGTGGCA+TGG + chr1_4:14993939-14993958 Msa0152380:three_prime_UTR 50.0%
GGACAATGATGCCATGGCCT+AGG + chr1_4:14992987-14993006 Msa0152380:CDS 55.0%
GGTATAGGTAGCCTAGGCCA+TGG - chr1_4:14993001-14993020 None:intergenic 55.0%
GACTTTATCACTGCCCTGGC+TGG - chr1_4:14993589-14993608 None:intergenic 55.0%
GGACAATGATGCCATGGCCT+AGG + chr1_4:14992987-14993006 Msa0152380:CDS 55.0%
GGTATAGGTAGCCTAGGCCA+TGG - chr1_4:14993001-14993020 None:intergenic 55.0%
GACTTTATCACTGCCCTGGC+TGG - chr1_4:14993589-14993608 None:intergenic 55.0%
! GCCTTTGGTGTGGTGCAAGG+AGG + chr1_4:14993107-14993126 Msa0152380:CDS 60.0%
GCCTCCTTGCACCACACCAA+AGG - chr1_4:14993111-14993130 None:intergenic 60.0%
! GCCTTTGGTGTGGTGCAAGG+AGG + chr1_4:14993107-14993126 Msa0152380:CDS 60.0%
GCCTCCTTGCACCACACCAA+AGG - chr1_4:14993111-14993130 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 14992772 14993998 14992772 ID=Msa0152380;Name=Msa0152380
chr1_4 mRNA 14992772 14993998 14992772 ID=Msa0152380-mRNA-1;Parent=Msa0152380;Name=Msa0152380-mRNA-1;_AED=0.01;_eAED=0.01;_QI=178|1|1|1|1|1|2|290|172
chr1_4 exon 14992772 14993288 14992772 ID=Msa0152380-mRNA-1:exon:5914;Parent=Msa0152380-mRNA-1
chr1_4 exon 14993529 14993998 14993529 ID=Msa0152380-mRNA-1:exon:5915;Parent=Msa0152380-mRNA-1
chr1_4 five_prime_UTR 14992772 14992949 14992772 ID=Msa0152380-mRNA-1:five_prime_utr;Parent=Msa0152380-mRNA-1
chr1_4 CDS 14992950 14993288 14992950 ID=Msa0152380-mRNA-1:cds;Parent=Msa0152380-mRNA-1
chr1_4 CDS 14993529 14993708 14993529 ID=Msa0152380-mRNA-1:cds;Parent=Msa0152380-mRNA-1
chr1_4 three_prime_UTR 14993709 14993998 14993709 ID=Msa0152380-mRNA-1:three_prime_utr;Parent=Msa0152380-mRNA-1
Gene Sequence

>Msa0152380

ATGCATCCTACTACACTTCCCAAGGGTATGGCCAAATGGACAATGATGCCATGGCCTAGGCTACCTATACCATTATCAATTGACAACTTTCCAACTCACAATGTAAGCTTGTGTTTTGACTTGAAAGAATTAGATTTGAGCAACCAAAGAGGTATAAGCCTTTGGTGTGGTGCAAGGAGGCAAATTAGATACCAAGATGAGGATGAAGATAGAGATGATGAGTATGGACACAATGAGGAGATTTCAAAGTTGGAATTCTATAGTCAATCAGCAAGAGGAGAAGCACTCATTGTTCATGCACTTGTGGACCAAAATGAAGTAGAAGTACTTATCTTCAAGGGGTTTTCTTCATCCTTGAGCTATGGTACTTCCCCTGACCCAACAAGAAGCATTCTTCCAGCCAGGGCAGTGATAAAGTCTATAGATAGAATAAAAGGGCCTTTTGACCCTGCCAATATTGAGTATCTGCAGAAGGATGTTCCATGGGAAGAATTCAAGACAAATATTCTTTCTAGCTAA

Protein sequence

>Msa0152380

MHPTTLPKGMAKWTMMPWPRLPIPLSIDNFPTHNVSLCFDLKELDLSNQRGISLWCGARRQIRYQDEDEDRDDEYGHNEEISKLEFYSQSARGEALIVHALVDQNEVEVLIFKGFSSSLSYGTSPDPTRSILPARAVIKSIDRIKGPFDPANIEYLQKDVPWEEFKTNILSS*