AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1331900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331900 MtrunA17_Chr4g0063951 97.758 223 5 0 1 223 1 223 1.80e-158 437
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331900 AT4G02530.1 57.456 228 80 5 1 223 1 216 2.22e-76 229
Msa1331900 AT4G02530.2 57.456 228 80 5 1 223 51 266 4.33e-76 231
Msa1331900 AT4G02530.3 55.208 192 69 5 1 187 51 230 3.59e-56 179

Find 66 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCAGCTGGTTCTGTATT+AGG 0.115134 8_4:+51589200 Msa1331900:CDS
CAATTCTTCACTTGCTTCAT+TGG 0.228075 8_4:+51589765 Msa1331900:CDS
CAATGGCAATTTGGAACATT+TGG 0.246482 8_4:-51588295 None:intergenic
TGAAGACACAAAGGCAATTT+TGG 0.248885 8_4:-51590347 None:intergenic
CCCAAACTTTAGCCATTAAA+AGG 0.259676 8_4:+51590709 Msa1331900:three_prime_UTR
ATGCACATTACCTGTTTCTT+TGG 0.259731 8_4:-51588720 None:intergenic
GGGCTGGTTGGTAAACTTAA+AGG 0.260350 8_4:+51590403 Msa1331900:CDS
TGCCCCATGACACCAAAATT+TGG 0.279184 8_4:-51590511 None:intergenic
ACCTATAGATATGTCTCTTT+TGG 0.283384 8_4:-51588543 None:intergenic
CTTCAGCTGGTTCTGTATTA+GGG 0.290521 8_4:+51589201 Msa1331900:CDS
TGATGATGATGTTGAGCTTT+TGG 0.311994 8_4:+51588637 Msa1331900:CDS
ATTAGCCATGATCTTGAATA+TGG 0.312967 8_4:-51590752 None:intergenic
AAGACATGGCAATGGCAATT+TGG 0.316877 8_4:-51588304 None:intergenic
GAGCCAGAAAAGAAAATTAA+TGG 0.318122 8_4:-51590487 None:intergenic
CTTGCTTCATTGGTTTCATC+AGG 0.341279 8_4:+51589775 Msa1331900:CDS
TTTGGAACATTTGGAGGATA+AGG 0.353186 8_4:-51588286 None:intergenic
AGCTAATATAGCTTTGAATA+AGG 0.354961 8_4:+51589253 Msa1331900:CDS
GCCACCTCAGACTTCTCTTC+AGG 0.369279 8_4:-51589736 None:intergenic
TTGGAGGATAAGGTTGTTGT+TGG 0.383540 8_4:-51588276 None:intergenic
GGTCCTTTCATTGAGTGGTA+AGG 0.408816 8_4:+51588580 Msa1331900:CDS
GGCTGGTTGGTAAACTTAAA+GGG 0.418797 8_4:+51590404 Msa1331900:CDS
CACATTACCTGTTTCTTTGG+TGG 0.425838 8_4:-51588717 None:intergenic
TTTCCTAGATAAAGCTCTGC+TGG 0.432116 8_4:-51590537 None:intergenic
AGTTCCTCCACCAAAGAAAC+AGG 0.434147 8_4:+51588710 Msa1331900:CDS
GAGAAGTGGACCTCCTTGAC+AGG 0.434367 8_4:+51590382 Msa1331900:CDS
CGGATCATGAAGTTTGAGCT+TGG 0.435253 8_4:+51590581 Msa1331900:three_prime_UTR
GTCCTTTCATTGAGTGGTAA+GGG 0.444161 8_4:+51588581 Msa1331900:CDS
GATGAAGATGCTAGATGAAA+AGG 0.445046 8_4:-51588413 None:intergenic
GAAAGGCAAGGATGCTGATT+GGG 0.449036 8_4:+51589223 Msa1331900:CDS
ACTCAATGAAAGGACCAAAC+TGG 0.472731 8_4:-51588573 None:intergenic
TGGCAATTTGGAACATTTGG+AGG 0.481259 8_4:-51588292 None:intergenic
GGAAAGGCAAGGATGCTGAT+TGG 0.483283 8_4:+51589222 Msa1331900:CDS
CTCAGACTTCTCTTCAGGAC+TGG 0.493549 8_4:-51589731 None:intergenic
ACCAAAAGAGACATATCTAT+AGG 0.497938 8_4:+51588542 Msa1331900:CDS
GTGGACCTCCTTGACAGGGC+TGG 0.503664 8_4:+51590387 Msa1331900:CDS
GTCCCAGCAGAGCTTTATCT+AGG 0.513568 8_4:+51590534 Msa1331900:three_prime_UTR
TGCAGGGTATCTTCAAGACT+TGG 0.514050 8_4:+51589130 Msa1331900:intron
ATTACCTGTTTCTTTGGTGG+AGG 0.519264 8_4:-51588714 None:intergenic
TTGTTCACTCAAGCTACTGA+AGG 0.520057 8_4:+51590661 Msa1331900:three_prime_UTR
ACCTCCTTGACAGGGCTGGT+TGG 0.528931 8_4:+51590391 Msa1331900:CDS
CATGATCTTGAATATGGCTA+TGG 0.535127 8_4:-51590746 None:intergenic
AACCCTTACCACTCAATGAA+AGG 0.544169 8_4:-51588583 None:intergenic
ATGAAGATGCTAGATGAAAA+GGG 0.545433 8_4:-51588412 None:intergenic
AGTTTGGTCCTTTCATTGAG+TGG 0.547127 8_4:+51588575 Msa1331900:CDS
GGTTGATTAACTACTTTGCA+AGG 0.549195 8_4:-51588506 None:intergenic
CAGCCTCTGCAATTGAGAAG+TGG 0.553034 8_4:+51590368 Msa1331900:CDS
GCTGGTTCTGTATTAGGGAA+AGG 0.556120 8_4:+51589206 Msa1331900:CDS
ATTAAAAGGTGTCACGGCAG+AGG 0.558942 8_4:+51590723 Msa1331900:three_prime_UTR
GTGTACAAATTGAGTGAAGT+TGG 0.572552 8_4:+51589152 Msa1331900:CDS
TTTACCAACCAGCCCTGTCA+AGG 0.574580 8_4:-51590395 None:intergenic
ACAGGGTTGTAAGCATATGT+TGG 0.583037 8_4:-51588455 None:intergenic
TTCCTAGATAAAGCTCTGCT+GGG 0.593420 8_4:-51590536 None:intergenic
TTTAATGGCTAAAGTTTGGG+TGG 0.600097 8_4:-51590706 None:intergenic
GCATGAAAATTTAGAAGACA+TGG 0.609987 8_4:-51588318 None:intergenic
GGCAGTTGCTCAGAATGATG+TGG 0.619645 8_4:+51590318 Msa1331900:intron
TTAGCCATTAAAAGGTGTCA+CGG 0.625905 8_4:+51590717 Msa1331900:three_prime_UTR
TTCTGTATTAGGGAAAGGCA+AGG 0.632545 8_4:+51589211 Msa1331900:CDS
AGAAGTGGACCTCCTTGACA+GGG 0.632549 8_4:+51590383 Msa1331900:CDS
AAGAAGAGACTTGAGAAACA+AGG 0.638852 8_4:+51588680 Msa1331900:CDS
TGCAGAGGCTGAAGACACAA+AGG 0.649840 8_4:-51590356 None:intergenic
TCCTGAAGAGAAGTCTGAGG+TGG 0.653831 8_4:+51589735 Msa1331900:CDS
GGTCCACTTCTCAATTGCAG+AGG 0.653988 8_4:-51590371 None:intergenic
CAGTCCTGAAGAGAAGTCTG+AGG 0.662394 8_4:+51589732 Msa1331900:CDS
AAATTTAGAAGACATGGCAA+TGG 0.664050 8_4:-51588312 None:intergenic
ACCAACCAGCCCTGTCAAGG+AGG 0.690236 8_4:-51590392 None:intergenic
AGCAAGTGAAGAATTGAATG+TGG 0.714143 8_4:-51589758 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATTTATATGTATTATTA+TGG - chr8_4:51588803-51588822 None:intergenic 10.0%
!! TAATAATACATATAAATTTG+AGG + chr8_4:51588803-51588822 Msa1331900:intron 10.0%
!!! CTTTTGTTTTGTTTATTTTT+TGG - chr8_4:51588345-51588364 None:intergenic 15.0%
!!! GATATGAAATTTATTTTTCA+TGG + chr8_4:51588748-51588767 Msa1331900:intron 15.0%
!! ATTAAACTTATACAATATCT+AGG - chr8_4:51588917-51588936 None:intergenic 15.0%
!! GAGAAAGAAAAAAAAAAACA+TGG + chr8_4:51588364-51588383 Msa1331900:exon 20.0%
!! GAACAAAATCATTCAATTTA+AGG - chr8_4:51588779-51588798 None:intergenic 20.0%
!! ATTAAAGATTTCCTAACAAA+GGG - chr8_4:51589400-51589419 None:intergenic 20.0%
!! TATTAAAGATTTCCTAACAA+AGG - chr8_4:51589401-51589420 None:intergenic 20.0%
!! TTAATTTCTTTGCAGTAATA+TGG + chr8_4:51589466-51589485 Msa1331900:intron 20.0%
!! ATAAGAGAATTTATGTATCA+AGG - chr8_4:51589550-51589569 None:intergenic 20.0%
!! TTCTATAAATAAACAAGAGA+AGG - chr8_4:51589944-51589963 None:intergenic 20.0%
!! GTTGATATGTATAATTGATT+TGG - chr8_4:51590007-51590026 None:intergenic 20.0%
!!! AATGTGATTTTAAATACACT+TGG - chr8_4:51590032-51590051 None:intergenic 20.0%
!!! GTTTGGCTTTTATTTTAAAA+TGG - chr8_4:51590106-51590125 None:intergenic 20.0%
!!! ATTCCATTAATTTTCTTTTC+TGG + chr8_4:51590484-51590503 Msa1331900:three_prime_UTR 20.0%
!!! TATAGGTTTTATTACCAGTT+TGG + chr8_4:51588559-51588578 Msa1331900:CDS 25.0%
! TAATTTAGCACAATTCATGA+GGG + chr8_4:51588829-51588848 Msa1331900:intron 25.0%
! ATCAAACAATAACATGAACT+AGG - chr8_4:51588997-51589016 None:intergenic 25.0%
!!! GTTTTGAGTTTTTTCATGAA+AGG - chr8_4:51589026-51589045 None:intergenic 25.0%
! TCATTCGTTAGTACAAAAAA+GGG - chr8_4:51589102-51589121 None:intergenic 25.0%
! TTCATTCGTTAGTACAAAAA+AGG - chr8_4:51589103-51589122 None:intergenic 25.0%
! AACGAATGAAAAATAATTGC+AGG + chr8_4:51589113-51589132 Msa1331900:intron 25.0%
! ACGAATGAAAAATAATTGCA+GGG + chr8_4:51589114-51589133 Msa1331900:intron 25.0%
!!! AGCTAATATAGCTTTGAATA+AGG + chr8_4:51589253-51589272 Msa1331900:CDS 25.0%
! TTAAAGATTTCCTAACAAAG+GGG - chr8_4:51589399-51589418 None:intergenic 25.0%
! ACTGCAAAGAAATTAATAAC+AGG - chr8_4:51589462-51589481 None:intergenic 25.0%
! TCTTAGTCAATAGCAATAAT+TGG + chr8_4:51589511-51589530 Msa1331900:intron 25.0%
! AATTTCAAAATTGAGGAAAC+TGG + chr8_4:51589584-51589603 Msa1331900:intron 25.0%
!!! AGACTATTTTTTAGTGTGTT+TGG - chr8_4:51590123-51590142 None:intergenic 25.0%
!! ACTCTTAATATTGATGCTTT+TGG + chr8_4:51590297-51590316 Msa1331900:intron 25.0%
AAATTTAGAAGACATGGCAA+TGG - chr8_4:51588315-51588334 None:intergenic 30.0%
GCATGAAAATTTAGAAGACA+TGG - chr8_4:51588321-51588340 None:intergenic 30.0%
ATGAAGATGCTAGATGAAAA+GGG - chr8_4:51588415-51588434 None:intergenic 30.0%
! TTTTCACATTGCATTTGACA+GGG - chr8_4:51588475-51588494 None:intergenic 30.0%
ACCAAAAGAGACATATCTAT+AGG + chr8_4:51588542-51588561 Msa1331900:CDS 30.0%
! ACCTATAGATATGTCTCTTT+TGG - chr8_4:51588546-51588565 None:intergenic 30.0%
CTAATTTAGCACAATTCATG+AGG + chr8_4:51588828-51588847 Msa1331900:intron 30.0%
CTCTCATAAAGTGCAAATAT+TGG + chr8_4:51588872-51588891 Msa1331900:intron 30.0%
AAAAATGATCTAACTTCAGC+TGG + chr8_4:51589188-51589207 Msa1331900:CDS 30.0%
TCCAAACATACACAATGAAA+CGG - chr8_4:51589285-51589304 None:intergenic 30.0%
TTCACAGTGAATGCATTTAA+GGG - chr8_4:51589376-51589395 None:intergenic 30.0%
GAGTCTGAATTTCAAAATTG+AGG + chr8_4:51589577-51589596 Msa1331900:intron 30.0%
CCACTTGAAAATGATACTAA+AGG - chr8_4:51589612-51589631 None:intergenic 30.0%
!! CCTTTAGTATCATTTTCAAG+TGG + chr8_4:51589609-51589628 Msa1331900:intron 30.0%
CACACTCTTTAATCTCTATT+TGG + chr8_4:51589686-51589705 Msa1331900:intron 30.0%
TAACCATCTAAATCAAGAGA+AGG - chr8_4:51589881-51589900 None:intergenic 30.0%
GTTATGACCTGGAAAATTAA+GGG + chr8_4:51589897-51589916 Msa1331900:intron 30.0%
! GGTGTTTGGATTTCAATTTT+AGG + chr8_4:51589918-51589937 Msa1331900:intron 30.0%
GCATTTGCCAACAAAATTAT+AGG + chr8_4:51590206-51590225 Msa1331900:intron 30.0%
! AATCTCAGAGCTATATTTTG+AGG - chr8_4:51590258-51590277 None:intergenic 30.0%
GAGCCAGAAAAGAAAATTAA+TGG - chr8_4:51590490-51590509 None:intergenic 30.0%
! GCATGTAGTCAAATTTTCAA+TGG - chr8_4:51590634-51590653 None:intergenic 30.0%
! CCTTTTAATGGCTAAAGTTT+GGG - chr8_4:51590712-51590731 None:intergenic 30.0%
! ACCTTTTAATGGCTAAAGTT+TGG - chr8_4:51590713-51590732 None:intergenic 30.0%
! TTTGGAACATTTGGAGGATA+AGG - chr8_4:51588289-51588308 None:intergenic 35.0%
! CAATGGCAATTTGGAACATT+TGG - chr8_4:51588298-51588317 None:intergenic 35.0%
GATGAAGATGCTAGATGAAA+AGG - chr8_4:51588416-51588435 None:intergenic 35.0%
! CTTTTCACATTGCATTTGAC+AGG - chr8_4:51588476-51588495 None:intergenic 35.0%
GGTTGATTAACTACTTTGCA+AGG - chr8_4:51588509-51588528 None:intergenic 35.0%
!! TGATGATGATGTTGAGCTTT+TGG + chr8_4:51588637-51588656 Msa1331900:CDS 35.0%
AAGAAGAGACTTGAGAAACA+AGG + chr8_4:51588680-51588699 Msa1331900:CDS 35.0%
! ATGCACATTACCTGTTTCTT+TGG - chr8_4:51588723-51588742 None:intergenic 35.0%
TGAAAACTCAGCAAACAAAC+TGG - chr8_4:51589050-51589069 None:intergenic 35.0%
GTGTACAAATTGAGTGAAGT+TGG + chr8_4:51589152-51589171 Msa1331900:CDS 35.0%
CCAAACATACACAATGAAAC+GGG - chr8_4:51589284-51589303 None:intergenic 35.0%
CAGTGAGTTTGAAGAAATCA+CGG + chr8_4:51589309-51589328 Msa1331900:intron 35.0%
GTTCACAGTGAATGCATTTA+AGG - chr8_4:51589377-51589396 None:intergenic 35.0%
TTTCAACGACGATAGTATCT+CGG - chr8_4:51589659-51589678 None:intergenic 35.0%
AGCAAGTGAAGAATTGAATG+TGG - chr8_4:51589761-51589780 None:intergenic 35.0%
CAATTCTTCACTTGCTTCAT+TGG + chr8_4:51589765-51589784 Msa1331900:CDS 35.0%
CAGGTGTGTTTCATTCAATT+AGG + chr8_4:51589794-51589813 Msa1331900:intron 35.0%
CAGACATCTTATTCGATGTT+AGG + chr8_4:51589855-51589874 Msa1331900:intron 35.0%
TGATTTAGATGGTTATGACC+TGG + chr8_4:51589886-51589905 Msa1331900:intron 35.0%
GGTTATGACCTGGAAAATTA+AGG + chr8_4:51589896-51589915 Msa1331900:intron 35.0%
CTGAGGATAATCTATTAGCA+AGG - chr8_4:51590154-51590173 None:intergenic 35.0%
TGCCAACAAAATTATAGGCT+AGG + chr8_4:51590211-51590230 Msa1331900:intron 35.0%
GCCAACAAAATTATAGGCTA+GGG + chr8_4:51590212-51590231 Msa1331900:intron 35.0%
! TCCCTAGCCTATAATTTTGT+TGG - chr8_4:51590216-51590235 None:intergenic 35.0%
! TGAAGACACAAAGGCAATTT+TGG - chr8_4:51590350-51590369 None:intergenic 35.0%
!!! TTTTCTGGCTCACCAAATTT+TGG + chr8_4:51590499-51590518 Msa1331900:three_prime_UTR 35.0%
!!! TCACCAAATTTTGGTGTCAT+GGG + chr8_4:51590508-51590527 Msa1331900:three_prime_UTR 35.0%
!! ACCAACAAGCTCATTTTTCA+CGG + chr8_4:51590561-51590580 Msa1331900:three_prime_UTR 35.0%
TTTAATGGCTAAAGTTTGGG+TGG - chr8_4:51590709-51590728 None:intergenic 35.0%
CCCAAACTTTAGCCATTAAA+AGG + chr8_4:51590709-51590728 Msa1331900:three_prime_UTR 35.0%
!! TTAGCCATTAAAAGGTGTCA+CGG + chr8_4:51590717-51590736 Msa1331900:three_prime_UTR 35.0%
TTGGAGGATAAGGTTGTTGT+TGG - chr8_4:51588279-51588298 None:intergenic 40.0%
! TGGCAATTTGGAACATTTGG+AGG - chr8_4:51588295-51588314 None:intergenic 40.0%
AAGACATGGCAATGGCAATT+TGG - chr8_4:51588307-51588326 None:intergenic 40.0%
ACAGGGTTGTAAGCATATGT+TGG - chr8_4:51588458-51588477 None:intergenic 40.0%
! CTTTTGGTCACACTTAGTGA+TGG - chr8_4:51588530-51588549 None:intergenic 40.0%
ACTCAATGAAAGGACCAAAC+TGG - chr8_4:51588576-51588595 None:intergenic 40.0%
AGTTTGGTCCTTTCATTGAG+TGG + chr8_4:51588575-51588594 Msa1331900:CDS 40.0%
GTCCTTTCATTGAGTGGTAA+GGG + chr8_4:51588581-51588600 Msa1331900:CDS 40.0%
AACCCTTACCACTCAATGAA+AGG - chr8_4:51588586-51588605 None:intergenic 40.0%
! ATTACCTGTTTCTTTGGTGG+AGG - chr8_4:51588717-51588736 None:intergenic 40.0%
! CACATTACCTGTTTCTTTGG+TGG - chr8_4:51588720-51588739 None:intergenic 40.0%
!!! CTGAGTTTTCAAGTTCAGCA+GGG + chr8_4:51589059-51589078 Msa1331900:intron 40.0%
!! ACTTCAGCTGGTTCTGTATT+AGG + chr8_4:51589200-51589219 Msa1331900:CDS 40.0%
!! CTTCAGCTGGTTCTGTATTA+GGG + chr8_4:51589201-51589220 Msa1331900:CDS 40.0%
TTCTGTATTAGGGAAAGGCA+AGG + chr8_4:51589211-51589230 Msa1331900:CDS 40.0%
CCCGTTTCATTGTGTATGTT+TGG + chr8_4:51589281-51589300 Msa1331900:intron 40.0%
TTCAACGACGATAGTATCTC+GGG - chr8_4:51589658-51589677 None:intergenic 40.0%
GATACTATCGTCGTTGAAAC+TGG + chr8_4:51589660-51589679 Msa1331900:intron 40.0%
!! CTTGCTTCATTGGTTTCATC+AGG + chr8_4:51589775-51589794 Msa1331900:CDS 40.0%
AGGCCTTCTCTTGATTTAGA+TGG + chr8_4:51589875-51589894 Msa1331900:intron 40.0%
! CCAAACACCCTTAATTTTCC+AGG - chr8_4:51589907-51589926 None:intergenic 40.0%
!! CCTGGAAAATTAAGGGTGTT+TGG + chr8_4:51589904-51589923 Msa1331900:intron 40.0%
TGCGCTTAAGAAAGTTTCTG+AGG - chr8_4:51590171-51590190 None:intergenic 40.0%
!! GGCTGGTTGGTAAACTTAAA+GGG + chr8_4:51590404-51590423 Msa1331900:CDS 40.0%
!!! CTCACCAAATTTTGGTGTCA+TGG + chr8_4:51590507-51590526 Msa1331900:three_prime_UTR 40.0%
!!! CACCAAATTTTGGTGTCATG+GGG + chr8_4:51590509-51590528 Msa1331900:three_prime_UTR 40.0%
TTCCTAGATAAAGCTCTGCT+GGG - chr8_4:51590539-51590558 None:intergenic 40.0%
TTTCCTAGATAAAGCTCTGC+TGG - chr8_4:51590540-51590559 None:intergenic 40.0%
TCCGTGAAAAATGAGCTTGT+TGG - chr8_4:51590565-51590584 None:intergenic 40.0%
TTGTTCACTCAAGCTACTGA+AGG + chr8_4:51590661-51590680 Msa1331900:three_prime_UTR 40.0%
GGTCCTTTCATTGAGTGGTA+AGG + chr8_4:51588580-51588599 Msa1331900:CDS 45.0%
AGTTCCTCCACCAAAGAAAC+AGG + chr8_4:51588710-51588729 Msa1331900:CDS 45.0%
!!! GCTGAGTTTTCAAGTTCAGC+AGG + chr8_4:51589058-51589077 Msa1331900:intron 45.0%
! TGCAGGGTATCTTCAAGACT+TGG + chr8_4:51589130-51589149 Msa1331900:intron 45.0%
!! GCTGGTTCTGTATTAGGGAA+AGG + chr8_4:51589206-51589225 Msa1331900:CDS 45.0%
! GAAAGGCAAGGATGCTGATT+GGG + chr8_4:51589223-51589242 Msa1331900:CDS 45.0%
AAGAAATCACGGTGACACTG+TGG + chr8_4:51589320-51589339 Msa1331900:intron 45.0%
TCACTGTGAACCCCTTTGTT+AGG + chr8_4:51589386-51589405 Msa1331900:intron 45.0%
! AGTATCTCGGGCATGAGTTT+TGG - chr8_4:51589646-51589665 None:intergenic 45.0%
!! GGGCTGGTTGGTAAACTTAA+AGG + chr8_4:51590403-51590422 Msa1331900:CDS 45.0%
TGCCCCATGACACCAAAATT+TGG - chr8_4:51590514-51590533 None:intergenic 45.0%
CGGATCATGAAGTTTGAGCT+TGG + chr8_4:51590581-51590600 Msa1331900:three_prime_UTR 45.0%
! TCTGCCGTGACACCTTTTAA+TGG - chr8_4:51590724-51590743 None:intergenic 45.0%
!! ATTAAAAGGTGTCACGGCAG+AGG + chr8_4:51590723-51590742 Msa1331900:three_prime_UTR 45.0%
GGAAAGGCAAGGATGCTGAT+TGG + chr8_4:51589222-51589241 Msa1331900:CDS 50.0%
CTCAGACTTCTCTTCAGGAC+TGG - chr8_4:51589734-51589753 None:intergenic 50.0%
CAGTCCTGAAGAGAAGTCTG+AGG + chr8_4:51589732-51589751 Msa1331900:CDS 50.0%
TCCTGAAGAGAAGTCTGAGG+TGG + chr8_4:51589735-51589754 Msa1331900:CDS 50.0%
GGCAGTTGCTCAGAATGATG+TGG + chr8_4:51590318-51590337 Msa1331900:intron 50.0%
TGCAGAGGCTGAAGACACAA+AGG - chr8_4:51590359-51590378 None:intergenic 50.0%
CAGCCTCTGCAATTGAGAAG+TGG + chr8_4:51590368-51590387 Msa1331900:CDS 50.0%
GGTCCACTTCTCAATTGCAG+AGG - chr8_4:51590374-51590393 None:intergenic 50.0%
AGAAGTGGACCTCCTTGACA+GGG + chr8_4:51590383-51590402 Msa1331900:CDS 50.0%
TTTACCAACCAGCCCTGTCA+AGG - chr8_4:51590398-51590417 None:intergenic 50.0%
! GTCCCAGCAGAGCTTTATCT+AGG + chr8_4:51590534-51590553 Msa1331900:three_prime_UTR 50.0%
GCCACCTCAGACTTCTCTTC+AGG - chr8_4:51589739-51589758 None:intergenic 55.0%
GAGAAGTGGACCTCCTTGAC+AGG + chr8_4:51590382-51590401 Msa1331900:CDS 55.0%
! ACCTCCTTGACAGGGCTGGT+TGG + chr8_4:51590391-51590410 Msa1331900:CDS 60.0%
ACCAACCAGCCCTGTCAAGG+AGG - chr8_4:51590395-51590414 None:intergenic 60.0%
GTGGACCTCCTTGACAGGGC+TGG + chr8_4:51590387-51590406 Msa1331900:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 51588255 51590762 51588255 ID=Msa1331900;Name=Msa1331900
chr8_4 mRNA 51588255 51590762 51588255 ID=Msa1331900-mRNA-1;Parent=Msa1331900;Name=Msa1331900-mRNA-1;_AED=0.01;_eAED=0.01;_QI=128|1|1|1|1|1|4|330|223
chr8_4 exon 51588255 51588731 51588255 ID=Msa1331900-mRNA-1:exon:15281;Parent=Msa1331900-mRNA-1
chr8_4 exon 51589135 51589274 51589135 ID=Msa1331900-mRNA-1:exon:15282;Parent=Msa1331900-mRNA-1
chr8_4 exon 51589724 51589796 51589724 ID=Msa1331900-mRNA-1:exon:15283;Parent=Msa1331900-mRNA-1
chr8_4 exon 51590323 51590762 51590323 ID=Msa1331900-mRNA-1:exon:15284;Parent=Msa1331900-mRNA-1
chr8_4 five_prime_UTR 51588255 51588382 51588255 ID=Msa1331900-mRNA-1:five_prime_utr;Parent=Msa1331900-mRNA-1
chr8_4 CDS 51588383 51588731 51588383 ID=Msa1331900-mRNA-1:cds;Parent=Msa1331900-mRNA-1
chr8_4 CDS 51589135 51589274 51589135 ID=Msa1331900-mRNA-1:cds;Parent=Msa1331900-mRNA-1
chr8_4 CDS 51589724 51589796 51589724 ID=Msa1331900-mRNA-1:cds;Parent=Msa1331900-mRNA-1
chr8_4 CDS 51590323 51590432 51590323 ID=Msa1331900-mRNA-1:cds;Parent=Msa1331900-mRNA-1
chr8_4 three_prime_UTR 51590433 51590762 51590433 ID=Msa1331900-mRNA-1:three_prime_utr;Parent=Msa1331900-mRNA-1
Gene Sequence

>Msa1331900

ATGGCATCAAATTTTCTCTCAACAGCAAACCCTTTTCATCTAGCATCTTCATCACAATCTTCATTAGTAACACCAACATATGCTTACAACCCTGTCAAATGCAATGTGAAAAGACAATTAACTCCTTGCAAAGTAGTTAATCAACCATCACTAAGTGTGACCAAAAGAGACATATCTATAGGTTTTATTACCAGTTTGGTCCTTTCATTGAGTGGTAAGGGTTTGTTTGATGCTAATGCTGCAATACTTGAAGCTGATGATGATGTTGAGCTTTTGGAAAAAGTAAAGAAAGATAGAAAGAAGAGACTTGAGAAACAAGGTGTCATTAGTTCCTCCACCAAAGAAACAGGGTATCTTCAAGACTTGGTGTACAAATTGAGTGAAGTTGGTCAAGCAATTGAAAAAAATGATCTAACTTCAGCTGGTTCTGTATTAGGGAAAGGCAAGGATGCTGATTGGGTGCAAAAAGCTAATATAGCTTTGAATAAGCTCAGCTCCAGTCCTGAAGAGAAGTCTGAGGTGGCCACATTCAATTCTTCACTTGCTTCATTGGTTTCATCAGTTGCTCAGAATGATGTGGAGTCGTCCAAAATTGCCTTTGTGTCTTCAGCCTCTGCAATTGAGAAGTGGACCTCCTTGACAGGGCTGGTTGGTAAACTTAAAGGGATTTGA

Protein sequence

>Msa1331900

MASNFLSTANPFHLASSSQSSLVTPTYAYNPVKCNVKRQLTPCKVVNQPSLSVTKRDISIGFITSLVLSLSGKGLFDANAAILEADDDVELLEKVKKDRKKRLEKQGVISSSTKETGYLQDLVYKLSEVGQAIEKNDLTSAGSVLGKGKDADWVQKANIALNKLSSSPEEKSEVATFNSSLASLVSSVAQNDVESSKIAFVSSASAIEKWTSLTGLVGKLKGI*