AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1300880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300880 MtrunA17_Chr4g0063951 98.206 223 4 0 16 238 1 223 1.03e-159 441
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300880 AT4G02530.1 57.456 228 80 5 16 238 1 216 2.00e-76 230
Msa1300880 AT4G02530.2 57.456 228 80 5 16 238 51 266 3.39e-76 231
Msa1300880 AT4G02530.3 55.208 192 69 5 16 202 51 230 3.04e-56 180

Find 66 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCAGCTGGTTCTGTATT+AGG 0.115134 8_3:-62632279 Msa1300880:CDS
AAGACATGGCAATGGGAATT+TGG 0.224046 8_3:+62633169 None:intergenic
CAATTCTTCACTTGCTTCAT+TGG 0.228075 8_3:-62631714 Msa1300880:CDS
CAATGGGAATTTGGAACATT+TGG 0.234152 8_3:+62633178 None:intergenic
CCAAAACTTTAGCCATTAAA+AGG 0.239545 8_3:-62630768 Msa1300880:three_prime_UTR
TGAAGACACAAAGGCAATTT+TGG 0.248885 8_3:+62631131 None:intergenic
ATGCACATTACCTGTTTCTT+TGG 0.259731 8_3:+62632754 None:intergenic
GGGCTGGTTGGTAAACTTAA+AGG 0.260350 8_3:-62631075 Msa1300880:CDS
TGCCCCATGACACCAAAATT+TGG 0.279184 8_3:+62630967 None:intergenic
ACCTATAGATATGTCTCTTT+TGG 0.283384 8_3:+62632931 None:intergenic
CTTCAGCTGGTTCTGTATTA+GGG 0.290521 8_3:-62632278 Msa1300880:CDS
ATTAGCCATGATCTTGAATA+TGG 0.312967 8_3:+62630725 Msa1300870:three_prime_UTR
AGATGATGATGTTGAGCTTT+TGG 0.314477 8_3:-62632837 Msa1300880:CDS
GAGCCAGAAAAGAAAATTAA+TGG 0.318122 8_3:+62630991 None:intergenic
CTTGCTTCATTGGTTTCATC+AGG 0.341279 8_3:-62631704 Msa1300880:intron
TTTGGAACATTTGGAGGATA+AGG 0.343315 8_3:+62633187 None:intergenic
AGCTAATATAGCTTTGAATA+AGG 0.354961 8_3:-62632226 Msa1300880:intron
TCCACCTCAGACTTCTCTTC+AGG 0.369279 8_3:+62631743 None:intergenic
TTGGAGGATAAGGTTGTTGT+TGG 0.383540 8_3:+62633197 None:intergenic
GGTCCTTTCATTGAGTGGTA+AGG 0.408816 8_3:-62632894 Msa1300880:CDS
GGCTGGTTGGTAAACTTAAA+GGG 0.418797 8_3:-62631074 Msa1300880:CDS
CACATTACCTGTTTCTTTGG+TGG 0.425838 8_3:+62632757 None:intergenic
TTTCCTAGATAAAGCTCTGC+TGG 0.432116 8_3:+62630941 None:intergenic
AGTTCCTCCACCAAAGAAAC+AGG 0.434147 8_3:-62632764 Msa1300880:intron
GAGAAGTGGACCTCCTTGAC+AGG 0.434367 8_3:-62631096 Msa1300880:CDS
CGGATCATGAAGTTTGAGCT+TGG 0.435253 8_3:-62630897 Msa1300880:three_prime_UTR
GTCCTTTCATTGAGTGGTAA+GGG 0.444161 8_3:-62632893 Msa1300880:CDS
GATGAAGATGCTAGATGAAA+AGG 0.445046 8_3:+62633061 None:intergenic
TGGGAATTTGGAACATTTGG+AGG 0.445839 8_3:+62633181 None:intergenic
GAAAGGCAAGGATGCTGATT+GGG 0.449036 8_3:-62632256 Msa1300880:CDS
GATAAGGTTGTTGTTGGATT+CGG 0.453369 8_3:+62633203 None:intergenic
ACTCAATGAAAGGACCAAAC+TGG 0.472731 8_3:+62632901 None:intergenic
GGAAAGGCAAGGATGCTGAT+TGG 0.483283 8_3:-62632257 Msa1300880:CDS
CTCAGACTTCTCTTCAGGAC+TGG 0.493549 8_3:+62631748 None:intergenic
ACCAAAAGAGACATATCTAT+AGG 0.497938 8_3:-62632932 Msa1300880:CDS
GTGGACCTCCTTGACAGGGC+TGG 0.503664 8_3:-62631091 Msa1300880:CDS
GTCCCAGCAGAGCTTTATCT+AGG 0.513568 8_3:-62630944 Msa1300880:three_prime_UTR
TGCAGGGTATCTTCAAGACT+TGG 0.514050 8_3:-62632349 Msa1300880:intron
ATTACCTGTTTCTTTGGTGG+AGG 0.519264 8_3:+62632760 None:intergenic
TTGTTCACTCAAGCTACTGA+AGG 0.520057 8_3:-62630817 Msa1300880:three_prime_UTR
AATTTAGAAGACATGGCAAT+GGG 0.524440 8_3:+62633162 None:intergenic
ACCTCCTTGACAGGGCTGGT+TGG 0.528931 8_3:-62631087 Msa1300880:CDS
CATGATCTTGAATATGGCTA+TGG 0.535127 8_3:+62630731 None:intergenic
AACCCTTACCACTCAATGAA+AGG 0.544169 8_3:+62632891 None:intergenic
ATGAAGATGCTAGATGAAAA+GGG 0.545433 8_3:+62633062 None:intergenic
AGTTTGGTCCTTTCATTGAG+TGG 0.547127 8_3:-62632899 Msa1300880:CDS
GGTTGATTAACTACTTTGCA+AGG 0.549195 8_3:+62632968 None:intergenic
CAGCCTCTGCAATTGAGAAG+TGG 0.553034 8_3:-62631110 Msa1300880:CDS
GCTGGTTCTGTATTAGGGAA+AGG 0.556120 8_3:-62632273 Msa1300880:CDS
ATTAAAAGGTGTCACGGCAG+AGG 0.558942 8_3:-62630754 Msa1300880:three_prime_UTR
GTGTACAAATTGAGTGAAGT+TGG 0.572552 8_3:-62632327 Msa1300880:CDS
TTTACCAACCAGCCCTGTCA+AGG 0.574580 8_3:+62631083 None:intergenic
ACAGGGTTGTAAGCATATGT+TGG 0.583037 8_3:+62633019 None:intergenic
TTCCTAGATAAAGCTCTGCT+GGG 0.593420 8_3:+62630942 None:intergenic
GCATGAAAATTTAGAAGACA+TGG 0.609987 8_3:+62633155 None:intergenic
GGCAGTTGCTCAGAATGATG+TGG 0.619645 8_3:-62631160 Msa1300880:intron
TCCTGAAGAGAAGTCTGAGG+TGG 0.622057 8_3:-62631744 Msa1300880:CDS
AAATTTAGAAGACATGGCAA+TGG 0.622823 8_3:+62633161 None:intergenic
TTAGCCATTAAAAGGTGTCA+CGG 0.625905 8_3:-62630760 Msa1300880:three_prime_UTR
TTCTGTATTAGGGAAAGGCA+AGG 0.632545 8_3:-62632268 Msa1300880:CDS
AGAAGTGGACCTCCTTGACA+GGG 0.632549 8_3:-62631095 Msa1300880:CDS
AAGAAGAGACTTGAGAAACA+AGG 0.638852 8_3:-62632794 Msa1300880:CDS
TGCAGAGGCTGAAGACACAA+AGG 0.649840 8_3:+62631122 None:intergenic
GGTCCACTTCTCAATTGCAG+AGG 0.653988 8_3:+62631107 None:intergenic
CAGTCCTGAAGAGAAGTCTG+AGG 0.662394 8_3:-62631747 Msa1300880:CDS
ACCAACCAGCCCTGTCAAGG+AGG 0.690236 8_3:+62631086 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATTTATATGTATTATTA+TGG + chr8_3:62631284-62631303 None:intergenic 10.0%
!! TAATAATACATATAAATTTG+AGG - chr8_3:62631284-62631303 Msa1300880:intron 10.0%
!! ATTAAACTTATACAATATTT+AGG + chr8_3:62631398-62631417 None:intergenic 10.0%
!!! CTTTTGTTTTGTTTATTTTT+TGG + chr8_3:62630827-62630846 None:intergenic 15.0%
!!! GATATGAAATTTATTTTTCA+TGG - chr8_3:62631229-62631248 Msa1300880:intron 15.0%
!! AGAGAAAGAAAAAAAAAACA+TGG - chr8_3:62630845-62630864 Msa1300880:three_prime_UTR 20.0%
!! GAACAAAATCATTCAATTTA+AGG + chr8_3:62631260-62631279 None:intergenic 20.0%
!! ATTAAAGATTTCCTAACAAA+GGG + chr8_3:62631876-62631895 None:intergenic 20.0%
!! TATTAAAGATTTCCTAACAA+AGG + chr8_3:62631877-62631896 None:intergenic 20.0%
!! TTAATTTCTTTGCAGTAATA+TGG - chr8_3:62631942-62631961 Msa1300880:intron 20.0%
!! ATAAGAGAATTTATGTATCA+AGG + chr8_3:62632026-62632045 None:intergenic 20.0%
!! TTCTATAAATAAACAAGAGA+AGG + chr8_3:62632420-62632439 None:intergenic 20.0%
!! GTTGATATGTATAATTGATT+TGG + chr8_3:62632484-62632503 None:intergenic 20.0%
!!! AATGTGATTTTAAATACACT+TGG + chr8_3:62632509-62632528 None:intergenic 20.0%
!!! GTTTGGCTTTTATTTTAAAA+TGG + chr8_3:62632583-62632602 None:intergenic 20.0%
!!! ATTCCATTAATTTTCTTTTC+TGG - chr8_3:62632961-62632980 Msa1300880:CDS 20.0%
!!! TATAGGTTTTATTACCAGTT+TGG - chr8_3:62631040-62631059 Msa1300880:three_prime_UTR 25.0%
! TAATTTAGCACAATTCATGA+GGG - chr8_3:62631310-62631329 Msa1300880:intron 25.0%
! ATCAAACAATAACATGAACT+AGG + chr8_3:62631478-62631497 None:intergenic 25.0%
!!! GTTTTGAGTTTTTTCATGAA+AGG + chr8_3:62631507-62631526 None:intergenic 25.0%
! TCATTCGTTAGTACAAAAAA+GGG + chr8_3:62631578-62631597 None:intergenic 25.0%
! TTCATTCGTTAGTACAAAAA+AGG + chr8_3:62631579-62631598 None:intergenic 25.0%
! AACGAATGAAAAATAATTGC+AGG - chr8_3:62631589-62631608 Msa1300880:intron 25.0%
! ACGAATGAAAAATAATTGCA+GGG - chr8_3:62631590-62631609 Msa1300880:intron 25.0%
!!! AGCTAATATAGCTTTGAATA+AGG - chr8_3:62631729-62631748 Msa1300880:CDS 25.0%
! TTAAAGATTTCCTAACAAAG+GGG + chr8_3:62631875-62631894 None:intergenic 25.0%
! ACTGCAAAGAAATTAATAAC+AGG + chr8_3:62631938-62631957 None:intergenic 25.0%
! TCTTAGTCAATAGCAATAAT+TGG - chr8_3:62631987-62632006 Msa1300880:intron 25.0%
! AATTTCAAAATTGAGGAAAC+TGG - chr8_3:62632060-62632079 Msa1300880:intron 25.0%
!!! AGACTATTTTTTAGTGTGTT+TGG + chr8_3:62632600-62632619 None:intergenic 25.0%
!! ACTCTTAATATTGATGCTTT+TGG - chr8_3:62632774-62632793 Msa1300880:CDS 25.0%
!! CTTTTAATGGCTAAAGTTTT+GGG + chr8_3:62633189-62633208 None:intergenic 25.0%
AATTTAGAAGACATGGCAAT+GGG + chr8_3:62630796-62630815 None:intergenic 30.0%
AAATTTAGAAGACATGGCAA+TGG + chr8_3:62630797-62630816 None:intergenic 30.0%
GCATGAAAATTTAGAAGACA+TGG + chr8_3:62630803-62630822 None:intergenic 30.0%
ATGAAGATGCTAGATGAAAA+GGG + chr8_3:62630896-62630915 None:intergenic 30.0%
! TTTTCACATTGCATTTGACA+GGG + chr8_3:62630956-62630975 None:intergenic 30.0%
ACCAAAAGAGACATATCTAT+AGG - chr8_3:62631023-62631042 Msa1300880:three_prime_UTR 30.0%
! ACCTATAGATATGTCTCTTT+TGG + chr8_3:62631027-62631046 None:intergenic 30.0%
CTAATTTAGCACAATTCATG+AGG - chr8_3:62631309-62631328 Msa1300880:intron 30.0%
CTCTCATAAAGTGCAAATAT+TGG - chr8_3:62631353-62631372 Msa1300880:intron 30.0%
AAAAATGATCTAACTTCAGC+TGG - chr8_3:62631664-62631683 Msa1300880:intron 30.0%
TCCAAACATACACAATGAAA+CGG + chr8_3:62631761-62631780 None:intergenic 30.0%
TTCACAGTGAATGCATTTAA+GGG + chr8_3:62631852-62631871 None:intergenic 30.0%
GAGTCTGAATTTCAAAATTG+AGG - chr8_3:62632053-62632072 Msa1300880:intron 30.0%
CCACTTGAAAATGATACTAA+AGG + chr8_3:62632088-62632107 None:intergenic 30.0%
!! CCTTTAGTATCATTTTCAAG+TGG - chr8_3:62632085-62632104 Msa1300880:intron 30.0%
CACACTCTTTAATCTCTATT+TGG - chr8_3:62632162-62632181 Msa1300880:intron 30.0%
TAACCATCTAAATCAAGAGA+AGG + chr8_3:62632357-62632376 None:intergenic 30.0%
GTTATGACCTGGAAAATTAA+GGG - chr8_3:62632373-62632392 Msa1300880:intron 30.0%
! GGTGTTTGGATTTCAATTTT+AGG - chr8_3:62632394-62632413 Msa1300880:intron 30.0%
GCATTTGCCAACAAAATTAT+AGG - chr8_3:62632683-62632702 Msa1300880:intron 30.0%
! AATCTCAGAGCTATATTTTG+AGG + chr8_3:62632735-62632754 None:intergenic 30.0%
GAGCCAGAAAAGAAAATTAA+TGG + chr8_3:62632967-62632986 None:intergenic 30.0%
! GCATGTAGTCAAATTTTCAA+TGG + chr8_3:62633111-62633130 None:intergenic 30.0%
! CCTTTTAATGGCTAAAGTTT+TGG + chr8_3:62633190-62633209 None:intergenic 30.0%
CCAAAACTTTAGCCATTAAA+AGG - chr8_3:62633187-62633206 Msa1300880:five_prime_UTR 30.0%
! GATAAGGTTGTTGTTGGATT+CGG + chr8_3:62630755-62630774 None:intergenic 35.0%
! TTTGGAACATTTGGAGGATA+AGG + chr8_3:62630771-62630790 None:intergenic 35.0%
! CAATGGGAATTTGGAACATT+TGG + chr8_3:62630780-62630799 None:intergenic 35.0%
GATGAAGATGCTAGATGAAA+AGG + chr8_3:62630897-62630916 None:intergenic 35.0%
! CTTTTCACATTGCATTTGAC+AGG + chr8_3:62630957-62630976 None:intergenic 35.0%
GGTTGATTAACTACTTTGCA+AGG + chr8_3:62630990-62631009 None:intergenic 35.0%
!! AGATGATGATGTTGAGCTTT+TGG - chr8_3:62631118-62631137 Msa1300880:CDS 35.0%
AAGAAGAGACTTGAGAAACA+AGG - chr8_3:62631161-62631180 Msa1300880:intron 35.0%
! ATGCACATTACCTGTTTCTT+TGG + chr8_3:62631204-62631223 None:intergenic 35.0%
TGAAAACTCAGCAAACAAAC+TGG + chr8_3:62631531-62631550 None:intergenic 35.0%
GTGTACAAATTGAGTGAAGT+TGG - chr8_3:62631628-62631647 Msa1300880:intron 35.0%
CCAAACATACACAATGAAAC+GGG + chr8_3:62631760-62631779 None:intergenic 35.0%
CAGTGAGTTTGAAGAAATCA+CGG - chr8_3:62631785-62631804 Msa1300880:intron 35.0%
GTTCACAGTGAATGCATTTA+AGG + chr8_3:62631853-62631872 None:intergenic 35.0%
TTTCAACGACGATAGTATCT+CGG + chr8_3:62632135-62632154 None:intergenic 35.0%
CAATTCTTCACTTGCTTCAT+TGG - chr8_3:62632241-62632260 Msa1300880:CDS 35.0%
CAGGTGTGTTTCATTCAATT+AGG - chr8_3:62632270-62632289 Msa1300880:CDS 35.0%
CAGACATCTTATTCGATGTT+AGG - chr8_3:62632331-62632350 Msa1300880:CDS 35.0%
TGATTTAGATGGTTATGACC+TGG - chr8_3:62632362-62632381 Msa1300880:intron 35.0%
GGTTATGACCTGGAAAATTA+AGG - chr8_3:62632372-62632391 Msa1300880:intron 35.0%
CTGAGGATAATCTATTAGCA+AGG + chr8_3:62632631-62632650 None:intergenic 35.0%
TGCCAACAAAATTATAGGCT+AGG - chr8_3:62632688-62632707 Msa1300880:intron 35.0%
GCCAACAAAATTATAGGCTA+GGG - chr8_3:62632689-62632708 Msa1300880:intron 35.0%
! TCCCTAGCCTATAATTTTGT+TGG + chr8_3:62632693-62632712 None:intergenic 35.0%
! TGAAGACACAAAGGCAATTT+TGG + chr8_3:62632827-62632846 None:intergenic 35.0%
!!! TTTTCTGGCTCACCAAATTT+TGG - chr8_3:62632976-62632995 Msa1300880:CDS 35.0%
!!! TCACCAAATTTTGGTGTCAT+GGG - chr8_3:62632985-62633004 Msa1300880:CDS 35.0%
!! ACCAACAAGCTCATTTTTCA+CGG - chr8_3:62633038-62633057 Msa1300880:CDS 35.0%
!!! TTAATGGCTAAAGTTTTGGG+TGG + chr8_3:62633186-62633205 None:intergenic 35.0%
!! TTAGCCATTAAAAGGTGTCA+CGG - chr8_3:62633195-62633214 Msa1300880:five_prime_UTR 35.0%
TTGGAGGATAAGGTTGTTGT+TGG + chr8_3:62630761-62630780 None:intergenic 40.0%
! TGGGAATTTGGAACATTTGG+AGG + chr8_3:62630777-62630796 None:intergenic 40.0%
AAGACATGGCAATGGGAATT+TGG + chr8_3:62630789-62630808 None:intergenic 40.0%
ACAGGGTTGTAAGCATATGT+TGG + chr8_3:62630939-62630958 None:intergenic 40.0%
! CTTTTGGTCACACTTAGTGA+TGG + chr8_3:62631011-62631030 None:intergenic 40.0%
ACTCAATGAAAGGACCAAAC+TGG + chr8_3:62631057-62631076 None:intergenic 40.0%
AGTTTGGTCCTTTCATTGAG+TGG - chr8_3:62631056-62631075 Msa1300880:exon 40.0%
GTCCTTTCATTGAGTGGTAA+GGG - chr8_3:62631062-62631081 Msa1300880:exon 40.0%
AACCCTTACCACTCAATGAA+AGG + chr8_3:62631067-62631086 None:intergenic 40.0%
! ATTACCTGTTTCTTTGGTGG+AGG + chr8_3:62631198-62631217 None:intergenic 40.0%
! CACATTACCTGTTTCTTTGG+TGG + chr8_3:62631201-62631220 None:intergenic 40.0%
!!! CTGAGTTTTCAAGTTCAGCA+GGG - chr8_3:62631540-62631559 Msa1300880:intron 40.0%
!! ACTTCAGCTGGTTCTGTATT+AGG - chr8_3:62631676-62631695 Msa1300880:intron 40.0%
!! CTTCAGCTGGTTCTGTATTA+GGG - chr8_3:62631677-62631696 Msa1300880:intron 40.0%
TTCTGTATTAGGGAAAGGCA+AGG - chr8_3:62631687-62631706 Msa1300880:intron 40.0%
CCCGTTTCATTGTGTATGTT+TGG - chr8_3:62631757-62631776 Msa1300880:CDS 40.0%
TTCAACGACGATAGTATCTC+GGG + chr8_3:62632134-62632153 None:intergenic 40.0%
GATACTATCGTCGTTGAAAC+TGG - chr8_3:62632136-62632155 Msa1300880:intron 40.0%
!! CTTGCTTCATTGGTTTCATC+AGG - chr8_3:62632251-62632270 Msa1300880:CDS 40.0%
AGGCCTTCTCTTGATTTAGA+TGG - chr8_3:62632351-62632370 Msa1300880:intron 40.0%
! CCAAACACCCTTAATTTTCC+AGG + chr8_3:62632383-62632402 None:intergenic 40.0%
!! CCTGGAAAATTAAGGGTGTT+TGG - chr8_3:62632380-62632399 Msa1300880:intron 40.0%
TGCGCTTAAGAAAGTTTCTG+AGG + chr8_3:62632648-62632667 None:intergenic 40.0%
!! GGCTGGTTGGTAAACTTAAA+GGG - chr8_3:62632881-62632900 Msa1300880:CDS 40.0%
!!! CTCACCAAATTTTGGTGTCA+TGG - chr8_3:62632984-62633003 Msa1300880:CDS 40.0%
!!! CACCAAATTTTGGTGTCATG+GGG - chr8_3:62632986-62633005 Msa1300880:CDS 40.0%
TTCCTAGATAAAGCTCTGCT+GGG + chr8_3:62633016-62633035 None:intergenic 40.0%
TTTCCTAGATAAAGCTCTGC+TGG + chr8_3:62633017-62633036 None:intergenic 40.0%
TCCGTGAAAAATGAGCTTGT+TGG + chr8_3:62633042-62633061 None:intergenic 40.0%
TTGTTCACTCAAGCTACTGA+AGG - chr8_3:62633138-62633157 Msa1300880:CDS 40.0%
GGTCCTTTCATTGAGTGGTA+AGG - chr8_3:62631061-62631080 Msa1300880:exon 45.0%
AGTTCCTCCACCAAAGAAAC+AGG - chr8_3:62631191-62631210 Msa1300880:intron 45.0%
!!! GCTGAGTTTTCAAGTTCAGC+AGG - chr8_3:62631539-62631558 Msa1300880:intron 45.0%
! TGCAGGGTATCTTCAAGACT+TGG - chr8_3:62631606-62631625 Msa1300880:intron 45.0%
!! GCTGGTTCTGTATTAGGGAA+AGG - chr8_3:62631682-62631701 Msa1300880:intron 45.0%
! GAAAGGCAAGGATGCTGATT+GGG - chr8_3:62631699-62631718 Msa1300880:intron 45.0%
AAGAAATCACGGTGACACTG+TGG - chr8_3:62631796-62631815 Msa1300880:intron 45.0%
TCACTGTGAACCCCTTTGTT+AGG - chr8_3:62631862-62631881 Msa1300880:intron 45.0%
! AGTATCTCGGGCATGAGTTT+TGG + chr8_3:62632122-62632141 None:intergenic 45.0%
!! GGGCTGGTTGGTAAACTTAA+AGG - chr8_3:62632880-62632899 Msa1300880:CDS 45.0%
TGCCCCATGACACCAAAATT+TGG + chr8_3:62632991-62633010 None:intergenic 45.0%
CGGATCATGAAGTTTGAGCT+TGG - chr8_3:62633058-62633077 Msa1300880:CDS 45.0%
! TCTGCCGTGACACCTTTTAA+TGG + chr8_3:62633202-62633221 None:intergenic 45.0%
!! ATTAAAAGGTGTCACGGCAG+AGG - chr8_3:62633201-62633220 Msa1300880:five_prime_UTR 45.0%
GGAAAGGCAAGGATGCTGAT+TGG - chr8_3:62631698-62631717 Msa1300880:intron 50.0%
CTCAGACTTCTCTTCAGGAC+TGG + chr8_3:62632210-62632229 None:intergenic 50.0%
CAGTCCTGAAGAGAAGTCTG+AGG - chr8_3:62632208-62632227 Msa1300880:intron 50.0%
TCCTGAAGAGAAGTCTGAGG+TGG - chr8_3:62632211-62632230 Msa1300880:intron 50.0%
TCCACCTCAGACTTCTCTTC+AGG + chr8_3:62632215-62632234 None:intergenic 50.0%
GGCAGTTGCTCAGAATGATG+TGG - chr8_3:62632795-62632814 Msa1300880:CDS 50.0%
TGCAGAGGCTGAAGACACAA+AGG + chr8_3:62632836-62632855 None:intergenic 50.0%
CAGCCTCTGCAATTGAGAAG+TGG - chr8_3:62632845-62632864 Msa1300880:CDS 50.0%
GGTCCACTTCTCAATTGCAG+AGG + chr8_3:62632851-62632870 None:intergenic 50.0%
AGAAGTGGACCTCCTTGACA+GGG - chr8_3:62632860-62632879 Msa1300880:CDS 50.0%
TTTACCAACCAGCCCTGTCA+AGG + chr8_3:62632875-62632894 None:intergenic 50.0%
! GTCCCAGCAGAGCTTTATCT+AGG - chr8_3:62633011-62633030 Msa1300880:CDS 50.0%
GAGAAGTGGACCTCCTTGAC+AGG - chr8_3:62632859-62632878 Msa1300880:CDS 55.0%
! ACCTCCTTGACAGGGCTGGT+TGG - chr8_3:62632868-62632887 Msa1300880:CDS 60.0%
ACCAACCAGCCCTGTCAAGG+AGG + chr8_3:62632872-62632891 None:intergenic 60.0%
GTGGACCTCCTTGACAGGGC+TGG - chr8_3:62632864-62632883 Msa1300880:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 62630737 62633240 62630737 ID=Msa1300880;Name=Msa1300880
chr8_3 mRNA 62630737 62633240 62630737 ID=Msa1300880-mRNA-1;Parent=Msa1300880;Name=Msa1300880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=82|1|1|1|1|1|4|331|238
chr8_3 exon 62630737 62631177 62630737 ID=Msa1300880-mRNA-1:exon:18613;Parent=Msa1300880-mRNA-1
chr8_3 exon 62631705 62631777 62631705 ID=Msa1300880-mRNA-1:exon:18612;Parent=Msa1300880-mRNA-1
chr8_3 exon 62632227 62632366 62632227 ID=Msa1300880-mRNA-1:exon:18611;Parent=Msa1300880-mRNA-1
chr8_3 exon 62632765 62633240 62632765 ID=Msa1300880-mRNA-1:exon:18610;Parent=Msa1300880-mRNA-1
chr8_3 five_prime_UTR 62633159 62633240 62633159 ID=Msa1300880-mRNA-1:five_prime_utr;Parent=Msa1300880-mRNA-1
chr8_3 CDS 62632765 62633158 62632765 ID=Msa1300880-mRNA-1:cds;Parent=Msa1300880-mRNA-1
chr8_3 CDS 62632227 62632366 62632227 ID=Msa1300880-mRNA-1:cds;Parent=Msa1300880-mRNA-1
chr8_3 CDS 62631705 62631777 62631705 ID=Msa1300880-mRNA-1:cds;Parent=Msa1300880-mRNA-1
chr8_3 CDS 62631068 62631177 62631068 ID=Msa1300880-mRNA-1:cds;Parent=Msa1300880-mRNA-1
chr8_3 three_prime_UTR 62630737 62631067 62630737 ID=Msa1300880-mRNA-1:three_prime_utr;Parent=Msa1300880-mRNA-1
Gene Sequence

>Msa1300880

ATGCGCCAAAAAATAAACAAAACAAAAGAGAAAGAAAAAAAAAACATGGCATCAAATTTTCTCTCAACAGCAAACCCTTTTCATCTAGCATCTTCATCACAATCTTCATTAGTAACACCAACATATGCTTACAACCCTGTCAAATGCAATGTGAAAAGACAATTAACTCCTTGCAAAGTAGTTAATCAACCATCACTAAGTGTGACCAAAAGAGACATATCTATAGGTTTTATTACCAGTTTGGTCCTTTCATTGAGTGGTAAGGGTTTGTTTGATGCTAATGCTGCAATACTTGAAGCAGATGATGATGTTGAGCTTTTGGAAAAAGTAAAGAAAGATAGAAAGAAGAGACTTGAGAAACAAGGTGTCATTAGTTCCTCCACCAAAGAAACAGGGTATCTTCAAGACTTGGTGTACAAATTGAGTGAAGTTGGTCAAGCAATTGAAAAAAATGATCTAACTTCAGCTGGTTCTGTATTAGGGAAAGGCAAGGATGCTGATTGGGTGCAAAAAGCTAATATAGCTTTGAATAAGCTCAGCTCCAGTCCTGAAGAGAAGTCTGAGGTGGACACATTCAATTCTTCACTTGCTTCATTGGTTTCATCAGTTGCTCAGAATGATGTGGAGTCGTCCAAAATTGCCTTTGTGTCTTCAGCCTCTGCAATTGAGAAGTGGACCTCCTTGACAGGGCTGGTTGGTAAACTTAAAGGGATTTGA

Protein sequence

>Msa1300880

MRQKINKTKEKEKKNMASNFLSTANPFHLASSSQSSLVTPTYAYNPVKCNVKRQLTPCKVVNQPSLSVTKRDISIGFITSLVLSLSGKGLFDANAAILEADDDVELLEKVKKDRKKRLEKQGVISSSTKETGYLQDLVYKLSEVGQAIEKNDLTSAGSVLGKGKDADWVQKANIALNKLSSSPEEKSEVDTFNSSLASLVSSVAQNDVESSKIAFVSSASAIEKWTSLTGLVGKLKGI*