AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0144340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0144340 MtrunA17_Chr1g0161421 94.767 172 9 0 1 172 1 172 1.31e-113 320
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0144340 AT2G01755.1 57.627 118 50 0 54 171 56 173 2.98e-42 139
Msa0144340 AT2G01755.2 57.627 118 50 0 54 171 62 179 3.96e-42 139

Find 75 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTCTATAGATAGAATAAA+AGG 0.213144 1_4:+3798042 Msa0144340:CDS
TTTGGTTGTTTAAGCAAATA+AGG 0.229192 1_4:+3797318 Msa0144340:five_prime_UTR
ATGGTCCATTGCATCAAATT+TGG 0.268744 1_4:-3798367 None:intergenic
AACCAAAGGTGGGAGGAATT+TGG 0.292113 1_4:-3797302 None:intergenic
ACCAAAGGCTTATACCTCTT+TGG 0.304276 1_4:-3797532 None:intergenic
TGCATATTGTATGGTAAATA+TGG 0.313570 1_4:-3797371 None:intergenic
TCAAATATTGGTCGCAACTA+TGG 0.319270 1_4:+3798269 Msa0144340:three_prime_UTR
TAAGTACTTCTACTTCATTT+TGG 0.333138 1_4:-3797697 None:intergenic
AACGTTGGGAATGACACTTT+TGG 0.355154 1_4:-3797233 None:intergenic
GGAAAGTTGTCAATTGATAA+TGG 0.357903 1_4:-3797458 None:intergenic
CCATGGCATCATTGTCCATT+TGG 0.363669 1_4:-3797420 None:intergenic
AAATTGTGTTCTTAAGCATA+TGG 0.369867 1_4:+3798413 Msa0144340:three_prime_UTR
AAATGTTCGACATCAAATAT+TGG 0.371113 1_4:+3798257 Msa0144340:three_prime_UTR
AGAATGCTTCTTGTTGGGTC+AGG 0.383377 1_4:-3798000 None:intergenic
TTCCAAATTCCTCCCACCTT+TGG 0.387105 1_4:+3797300 Msa0144340:five_prime_UTR
GAAGATAGAGATGATGAGTA+TGG 0.389990 1_4:+3797593 Msa0144340:CDS
TTGGAAATGTCTTGAAGATA+AGG 0.391167 1_4:-3797283 None:intergenic
GCTGGAAGAATGCTTCTTGT+TGG 0.394629 1_4:-3798006 None:intergenic
CTTCTGCAGATACTCAATAT+TGG 0.406034 1_4:-3798079 None:intergenic
CTGGAAGAATGCTTCTTGTT+GGG 0.406470 1_4:-3798005 None:intergenic
GACTTTATCACTGCCCTGGC+TGG 0.412026 1_4:-3798024 None:intergenic
TGTCCATTTGGCCATACCCT+TGG 0.430122 1_4:-3797408 None:intergenic
CAATGAGGAGATTTCAAAGT+TGG 0.430947 1_4:+3797619 Msa0144340:CDS
TCAATATTGGCAGGGTCAAA+AGG 0.439860 1_4:-3798066 None:intergenic
GTCCATTTGGCCATACCCTT+GGG 0.442034 1_4:-3797407 None:intergenic
CTCTATCTTCATCCTCATCT+TGG 0.448503 1_4:-3797580 None:intergenic
TTGTCAATTGATAATGGTAT+AGG 0.449082 1_4:-3797452 None:intergenic
TGCAGATACTCAATATTGGC+AGG 0.450870 1_4:-3798075 None:intergenic
AGTAGAAGTACTTATCTTCA+AGG 0.451782 1_4:+3797706 Msa0144340:CDS
ATAAGGTTGGGATAGTGCTT+TGG 0.456496 1_4:-3797266 None:intergenic
AAATGTCTTGAAGATAAGGT+TGG 0.462844 1_4:-3797279 None:intergenic
TTCCCAAGGGTATGGCCAAA+TGG 0.469349 1_4:+3797405 Msa0144340:CDS
ACCAAAGAGGTATAAGCCTT+TGG 0.474169 1_4:+3797531 Msa0144340:CDS
ATACCCTTGGGAAGTGTAGT+AGG 0.478990 1_4:-3797395 None:intergenic
GGACAATGATGCCATGGCCT+AGG 0.481592 1_4:+3797426 Msa0144340:CDS
TTGAACCAAATTTGATGCAA+TGG 0.481681 1_4:+3798362 Msa0144340:three_prime_UTR
CAAGAAGCATTCTTCCAGCC+AGG 0.483504 1_4:+3798010 Msa0144340:CDS
TTGGCAATTACACAAACGTT+GGG 0.487876 1_4:-3797247 None:intergenic
GTAGTAGGATGCATATTGTA+TGG 0.494568 1_4:-3797380 None:intergenic
GAATGCTTCTTGTTGGGTCA+GGG 0.497042 1_4:-3797999 None:intergenic
CACAAGCTTACATTGTGAGT+TGG 0.506810 1_4:-3797479 None:intergenic
AATGTCTTGAAGATAAGGTT+GGG 0.509719 1_4:-3797278 None:intergenic
AGTCTATAGATAGAATAAAA+GGG 0.523947 1_4:+3798043 Msa0144340:CDS
TTTGCTTAAACAACCAAAGG+TGG 0.530223 1_4:-3797313 None:intergenic
GCCTCCTTGCACCACACCAA+AGG 0.530257 1_4:-3797547 None:intergenic
AATGCTTCTTGTTGGGTCAG+GGG 0.544161 1_4:-3797998 None:intergenic
TACTACACTTCCCAAGGGTA+TGG 0.545556 1_4:+3797397 Msa0144340:CDS
TTTGTCTTGAATTCTTCCCA+TGG 0.554335 1_4:-3798108 None:intergenic
ATCTGCAGAAGGATGTTCCA+TGG 0.555118 1_4:+3798091 Msa0144340:CDS
TCAACCATGCCACACAATGA+TGG 0.559292 1_4:-3798386 None:intergenic
GATAATGGTATAGGTAGCCT+AGG 0.559854 1_4:-3797443 None:intergenic
TTATTTGCTTAAACAACCAA+AGG 0.562137 1_4:-3797316 None:intergenic
TTGCTTAAACAACCAAAGGT+GGG 0.569736 1_4:-3797312 None:intergenic
TATAGACTTTATCACTGCCC+TGG 0.571801 1_4:-3798028 None:intergenic
TTTGGCAATTACACAAACGT+TGG 0.572622 1_4:-3797248 None:intergenic
TAAGCCTTTGGTGTGGTGCA+AGG 0.575947 1_4:+3797543 Msa0144340:CDS
ACTCATTGTTCATGCACTTG+TGG 0.576626 1_4:+3797673 Msa0144340:CDS
GCATCCTACTACACTTCCCA+AGG 0.594031 1_4:+3797391 Msa0144340:CDS
AAGAAGCATTCTTCCAGCCA+GGG 0.602074 1_4:+3798011 Msa0144340:CDS
TTCTATAGTCAATCAGCAAG+AGG 0.607447 1_4:+3797644 Msa0144340:CDS
AGGGGAAGTACCATAGCTCA+AGG 0.608247 1_4:-3797980 None:intergenic
TGGACCATCATTGTGTGGCA+TGG 0.612007 1_4:+3798382 Msa0144340:three_prime_UTR
TCTGCAGAAGGATGTTCCAT+GGG 0.613447 1_4:+3798092 Msa0144340:CDS
CAATATTGAGTATCTGCAGA+AGG 0.617485 1_4:+3798080 Msa0144340:CDS
CTTAAACAACCAAAGGTGGG+AGG 0.622050 1_4:-3797309 None:intergenic
CATCCTACTACACTTCCCAA+GGG 0.625588 1_4:+3797392 Msa0144340:CDS
CCAAATGGACAATGATGCCA+TGG 0.626699 1_4:+3797420 Msa0144340:CDS
GGTATAGGTAGCCTAGGCCA+TGG 0.632885 1_4:-3797437 None:intergenic
GCAAATTAGATACCAAGATG+AGG 0.635629 1_4:+3797568 Msa0144340:CDS
GCAGATACTCAATATTGGCA+GGG 0.648369 1_4:-3798074 None:intergenic
TTAGATTTGAGCAACCAAAG+AGG 0.657562 1_4:+3797518 Msa0144340:CDS
TGATGAGTATGGACACAATG+AGG 0.668828 1_4:+3797604 Msa0144340:CDS
GCCTTTGGTGTGGTGCAAGG+AGG 0.677190 1_4:+3797546 Msa0144340:CDS
TGCAATGGACCATCATTGTG+TGG 0.707267 1_4:+3798377 Msa0144340:three_prime_UTR
AGAGGTATAAGCCTTTGGTG+TGG 0.717085 1_4:+3797536 Msa0144340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAATTTGTTTGTTTTAT+TGG - chr1_4:3797785-3797804 None:intergenic 10.0%
!!! TTTTTTTTCTAATTAGAAAA+AGG + chr1_4:3797826-3797845 Msa0144340:intron 10.0%
!!! AAATAATTTGTTTGTTTTAT+TGG - chr1_4:3797785-3797804 None:intergenic 10.0%
!!! TTTTTTTTCTAATTAGAAAA+AGG + chr1_4:3797826-3797845 Msa0144340:intron 10.0%
!!! TTGTTTGTTTTATTGGTTAT+TGG - chr1_4:3797778-3797797 None:intergenic 20.0%
!! AAGTCTATAGATAGAATAAA+AGG + chr1_4:3798042-3798061 Msa0144340:CDS 20.0%
!! AGTCTATAGATAGAATAAAA+GGG + chr1_4:3798043-3798062 Msa0144340:CDS 20.0%
!!! TTGTTTGTTTTATTGGTTAT+TGG - chr1_4:3797778-3797797 None:intergenic 20.0%
!! AAGTCTATAGATAGAATAAA+AGG + chr1_4:3798042-3798061 Msa0144340:CDS 20.0%
!! AGTCTATAGATAGAATAAAA+GGG + chr1_4:3798043-3798062 Msa0144340:CDS 20.0%
! TTATTTGCTTAAACAACCAA+AGG - chr1_4:3797319-3797338 None:intergenic 25.0%
! TTTGGTTGTTTAAGCAAATA+AGG + chr1_4:3797318-3797337 Msa0144340:five_prime_UTR 25.0%
! TGCATATTGTATGGTAAATA+TGG - chr1_4:3797374-3797393 None:intergenic 25.0%
!!! TTGTCAATTGATAATGGTAT+AGG - chr1_4:3797455-3797474 None:intergenic 25.0%
!! TAAGTACTTCTACTTCATTT+TGG - chr1_4:3797700-3797719 None:intergenic 25.0%
! CCATTTGCAAAACAAAAATT+TGG - chr1_4:3797883-3797902 None:intergenic 25.0%
!!! CCAAATTTTTGTTTTGCAAA+TGG + chr1_4:3797880-3797899 Msa0144340:intron 25.0%
! AAATGTTCGACATCAAATAT+TGG + chr1_4:3798257-3798276 Msa0144340:three_prime_UTR 25.0%
! AAATTGTGTTCTTAAGCATA+TGG + chr1_4:3798413-3798432 Msa0144340:three_prime_UTR 25.0%
! TTATTTGCTTAAACAACCAA+AGG - chr1_4:3797319-3797338 None:intergenic 25.0%
! TTTGGTTGTTTAAGCAAATA+AGG + chr1_4:3797318-3797337 Msa0144340:five_prime_UTR 25.0%
! TGCATATTGTATGGTAAATA+TGG - chr1_4:3797374-3797393 None:intergenic 25.0%
!!! TTGTCAATTGATAATGGTAT+AGG - chr1_4:3797455-3797474 None:intergenic 25.0%
!! TAAGTACTTCTACTTCATTT+TGG - chr1_4:3797700-3797719 None:intergenic 25.0%
! CCATTTGCAAAACAAAAATT+TGG - chr1_4:3797883-3797902 None:intergenic 25.0%
!!! CCAAATTTTTGTTTTGCAAA+TGG + chr1_4:3797880-3797899 Msa0144340:intron 25.0%
! AAATGTTCGACATCAAATAT+TGG + chr1_4:3798257-3798276 Msa0144340:three_prime_UTR 25.0%
! AAATTGTGTTCTTAAGCATA+TGG + chr1_4:3798413-3798432 Msa0144340:three_prime_UTR 25.0%
AATGTCTTGAAGATAAGGTT+GGG - chr1_4:3797281-3797300 None:intergenic 30.0%
AAATGTCTTGAAGATAAGGT+TGG - chr1_4:3797282-3797301 None:intergenic 30.0%
TTGGAAATGTCTTGAAGATA+AGG - chr1_4:3797286-3797305 None:intergenic 30.0%
GGAAAGTTGTCAATTGATAA+TGG - chr1_4:3797461-3797480 None:intergenic 30.0%
!! AGTAGAAGTACTTATCTTCA+AGG + chr1_4:3797706-3797725 Msa0144340:CDS 30.0%
ACTTATCTTCAAGGTAAGTT+TGG + chr1_4:3797715-3797734 Msa0144340:intron 30.0%
TGACAAACCATTTCATTTCA+GGG + chr1_4:3797946-3797965 Msa0144340:intron 30.0%
TTGAACCAAATTTGATGCAA+TGG + chr1_4:3798362-3798381 Msa0144340:three_prime_UTR 30.0%
AATGTCTTGAAGATAAGGTT+GGG - chr1_4:3797281-3797300 None:intergenic 30.0%
AAATGTCTTGAAGATAAGGT+TGG - chr1_4:3797282-3797301 None:intergenic 30.0%
TTGGAAATGTCTTGAAGATA+AGG - chr1_4:3797286-3797305 None:intergenic 30.0%
GGAAAGTTGTCAATTGATAA+TGG - chr1_4:3797461-3797480 None:intergenic 30.0%
!! AGTAGAAGTACTTATCTTCA+AGG + chr1_4:3797706-3797725 Msa0144340:CDS 30.0%
ACTTATCTTCAAGGTAAGTT+TGG + chr1_4:3797715-3797734 Msa0144340:intron 30.0%
TGACAAACCATTTCATTTCA+GGG + chr1_4:3797946-3797965 Msa0144340:intron 30.0%
TTGAACCAAATTTGATGCAA+TGG + chr1_4:3798362-3798381 Msa0144340:three_prime_UTR 30.0%
TTGGCAATTACACAAACGTT+GGG - chr1_4:3797250-3797269 None:intergenic 35.0%
TTTGGCAATTACACAAACGT+TGG - chr1_4:3797251-3797270 None:intergenic 35.0%
TTGCTTAAACAACCAAAGGT+GGG - chr1_4:3797315-3797334 None:intergenic 35.0%
TTTGCTTAAACAACCAAAGG+TGG - chr1_4:3797316-3797335 None:intergenic 35.0%
GTAGTAGGATGCATATTGTA+TGG - chr1_4:3797383-3797402 None:intergenic 35.0%
TTAGATTTGAGCAACCAAAG+AGG + chr1_4:3797518-3797537 Msa0144340:CDS 35.0%
GCAAATTAGATACCAAGATG+AGG + chr1_4:3797568-3797587 Msa0144340:CDS 35.0%
GAAGATAGAGATGATGAGTA+TGG + chr1_4:3797593-3797612 Msa0144340:CDS 35.0%
CAATGAGGAGATTTCAAAGT+TGG + chr1_4:3797619-3797638 Msa0144340:CDS 35.0%
TTCTATAGTCAATCAGCAAG+AGG + chr1_4:3797644-3797663 Msa0144340:CDS 35.0%
GTGACAAACCATTTCATTTC+AGG + chr1_4:3797945-3797964 Msa0144340:intron 35.0%
GACAAACCATTTCATTTCAG+GGG + chr1_4:3797947-3797966 Msa0144340:intron 35.0%
AGAAAACCCCTGAAATGAAA+TGG - chr1_4:3797956-3797975 None:intergenic 35.0%
! TTTTCTTCATCCTTGAGCTA+TGG + chr1_4:3797970-3797989 Msa0144340:CDS 35.0%
CTTCTGCAGATACTCAATAT+TGG - chr1_4:3798082-3798101 None:intergenic 35.0%
CAATATTGAGTATCTGCAGA+AGG + chr1_4:3798080-3798099 Msa0144340:CDS 35.0%
TTTGTCTTGAATTCTTCCCA+TGG - chr1_4:3798111-3798130 None:intergenic 35.0%
TCAAATATTGGTCGCAACTA+TGG + chr1_4:3798269-3798288 Msa0144340:three_prime_UTR 35.0%
ATGGTCCATTGCATCAAATT+TGG - chr1_4:3798370-3798389 None:intergenic 35.0%
TTGGCAATTACACAAACGTT+GGG - chr1_4:3797250-3797269 None:intergenic 35.0%
TTTGGCAATTACACAAACGT+TGG - chr1_4:3797251-3797270 None:intergenic 35.0%
TTGCTTAAACAACCAAAGGT+GGG - chr1_4:3797315-3797334 None:intergenic 35.0%
TTTGCTTAAACAACCAAAGG+TGG - chr1_4:3797316-3797335 None:intergenic 35.0%
GTAGTAGGATGCATATTGTA+TGG - chr1_4:3797383-3797402 None:intergenic 35.0%
TTAGATTTGAGCAACCAAAG+AGG + chr1_4:3797518-3797537 Msa0144340:CDS 35.0%
GCAAATTAGATACCAAGATG+AGG + chr1_4:3797568-3797587 Msa0144340:CDS 35.0%
GAAGATAGAGATGATGAGTA+TGG + chr1_4:3797593-3797612 Msa0144340:CDS 35.0%
CAATGAGGAGATTTCAAAGT+TGG + chr1_4:3797619-3797638 Msa0144340:CDS 35.0%
TTCTATAGTCAATCAGCAAG+AGG + chr1_4:3797644-3797663 Msa0144340:CDS 35.0%
GTGACAAACCATTTCATTTC+AGG + chr1_4:3797945-3797964 Msa0144340:intron 35.0%
GACAAACCATTTCATTTCAG+GGG + chr1_4:3797947-3797966 Msa0144340:intron 35.0%
AGAAAACCCCTGAAATGAAA+TGG - chr1_4:3797956-3797975 None:intergenic 35.0%
! TTTTCTTCATCCTTGAGCTA+TGG + chr1_4:3797970-3797989 Msa0144340:CDS 35.0%
CTTCTGCAGATACTCAATAT+TGG - chr1_4:3798082-3798101 None:intergenic 35.0%
CAATATTGAGTATCTGCAGA+AGG + chr1_4:3798080-3798099 Msa0144340:CDS 35.0%
TTTGTCTTGAATTCTTCCCA+TGG - chr1_4:3798111-3798130 None:intergenic 35.0%
TCAAATATTGGTCGCAACTA+TGG + chr1_4:3798269-3798288 Msa0144340:three_prime_UTR 35.0%
ATGGTCCATTGCATCAAATT+TGG - chr1_4:3798370-3798389 None:intergenic 35.0%
! ACGTTGGGAATGACACTTTT+GGG - chr1_4:3797235-3797254 None:intergenic 40.0%
! AACGTTGGGAATGACACTTT+TGG - chr1_4:3797236-3797255 None:intergenic 40.0%
ATAAGGTTGGGATAGTGCTT+TGG - chr1_4:3797269-3797288 None:intergenic 40.0%
! GATAATGGTATAGGTAGCCT+AGG - chr1_4:3797446-3797465 None:intergenic 40.0%
CACAAGCTTACATTGTGAGT+TGG - chr1_4:3797482-3797501 None:intergenic 40.0%
! ACCAAAGAGGTATAAGCCTT+TGG + chr1_4:3797531-3797550 Msa0144340:CDS 40.0%
ACCAAAGGCTTATACCTCTT+TGG - chr1_4:3797535-3797554 None:intergenic 40.0%
CTCTATCTTCATCCTCATCT+TGG - chr1_4:3797583-3797602 None:intergenic 40.0%
TGATGAGTATGGACACAATG+AGG + chr1_4:3797604-3797623 Msa0144340:CDS 40.0%
ACTCATTGTTCATGCACTTG+TGG + chr1_4:3797673-3797692 Msa0144340:CDS 40.0%
CTGGAAGAATGCTTCTTGTT+GGG - chr1_4:3798008-3798027 None:intergenic 40.0%
TATAGACTTTATCACTGCCC+TGG - chr1_4:3798031-3798050 None:intergenic 40.0%
TCAATATTGGCAGGGTCAAA+AGG - chr1_4:3798069-3798088 None:intergenic 40.0%
GCAGATACTCAATATTGGCA+GGG - chr1_4:3798077-3798096 None:intergenic 40.0%
TGCAGATACTCAATATTGGC+AGG - chr1_4:3798078-3798097 None:intergenic 40.0%
! ACGTTGGGAATGACACTTTT+GGG - chr1_4:3797235-3797254 None:intergenic 40.0%
! AACGTTGGGAATGACACTTT+TGG - chr1_4:3797236-3797255 None:intergenic 40.0%
ATAAGGTTGGGATAGTGCTT+TGG - chr1_4:3797269-3797288 None:intergenic 40.0%
! GATAATGGTATAGGTAGCCT+AGG - chr1_4:3797446-3797465 None:intergenic 40.0%
CACAAGCTTACATTGTGAGT+TGG - chr1_4:3797482-3797501 None:intergenic 40.0%
! ACCAAAGAGGTATAAGCCTT+TGG + chr1_4:3797531-3797550 Msa0144340:CDS 40.0%
ACCAAAGGCTTATACCTCTT+TGG - chr1_4:3797535-3797554 None:intergenic 40.0%
CTCTATCTTCATCCTCATCT+TGG - chr1_4:3797583-3797602 None:intergenic 40.0%
TGATGAGTATGGACACAATG+AGG + chr1_4:3797604-3797623 Msa0144340:CDS 40.0%
ACTCATTGTTCATGCACTTG+TGG + chr1_4:3797673-3797692 Msa0144340:CDS 40.0%
CTGGAAGAATGCTTCTTGTT+GGG - chr1_4:3798008-3798027 None:intergenic 40.0%
TATAGACTTTATCACTGCCC+TGG - chr1_4:3798031-3798050 None:intergenic 40.0%
TCAATATTGGCAGGGTCAAA+AGG - chr1_4:3798069-3798088 None:intergenic 40.0%
GCAGATACTCAATATTGGCA+GGG - chr1_4:3798077-3798096 None:intergenic 40.0%
TGCAGATACTCAATATTGGC+AGG - chr1_4:3798078-3798097 None:intergenic 40.0%
TTCCAAATTCCTCCCACCTT+TGG + chr1_4:3797300-3797319 Msa0144340:five_prime_UTR 45.0%
AACCAAAGGTGGGAGGAATT+TGG - chr1_4:3797305-3797324 None:intergenic 45.0%
CTTAAACAACCAAAGGTGGG+AGG - chr1_4:3797312-3797331 None:intergenic 45.0%
CATCCTACTACACTTCCCAA+GGG + chr1_4:3797392-3797411 Msa0144340:CDS 45.0%
! ATACCCTTGGGAAGTGTAGT+AGG - chr1_4:3797398-3797417 None:intergenic 45.0%
TACTACACTTCCCAAGGGTA+TGG + chr1_4:3797397-3797416 Msa0144340:CDS 45.0%
CCATGGCATCATTGTCCATT+TGG - chr1_4:3797423-3797442 None:intergenic 45.0%
CCAAATGGACAATGATGCCA+TGG + chr1_4:3797420-3797439 Msa0144340:CDS 45.0%
! AGAGGTATAAGCCTTTGGTG+TGG + chr1_4:3797536-3797555 Msa0144340:CDS 45.0%
AATGCTTCTTGTTGGGTCAG+GGG - chr1_4:3798001-3798020 None:intergenic 45.0%
GAATGCTTCTTGTTGGGTCA+GGG - chr1_4:3798002-3798021 None:intergenic 45.0%
AGAATGCTTCTTGTTGGGTC+AGG - chr1_4:3798003-3798022 None:intergenic 45.0%
GCTGGAAGAATGCTTCTTGT+TGG - chr1_4:3798009-3798028 None:intergenic 45.0%
!! AAGAAGCATTCTTCCAGCCA+GGG + chr1_4:3798011-3798030 Msa0144340:CDS 45.0%
ATCTGCAGAAGGATGTTCCA+TGG + chr1_4:3798091-3798110 Msa0144340:CDS 45.0%
TCTGCAGAAGGATGTTCCAT+GGG + chr1_4:3798092-3798111 Msa0144340:CDS 45.0%
TGCAATGGACCATCATTGTG+TGG + chr1_4:3798377-3798396 Msa0144340:three_prime_UTR 45.0%
TCAACCATGCCACACAATGA+TGG - chr1_4:3798389-3798408 None:intergenic 45.0%
TTCCAAATTCCTCCCACCTT+TGG + chr1_4:3797300-3797319 Msa0144340:five_prime_UTR 45.0%
AACCAAAGGTGGGAGGAATT+TGG - chr1_4:3797305-3797324 None:intergenic 45.0%
CTTAAACAACCAAAGGTGGG+AGG - chr1_4:3797312-3797331 None:intergenic 45.0%
CATCCTACTACACTTCCCAA+GGG + chr1_4:3797392-3797411 Msa0144340:CDS 45.0%
! ATACCCTTGGGAAGTGTAGT+AGG - chr1_4:3797398-3797417 None:intergenic 45.0%
TACTACACTTCCCAAGGGTA+TGG + chr1_4:3797397-3797416 Msa0144340:CDS 45.0%
CCATGGCATCATTGTCCATT+TGG - chr1_4:3797423-3797442 None:intergenic 45.0%
CCAAATGGACAATGATGCCA+TGG + chr1_4:3797420-3797439 Msa0144340:CDS 45.0%
! AGAGGTATAAGCCTTTGGTG+TGG + chr1_4:3797536-3797555 Msa0144340:CDS 45.0%
AATGCTTCTTGTTGGGTCAG+GGG - chr1_4:3798001-3798020 None:intergenic 45.0%
GAATGCTTCTTGTTGGGTCA+GGG - chr1_4:3798002-3798021 None:intergenic 45.0%
AGAATGCTTCTTGTTGGGTC+AGG - chr1_4:3798003-3798022 None:intergenic 45.0%
GCTGGAAGAATGCTTCTTGT+TGG - chr1_4:3798009-3798028 None:intergenic 45.0%
!! AAGAAGCATTCTTCCAGCCA+GGG + chr1_4:3798011-3798030 Msa0144340:CDS 45.0%
ATCTGCAGAAGGATGTTCCA+TGG + chr1_4:3798091-3798110 Msa0144340:CDS 45.0%
TCTGCAGAAGGATGTTCCAT+GGG + chr1_4:3798092-3798111 Msa0144340:CDS 45.0%
TGCAATGGACCATCATTGTG+TGG + chr1_4:3798377-3798396 Msa0144340:three_prime_UTR 45.0%
TCAACCATGCCACACAATGA+TGG - chr1_4:3798389-3798408 None:intergenic 45.0%
GCATCCTACTACACTTCCCA+AGG + chr1_4:3797391-3797410 Msa0144340:CDS 50.0%
! TTCCCAAGGGTATGGCCAAA+TGG + chr1_4:3797405-3797424 Msa0144340:CDS 50.0%
GTCCATTTGGCCATACCCTT+GGG - chr1_4:3797410-3797429 None:intergenic 50.0%
TGTCCATTTGGCCATACCCT+TGG - chr1_4:3797411-3797430 None:intergenic 50.0%
! TAAGCCTTTGGTGTGGTGCA+AGG + chr1_4:3797543-3797562 Msa0144340:CDS 50.0%
!! AGGGGAAGTACCATAGCTCA+AGG - chr1_4:3797983-3798002 None:intergenic 50.0%
!! CAAGAAGCATTCTTCCAGCC+AGG + chr1_4:3798010-3798029 Msa0144340:CDS 50.0%
TGGACCATCATTGTGTGGCA+TGG + chr1_4:3798382-3798401 Msa0144340:three_prime_UTR 50.0%
GCATCCTACTACACTTCCCA+AGG + chr1_4:3797391-3797410 Msa0144340:CDS 50.0%
! TTCCCAAGGGTATGGCCAAA+TGG + chr1_4:3797405-3797424 Msa0144340:CDS 50.0%
GTCCATTTGGCCATACCCTT+GGG - chr1_4:3797410-3797429 None:intergenic 50.0%
TGTCCATTTGGCCATACCCT+TGG - chr1_4:3797411-3797430 None:intergenic 50.0%
! TAAGCCTTTGGTGTGGTGCA+AGG + chr1_4:3797543-3797562 Msa0144340:CDS 50.0%
!! AGGGGAAGTACCATAGCTCA+AGG - chr1_4:3797983-3798002 None:intergenic 50.0%
!! CAAGAAGCATTCTTCCAGCC+AGG + chr1_4:3798010-3798029 Msa0144340:CDS 50.0%
TGGACCATCATTGTGTGGCA+TGG + chr1_4:3798382-3798401 Msa0144340:three_prime_UTR 50.0%
GGACAATGATGCCATGGCCT+AGG + chr1_4:3797426-3797445 Msa0144340:CDS 55.0%
GGTATAGGTAGCCTAGGCCA+TGG - chr1_4:3797440-3797459 None:intergenic 55.0%
GACTTTATCACTGCCCTGGC+TGG - chr1_4:3798027-3798046 None:intergenic 55.0%
GGACAATGATGCCATGGCCT+AGG + chr1_4:3797426-3797445 Msa0144340:CDS 55.0%
GGTATAGGTAGCCTAGGCCA+TGG - chr1_4:3797440-3797459 None:intergenic 55.0%
GACTTTATCACTGCCCTGGC+TGG - chr1_4:3798027-3798046 None:intergenic 55.0%
! GCCTTTGGTGTGGTGCAAGG+AGG + chr1_4:3797546-3797565 Msa0144340:CDS 60.0%
GCCTCCTTGCACCACACCAA+AGG - chr1_4:3797550-3797569 None:intergenic 60.0%
! GCCTTTGGTGTGGTGCAAGG+AGG + chr1_4:3797546-3797565 Msa0144340:CDS 60.0%
GCCTCCTTGCACCACACCAA+AGG - chr1_4:3797550-3797569 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 3797211 3798441 3797211 ID=Msa0144340;Name=Msa0144340
chr1_4 mRNA 3797211 3798441 3797211 ID=Msa0144340-mRNA-1;Parent=Msa0144340;Name=Msa0144340-mRNA-1;_AED=0.01;_eAED=0.01;_QI=178|1|1|1|1|1|2|295|172
chr1_4 exon 3797211 3797727 3797211 ID=Msa0144340-mRNA-1:exon:1541;Parent=Msa0144340-mRNA-1
chr1_4 exon 3797967 3798441 3797967 ID=Msa0144340-mRNA-1:exon:1542;Parent=Msa0144340-mRNA-1
chr1_4 five_prime_UTR 3797211 3797388 3797211 ID=Msa0144340-mRNA-1:five_prime_utr;Parent=Msa0144340-mRNA-1
chr1_4 CDS 3797389 3797727 3797389 ID=Msa0144340-mRNA-1:cds;Parent=Msa0144340-mRNA-1
chr1_4 CDS 3797967 3798146 3797967 ID=Msa0144340-mRNA-1:cds;Parent=Msa0144340-mRNA-1
chr1_4 three_prime_UTR 3798147 3798441 3798147 ID=Msa0144340-mRNA-1:three_prime_utr;Parent=Msa0144340-mRNA-1
Gene Sequence

>Msa0144340

ATGCATCCTACTACACTTCCCAAGGGTATGGCCAAATGGACAATGATGCCATGGCCTAGGCTACCTATACCATTATCAATTGACAACTTTCCAACTCACAATGTAAGCTTGTGTTTTGACTTGAAAGAATTAGATTTGAGCAACCAAAGAGGTATAAGCCTTTGGTGTGGTGCAAGGAGGCAAATTAGATACCAAGATGAGGATGAAGATAGAGATGATGAGTATGGACACAATGAGGAGATTTCAAAGTTGGAATTCTATAGTCAATCAGCAAGAGGAGAAGCACTCATTGTTCATGCACTTGTGGACCAAAATGAAGTAGAAGTACTTATCTTCAAGGGGTTTTCTTCATCCTTGAGCTATGGTACTTCCCCTGACCCAACAAGAAGCATTCTTCCAGCCAGGGCAGTGATAAAGTCTATAGATAGAATAAAAGGGCCTTTTGACCCTGCCAATATTGAGTATCTGCAGAAGGATGTTCCATGGGAAGAATTCAAGACAAATATTCTTTCTAGCTAA

Protein sequence

>Msa0144340

MHPTTLPKGMAKWTMMPWPRLPIPLSIDNFPTHNVSLCFDLKELDLSNQRGISLWCGARRQIRYQDEDEDRDDEYGHNEEISKLEFYSQSARGEALIVHALVDQNEVEVLIFKGFSSSLSYGTSPDPTRSILPARAVIKSIDRIKGPFDPANIEYLQKDVPWEEFKTNILSS*