AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0704570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0704570 MtrunA17_Chr8g0382711 98.592 213 3 0 1 213 1 213 1.62e-155 429
Msa0704570 MtrunA17_Chr4g0052911 53.846 130 59 1 76 204 108 237 1.10e-42 144
Msa0704570 MtrunA17_Chr8g0339171 40.000 110 55 2 104 213 46 144 1.09e-19 82.0
Msa0704570 MtrunA17_Chr4g0033841 28.090 178 111 4 36 203 48 218 5.01e-17 76.6
Msa0704570 MtrunA17_Chr5g0396231 39.623 106 50 4 102 206 407 499 1.61e-15 74.7
Msa0704570 MtrunA17_Chr7g0234801 38.235 102 50 3 108 208 52 141 8.71e-13 66.6
Msa0704570 MtrunA17_Chr8g0377771 36.885 122 63 4 89 208 36 145 1.47e-12 65.9
Msa0704570 MtrunA17_Chr8g0339141 36.449 107 55 3 103 208 53 147 8.32e-12 63.9
Msa0704570 MtrunA17_Chr1g0179681 35.075 134 66 5 81 206 123 243 1.34e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0704570 AT4G39710.1 76.471 170 40 0 44 213 48 217 1.11e-94 275
Msa0704570 AT4G39710.3 76.471 170 40 0 44 213 48 217 1.11e-94 275
Msa0704570 AT4G39710.2 75.630 119 29 0 44 162 48 166 2.27e-62 192
Msa0704570 AT5G45680.1 56.911 123 53 0 83 205 84 206 6.53e-44 146
Msa0704570 AT5G48580.1 39.806 103 51 2 104 206 48 139 1.65e-18 79.3
Msa0704570 AT3G25220.1 40.777 103 50 2 104 206 48 139 1.04e-17 77.0
Msa0704570 AT2G43560.1 32.317 164 85 5 49 203 66 212 1.15e-15 73.2
Msa0704570 AT2G43560.2 32.317 164 85 5 49 203 10 156 1.34e-15 72.0
Msa0704570 AT5G05420.1 37.736 106 52 4 102 206 50 142 1.21e-14 68.6
Msa0704570 AT3G25230.1 37.008 127 66 4 84 208 32 146 3.18e-13 68.2
Msa0704570 AT3G25230.2 37.008 127 66 4 84 208 32 146 3.32e-13 68.2
Msa0704570 AT5G48570.1 36.634 101 53 2 108 208 65 154 1.26e-11 63.5
Msa0704570 AT3G10060.1 30.000 160 91 5 55 206 70 216 2.55e-11 61.2

Find 98 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATTGGATCAGGGAATTT+TGG 0.124572 4_4:+77011003 Msa0704570:CDS
GGATCCTCTTTACTCTTAAA+AGG 0.137016 4_4:-77012624 None:intergenic
CCAAAGATGAATCATGATTT+TGG 0.177029 4_4:+77012857 Msa0704570:three_prime_UTR
AGTTAAAATGTACAATTTCT+TGG 0.227295 4_4:+77012898 Msa0704570:three_prime_UTR
AATGTGAATTTCAGGTAATT+AGG 0.235234 4_4:+77010981 Msa0704570:intron
TAAATTTGTTGGTCTTTATT+CGG 0.242676 4_4:+77011699 Msa0704570:CDS
TTAAAAGGGGTATTCTATTC+AGG 0.254794 4_4:-77012609 None:intergenic
GGATTAAAGATACAAGTAAT+AGG 0.266749 4_4:-77012794 None:intergenic
TGCTGAGCATAACACCTTAT+TGG 0.271308 4_4:-77010480 None:intergenic
TGCGATTATGTTGAGGGTTT+TGG 0.282156 4_4:+77010671 Msa0704570:CDS
GGTAATTAGGGGATTGGATC+AGG 0.291509 4_4:+77010994 Msa0704570:intron
GAGCTTAATTATGTTAAATC+TGG 0.297049 4_4:+77010638 Msa0704570:CDS
GTTAGGCAGATTCTCCTTCC+TGG 0.307741 4_4:+77012534 Msa0704570:three_prime_UTR
AAATTTGTTGGTCTTTATTC+GGG 0.311128 4_4:+77011700 Msa0704570:CDS
CCAAAATCATGATTCATCTT+TGG 0.311610 4_4:-77012857 None:intergenic
CTGTATGATATTAAATTTGT+TGG 0.318710 4_4:+77011688 Msa0704570:CDS
CGTTAGTTGGAATTGGTATT+GGG 0.335154 4_4:+77010525 Msa0704570:CDS
ATGTGAATTTCAGGTAATTA+GGG 0.335286 4_4:+77010982 Msa0704570:intron
GAACCTGCAGGCTGCTTCTC+AGG 0.336346 4_4:+77011180 Msa0704570:CDS
TTTGGTGATGAAGCTCCTTT+AGG 0.338411 4_4:+77010689 Msa0704570:CDS
GAGAAGCAGCCTGCAGGTTC+AGG 0.345343 4_4:-77011177 None:intergenic
ACACACCCTAAGATAGAAAA+TGG 0.350166 4_4:+77010370 Msa0704570:exon
CTCTCATTCTCACTCTGTTC+AGG 0.375218 4_4:+77010395 Msa0704570:CDS
AAGAAGCCGTTAGTTGGAAT+TGG 0.375819 4_4:+77010518 Msa0704570:CDS
CCGTTAGTTGGAATTGGTAT+TGG 0.376392 4_4:+77010524 Msa0704570:CDS
CATATGAACCGCACATGGAT+TGG 0.400176 4_4:+77011766 Msa0704570:three_prime_UTR
CCTTCTTGTATGAAATTGAA+TGG 0.401384 4_4:+77010440 Msa0704570:CDS
GATCCTCTTTACTCTTAAAA+GGG 0.410956 4_4:-77012623 None:intergenic
AAGCTATAAAGTATCCAATA+AGG 0.422362 4_4:+77010466 Msa0704570:CDS
AATTATGTTAAATCTGGGCT+TGG 0.422396 4_4:+77010644 Msa0704570:CDS
TATGTCCGACTGCACTAAAC+AGG 0.422517 4_4:-77012581 None:intergenic
ATTGTAGCAGCATGGGTAAT+GGG 0.427828 4_4:+77010548 Msa0704570:CDS
AATTGTTTAGAGTAATGAAA+TGG 0.430565 4_4:+77012480 Msa0704570:intron
ATTTCAGGTAATTAGGGGAT+TGG 0.431931 4_4:+77010988 Msa0704570:intron
AACGAAAAGAAGCCGTTAGT+TGG 0.432641 4_4:+77010512 Msa0704570:CDS
GGTTATTGCGATTATGTTGA+GGG 0.433499 4_4:+77010665 Msa0704570:CDS
ATGATATGAGTAACTCCATT+TGG 0.450015 4_4:-77010309 None:intergenic
GATTAAAGATACAAGTAATA+GGG 0.452910 4_4:-77012793 None:intergenic
GGGATTAACGGCGTTGGATG+CGG 0.454068 4_4:+77010568 Msa0704570:CDS
ATATGAACCGCACATGGATT+GGG 0.455362 4_4:+77011767 Msa0704570:three_prime_UTR
AGCTTAATTATGTTAAATCT+GGG 0.462974 4_4:+77010639 Msa0704570:CDS
GTGTGTATATAGTTCTCTTA+AGG 0.477568 4_4:-77010347 None:intergenic
AGCATGGGTAATGGGATTAA+CGG 0.477643 4_4:+77010556 Msa0704570:CDS
AATAGGTGACTGCAATATAC+CGG 0.483379 4_4:+77011651 Msa0704570:intron
ATTTCATACAAGAAGGAAAA+CGG 0.483988 4_4:-77010433 None:intergenic
CCATTCAATTTCATACAAGA+AGG 0.487470 4_4:-77010440 None:intergenic
CACAGAGGAAGAAGATCAAA+AGG 0.492107 4_4:-77012815 None:intergenic
CTAATATATATCACTGCACC+AGG 0.496741 4_4:-77012650 None:intergenic
GATTGTAGCAGCATGGGTAA+TGG 0.497305 4_4:+77010547 Msa0704570:CDS
AGAAAGGATGGTATGCCAAA+TGG 0.512086 4_4:+77010294 None:intergenic
TGGTTATTGCGATTATGTTG+AGG 0.512709 4_4:+77010664 Msa0704570:CDS
AATTTAATACCTATCCGCAT+TGG 0.515893 4_4:-77011043 None:intergenic
ATTCCTCCATTGTTAGCGTA+TGG 0.515896 4_4:+77011153 Msa0704570:CDS
CTATTCCTGTTTAGTGCAGT+CGG 0.517728 4_4:+77012576 Msa0704570:three_prime_UTR
AATTTGAGAGAGCTGGAACC+AGG 0.519696 4_4:-77012552 None:intergenic
CTTTGGCATTTCATTGCAGA+CGG 0.521690 4_4:-77012840 None:intergenic
AAACCTGAGAAGCAGCCTGC+AGG 0.532161 4_4:-77011183 None:intergenic
ATAGTAGTTATAAACGTGCT+AGG 0.536904 4_4:+77010855 Msa0704570:CDS
TTAATACCTATCCGCATTGG+AGG 0.539094 4_4:-77011040 None:intergenic
TACAGAAGAGTTGCATTGCC+CGG 0.539306 4_4:-77011670 None:intergenic
GAATAGTAATTTGAGAGAGC+TGG 0.541808 4_4:-77012559 None:intergenic
ATATATCACTGCACCAGGGT+TGG 0.542561 4_4:-77012645 None:intergenic
GGTAATGGGATTAACGGCGT+TGG 0.544791 4_4:+77010562 Msa0704570:CDS
AGGCCACTCACTATGCGTAT+TGG 0.545910 4_4:+77010875 Msa0704570:CDS
ACATCAATAAGCTCTCCTAA+AGG 0.553954 4_4:-77010704 None:intergenic
GCGTATGGTCCTGAACCTGC+AGG 0.559980 4_4:+77011168 Msa0704570:CDS
CTCACTATGCGTATTGGTGT+TGG 0.565060 4_4:+77010881 Msa0704570:CDS
TATTGGGATTGTAGCAGCAT+GGG 0.571835 4_4:+77010541 Msa0704570:CDS
TGAGTGTGGATCGACTTGTT+AGG 0.572466 4_4:+77012517 Msa0704570:three_prime_UTR
TCAATGAAGTCAAAATTGAT+CGG 0.581630 4_4:+77011732 Msa0704570:exon
TGATATATATTAGACAAGGC+TGG 0.589136 4_4:+77012660 Msa0704570:three_prime_UTR
GCCACATGGTGTAGAAAGGA+TGG 0.591372 4_4:+77010282 None:intergenic
AATTGAATACTATGCTACTG+TGG 0.592481 4_4:+77010601 Msa0704570:CDS
GTAATTAGGGGATTGGATCA+GGG 0.593610 4_4:+77010995 Msa0704570:CDS
ACTATCAAATACTATTCCAT+CGG 0.594477 4_4:-77010837 None:intergenic
ATTGAATACTATGCTACTGT+GGG 0.611936 4_4:+77010602 Msa0704570:CDS
ATCCTCTTTACTCTTAAAAG+GGG 0.619462 4_4:-77012622 None:intergenic
CCAATACCAATTCCAACTAA+CGG 0.620051 4_4:-77010524 None:intergenic
ATACGCATATGAACCGCACA+TGG 0.620763 4_4:+77011761 Msa0704570:three_prime_UTR
TGAGAGAGCTGGAACCAGGA+AGG 0.621370 4_4:-77012548 None:intergenic
TATGCGTATTGGTGTTGGCA+AGG 0.622438 4_4:+77010886 Msa0704570:CDS
GTATTGGGATTGTAGCAGCA+TGG 0.623097 4_4:+77010540 Msa0704570:CDS
TGTGAATTTCAGGTAATTAG+GGG 0.623369 4_4:+77010983 Msa0704570:intron
ACATAATTAAGCTCACACAT+TGG 0.625130 4_4:-77010629 None:intergenic
GGCGTACCTCCAATGCGGAT+AGG 0.639198 4_4:+77011034 Msa0704570:CDS
AGAAGGAAAACGGTTATGAA+CGG 0.643601 4_4:-77010423 None:intergenic
GTGTTATGCTCAGCACGTAA+CGG 0.647081 4_4:+77010488 Msa0704570:CDS
ATAGGTGACTGCAATATACC+GGG 0.650180 4_4:+77011652 Msa0704570:intron
TCAGGACCATACGCTAACAA+TGG 0.656714 4_4:-77011159 None:intergenic
GGACCATACGCTAACAATGG+AGG 0.666829 4_4:-77011156 None:intergenic
GAGTAAAGAGGATCCAACCC+TGG 0.668199 4_4:+77012632 Msa0704570:three_prime_UTR
ACACCAATACGCATAGTGAG+TGG 0.668322 4_4:-77010878 None:intergenic
TATACTGCTAGATTCGCCGA+TGG 0.684653 4_4:+77010821 Msa0704570:CDS
AAACTCACCCAATCCATGTG+CGG 0.699883 4_4:-77011774 None:intergenic
GTGAAGGCGTACCTCCAATG+CGG 0.724987 4_4:+77011029 Msa0704570:CDS
GCAGTGATATATATTAGACA+AGG 0.729639 4_4:+77012656 Msa0704570:three_prime_UTR
TAATATATATCACTGCACCA+GGG 0.746565 4_4:-77012649 None:intergenic
TCATTGCAGACGGCACACAG+AGG 0.766659 4_4:-77012830 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTACTATTTTTACTT+AGG + chr4_4:77011111-77011130 Msa0704570:intron 10.0%
!!! TTATAAACTAATTTTTTCTA+TGG + chr4_4:77012338-77012357 Msa0704570:intron 10.0%
!!! TTTTTAATAATTTTTTTGAC+TGG + chr4_4:77012449-77012468 Msa0704570:intron 10.0%
!! AGCTTAATTATGTTAAATCT+GGG + chr4_4:77010639-77010658 Msa0704570:CDS 20.0%
!!! ATTTACTATTTTTACTTAGG+TGG + chr4_4:77011114-77011133 Msa0704570:intron 20.0%
!!! TTTACTATTTTTACTTAGGT+GGG + chr4_4:77011115-77011134 Msa0704570:intron 20.0%
!! TGAAACATTAATCATGTATT+TGG + chr4_4:77011314-77011333 Msa0704570:intron 20.0%
!! ATTATTATCAGAAGAAGAAA+AGG + chr4_4:77011583-77011602 Msa0704570:intron 20.0%
!! CTGTATGATATTAAATTTGT+TGG + chr4_4:77011688-77011707 Msa0704570:CDS 20.0%
!!! TAAATTTGTTGGTCTTTATT+CGG + chr4_4:77011699-77011718 Msa0704570:CDS 20.0%
!!! AATTGTTTAGAGTAATGAAA+TGG + chr4_4:77012480-77012499 Msa0704570:intron 20.0%
!! GATTAAAGATACAAGTAATA+GGG - chr4_4:77012796-77012815 None:intergenic 20.0%
!! AGTTAAAATGTACAATTTCT+TGG + chr4_4:77012898-77012917 Msa0704570:three_prime_UTR 20.0%
! ATTTCATACAAGAAGGAAAA+CGG - chr4_4:77010436-77010455 None:intergenic 25.0%
!! AAGCTATAAAGTATCCAATA+AGG + chr4_4:77010466-77010485 Msa0704570:CDS 25.0%
! GAGCTTAATTATGTTAAATC+TGG + chr4_4:77010638-77010657 Msa0704570:CDS 25.0%
! ACTATCAAATACTATTCCAT+CGG - chr4_4:77010840-77010859 None:intergenic 25.0%
!!! TTTCTTGTTTTTGTTGAGTT+TGG + chr4_4:77010945-77010964 Msa0704570:intron 25.0%
!! AATGTGAATTTCAGGTAATT+AGG + chr4_4:77010981-77011000 Msa0704570:intron 25.0%
!! ATGTGAATTTCAGGTAATTA+GGG + chr4_4:77010982-77011001 Msa0704570:intron 25.0%
! TACATTGGTAGAAAATATAC+CGG - chr4_4:77011365-77011384 None:intergenic 25.0%
!! AAAAGACCATGGATTTTATT+AGG + chr4_4:77011535-77011554 Msa0704570:intron 25.0%
!!! AGTTTTGTCATTGATTCAAT+AGG + chr4_4:77011634-77011653 Msa0704570:intron 25.0%
!!! AAATTTGTTGGTCTTTATTC+GGG + chr4_4:77011700-77011719 Msa0704570:CDS 25.0%
! TCAATGAAGTCAAAATTGAT+CGG + chr4_4:77011732-77011751 Msa0704570:exon 25.0%
! CAAAATATTCTCAAAAGATC+AGG - chr4_4:77011800-77011819 None:intergenic 25.0%
!!! CTACTTAAAATTTTGACACA+GGG + chr4_4:77012075-77012094 Msa0704570:intron 25.0%
!!! GCATATCATTGTAGTTTTAA+AGG - chr4_4:77012376-77012395 None:intergenic 25.0%
! TTAAAACTACAATGATATGC+TGG + chr4_4:77012376-77012395 Msa0704570:intron 25.0%
! GGTCTTGATTATCTAAAAAT+AGG + chr4_4:77012415-77012434 Msa0704570:intron 25.0%
! GGATTAAAGATACAAGTAAT+AGG - chr4_4:77012797-77012816 None:intergenic 25.0%
ATGATATGAGTAACTCCATT+TGG - chr4_4:77010312-77010331 None:intergenic 30.0%
GTGTGTATATAGTTCTCTTA+AGG - chr4_4:77010350-77010369 None:intergenic 30.0%
CCATTCAATTTCATACAAGA+AGG - chr4_4:77010443-77010462 None:intergenic 30.0%
CCTTCTTGTATGAAATTGAA+TGG + chr4_4:77010440-77010459 Msa0704570:CDS 30.0%
AATTGAATACTATGCTACTG+TGG + chr4_4:77010601-77010620 Msa0704570:CDS 30.0%
ATTGAATACTATGCTACTGT+GGG + chr4_4:77010602-77010621 Msa0704570:CDS 30.0%
ACATAATTAAGCTCACACAT+TGG - chr4_4:77010632-77010651 None:intergenic 30.0%
AATTATGTTAAATCTGGGCT+TGG + chr4_4:77010644-77010663 Msa0704570:CDS 30.0%
ATAGTAGTTATAAACGTGCT+AGG + chr4_4:77010855-77010874 Msa0704570:CDS 30.0%
TTGTTGAGTTTGGACTTATA+AGG + chr4_4:77010955-77010974 Msa0704570:intron 30.0%
TGTTGAGTTTGGACTTATAA+GGG + chr4_4:77010956-77010975 Msa0704570:intron 30.0%
! TGTGAATTTCAGGTAATTAG+GGG + chr4_4:77010983-77011002 Msa0704570:intron 30.0%
AATTTAATACCTATCCGCAT+TGG - chr4_4:77011046-77011065 None:intergenic 30.0%
CTAACATATTTGATGCAGAT+AGG + chr4_4:77011070-77011089 Msa0704570:intron 30.0%
!! ATGTGATTTGCTACTAAACA+TGG + chr4_4:77011233-77011252 Msa0704570:intron 30.0%
TAAAAAATGTAGCAGACACT+TGG + chr4_4:77011282-77011301 Msa0704570:intron 30.0%
ACATTGGTAGAAAATATACC+GGG - chr4_4:77011364-77011383 None:intergenic 30.0%
! GTCTTTTCAATTGTAGATTG+CGG - chr4_4:77011522-77011541 None:intergenic 30.0%
ATCTACAATTGAAAAGACCA+TGG + chr4_4:77011524-77011543 Msa0704570:intron 30.0%
TTACATGACATGGTCAATAT+TGG - chr4_4:77011949-77011968 None:intergenic 30.0%
! CATACTGTGTTTTATCATGA+AGG - chr4_4:77012009-77012028 None:intergenic 30.0%
!! GCTACTTAAAATTTTGACAC+AGG + chr4_4:77012074-77012093 Msa0704570:intron 30.0%
CACAAGAAAAATGTTCACAA+AGG - chr4_4:77012102-77012121 None:intergenic 30.0%
! AACATTTTTCTTGTGCATCA+TGG + chr4_4:77012107-77012126 Msa0704570:intron 30.0%
CATTCATCTTAAATACCACT+CGG - chr4_4:77012240-77012259 None:intergenic 30.0%
! GAGTGGTATTTAAGATGAAT+GGG + chr4_4:77012239-77012258 Msa0704570:intron 30.0%
! AGTGGTATTTAAGATGAATG+GGG + chr4_4:77012240-77012259 Msa0704570:intron 30.0%
!!! ATGAAATGGACTTTTTTTGC+TGG + chr4_4:77012494-77012513 Msa0704570:three_prime_UTR 30.0%
!! TTAAAAGGGGTATTCTATTC+AGG - chr4_4:77012612-77012631 None:intergenic 30.0%
ATCCTCTTTACTCTTAAAAG+GGG - chr4_4:77012625-77012644 None:intergenic 30.0%
GATCCTCTTTACTCTTAAAA+GGG - chr4_4:77012626-77012645 None:intergenic 30.0%
TAATATATATCACTGCACCA+GGG - chr4_4:77012652-77012671 None:intergenic 30.0%
GCAGTGATATATATTAGACA+AGG + chr4_4:77012656-77012675 Msa0704570:three_prime_UTR 30.0%
TGATATATATTAGACAAGGC+TGG + chr4_4:77012660-77012679 Msa0704570:three_prime_UTR 30.0%
CCAAAATCATGATTCATCTT+TGG - chr4_4:77012860-77012879 None:intergenic 30.0%
! CCAAAGATGAATCATGATTT+TGG + chr4_4:77012857-77012876 Msa0704570:three_prime_UTR 30.0%
! AGATGAATCATGATTTTGGA+TGG + chr4_4:77012861-77012880 Msa0704570:three_prime_UTR 30.0%
ACACACCCTAAGATAGAAAA+TGG + chr4_4:77010370-77010389 Msa0704570:exon 35.0%
!!! GAGTGCCATTTTCTATCTTA+GGG - chr4_4:77010378-77010397 None:intergenic 35.0%
!!! AGAGTGCCATTTTCTATCTT+AGG - chr4_4:77010379-77010398 None:intergenic 35.0%
AGAAGGAAAACGGTTATGAA+CGG - chr4_4:77010426-77010445 None:intergenic 35.0%
CCAATACCAATTCCAACTAA+CGG - chr4_4:77010527-77010546 None:intergenic 35.0%
CGTTAGTTGGAATTGGTATT+GGG + chr4_4:77010525-77010544 Msa0704570:CDS 35.0%
TGGTTATTGCGATTATGTTG+AGG + chr4_4:77010664-77010683 Msa0704570:CDS 35.0%
GGTTATTGCGATTATGTTGA+GGG + chr4_4:77010665-77010684 Msa0704570:CDS 35.0%
ACATCAATAAGCTCTCCTAA+AGG - chr4_4:77010707-77010726 None:intergenic 35.0%
TAAGGGTGAATGTGAATTTC+AGG + chr4_4:77010973-77010992 Msa0704570:intron 35.0%
! ATTTCAGGTAATTAGGGGAT+TGG + chr4_4:77010988-77011007 Msa0704570:intron 35.0%
ATTGGTAGAAAATATACCGG+GGG - chr4_4:77011362-77011381 None:intergenic 35.0%
CATTGGTAGAAAATATACCG+GGG - chr4_4:77011363-77011382 None:intergenic 35.0%
!!! TGTAGCTGCTTGTTTTACAT+TGG - chr4_4:77011380-77011399 None:intergenic 35.0%
! ACCATGGATTTTATTAGGCT+GGG + chr4_4:77011540-77011559 Msa0704570:intron 35.0%
AATAGGTGACTGCAATATAC+CGG + chr4_4:77011651-77011670 Msa0704570:intron 35.0%
GATAAAACAATCTGAGTGCT+AGG - chr4_4:77011849-77011868 None:intergenic 35.0%
ATTGACCATGTCATGTAATC+AGG + chr4_4:77011951-77011970 Msa0704570:intron 35.0%
! CGAGTGGTATTTAAGATGAA+TGG + chr4_4:77012238-77012257 Msa0704570:intron 35.0%
GAATAGTAATTTGAGAGAGC+TGG - chr4_4:77012562-77012581 None:intergenic 35.0%
!! TACCCCTTTTAAGAGTAAAG+AGG + chr4_4:77012620-77012639 Msa0704570:three_prime_UTR 35.0%
GGATCCTCTTTACTCTTAAA+AGG - chr4_4:77012627-77012646 None:intergenic 35.0%
CTAATATATATCACTGCACC+AGG - chr4_4:77012653-77012672 None:intergenic 35.0%
TGCTGAGCATAACACCTTAT+TGG - chr4_4:77010483-77010502 None:intergenic 40.0%
AACGAAAAGAAGCCGTTAGT+TGG + chr4_4:77010512-77010531 Msa0704570:CDS 40.0%
AAGAAGCCGTTAGTTGGAAT+TGG + chr4_4:77010518-77010537 Msa0704570:CDS 40.0%
CCGTTAGTTGGAATTGGTAT+TGG + chr4_4:77010524-77010543 Msa0704570:CDS 40.0%
TATTGGGATTGTAGCAGCAT+GGG + chr4_4:77010541-77010560 Msa0704570:CDS 40.0%
ATTGTAGCAGCATGGGTAAT+GGG + chr4_4:77010548-77010567 Msa0704570:CDS 40.0%
!! AGCATGGGTAATGGGATTAA+CGG + chr4_4:77010556-77010575 Msa0704570:CDS 40.0%
! TGCGATTATGTTGAGGGTTT+TGG + chr4_4:77010671-77010690 Msa0704570:CDS 40.0%
!! TTTGGTGATGAAGCTCCTTT+AGG + chr4_4:77010689-77010708 Msa0704570:CDS 40.0%
GTAATTAGGGGATTGGATCA+GGG + chr4_4:77010995-77011014 Msa0704570:CDS 40.0%
! GGATTGGATCAGGGAATTTT+GGG + chr4_4:77011004-77011023 Msa0704570:CDS 40.0%
! GATTGGATCAGGGAATTTTG+GGG + chr4_4:77011005-77011024 Msa0704570:CDS 40.0%
! ATTGGATCAGGGAATTTTGG+GGG + chr4_4:77011006-77011025 Msa0704570:CDS 40.0%
TTAATACCTATCCGCATTGG+AGG - chr4_4:77011043-77011062 None:intergenic 40.0%
ATTCCTCCATTGTTAGCGTA+TGG + chr4_4:77011153-77011172 Msa0704570:CDS 40.0%
TTGGTAGAAAATATACCGGG+GGG - chr4_4:77011361-77011380 None:intergenic 40.0%
! GACCATGGATTTTATTAGGC+TGG + chr4_4:77011539-77011558 Msa0704570:intron 40.0%
TCCCAGCCTAATAAAATCCA+TGG - chr4_4:77011544-77011563 None:intergenic 40.0%
ATAGGTGACTGCAATATACC+GGG + chr4_4:77011652-77011671 Msa0704570:intron 40.0%
ATATGAACCGCACATGGATT+GGG + chr4_4:77011767-77011786 Msa0704570:three_prime_UTR 40.0%
AGAGCAAACAGAAAGTAAGC+TGG - chr4_4:77011871-77011890 None:intergenic 40.0%
AGCTTCCTGATTACATGACA+TGG - chr4_4:77011959-77011978 None:intergenic 40.0%
TTTGCTGACACACATGATCA+TGG + chr4_4:77012040-77012059 Msa0704570:intron 40.0%
CATCATTAACCTTATCCCAG+TGG + chr4_4:77012171-77012190 Msa0704570:intron 40.0%
TATACTGTTTGACAACCGAG+TGG + chr4_4:77012222-77012241 Msa0704570:intron 40.0%
!!! ACTTTTTTTGCTGGTGAGTG+TGG + chr4_4:77012503-77012522 Msa0704570:three_prime_UTR 40.0%
CTATTCCTGTTTAGTGCAGT+CGG + chr4_4:77012576-77012595 Msa0704570:three_prime_UTR 40.0%
CACAGAGGAAGAAGATCAAA+AGG - chr4_4:77012818-77012837 None:intergenic 40.0%
CTTTGGCATTTCATTGCAGA+CGG - chr4_4:77012843-77012862 None:intergenic 40.0%
CTCTCATTCTCACTCTGTTC+AGG + chr4_4:77010395-77010414 Msa0704570:CDS 45.0%
GTGTTATGCTCAGCACGTAA+CGG + chr4_4:77010488-77010507 Msa0704570:CDS 45.0%
GTATTGGGATTGTAGCAGCA+TGG + chr4_4:77010540-77010559 Msa0704570:CDS 45.0%
GATTGTAGCAGCATGGGTAA+TGG + chr4_4:77010547-77010566 Msa0704570:CDS 45.0%
TATACTGCTAGATTCGCCGA+TGG + chr4_4:77010821-77010840 Msa0704570:CDS 45.0%
ACACCAATACGCATAGTGAG+TGG - chr4_4:77010881-77010900 None:intergenic 45.0%
! CTCACTATGCGTATTGGTGT+TGG + chr4_4:77010881-77010900 Msa0704570:CDS 45.0%
!! TATGCGTATTGGTGTTGGCA+AGG + chr4_4:77010886-77010905 Msa0704570:CDS 45.0%
GGTAATTAGGGGATTGGATC+AGG + chr4_4:77010994-77011013 Msa0704570:intron 45.0%
! GGGATTGGATCAGGGAATTT+TGG + chr4_4:77011003-77011022 Msa0704570:CDS 45.0%
! TTGGATCAGGGAATTTTGGG+GGG + chr4_4:77011007-77011026 Msa0704570:CDS 45.0%
TCAGGACCATACGCTAACAA+TGG - chr4_4:77011162-77011181 None:intergenic 45.0%
TGGTAGAAAATATACCGGGG+GGG - chr4_4:77011360-77011379 None:intergenic 45.0%
AACAAGCAGCTACAGTGCTA+TGG + chr4_4:77011386-77011405 Msa0704570:intron 45.0%
TACAGAAGAGTTGCATTGCC+CGG - chr4_4:77011673-77011692 None:intergenic 45.0%
ATACGCATATGAACCGCACA+TGG + chr4_4:77011761-77011780 Msa0704570:three_prime_UTR 45.0%
CATATGAACCGCACATGGAT+TGG + chr4_4:77011766-77011785 Msa0704570:three_prime_UTR 45.0%
AAACTCACCCAATCCATGTG+CGG - chr4_4:77011777-77011796 None:intergenic 45.0%
TTAACCTTATCCCAGTGGCT+TGG + chr4_4:77012176-77012195 Msa0704570:intron 45.0%
GCTGGTATCTATGCATTCTC+TGG + chr4_4:77012394-77012413 Msa0704570:intron 45.0%
!! TGAGTGTGGATCGACTTGTT+AGG + chr4_4:77012517-77012536 Msa0704570:three_prime_UTR 45.0%
AATTTGAGAGAGCTGGAACC+AGG - chr4_4:77012555-77012574 None:intergenic 45.0%
TATGTCCGACTGCACTAAAC+AGG - chr4_4:77012584-77012603 None:intergenic 45.0%
ATATATCACTGCACCAGGGT+TGG - chr4_4:77012648-77012667 None:intergenic 45.0%
!! GGTAATGGGATTAACGGCGT+TGG + chr4_4:77010562-77010581 Msa0704570:CDS 50.0%
AGGCCACTCACTATGCGTAT+TGG + chr4_4:77010875-77010894 Msa0704570:CDS 50.0%
GGACCATACGCTAACAATGG+AGG - chr4_4:77011159-77011178 None:intergenic 50.0%
TAAGCCAAGCCACTGGGATA+AGG - chr4_4:77012183-77012202 None:intergenic 50.0%
GACGAATAAGCCAAGCCACT+GGG - chr4_4:77012189-77012208 None:intergenic 50.0%
TGACGAATAAGCCAAGCCAC+TGG - chr4_4:77012190-77012209 None:intergenic 50.0%
GTTAGGCAGATTCTCCTTCC+TGG + chr4_4:77012534-77012553 Msa0704570:three_prime_UTR 50.0%
GAGTAAAGAGGATCCAACCC+TGG + chr4_4:77012632-77012651 Msa0704570:three_prime_UTR 50.0%
! GGGATTAACGGCGTTGGATG+CGG + chr4_4:77010568-77010587 Msa0704570:CDS 55.0%
!! CAGGGAATTTTGGGGGGTGA+AGG + chr4_4:77011013-77011032 Msa0704570:CDS 55.0%
! GTGAAGGCGTACCTCCAATG+CGG + chr4_4:77011029-77011048 Msa0704570:CDS 55.0%
AAACCTGAGAAGCAGCCTGC+AGG - chr4_4:77011186-77011205 None:intergenic 55.0%
TGAGAGAGCTGGAACCAGGA+AGG - chr4_4:77012551-77012570 None:intergenic 55.0%
TCATTGCAGACGGCACACAG+AGG - chr4_4:77012833-77012852 None:intergenic 55.0%
GGCGTACCTCCAATGCGGAT+AGG + chr4_4:77011034-77011053 Msa0704570:CDS 60.0%
GCGTATGGTCCTGAACCTGC+AGG + chr4_4:77011168-77011187 Msa0704570:CDS 60.0%
GAGAAGCAGCCTGCAGGTTC+AGG - chr4_4:77011180-77011199 None:intergenic 60.0%
GAACCTGCAGGCTGCTTCTC+AGG + chr4_4:77011180-77011199 Msa0704570:CDS 60.0%
CCATTGTGCGTACGCCCCCC+CGG + chr4_4:77011343-77011362 Msa0704570:intron 70.0%
! CCGGGGGGGCGTACGCACAA+TGG - chr4_4:77011346-77011365 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 77010297 77012921 77010297 ID=Msa0704570;Name=Msa0704570
chr4_4 mRNA 77010297 77012921 77010297 ID=Msa0704570-mRNA-1;Parent=Msa0704570;Name=Msa0704570-mRNA-1;_AED=0.07;_eAED=0.07;_QI=92|1|1|1|0.8|0.66|6|482|213
chr4_4 exon 77010297 77010724 77010297 ID=Msa0704570-mRNA-1:exon:24307;Parent=Msa0704570-mRNA-1
chr4_4 exon 77010815 77010907 77010815 ID=Msa0704570-mRNA-1:exon:24308;Parent=Msa0704570-mRNA-1
chr4_4 exon 77010995 77011055 77010995 ID=Msa0704570-mRNA-1:exon:24309;Parent=Msa0704570-mRNA-1
chr4_4 exon 77011133 77011201 77011133 ID=Msa0704570-mRNA-1:exon:24310;Parent=Msa0704570-mRNA-1
chr4_4 exon 77011656 77011788 77011656 ID=Msa0704570-mRNA-1:exon:24311;Parent=Msa0704570-mRNA-1
chr4_4 exon 77012490 77012921 77012490 ID=Msa0704570-mRNA-1:exon:24312;Parent=Msa0704570-mRNA-1
chr4_4 five_prime_UTR 77010297 77010388 77010297 ID=Msa0704570-mRNA-1:five_prime_utr;Parent=Msa0704570-mRNA-1
chr4_4 CDS 77010389 77010724 77010389 ID=Msa0704570-mRNA-1:cds;Parent=Msa0704570-mRNA-1
chr4_4 CDS 77010815 77010907 77010815 ID=Msa0704570-mRNA-1:cds;Parent=Msa0704570-mRNA-1
chr4_4 CDS 77010995 77011055 77010995 ID=Msa0704570-mRNA-1:cds;Parent=Msa0704570-mRNA-1
chr4_4 CDS 77011133 77011201 77011133 ID=Msa0704570-mRNA-1:cds;Parent=Msa0704570-mRNA-1
chr4_4 CDS 77011656 77011738 77011656 ID=Msa0704570-mRNA-1:cds;Parent=Msa0704570-mRNA-1
chr4_4 three_prime_UTR 77011739 77011788 77011739 ID=Msa0704570-mRNA-1:three_prime_utr;Parent=Msa0704570-mRNA-1
chr4_4 three_prime_UTR 77012490 77012921 77012490 ID=Msa0704570-mRNA-1:three_prime_utr;Parent=Msa0704570-mRNA-1
Gene Sequence

>Msa0704570

ATGGCACTCTCATTCTCACTCTGTTCAGGCGCAACCGTTCATAACCGTTTTCCTTCTTGTATGAAATTGAATGGTAAAAGCTATAAAGTATCCAATAAGGTGTTATGCTCAGCACGTAACGGTAACGAAAAGAAGCCGTTAGTTGGAATTGGTATTGGGATTGTAGCAGCATGGGTAATGGGATTAACGGCGTTGGATGCGGATGCAACGAGAATTGAATACTATGCTACTGTGGGAGAGCCAATGTGTGAGCTTAATTATGTTAAATCTGGGCTTGGTTATTGCGATTATGTTGAGGGTTTTGGTGATGAAGCTCCTTTAGGAGAGCTTATTGATATTCACTATACTGCTAGATTCGCCGATGGAATAGTATTTGATAGTAGTTATAAACGTGCTAGGCCACTCACTATGCGTATTGGTGTTGGCAAGGTAATTAGGGGATTGGATCAGGGAATTTTGGGGGGTGAAGGCGTACCTCCAATGCGGATAGGTGGGAAACGCAAACTCATGATTCCTCCATTGTTAGCGTATGGTCCTGAACCTGCAGGCTGCTTCTCAGGTGACTGCAATATACCGGGCAATGCAACTCTTCTGTATGATATTAAATTTGTTGGTCTTTATTCGGGCAATCGAAGTCAATGA

Protein sequence

>Msa0704570

MALSFSLCSGATVHNRFPSCMKLNGKSYKVSNKVLCSARNGNEKKPLVGIGIGIVAAWVMGLTALDADATRIEYYATVGEPMCELNYVKSGLGYCDYVEGFGDEAPLGELIDIHYTARFADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMRIGGKRKLMIPPLLAYGPEPAGCFSGDCNIPGNATLLYDIKFVGLYSGNRSQ*