AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1355860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1355860 MtrunA17_Chr8g0386941 91.065 582 37 3 1 577 1 572 0.0 1031
Msa1355860 MtrunA17_Chr7g0247821 30.000 160 106 3 424 577 753 912 2.75e-13 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 94 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTAACATGGACATTAAT+TGG 0.098262 tig0015200:-15678 None:intergenic
ACAAGCTGTTGTAATGTTAT+TGG 0.222383 tig0015200:-16603 None:intergenic
ACAACACATGCTTGGAAGTT+TGG 0.253601 tig0015200:-16516 None:intergenic
ACCTAAGACAAATGACTTAA+TGG 0.259882 tig0015200:-16848 None:intergenic
AAGCACATCTGAACCAATTC+TGG 0.268014 tig0015200:-14302 None:intergenic
TCCTTTGATTTGTTGTTCAT+TGG 0.284502 tig0015200:-16273 None:intergenic
GCCATTAAGTCATTTGTCTT+AGG 0.288201 tig0015200:+16847 Msa1355860:three_prime_UTR
TTTATCCAACTGCCTACTAT+TGG 0.307894 tig0015200:-14037 None:intergenic
CCATCAATAAGTTTGATAAA+TGG 0.309576 tig0015200:-16353 None:intergenic
ACTATAACCTCTTCTTCTTC+TGG 0.312350 tig0015200:-15064 None:intergenic
AGACCTTATAACATCCTCTT+TGG 0.324442 tig0015200:+16248 Msa1355860:CDS
TGTGGCATGGTTCTTACTAT+TGG 0.324521 tig0015200:+13874 None:intergenic
CCATTTATCAAACTTATTGA+TGG 0.332391 tig0015200:+16353 Msa1355860:CDS
GAATGATCGGATAGCAGATT+TGG 0.343186 tig0015200:+15107 Msa1355860:CDS
TTTGATAAATGGCTCTTCAT+AGG 0.348408 tig0015200:-16342 None:intergenic
TTCCAAGTCCTGCGAACTGC+TGG 0.360062 tig0015200:-15610 None:intergenic
TACTAACATGGACATTAATT+GGG 0.364399 tig0015200:-15677 None:intergenic
TCACCAAATGCAAAATTTGA+AGG 0.381999 tig0015200:-15501 None:intergenic
TAATCTTCGTGAGGCTCATT+CGG 0.396050 tig0015200:+13999 Msa1355860:CDS
TCCCAGCAGTTCGCAGGACT+TGG 0.403469 tig0015200:+15608 Msa1355860:CDS
AAATGTGAATGGCGAATGTT+TGG 0.414827 tig0015200:+13970 Msa1355860:CDS
CATCTCTATGAAGTGCTTTG+AGG 0.416519 tig0015200:-15839 None:intergenic
ATTACAACAGCTTGTTGAAA+GGG 0.423151 tig0015200:+16611 Msa1355860:CDS
CATTCTATTTCTATCTTCCA+TGG 0.427164 tig0015200:-16872 None:intergenic
GAACTGCTGGGAAATTTACT+TGG 0.433594 tig0015200:-15597 None:intergenic
TCAAAACTTACATCAACATC+AGG 0.435516 tig0015200:-14346 None:intergenic
CAAGTGAAAGCAGAACAAAA+TGG 0.438289 tig0015200:+15327 Msa1355860:CDS
GTATATCATCGAATGTTTCA+TGG 0.442276 tig0015200:+16446 Msa1355860:CDS
TTTCACACCTTGGTCCTTCA+CGG 0.447121 tig0015200:-15787 None:intergenic
GGCAATGGGAAATCCAGAAT+TGG 0.447724 tig0015200:+14289 Msa1355860:intron
TCCATTCACTTCATCAAAAG+TGG 0.447779 tig0015200:-16385 None:intergenic
GATCCAAAGAGGATGTTATA+AGG 0.448481 tig0015200:-16251 None:intergenic
GTCATTTGTCTTAGGTTCCA+TGG 0.452543 tig0015200:+16855 Msa1355860:three_prime_UTR
TTGCAACTCATTACTAAAAG+TGG 0.454464 tig0015200:-15919 None:intergenic
TAAGACATGTCATGAGAGTA+AGG 0.458092 tig0015200:+15538 Msa1355860:CDS
ATGTGTTGTGAGGAAAGTTT+TGG 0.462231 tig0015200:+16530 Msa1355860:CDS
TAGAACATTAATCAATAACT+TGG 0.472348 tig0015200:+17128 Msa1355860:three_prime_UTR
CTTTCCTCACAACACATGCT+TGG 0.474299 tig0015200:-16524 None:intergenic
CTCAAAGCACTTCATAGAGA+TGG 0.475720 tig0015200:+15840 Msa1355860:CDS
TATCTTTCGATTGGAGAAAG+AGG 0.494534 tig0015200:-17041 None:intergenic
TCAAAGCACTTCATAGAGAT+GGG 0.495966 tig0015200:+15841 Msa1355860:CDS
GCAGTGCGGGACAACTGATT+CGG 0.510006 tig0015200:+15572 Msa1355860:CDS
CATTACAACAGCTTGTTGAA+AGG 0.512663 tig0015200:+16610 Msa1355860:CDS
CACTTTGCTGACACTAGCTC+TGG 0.514081 tig0015200:+15459 Msa1355860:CDS
TAAATTTCCCAGCAGTTCGC+AGG 0.515356 tig0015200:+15602 Msa1355860:CDS
TGGGTAGTTGCTCATGGTGG+TGG 0.521127 tig0015200:+16814 Msa1355860:three_prime_UTR
ATAATGTGCATGCAAATTGT+CGG 0.521272 tig0015200:-15985 None:intergenic
TGTTGTAATGTTATTGGTGA+TGG 0.522358 tig0015200:-16597 None:intergenic
CAATTTCTTCTGCATCAACA+TGG 0.524519 tig0015200:-16665 None:intergenic
ACTTGGCCAGACGTGAATCA+TGG 0.524559 tig0015200:+16634 Msa1355860:CDS
AGTCATCCATGATTCACGTC+TGG 0.529300 tig0015200:-16640 None:intergenic
GGAGAAAAGAACAGCAGTGC+GGG 0.535867 tig0015200:+15559 Msa1355860:CDS
GGTTTCCAATAGTAGGCAGT+TGG 0.538036 tig0015200:+14032 Msa1355860:CDS
TCCAAGTCCTGCGAACTGCT+GGG 0.538815 tig0015200:-15609 None:intergenic
ATCATAAATTTGATCACCGT+GGG 0.540757 tig0015200:+16795 Msa1355860:three_prime_UTR
ATGTTATAAGGTCTTCAAGA+TGG 0.541014 tig0015200:-16239 None:intergenic
GGCTCATTCGGATGGAAGAT+CGG 0.542039 tig0015200:+14011 Msa1355860:CDS
CTTCGTGAGGCTCATTCGGA+TGG 0.545723 tig0015200:+14003 Msa1355860:CDS
GAGATAAAACTTTCACACCT+TGG 0.547276 tig0015200:-15797 None:intergenic
GGACAGAAGATCTCCTCCTC+TGG 0.548594 tig0015200:+13939 Msa1355860:CDS
GAAGATCGGTTTCCAATAGT+AGG 0.549773 tig0015200:+14025 Msa1355860:CDS
ATTATTGAGAGTGATGCATA+TGG 0.552597 tig0015200:+17013 Msa1355860:three_prime_UTR
AGTTCGCAGGACTTGGAAGA+TGG 0.556294 tig0015200:+15615 Msa1355860:CDS
TCCAATGAACAACAAATCAA+AGG 0.561476 tig0015200:+16272 Msa1355860:CDS
GCAAGATCCTAACTCTCTGT+TGG 0.561889 tig0015200:+15275 Msa1355860:CDS
ATCTTTCGATTGGAGAAAGA+GGG 0.568464 tig0015200:-17040 None:intergenic
AATGTTATTGGTGATGGATG+AGG 0.570884 tig0015200:-16591 None:intergenic
GTATGCTCCAGAAGAAGAAG+AGG 0.572437 tig0015200:+15057 Msa1355860:CDS
TGGAATCTTTAATCTTCGTG+AGG 0.576871 tig0015200:+13990 Msa1355860:CDS
GTTGTTCATTGGATCCAAAG+AGG 0.590616 tig0015200:-16262 None:intergenic
ACAGCTTGTTGAAAGGGACT+TGG 0.590760 tig0015200:+16617 Msa1355860:CDS
GCAAAATAAATTGACCGTGA+AGG 0.591471 tig0015200:+15773 Msa1355860:CDS
GTGTACGTGTGGAGAATGAT+CGG 0.594868 tig0015200:+15094 Msa1355860:CDS
GATGATATACTCATGCAAGA+TGG 0.600077 tig0015200:-16433 None:intergenic
ATGTTATTGGTGATGGATGA+GGG 0.600743 tig0015200:-16590 None:intergenic
TCACCGTGGGTAGTTGCTCA+TGG 0.602050 tig0015200:+16808 Msa1355860:three_prime_UTR
AGAAGAAATTGCAATGGAGG+TGG 0.605756 tig0015200:+16677 Msa1355860:CDS
ACTAACATGGACATTAATTG+GGG 0.615194 tig0015200:-15676 None:intergenic
TCATGGTGGTGGAGACCGCA+TGG 0.624096 tig0015200:+16825 Msa1355860:three_prime_UTR
ACTTCCAAGCATGTGTTGTG+AGG 0.626643 tig0015200:+16520 Msa1355860:CDS
CAAAACTTACATCAACATCA+GGG 0.632189 tig0015200:-14345 None:intergenic
AAATTGACCGTGAAGGACCA+AGG 0.639782 tig0015200:+15780 Msa1355860:CDS
TAGTTGTAAGAGTGTACGTG+TGG 0.641450 tig0015200:+15083 Msa1355860:CDS
AATCATAAATTTGATCACCG+TGG 0.641648 tig0015200:+16794 Msa1355860:three_prime_UTR
TGCAGAAGAAATTGCAATGG+AGG 0.645966 tig0015200:+16674 Msa1355860:CDS
TCATTACTAAAAGTGGCCAC+AGG 0.656006 tig0015200:-15912 None:intergenic
GCACATTATGATATTCCTAG+AGG 0.662018 tig0015200:+15999 Msa1355860:CDS
CCACCATGAGCAACTACCCA+CGG 0.670027 tig0015200:-16811 None:intergenic
CAAAGCACTTCATAGAGATG+GGG 0.670872 tig0015200:+15842 Msa1355860:CDS
TGATGCAGAAGAAATTGCAA+TGG 0.674423 tig0015200:+16671 Msa1355860:CDS
CCGTGGGTAGTTGCTCATGG+TGG 0.710283 tig0015200:+16811 Msa1355860:three_prime_UTR
AGGAGAAAAGAACAGCAGTG+CGG 0.716182 tig0015200:+15558 Msa1355860:CDS
CAGTTGGATAAACACACCAG+TGG 0.724616 tig0015200:+14048 Msa1355860:CDS
CAAATGACTTAATGGCCATG+CGG 0.729978 tig0015200:-16840 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAAGAAAACTATTTTTTT+AGG - tig0015200:13915-13934 None:intergenic 15.0%
!! TATTATACTCATCTTAAATT+TGG + tig0015200:14241-14260 Msa1355860:intron 15.0%
!! TGTTAATAAATATCTAGAAA+GGG + tig0015200:14592-14611 Msa1355860:intron 15.0%
!!! ATTTGTAACTATTTTTTTAG+AGG - tig0015200:15430-15449 None:intergenic 15.0%
!! AAAAAACTAGTTATATAATG+AGG - tig0015200:16029-16048 None:intergenic 15.0%
!!! AAAATAGTTTTCTTCAATCA+TGG + tig0015200:13918-13937 Msa1355860:exon 20.0%
!!! TTCTTCTTTTTTAGCTTAAA+AGG + tig0015200:14077-14096 Msa1355860:intron 20.0%
!!! TGAATCAAATTTTGATTTTC+TGG + tig0015200:14208-14227 Msa1355860:intron 20.0%
!!! GAATCAAATTTTGATTTTCT+GGG + tig0015200:14209-14228 Msa1355860:intron 20.0%
!! CTGTTAATAAATATCTAGAA+AGG + tig0015200:14591-14610 Msa1355860:intron 20.0%
!! GTTAATAAATATCTAGAAAG+GGG + tig0015200:14593-14612 Msa1355860:intron 20.0%
!! TACTATTGTATTATGGTTAA+TGG - tig0015200:14697-14716 None:intergenic 20.0%
!!! TTTAAAATGTCATGTATAGT+TGG + tig0015200:14939-14958 Msa1355860:intron 20.0%
!! TACTAAATCATTCATGTAAT+GGG - tig0015200:15005-15024 None:intergenic 20.0%
!! TGGTAAAAATGTAAAAAAGT+TGG + tig0015200:15635-15654 Msa1355860:CDS 20.0%
!! TATTGATCAATTCTTTAGTA+TGG + tig0015200:16103-16122 Msa1355860:intron 20.0%
!!! TAAATTATATGTTTTCTTGC+AGG + tig0015200:16168-16187 Msa1355860:intron 20.0%
!!! TTCTAAAAATATCTTTCGAT+TGG - tig0015200:17053-17072 None:intergenic 20.0%
!! TAGAACATTAATCAATAACT+TGG + tig0015200:17128-17147 Msa1355860:three_prime_UTR 20.0%
! CAAATGATATTTATGGTTAC+TGG - tig0015200:14174-14193 None:intergenic 25.0%
! ACAGCTTCAAATGATATTTA+TGG - tig0015200:14181-14200 None:intergenic 25.0%
! AAGGCAATACTATTGTATTA+TGG - tig0015200:14704-14723 None:intergenic 25.0%
!! ATAGCGAAGGTTTAAAATAT+CGG - tig0015200:14861-14880 None:intergenic 25.0%
! ACTAAATCATTCATGTAATG+GGG - tig0015200:15004-15023 None:intergenic 25.0%
! CTACTAAATCATTCATGTAA+TGG - tig0015200:15006-15025 None:intergenic 25.0%
!!! TTTTTCAACAAAAACTCTCA+AGG + tig0015200:15165-15184 Msa1355860:CDS 25.0%
!!! AAAACAGTAGTAGTTTTGAT+AGG + tig0015200:15373-15392 Msa1355860:CDS 25.0%
! TACTAACATGGACATTAATT+GGG - tig0015200:15680-15699 None:intergenic 25.0%
!!! AACTTTTTTCACTACTAACA+TGG - tig0015200:15692-15711 None:intergenic 25.0%
!!! TTTGAAGTTTTTCAAGTTGA+AGG + tig0015200:15710-15729 Msa1355860:CDS 25.0%
! CAATACATAGATGATAAATG+AGG - tig0015200:16088-16107 None:intergenic 25.0%
! CCATCAATAAGTTTGATAAA+TGG - tig0015200:16356-16375 None:intergenic 25.0%
! CCATTTATCAAACTTATTGA+TGG + tig0015200:16353-16372 Msa1355860:CDS 25.0%
! GGATTTCTTGATGAAAAATA+GGG - tig0015200:16498-16517 None:intergenic 25.0%
! TGGATTTCTTGATGAAAAAT+AGG - tig0015200:16499-16518 None:intergenic 25.0%
TGGTTAACCAAAAATGTGAA+TGG + tig0015200:13959-13978 Msa1355860:CDS 30.0%
! ACTCATCTTAAATTTGGAAC+TGG + tig0015200:14247-14266 Msa1355860:intron 30.0%
CAAAACTTACATCAACATCA+GGG - tig0015200:14348-14367 None:intergenic 30.0%
TCAAAACTTACATCAACATC+AGG - tig0015200:14349-14368 None:intergenic 30.0%
TTTGTAGCAGCTATTGTAAA+AGG + tig0015200:14395-14414 Msa1355860:intron 30.0%
!!! TTAAACCCTTTTTAAAGCCT+CGG + tig0015200:14469-14488 Msa1355860:intron 30.0%
ACTACTTCAGTAACTTAGAA+AGG - tig0015200:14649-14668 None:intergenic 30.0%
! ATTTAGTAGCATAGCATTGA+TGG + tig0015200:15017-15036 Msa1355860:intron 30.0%
! TTGTCAGCCTAATCAATTTT+TGG + tig0015200:15203-15222 Msa1355860:CDS 30.0%
ACAGCATCCAAAAATTGATT+AGG - tig0015200:15213-15232 None:intergenic 30.0%
!! ACAGGTTTTATATTCGAACA+AGG + tig0015200:15233-15252 Msa1355860:CDS 30.0%
! AAGCCTTCAAATTTTGCATT+TGG + tig0015200:15498-15517 Msa1355860:CDS 30.0%
TCACCAAATGCAAAATTTGA+AGG - tig0015200:15504-15523 None:intergenic 30.0%
ACTAACATGGACATTAATTG+GGG - tig0015200:15679-15698 None:intergenic 30.0%
CTACTAACATGGACATTAAT+TGG - tig0015200:15681-15700 None:intergenic 30.0%
AAAAATCAAAGATTTGCCTG+TGG + tig0015200:15896-15915 Msa1355860:CDS 30.0%
TTGCAACTCATTACTAAAAG+TGG - tig0015200:15922-15941 None:intergenic 30.0%
! AGTAATGAGTTGCAAGTTTT+TGG + tig0015200:15927-15946 Msa1355860:CDS 30.0%
ATAATGTGCATGCAAATTGT+CGG - tig0015200:15988-16007 None:intergenic 30.0%
ATTCTTTAGTATGGTCTGAA+AGG + tig0015200:16112-16131 Msa1355860:intron 30.0%
ATGTTATAAGGTCTTCAAGA+TGG - tig0015200:16242-16261 None:intergenic 30.0%
TCCAATGAACAACAAATCAA+AGG + tig0015200:16272-16291 Msa1355860:CDS 30.0%
!! TCCTTTGATTTGTTGTTCAT+TGG - tig0015200:16276-16295 None:intergenic 30.0%
TTTGATAAATGGCTCTTCAT+AGG - tig0015200:16345-16364 None:intergenic 30.0%
GTATATCATCGAATGTTTCA+TGG + tig0015200:16446-16465 Msa1355860:CDS 30.0%
TGTTGTAATGTTATTGGTGA+TGG - tig0015200:16600-16619 None:intergenic 30.0%
ACAAGCTGTTGTAATGTTAT+TGG - tig0015200:16606-16625 None:intergenic 30.0%
!! ATTACAACAGCTTGTTGAAA+GGG + tig0015200:16611-16630 Msa1355860:CDS 30.0%
!!! GAAAAATGTTTTGGAAACAC+TGG + tig0015200:16701-16720 Msa1355860:CDS 30.0%
AATCATAAATTTGATCACCG+TGG + tig0015200:16794-16813 Msa1355860:three_prime_UTR 30.0%
ATCATAAATTTGATCACCGT+GGG + tig0015200:16795-16814 Msa1355860:three_prime_UTR 30.0%
ACCTAAGACAAATGACTTAA+TGG - tig0015200:16851-16870 None:intergenic 30.0%
!! CATTCTATTTCTATCTTCCA+TGG - tig0015200:16875-16894 None:intergenic 30.0%
ATTATTGAGAGTGATGCATA+TGG + tig0015200:17013-17032 Msa1355860:three_prime_UTR 30.0%
!!! TCACATTTTTGGTTAACCAG+AGG - tig0015200:13958-13977 None:intergenic 35.0%
! ACATTCGCCATTCACATTTT+TGG - tig0015200:13969-13988 None:intergenic 35.0%
AAATGTGAATGGCGAATGTT+TGG + tig0015200:13970-13989 Msa1355860:CDS 35.0%
TGGAATCTTTAATCTTCGTG+AGG + tig0015200:13990-14009 Msa1355860:CDS 35.0%
TTTATCCAACTGCCTACTAT+TGG - tig0015200:14040-14059 None:intergenic 35.0%
AAAAGAAGAACTCTTACCAC+TGG - tig0015200:14067-14086 None:intergenic 35.0%
TAGACTTTCAGTGCATACAA+TGG - tig0015200:14142-14161 None:intergenic 35.0%
TCATACATGCTTGTGATTTC+AGG - tig0015200:14446-14465 None:intergenic 35.0%
AATAGTATTGCCTTGCTTTG+AGG + tig0015200:14710-14729 Msa1355860:intron 35.0%
!! ATGAAACTAGTTGATAGCGA+AGG - tig0015200:14874-14893 None:intergenic 35.0%
ACTATAACCTCTTCTTCTTC+TGG - tig0015200:15067-15086 None:intergenic 35.0%
AAAAACTCTCAAGGCAAAGA+TGG + tig0015200:15174-15193 Msa1355860:CDS 35.0%
!! TCAATTTTTGGATGCTGTAC+AGG + tig0015200:15215-15234 Msa1355860:CDS 35.0%
! TGTTTTACCAACAGAGAGTT+AGG - tig0015200:15285-15304 None:intergenic 35.0%
CAAGTGAAAGCAGAACAAAA+TGG + tig0015200:15327-15346 Msa1355860:CDS 35.0%
TAAGACATGTCATGAGAGTA+AGG + tig0015200:15538-15557 Msa1355860:CDS 35.0%
GCAAAATAAATTGACCGTGA+AGG + tig0015200:15773-15792 Msa1355860:CDS 35.0%
GAGATAAAACTTTCACACCT+TGG - tig0015200:15800-15819 None:intergenic 35.0%
ATCTCATAAAAAGCAGCAGA+TGG + tig0015200:15815-15834 Msa1355860:CDS 35.0%
! TCAAAGCACTTCATAGAGAT+GGG + tig0015200:15841-15860 Msa1355860:CDS 35.0%
GCACATTATGATATTCCTAG+AGG + tig0015200:15999-16018 Msa1355860:CDS 35.0%
ATATAATGAGGCATACCTCT+AGG - tig0015200:16017-16036 None:intergenic 35.0%
AGACCTTATAACATCCTCTT+TGG + tig0015200:16248-16267 Msa1355860:CDS 35.0%
GATCCAAAGAGGATGTTATA+AGG - tig0015200:16254-16273 None:intergenic 35.0%
!! TCCACTTTTGATGAAGTGAA+TGG + tig0015200:16384-16403 Msa1355860:CDS 35.0%
TCCATTCACTTCATCAAAAG+TGG - tig0015200:16388-16407 None:intergenic 35.0%
AGATGGTACTGTCAAAAAGT+TGG - tig0015200:16419-16438 None:intergenic 35.0%
GATGATATACTCATGCAAGA+TGG - tig0015200:16436-16455 None:intergenic 35.0%
AGGGTGAAAAATCACTATTC+TGG - tig0015200:16479-16498 None:intergenic 35.0%
! ATGTGTTGTGAGGAAAGTTT+TGG + tig0015200:16530-16549 Msa1355860:CDS 35.0%
!! ATGTTATTGGTGATGGATGA+GGG - tig0015200:16593-16612 None:intergenic 35.0%
!! AATGTTATTGGTGATGGATG+AGG - tig0015200:16594-16613 None:intergenic 35.0%
!! CATTACAACAGCTTGTTGAA+AGG + tig0015200:16610-16629 Msa1355860:CDS 35.0%
CAATTTCTTCTGCATCAACA+TGG - tig0015200:16668-16687 None:intergenic 35.0%
TGATGCAGAAGAAATTGCAA+TGG + tig0015200:16671-16690 Msa1355860:CDS 35.0%
!!! TGTTTTGGAAACACTGGTTT+TGG + tig0015200:16707-16726 Msa1355860:CDS 35.0%
GCCATTAAGTCATTTGTCTT+AGG + tig0015200:16847-16866 Msa1355860:three_prime_UTR 35.0%
ATCTTTCGATTGGAGAAAGA+GGG - tig0015200:17043-17062 None:intergenic 35.0%
TATCTTTCGATTGGAGAAAG+AGG - tig0015200:17044-17063 None:intergenic 35.0%
!!! CATTTTTGGTTAACCAGAGG+AGG - tig0015200:13955-13974 None:intergenic 40.0%
TAATCTTCGTGAGGCTCATT+CGG + tig0015200:13999-14018 Msa1355860:CDS 40.0%
! GAAGATCGGTTTCCAATAGT+AGG + tig0015200:14025-14044 Msa1355860:CDS 40.0%
AAGCACATCTGAACCAATTC+TGG - tig0015200:14305-14324 None:intergenic 40.0%
!! CTAGTCCGAGGCTTTAAAAA+GGG - tig0015200:14477-14496 None:intergenic 40.0%
!! ACTAGTCCGAGGCTTTAAAA+AGG - tig0015200:14478-14497 None:intergenic 40.0%
!!! TTTTTAAAGCCTCGGACTAG+TGG + tig0015200:14477-14496 Msa1355860:intron 40.0%
AGAAAGGGGAAAGACTTTGA+AGG + tig0015200:14607-14626 Msa1355860:intron 40.0%
ATCACTAGATCCTCAAAGCA+AGG - tig0015200:14723-14742 None:intergenic 40.0%
! CTTTGAGGATCTAGTGATCA+AGG + tig0015200:14725-14744 Msa1355860:intron 40.0%
ACATAAAACTCGACATGACG+TGG - tig0015200:14770-14789 None:intergenic 40.0%
ATCGGTCATAGTAACTGTTG+TGG - tig0015200:14843-14862 None:intergenic 40.0%
TTGGCAAGATGCAGCAAAAA+TGG + tig0015200:14958-14977 Msa1355860:intron 40.0%
! TCATTCATGTAATGGGGTGA+GGG - tig0015200:14998-15017 None:intergenic 40.0%
! ATCATTCATGTAATGGGGTG+AGG - tig0015200:14999-15018 None:intergenic 40.0%
!!! GATGGAAGAATTTTGACTGC+AGG + tig0015200:15035-15054 Msa1355860:intron 40.0%
! TAGTTGTAAGAGTGTACGTG+TGG + tig0015200:15083-15102 Msa1355860:CDS 40.0%
GAATGATCGGATAGCAGATT+TGG + tig0015200:15107-15126 Msa1355860:CDS 40.0%
GAACTGCTGGGAAATTTACT+TGG - tig0015200:15600-15619 None:intergenic 40.0%
! CATCTCTATGAAGTGCTTTG+AGG - tig0015200:15842-15861 None:intergenic 40.0%
! CTCAAAGCACTTCATAGAGA+TGG + tig0015200:15840-15859 Msa1355860:CDS 40.0%
! CAAAGCACTTCATAGAGATG+GGG + tig0015200:15842-15861 Msa1355860:CDS 40.0%
TCATTACTAAAAGTGGCCAC+AGG - tig0015200:15915-15934 None:intergenic 40.0%
! TGTTTTCTTGCAGGAACAGA+TGG + tig0015200:16177-16196 Msa1355860:intron 40.0%
! GTTTTCTTGCAGGAACAGAT+GGG + tig0015200:16178-16197 Msa1355860:intron 40.0%
GTTGTTCATTGGATCCAAAG+AGG - tig0015200:16265-16284 None:intergenic 40.0%
ACAACACATGCTTGGAAGTT+TGG - tig0015200:16519-16538 None:intergenic 40.0%
TGCAGAAGAAATTGCAATGG+AGG + tig0015200:16674-16693 Msa1355860:CDS 40.0%
AGAAGAAATTGCAATGGAGG+TGG + tig0015200:16677-16696 Msa1355860:CDS 40.0%
! GGAGGTGGAGAAAAATGTTT+TGG + tig0015200:16692-16711 Msa1355860:CDS 40.0%
CAAATGACTTAATGGCCATG+CGG - tig0015200:16843-16862 None:intergenic 40.0%
GTCATTTGTCTTAGGTTCCA+TGG + tig0015200:16855-16874 Msa1355860:three_prime_UTR 40.0%
GGTTTCCAATAGTAGGCAGT+TGG + tig0015200:14032-14051 Msa1355860:CDS 45.0%
CAGTTGGATAAACACACCAG+TGG + tig0015200:14048-14067 Msa1355860:CDS 45.0%
!!! GGTGATTTTTTCCAAGCTGC+AGG + tig0015200:14268-14287 Msa1355860:intron 45.0%
! TTTTTCCAAGCTGCAGGCAA+TGG + tig0015200:14274-14293 Msa1355860:intron 45.0%
! TTTTCCAAGCTGCAGGCAAT+GGG + tig0015200:14275-14294 Msa1355860:intron 45.0%
GGCAATGGGAAATCCAGAAT+TGG + tig0015200:14289-14308 Msa1355860:intron 45.0%
TTACCAAAACCACTAGTCCG+AGG - tig0015200:14489-14508 None:intergenic 45.0%
! CATTCATGTAATGGGGTGAG+GGG - tig0015200:14997-15016 None:intergenic 45.0%
GTATGCTCCAGAAGAAGAAG+AGG + tig0015200:15057-15076 Msa1355860:CDS 45.0%
GTGTACGTGTGGAGAATGAT+CGG + tig0015200:15094-15113 Msa1355860:CDS 45.0%
GCAAGATCCTAACTCTCTGT+TGG + tig0015200:15275-15294 Msa1355860:CDS 45.0%
AGGAGAAAAGAACAGCAGTG+CGG + tig0015200:15558-15577 Msa1355860:CDS 45.0%
TAAATTTCCCAGCAGTTCGC+AGG + tig0015200:15602-15621 Msa1355860:CDS 45.0%
AAATTGACCGTGAAGGACCA+AGG + tig0015200:15780-15799 Msa1355860:CDS 45.0%
TTTCACACCTTGGTCCTTCA+CGG - tig0015200:15790-15809 None:intergenic 45.0%
ACTTCCAAGCATGTGTTGTG+AGG + tig0015200:16520-16539 Msa1355860:CDS 45.0%
CTTTCCTCACAACACATGCT+TGG - tig0015200:16527-16546 None:intergenic 45.0%
!! ACAGCTTGTTGAAAGGGACT+TGG + tig0015200:16617-16636 Msa1355860:CDS 45.0%
AGTCATCCATGATTCACGTC+TGG - tig0015200:16643-16662 None:intergenic 45.0%
GGCTCATTCGGATGGAAGAT+CGG + tig0015200:14011-14030 Msa1355860:CDS 50.0%
ATTTCCCATTGCCTGCAGCT+TGG - tig0015200:14282-14301 None:intergenic 50.0%
!!! AAGCCTCGGACTAGTGGTTT+TGG + tig0015200:14483-14502 Msa1355860:intron 50.0%
CACTTTGCTGACACTAGCTC+TGG + tig0015200:15459-15478 Msa1355860:CDS 50.0%
GGAGAAAAGAACAGCAGTGC+GGG + tig0015200:15559-15578 Msa1355860:CDS 50.0%
AGTTCGCAGGACTTGGAAGA+TGG + tig0015200:15615-15634 Msa1355860:CDS 50.0%
ACTTGGCCAGACGTGAATCA+TGG + tig0015200:16634-16653 Msa1355860:CDS 50.0%
GGACAGAAGATCTCCTCCTC+TGG + tig0015200:13939-13958 Msa1355860:CDS 55.0%
CTTCGTGAGGCTCATTCGGA+TGG + tig0015200:14003-14022 Msa1355860:CDS 55.0%
GTGATCAAGGTCTGCGACCA+CGG + tig0015200:14738-14757 Msa1355860:intron 55.0%
ACATGACGTGGACCAAACCG+TGG - tig0015200:14758-14777 None:intergenic 55.0%
CCTCAATCGTGGTCGTGTTG+CGG - tig0015200:14801-14820 None:intergenic 55.0%
GTGGTCAAATGAGCCCGATG+CGG - tig0015200:14824-14843 None:intergenic 55.0%
! ATGTAATGGGGTGAGGGGAG+TGG - tig0015200:14992-15011 None:intergenic 55.0%
GCAGTGCGGGACAACTGATT+CGG + tig0015200:15572-15591 Msa1355860:CDS 55.0%
TCCAAGTCCTGCGAACTGCT+GGG - tig0015200:15612-15631 None:intergenic 55.0%
TTCCAAGTCCTGCGAACTGC+TGG - tig0015200:15613-15632 None:intergenic 55.0%
TCACCGTGGGTAGTTGCTCA+TGG + tig0015200:16808-16827 Msa1355860:three_prime_UTR 55.0%
CCACCATGAGCAACTACCCA+CGG - tig0015200:16814-16833 None:intergenic 55.0%
TGGGTAGTTGCTCATGGTGG+TGG + tig0015200:16814-16833 Msa1355860:three_prime_UTR 55.0%
CAAGGTCTGCGACCACGGTT+TGG + tig0015200:14743-14762 Msa1355860:intron 60.0%
CCGCAACACGACCACGATTG+AGG + tig0015200:14798-14817 Msa1355860:intron 60.0%
GACCACGATTGAGGCCGCAT+CGG + tig0015200:14807-14826 Msa1355860:intron 60.0%
ACCACGATTGAGGCCGCATC+GGG + tig0015200:14808-14827 Msa1355860:intron 60.0%
TCCCAGCAGTTCGCAGGACT+TGG + tig0015200:15608-15627 Msa1355860:CDS 60.0%
CCGTGGGTAGTTGCTCATGG+TGG + tig0015200:16811-16830 Msa1355860:three_prime_UTR 60.0%
!! TCATGGTGGTGGAGACCGCA+TGG + tig0015200:16825-16844 Msa1355860:three_prime_UTR 60.0%
GCCCGATGCGGCCTCAATCG+TGG - tig0015200:14812-14831 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0015200 gene 13889 17175 13889 ID=Msa1355860;Name=Msa1355860
tig0015200 mRNA 13889 17175 13889 ID=Msa1355860-mRNA-1;Parent=Msa1355860;Name=Msa1355860-mRNA-1;_AED=0.00;_eAED=0.00;_QI=48|1|1|1|1|1|4|417|577
tig0015200 exon 13889 14069 13889 ID=Msa1355860-mRNA-1:exon:9637;Parent=Msa1355860-mRNA-1
tig0015200 exon 14290 14357 14290 ID=Msa1355860-mRNA-1:exon:9638;Parent=Msa1355860-mRNA-1
tig0015200 exon 15057 16020 15057 ID=Msa1355860-mRNA-1:exon:9639;Parent=Msa1355860-mRNA-1
tig0015200 exon 16190 17175 16190 ID=Msa1355860-mRNA-1:exon:9640;Parent=Msa1355860-mRNA-1
tig0015200 five_prime_UTR 13889 13936 13889 ID=Msa1355860-mRNA-1:five_prime_utr;Parent=Msa1355860-mRNA-1
tig0015200 CDS 13937 14069 13937 ID=Msa1355860-mRNA-1:cds;Parent=Msa1355860-mRNA-1
tig0015200 CDS 14290 14357 14290 ID=Msa1355860-mRNA-1:cds;Parent=Msa1355860-mRNA-1
tig0015200 CDS 15057 16020 15057 ID=Msa1355860-mRNA-1:cds;Parent=Msa1355860-mRNA-1
tig0015200 CDS 16190 16758 16190 ID=Msa1355860-mRNA-1:cds;Parent=Msa1355860-mRNA-1
tig0015200 three_prime_UTR 16759 17175 16759 ID=Msa1355860-mRNA-1:three_prime_utr;Parent=Msa1355860-mRNA-1
Gene Sequence

>Msa1355860

ATGGACAGAAGATCTCCTCCTCTGGTTAACCAAAAATGTGAATGGCGAATGTTTGGAATCTTTAATCTTCGTGAGGCTCATTCGGATGGAAGATCGGTTTCCAATAGTAGGCAGTTGGATAAACACACCAGTGGCAATGGGAAATCCAGAATTGGTTCAGATGTGCTTAGCACAGTTGATGAAAAGTACCCTGATGTTGATGTATGCTCCAGAAGAAGAAGAGGTTATAGTTGTAAGAGTGTACGTGTGGAGAATGATCGGATAGCAGATTTGGAAAATGAAGTAACAAAAATGATTGTTAATCAGAGATTTTTCAACAAAAACTCTCAAGGCAAAGATGGTGCAGATTGTCAGCCTAATCAATTTTTGGATGCTGTACAGGTTTTATATTCGAACAAGGAACTTTTCACAAAACTTCTGCAAGATCCTAACTCTCTGTTGGTAAAACAGATTCATGACATACAGAAAACTCAAGTGAAAGCAGAACAAAATGGAGTAATAAGATTGAATAAAGCTCAAAACAGTAGTAGTTTTGATAGGTTTAATTCGAGTTCAAATTGTGAGTCTCAGTCCTCTAAAAAAATAGTTACAAATAATGCACAACACTTTGCTGACACTAGCTCTGGCAATGCTCAAAATATTAAGCCTTCAAATTTTGCATTTGGTGAAATAAAGAGAAAGTTAAGACATGTCATGAGAGTAAGGAGAAAAGAACAGCAGTGCGGGACAACTGATTCGGCGCCAAGTAAATTTCCCAGCAGTTCGCAGGACTTGGAAGATGGTAAAAATGTAAAAAAGTTGGACACTTCTGAAAGAAATTCCCCAATTAATGTCCATGTTAGTAGTGAAAAAAGTTTGAAGTTTTTCAAGTTGAAGGATTCTGAGTCAAGTATGAGACAAGAAGAAGTTGCTTCTGAGCAAAATAAATTGACCGTGAAGGACCAAGGTGTGAAAGTTTTATCTCATAAAAAGCAGCAGATGGTCCTCAAAGCACTTCATAGAGATGGGGAAAGTTGCTCTTATAGTAGTTCTTCAGCTCAAAAAATCAAAGATTTGCCTGTGGCCACTTTTAGTAATGAGTTGCAAGTTTTTGGTGCTGCAGATATTAGTGTCAATAAGAGTCTTTCTGCCGACAATTTGCATGCACATTATGATATTCCTAGAGGAACAGATGGGTCACTAGTACAAGTTGATTACGATAGATTTGAAGAGAACCATCTTGAAGACCTTATAACATCCTCTTTGGATCCAATGAACAACAAATCAAAGGATATCATAAGTGAAGTTCTGCAGACTTTCAGCTTGAAATGTGATGAACCTATGAAGAGCCATTTATCAAACTTATTGATGGATTCTTCATCCACTTTTGATGAAGTGAATGGATTGACTGACCAACTTTTTGACAGTACCATCTTGCATGAGTATATCATCGAATGTTTCATGGAGTTATACCAGAATAGTGATTTTTCACCCTATTTTTCATCAAGAAATCCAAACTTCCAAGCATGTGTTGTGAGGAAAGTTTTGGTTAGACAGATTAATGAACTTGTTAAACTTCACTTTTTCCCTCATCCATCACCAATAACATTACAACAGCTTGTTGAAAGGGACTTGGCCAGACGTGAATCATGGATGACTATCCATGTTGATGCAGAAGAAATTGCAATGGAGGTGGAGAAAAATGTTTTGGAAACACTGGTTTTGGAAATCGTGTCTGAGATGACTATATCATAG

Protein sequence

>Msa1355860

MDRRSPPLVNQKCEWRMFGIFNLREAHSDGRSVSNSRQLDKHTSGNGKSRIGSDVLSTVDEKYPDVDVCSRRRRGYSCKSVRVENDRIADLENEVTKMIVNQRFFNKNSQGKDGADCQPNQFLDAVQVLYSNKELFTKLLQDPNSLLVKQIHDIQKTQVKAEQNGVIRLNKAQNSSSFDRFNSSSNCESQSSKKIVTNNAQHFADTSSGNAQNIKPSNFAFGEIKRKLRHVMRVRRKEQQCGTTDSAPSKFPSSSQDLEDGKNVKKLDTSERNSPINVHVSSEKSLKFFKLKDSESSMRQEEVASEQNKLTVKDQGVKVLSHKKQQMVLKALHRDGESCSYSSSSAQKIKDLPVATFSNELQVFGAADISVNKSLSADNLHAHYDIPRGTDGSLVQVDYDRFEENHLEDLITSSLDPMNNKSKDIISEVLQTFSLKCDEPMKSHLSNLLMDSSSTFDEVNGLTDQLFDSTILHEYIIECFMELYQNSDFSPYFSSRNPNFQACVVRKVLVRQINELVKLHFFPHPSPITLQQLVERDLARRESWMTIHVDAEEIAMEVEKNVLETLVLEIVSEMTIS*