AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0731730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0731730 MtrunA17_Chr5g0426141 86.170 282 1 2 1 244 1 282 4.17e-174 480
Msa0731730 MtrunA17_Chr3g0115851 71.277 282 43 2 1 244 1 282 4.81e-144 404
Msa0731730 MtrunA17_Chr4g0050381 65.248 282 55 3 1 244 1 277 6.35e-128 363
Msa0731730 MtrunA17_Chr2g0279151 63.475 282 64 3 1 244 1 281 2.49e-120 344
Msa0731730 MtrunA17_Chr8g0360351 52.453 265 87 3 19 244 18 282 4.93e-85 254
Msa0731730 MtrunA17_Chr2g0317021 51.321 265 90 3 19 244 69 333 1.35e-82 250
Msa0731730 MtrunA17_Chr4g0051661 45.749 247 95 3 35 243 152 397 7.22e-62 199
Msa0731730 MtrunA17_Chr3g0136711 36.268 284 136 7 1 243 1 280 2.53e-44 150
Msa0731730 MtrunA17_Chr1g0150451 37.405 262 119 7 23 243 66 323 6.09e-44 150
Msa0731730 MtrunA17_Chr1g0212961 38.492 252 110 7 31 243 92 337 1.04e-41 145
Msa0731730 MtrunA17_Chr3g0126511 35.316 269 129 7 16 243 76 340 8.34e-36 130
Msa0731730 MtrunA17_Chr5g0430481 33.591 259 116 11 35 244 124 375 3.15e-29 113
Msa0731730 MtrunA17_Chr3g0144111 34.025 241 100 9 48 243 1 227 6.40e-27 104
Msa0731730 MtrunA17_Chr3g0105351 31.538 260 120 12 36 244 63 315 7.55e-24 97.4
Msa0731730 MtrunA17_Chr3g0105371 31.154 260 121 12 36 244 87 339 9.99e-24 97.4
Msa0731730 MtrunA17_Chr1g0194191 31.250 240 99 7 62 241 114 347 4.57e-23 96.3
Msa0731730 MtrunA17_Chr5g0407161 32.751 229 98 7 65 243 123 345 8.50e-22 92.8
Msa0731730 MtrunA17_Chr3g0138281 31.907 257 110 10 48 244 95 346 4.60e-21 90.9
Msa0731730 MtrunA17_Chr2g0293811 29.389 262 111 9 48 241 74 329 2.64e-20 88.6
Msa0731730 MtrunA17_Chr1g0166481 30.918 207 118 6 58 243 71 273 1.04e-18 82.8
Msa0731730 MtrunA17_Chr4g0065141 29.502 261 113 10 48 244 98 351 1.69e-18 83.6
Msa0731730 MtrunA17_Chr4g0070871 36.957 184 65 6 109 244 324 504 4.97e-17 79.7
Msa0731730 MtrunA17_Chr5g0435721 32.057 209 103 7 32 206 190 393 2.03e-16 78.2
Msa0731730 MtrunA17_Chr1g0150781 31.600 250 114 10 44 244 303 544 5.71e-16 76.6
Msa0731730 MtrunA17_Chr8g0389921 28.155 309 133 12 17 244 135 435 6.12e-16 76.6
Msa0731730 MtrunA17_Chr3g0112291 28.916 249 129 8 30 243 88 323 3.62e-15 73.9
Msa0731730 MtrunA17_Chr1g0187481 26.337 243 141 7 33 243 41 277 3.02e-14 70.5
Msa0731730 MtrunA17_Chr4g0001761 46.078 102 38 4 110 200 160 255 4.19e-14 70.9
Msa0731730 MtrunA17_Chr6g0483411 29.796 245 100 12 67 244 80 319 4.40e-13 67.8
Msa0731730 MtrunA17_Chr3g0136811 46.512 86 38 3 110 193 160 239 5.84e-13 67.4
Msa0731730 MtrunA17_Chr5g0396731 30.846 201 97 9 35 200 73 266 6.65e-13 67.4
Msa0731730 MtrunA17_Chr1g0158781 33.140 172 88 6 56 204 135 302 1.61e-12 66.2
Msa0731730 MtrunA17_Chr1g0150071 45.349 86 39 3 110 193 160 239 2.09e-12 65.9
Msa0731730 MtrunA17_Chr7g0272061 34.831 178 69 10 110 241 183 359 6.76e-12 64.3
Msa0731730 MtrunA17_Chr7g0263281 31.863 204 92 10 31 191 31 230 6.89e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0731730 AT1G34750.2 63.830 282 64 2 1 244 1 282 1.12e-125 358
Msa0731730 AT1G34750.1 63.830 282 64 2 1 244 1 282 1.12e-125 358
Msa0731730 AT1G34750.3 63.830 282 64 2 1 244 1 282 1.12e-125 358
Msa0731730 AT1G22280.1 64.539 282 61 3 1 244 1 281 4.04e-122 348
Msa0731730 AT1G22280.3 63.194 288 61 3 1 244 1 287 3.72e-121 347
Msa0731730 AT1G78200.1 55.439 285 84 5 1 244 1 283 1.78e-105 306
Msa0731730 AT1G78200.3 55.439 285 84 5 1 244 1 283 1.78e-105 306
Msa0731730 AT1G78200.2 55.439 285 84 5 1 244 1 283 1.78e-105 306
Msa0731730 AT1G34750.4 67.130 216 55 1 1 200 1 216 1.42e-100 293
Msa0731730 AT2G20630.1 53.640 261 82 3 23 244 19 279 1.79e-88 263
Msa0731730 AT1G78200.5 56.723 238 62 4 48 244 1 238 3.23e-87 259
Msa0731730 AT1G78200.4 56.723 238 62 4 48 244 1 238 3.23e-87 259
Msa0731730 AT4G28400.3 53.785 251 78 2 32 244 11 261 1.49e-86 258
Msa0731730 AT4G28400.1 52.453 265 87 3 19 244 19 283 1.69e-86 258
Msa0731730 AT2G20630.2 53.077 260 83 3 23 243 19 278 1.47e-85 256
Msa0731730 AT3G15260.2 52.593 270 89 3 14 244 20 289 2.10e-84 253
Msa0731730 AT3G15260.1 52.593 270 89 3 14 244 20 289 2.10e-84 253
Msa0731730 AT1G22280.2 65.054 186 48 2 1 170 1 185 1.25e-77 233
Msa0731730 AT4G28400.2 56.281 199 70 2 19 200 19 217 1.22e-69 214
Msa0731730 AT2G34740.1 46.185 249 92 5 35 243 88 334 4.34e-61 195
Msa0731730 AT2G34740.2 49.180 183 75 3 35 200 102 283 1.45e-51 171
Msa0731730 AT2G34740.3 49.180 183 75 3 35 200 84 265 1.50e-51 170
Msa0731730 AT5G10740.1 37.367 281 131 7 4 243 3 279 1.21e-46 159
Msa0731730 AT5G10740.2 37.367 281 131 7 4 243 3 279 1.21e-46 159
Msa0731730 AT5G24940.1 37.011 281 132 7 4 243 3 279 3.17e-45 157
Msa0731730 AT4G31750.1 38.168 262 117 7 23 243 22 279 5.53e-45 153
Msa0731730 AT4G31750.3 38.168 262 117 7 23 243 22 279 5.53e-45 153
Msa0731730 AT4G31750.2 38.168 262 117 7 23 243 22 279 5.79e-45 153
Msa0731730 AT5G53140.1 33.969 262 128 7 24 244 91 348 1.13e-37 136
Msa0731730 AT5G53140.2 33.969 262 128 7 24 244 91 348 1.13e-37 136
Msa0731730 AT1G43900.1 36.653 251 115 7 33 243 122 368 9.16e-37 133
Msa0731730 AT3G62260.3 33.884 242 95 8 62 243 23 259 5.06e-26 103
Msa0731730 AT3G62260.1 33.884 242 95 8 62 243 112 348 1.58e-25 103
Msa0731730 AT3G62260.2 33.884 242 95 8 62 243 113 349 1.63e-25 103
Msa0731730 AT2G40180.1 32.197 264 119 11 35 244 129 386 2.30e-24 100
Msa0731730 AT1G07160.1 32.794 247 110 9 48 243 135 376 2.75e-24 100
Msa0731730 AT2G33700.1 33.721 258 107 11 44 243 93 344 2.86e-24 100
Msa0731730 AT3G51470.2 32.800 250 107 11 48 243 41 283 6.41e-24 98.2
Msa0731730 AT3G51470.1 32.800 250 107 11 48 243 85 327 1.13e-23 98.2
Msa0731730 AT2G25620.1 33.977 259 100 11 48 241 102 354 2.31e-23 97.8
Msa0731730 AT2G25620.2 33.977 259 100 11 48 241 102 354 2.31e-23 97.8
Msa0731730 AT2G30020.1 33.077 260 118 12 35 244 140 393 3.80e-22 94.4
Msa0731730 AT3G17250.1 28.387 310 137 11 12 243 91 393 1.87e-18 84.0
Msa0731730 AT2G29380.1 36.000 175 69 6 110 244 190 361 4.70e-18 82.4
Msa0731730 AT1G48040.1 29.562 274 110 10 43 243 86 349 1.06e-17 81.6
Msa0731730 AT1G67820.2 30.804 224 107 6 48 228 97 315 3.47e-17 80.5
Msa0731730 AT5G57050.1 28.289 304 120 11 35 244 113 412 5.18e-17 80.1
Msa0731730 AT1G67820.1 30.804 224 107 6 48 228 133 351 5.76e-17 79.7
Msa0731730 AT5G57050.2 28.289 304 120 11 35 244 73 372 5.98e-17 79.7
Msa0731730 AT5G51760.2 35.676 185 66 6 110 244 201 382 7.03e-17 79.3
Msa0731730 AT5G51760.1 35.676 185 66 6 110 244 231 412 8.82e-17 79.3
Msa0731730 AT2G40860.4 28.179 291 155 9 6 244 263 551 1.85e-16 78.6
Msa0731730 AT2G40860.1 28.179 291 155 9 6 244 361 649 1.92e-16 78.6
Msa0731730 AT1G07430.1 32.212 208 95 10 34 200 120 322 1.92e-15 75.5
Msa0731730 AT5G59220.1 31.050 219 100 9 30 206 107 316 2.44e-15 75.1
Msa0731730 AT1G72770.4 34.444 180 70 6 110 244 326 502 3.63e-15 74.7
Msa0731730 AT1G72770.1 34.444 180 70 6 110 244 326 502 3.63e-15 74.7
Msa0731730 AT1G72770.3 34.444 180 70 6 110 244 326 502 3.63e-15 74.7
Msa0731730 AT3G23360.1 33.557 149 76 5 108 243 121 259 5.10e-14 70.1
Msa0731730 AT2G40860.2 27.698 278 147 9 6 231 361 636 1.11e-13 70.5
Msa0731730 AT3G16800.4 38.021 192 70 11 100 244 65 254 1.91e-12 65.5
Msa0731730 AT3G16800.6 38.021 192 70 11 100 244 65 254 1.91e-12 65.5
Msa0731730 AT3G05640.2 36.313 179 68 8 110 243 172 349 2.23e-12 66.2
Msa0731730 AT3G05640.1 36.313 179 68 8 110 243 172 349 2.23e-12 66.2
Msa0731730 AT3G05640.3 36.313 179 68 8 110 243 172 349 2.23e-12 66.2
Msa0731730 AT3G16800.2 38.342 193 68 12 100 244 160 349 3.57e-12 65.5
Msa0731730 AT3G16800.1 38.342 193 68 12 100 244 160 349 3.57e-12 65.5
Msa0731730 AT3G16800.3 38.342 193 68 12 100 244 160 349 3.57e-12 65.5
Msa0731730 AT3G11410.1 43.011 93 48 3 110 200 221 310 6.88e-12 65.1
Msa0731730 AT5G27930.1 34.831 178 68 9 110 241 177 352 1.83e-11 63.5
Msa0731730 AT5G27930.2 34.831 178 68 9 110 241 177 352 1.83e-11 63.5
Msa0731730 AT4G31860.3 45.238 84 38 3 110 191 160 237 2.28e-11 62.8
Msa0731730 AT4G31860.2 44.186 86 40 3 110 193 160 239 2.52e-11 62.4
Msa0731730 AT2G25070.1 29.944 177 76 7 110 244 160 330 2.68e-11 63.2
Msa0731730 AT2G25070.2 29.944 177 76 7 110 244 160 330 2.68e-11 63.2
Msa0731730 AT4G31860.1 44.186 86 40 3 110 193 160 239 3.05e-11 62.8

Find 69 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGTAATTTGTTAAAGAAAA+AGG 0.215171 5_1:+43160395 Msa0731730:three_prime_UTR
TCCTTGTACTTGCACAAAAT+TGG 0.219610 5_1:-43157991 None:intergenic
TCTTTCAAATAGTTCTGATT+TGG 0.235348 5_1:+43158495 Msa0731730:CDS
TTATTTCAAGTGTGAATATT+AGG 0.238324 5_1:+43160490 Msa0731730:three_prime_UTR
CTTTCAAATAGTTCTGATTT+GGG 0.264270 5_1:+43158496 Msa0731730:CDS
TCAGCATAGACACTTCAATT+TGG 0.277484 5_1:-43156684 None:intergenic
CGCAGGTTTCGCTTTGATCA+AGG 0.310527 5_1:+43156554 Msa0731730:five_prime_UTR
CTGGCTGTTGCTCGTGCATT+TGG 0.315037 5_1:+43159702 Msa0731730:CDS
GGCGATGTCCCTAGAGTAAA+TGG 0.335195 5_1:+43159675 Msa0731730:intron
TATAAAATGTGCCACCTTAC+CGG 0.344308 5_1:-43156476 None:intergenic
TTACATGGCATGCCAATTCA+TGG 0.350476 5_1:+43160311 Msa0731730:three_prime_UTR
AAGTGTCTATGCTGAGAATT+TGG 0.364552 5_1:+43156692 Msa0731730:five_prime_UTR
GCAAGTACAAGGAAAAGAAT+TGG 0.366641 5_1:+43158001 Msa0731730:CDS
TGCTTCAGCTGTTAATTGCT+TGG 0.366726 5_1:-43160164 None:intergenic
TCATCATGCAGCACCGGAAA+AGG 0.368195 5_1:+43157885 Msa0731730:CDS
TAATCAATGGTCAAATGTTA+TGG 0.372279 5_1:+43158551 Msa0731730:CDS
CATGAAGGGTCAATAAAGTA+TGG 0.376454 5_1:+43157915 Msa0731730:CDS
ATATATCTTGTGTTGTGGTT+AGG 0.380847 5_1:+43160209 Msa0731730:CDS
TGCTATTTACGATGGCCACT+TGG 0.387334 5_1:+43158031 Msa0731730:CDS
CGAGCGGTTCTTTCAAGAAA+AGG 0.395093 5_1:+43158595 Msa0731730:CDS
CGAGGCATCATTGAGAATAA+AGG 0.401779 5_1:+43158661 Msa0731730:CDS
AAGTTTATAACACTAAAATA+AGG 0.405782 5_1:+43160278 Msa0731730:three_prime_UTR
CTTGTGTTGTGGTTAGGTTT+AGG 0.413014 5_1:+43160215 Msa0731730:CDS
CAAGTACAAGGAAAAGAATT+GGG 0.420606 5_1:+43158002 Msa0731730:CDS
GATTGGCTCGCCCTTTCACT+AGG 0.421592 5_1:-43157944 None:intergenic
CCCTAGAGTAAATGGACAAC+TGG 0.433175 5_1:+43159683 Msa0731730:CDS
ATGATGCCTCGTTCTGTGTT+AGG 0.446979 5_1:-43158649 None:intergenic
GCTATTTACGATGGCCACTT+GGG 0.451919 5_1:+43158032 Msa0731730:CDS
TGATTGATACACTTCAAAAC+AGG 0.452716 5_1:+43160241 Msa0731730:three_prime_UTR
CACATCATATACTACATACT+TGG 0.460033 5_1:+43160344 Msa0731730:three_prime_UTR
GTAATCCTCCATCGGATGAT+TGG 0.469421 5_1:-43157961 None:intergenic
GAAACCTGCGACAGAAGAAA+AGG 0.478285 5_1:-43156541 None:intergenic
AATTGCTTGGCTGCTTTCAG+TGG 0.490672 5_1:-43160151 None:intergenic
CATCATGCAGCACCGGAAAA+GGG 0.498344 5_1:+43157886 Msa0731730:CDS
AATAGTTCTGATTTGGGGCG+TGG 0.501689 5_1:+43158502 Msa0731730:CDS
GCAGGTTTCGCTTTGATCAA+GGG 0.506013 5_1:+43156555 Msa0731730:five_prime_UTR
TAATTCTAATTGGACCGGTA+AGG 0.507446 5_1:+43156462 Msa0731730:five_prime_UTR
GCCAGTTGTCCATTTACTCT+AGG 0.508307 5_1:-43159684 None:intergenic
CTGATCGCAAATGAGACTTT+AGG 0.519194 5_1:-43159734 None:intergenic
AGCATATCTGAACACAGATC+AGG 0.521538 5_1:+43158468 Msa0731730:CDS
GGTTATATGCATCTAATAGC+TGG 0.532579 5_1:+43160555 Msa0731730:three_prime_UTR
TCATATACTACATACTTGGT+TGG 0.535402 5_1:+43160348 Msa0731730:three_prime_UTR
CTATTTACGATGGCCACTTG+GGG 0.537349 5_1:+43158033 Msa0731730:CDS
GTTACTGCAATATTAATCAA+TGG 0.538044 5_1:+43158538 Msa0731730:CDS
TATGGTTTCACCCTAGTGAA+AGG 0.538203 5_1:+43157933 Msa0731730:CDS
CCAGTTGTCCATTTACTCTA+GGG 0.544818 5_1:-43159683 None:intergenic
ATGGTTTCACCCTAGTGAAA+GGG 0.552190 5_1:+43157934 Msa0731730:CDS
CTATATGTAGATTGATTGAG+AGG 0.561346 5_1:+43160534 Msa0731730:three_prime_UTR
TTCTAATTGGACCGGTAAGG+TGG 0.573004 5_1:+43156465 Msa0731730:five_prime_UTR
GGTTTGTTTGCTATTTACGA+TGG 0.579056 5_1:+43158023 Msa0731730:CDS
TTTCAAATAGTTCTGATTTG+GGG 0.579147 5_1:+43158497 Msa0731730:CDS
TGTGATGAGAGAAACAGAAA+AGG 0.583644 5_1:-43156604 None:intergenic
ATTGGCTCGCCCTTTCACTA+GGG 0.585955 5_1:-43157943 None:intergenic
ACGCGTTCATCATGCAGCAC+CGG 0.596075 5_1:+43157879 Msa0731730:CDS
AGTTCTGATTTGGGGCGTGG+TGG 0.597508 5_1:+43158505 Msa0731730:CDS
GCAACGTGGTAATCCTCCAT+CGG 0.603187 5_1:-43157969 None:intergenic
ATATGCATCTAATAGCTGGT+TGG 0.605241 5_1:+43160559 Msa0731730:three_prime_UTR
TTAGGAATCTACATGAGAGA+AGG 0.605994 5_1:+43160508 Msa0731730:three_prime_UTR
ATGTTATGGACAGCTAATGT+CGG 0.606535 5_1:+43158565 Msa0731730:CDS
TCAGGTAATGGCAAATCAAG+AGG 0.609971 5_1:+43160099 Msa0731730:intron
TAAGGATACATATCTTTACA+TGG 0.618121 5_1:+43160296 Msa0731730:three_prime_UTR
AGATGATATATCTTGTGTTG+TGG 0.625754 5_1:+43160204 Msa0731730:CDS
TATTTACGATGGCCACTTGG+GGG 0.638259 5_1:+43158034 Msa0731730:CDS
GGCATCATTGAGAATAAAGG+CGG 0.642545 5_1:+43158664 Msa0731730:CDS
AGGGCGAGCCAATCATCCGA+TGG 0.643114 5_1:+43157953 Msa0731730:CDS
GCGAGCCAATCATCCGATGG+AGG 0.648560 5_1:+43157956 Msa0731730:CDS
CATGAGCCTAACACAGAACG+AGG 0.661928 5_1:+43158643 Msa0731730:CDS
CTTGCACAAAATTGGCAACG+TGG 0.667970 5_1:-43157983 None:intergenic
TAATGTCGGAGATTCACGAG+CGG 0.779182 5_1:+43158579 Msa0731730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAAAATTGTTAAACT+TGG - chr5_1:43156446-43156465 None:intergenic 10.0%
!!! ACAATTTTTTTAATTCTAAT+TGG + chr5_1:43156452-43156471 Msa0731730:five_prime_UTR 10.0%
!!! TATTTGAAATTATTAGTATA+TGG - chr5_1:43159296-43159315 None:intergenic 10.0%
!!! TTCTTTAAAAACAAAGATTA+TGG - chr5_1:43157700-43157719 None:intergenic 15.0%
!!! ATACTTTTGATTTTTATCAT+AGG + chr5_1:43158408-43158427 Msa0731730:intron 15.0%
!!! TACTTTTGATTTTTATCATA+GGG + chr5_1:43158409-43158428 Msa0731730:intron 15.0%
!! AAGTTTATAACACTAAAATA+AGG + chr5_1:43160278-43160297 Msa0731730:three_prime_UTR 15.0%
!!! TTTTTTAATTCTAATTGGAC+CGG + chr5_1:43156457-43156476 Msa0731730:five_prime_UTR 20.0%
!!! AAAAGCATAGAATATGTTTT+TGG - chr5_1:43156514-43156533 None:intergenic 20.0%
!!! TTTAAAGTCTTCTTTTTCTA+AGG + chr5_1:43156783-43156802 Msa0731730:CDS 20.0%
!! TCAAATCAATAACTAAAAAC+AGG - chr5_1:43156941-43156960 None:intergenic 20.0%
!!! TGTTTTTAGTTATTGATTTG+AGG + chr5_1:43156940-43156959 Msa0731730:intron 20.0%
!!! GTTTTTAGTTATTGATTTGA+GGG + chr5_1:43156941-43156960 Msa0731730:intron 20.0%
!!! TGTTTTTGATAAAACTGAAT+TGG - chr5_1:43157039-43157058 None:intergenic 20.0%
!! AAAATGTCAAAGATTAACTT+GGG - chr5_1:43157136-43157155 None:intergenic 20.0%
!! AAAAATGTCAAAGATTAACT+TGG - chr5_1:43157137-43157156 None:intergenic 20.0%
!!! ATCTTTGACATTTTTCATAT+TGG + chr5_1:43157142-43157161 Msa0731730:intron 20.0%
!!! TCTTTGACATTTTTCATATT+GGG + chr5_1:43157143-43157162 Msa0731730:intron 20.0%
!!! AAATGTCACATTTTTCATAT+TGG + chr5_1:43157173-43157192 Msa0731730:intron 20.0%
!!! AATGTCACATTTTTCATATT+GGG + chr5_1:43157174-43157193 Msa0731730:intron 20.0%
!! TAAATTACAAGAAATACCAA+GGG - chr5_1:43157390-43157409 None:intergenic 20.0%
!! ATAAATTACAAGAAATACCA+AGG - chr5_1:43157391-43157410 None:intergenic 20.0%
!! ATGCGAAAAATTAAAACAAA+AGG - chr5_1:43157503-43157522 None:intergenic 20.0%
!! TGAATAGTTTAATCTCTTAA+TGG + chr5_1:43157560-43157579 Msa0731730:intron 20.0%
!!! TATTGTTGTTGAAATAACTT+AGG + chr5_1:43157725-43157744 Msa0731730:intron 20.0%
!!! ACGAAACTATATTTTTTGTT+TGG + chr5_1:43158826-43158845 Msa0731730:intron 20.0%
!! TTAACATTTGAATTCAGTTA+TGG - chr5_1:43158871-43158890 None:intergenic 20.0%
!! CATTAGATATGATTAATGAT+AGG + chr5_1:43159030-43159049 Msa0731730:intron 20.0%
!! AAATTATTAGTATATGGACA+CGG - chr5_1:43159290-43159309 None:intergenic 20.0%
!!! CAGTGTAAATATTTTTTACA+CGG + chr5_1:43159468-43159487 Msa0731730:intron 20.0%
!!! TTCATTGTAGTTTCTTTTAA+AGG + chr5_1:43160031-43160050 Msa0731730:intron 20.0%
!!! AGTTTTGACTAAATTCATTT+AGG + chr5_1:43160375-43160394 Msa0731730:three_prime_UTR 20.0%
!!! AGGTAATTTGTTAAAGAAAA+AGG + chr5_1:43160395-43160414 Msa0731730:three_prime_UTR 20.0%
!!! TAATTTGTTAAAGAAAAAGG+AGG + chr5_1:43160398-43160417 Msa0731730:three_prime_UTR 20.0%
!!! AATTTGTTAAAGAAAAAGGA+GGG + chr5_1:43160399-43160418 Msa0731730:three_prime_UTR 20.0%
!!! TTATTTCAAGTGTGAATATT+AGG + chr5_1:43160490-43160509 Msa0731730:three_prime_UTR 20.0%
!!! GAATATGTTTTTGGTAACTT+AGG - chr5_1:43156505-43156524 None:intergenic 25.0%
!!! AAATTTCTGATTTTGAGAAG+TGG + chr5_1:43156646-43156665 Msa0731730:five_prime_UTR 25.0%
!!! AATTTCTGATTTTGAGAAGT+GGG + chr5_1:43156647-43156666 Msa0731730:five_prime_UTR 25.0%
! TTATCCATGAGAAAAAACAA+GGG - chr5_1:43156754-43156773 None:intergenic 25.0%
! TTTATCCATGAGAAAAAACA+AGG - chr5_1:43156755-43156774 None:intergenic 25.0%
!! TTCTTGTTTGTTGAATTTGA+AGG + chr5_1:43156839-43156858 Msa0731730:intron 25.0%
!!! AGGCAATTGAATTTTTTGTA+TGG + chr5_1:43156859-43156878 Msa0731730:intron 25.0%
!!! TTTTGTTTAAGGATGATGAT+TGG + chr5_1:43156886-43156905 Msa0731730:intron 25.0%
!! CTTTGACATTTTTCATATTG+GGG + chr5_1:43157144-43157163 Msa0731730:intron 25.0%
!! ATGTCACATTTTTCATATTG+GGG + chr5_1:43157175-43157194 Msa0731730:intron 25.0%
!!! ATTTGTGTTGATTTTTTGAC+AGG + chr5_1:43157211-43157230 Msa0731730:intron 25.0%
!!! TTTGTGTTGATTTTTTGACA+GGG + chr5_1:43157212-43157231 Msa0731730:intron 25.0%
! TGGGTCATTATATAATTGTT+AGG + chr5_1:43157242-43157261 Msa0731730:intron 25.0%
! GGGTCATTATATAATTGTTA+GGG + chr5_1:43157243-43157262 Msa0731730:intron 25.0%
! TCAATTGTCTTTGATTATGT+TGG + chr5_1:43157331-43157350 Msa0731730:intron 25.0%
! CAATTGTCTTTGATTATGTT+GGG + chr5_1:43157332-43157351 Msa0731730:intron 25.0%
! AAATTACAAGAAATACCAAG+GGG - chr5_1:43157389-43157408 None:intergenic 25.0%
! TTTATTGTGTTACATTTGCT+TGG + chr5_1:43157406-43157425 Msa0731730:intron 25.0%
!! TAATCCTTAATGTTCTGTTT+TGG + chr5_1:43157451-43157470 Msa0731730:intron 25.0%
! TAGATCTTAAAATACATACC+AGG - chr5_1:43157612-43157631 None:intergenic 25.0%
!!! GTTTTAGGTTTTTGACATTT+CGG + chr5_1:43157664-43157683 Msa0731730:intron 25.0%
!!! TTTTAGGTTTTTGACATTTC+GGG + chr5_1:43157665-43157684 Msa0731730:intron 25.0%
! AAAAACAAAGATTATGGTCA+TGG - chr5_1:43157694-43157713 None:intergenic 25.0%
!!! GTCACAAATCATTACTTTTT+CGG + chr5_1:43157780-43157799 Msa0731730:intron 25.0%
! AGAAAAATAAATCAGCTTGA+GGG - chr5_1:43157824-43157843 None:intergenic 25.0%
! AAGAAAAATAAATCAGCTTG+AGG - chr5_1:43157825-43157844 None:intergenic 25.0%
!! AGATTTTTCTGTAAGTATGA+AGG - chr5_1:43158068-43158087 None:intergenic 25.0%
!! TCTATTTTCCAACATTCTAA+AGG + chr5_1:43158085-43158104 Msa0731730:intron 25.0%
!!! TTAGAATTTTGATAAAGCAG+AGG + chr5_1:43158268-43158287 Msa0731730:intron 25.0%
!!! TCTTTCAAATAGTTCTGATT+TGG + chr5_1:43158495-43158514 Msa0731730:CDS 25.0%
!!! CTTTCAAATAGTTCTGATTT+GGG + chr5_1:43158496-43158515 Msa0731730:CDS 25.0%
!!! TTTCAAATAGTTCTGATTTG+GGG + chr5_1:43158497-43158516 Msa0731730:CDS 25.0%
! GTTACTGCAATATTAATCAA+TGG + chr5_1:43158538-43158557 Msa0731730:CDS 25.0%
! TAATCAATGGTCAAATGTTA+TGG + chr5_1:43158551-43158570 Msa0731730:CDS 25.0%
!!! TCAGATTCTCATTTTTTGTT+TGG + chr5_1:43158762-43158781 Msa0731730:intron 25.0%
!! TCATGTTGTTTAATGTATCA+TGG + chr5_1:43158899-43158918 Msa0731730:intron 25.0%
!!! TAAGTTGTTTCTTTGTTACA+AGG - chr5_1:43159380-43159399 None:intergenic 25.0%
! CGTGTAAAAAATATTTACAC+TGG - chr5_1:43159470-43159489 None:intergenic 25.0%
! CTAAAAATTAAGTGCATGTT+TGG + chr5_1:43159866-43159885 Msa0731730:intron 25.0%
! TAAGGATACATATCTTTACA+TGG + chr5_1:43160296-43160315 Msa0731730:three_prime_UTR 25.0%
!!! GTTTACTGATTAGATTTTGT+TGG + chr5_1:43160442-43160461 Msa0731730:three_prime_UTR 25.0%
!!! TGTATGGTGTGTTTTGTTTA+AGG + chr5_1:43156875-43156894 Msa0731730:intron 30.0%
AAAATTGTGAAGGACTGAAT+AGG - chr5_1:43157078-43157097 None:intergenic 30.0%
ATTCCATGTATAGTGTATCT+TGG + chr5_1:43157303-43157322 Msa0731730:intron 30.0%
ATACCAAGATACACTATACA+TGG - chr5_1:43157309-43157328 None:intergenic 30.0%
AATTACAAGAAATACCAAGG+GGG - chr5_1:43157388-43157407 None:intergenic 30.0%
CCAAAACATTCAGAAACATT+AGG - chr5_1:43157478-43157497 None:intergenic 30.0%
!! CCTAATGTTTCTGAATGTTT+TGG + chr5_1:43157475-43157494 Msa0731730:intron 30.0%
TCACCATGTAGTTTAAAAGT+CGG + chr5_1:43157632-43157651 Msa0731730:intron 30.0%
! TTCATGATTTTTCCCTTTTC+CGG - chr5_1:43157901-43157920 None:intergenic 30.0%
GAAAAGGGAAAAATCATGAA+GGG + chr5_1:43157901-43157920 Msa0731730:CDS 30.0%
CAAGTACAAGGAAAAGAATT+GGG + chr5_1:43158002-43158021 Msa0731730:CDS 30.0%
!! ATTTTCCAACATTCTAAAGG+AGG + chr5_1:43158088-43158107 Msa0731730:intron 30.0%
!! AAATACCTCCTTTAGAATGT+TGG - chr5_1:43158096-43158115 None:intergenic 30.0%
! ACAATTTCATGGACTGAATT+GGG - chr5_1:43158149-43158168 None:intergenic 30.0%
TTCAAAACAAGCAATCAGTT+TGG - chr5_1:43158233-43158252 None:intergenic 30.0%
! TTTTATCATAGGGTGCATTT+TGG + chr5_1:43158419-43158438 Msa0731730:intron 30.0%
! TTTATCATAGGGTGCATTTT+GGG + chr5_1:43158420-43158439 Msa0731730:intron 30.0%
!!! TTTTTAAGTACCTGGAATGT+TGG - chr5_1:43158698-43158717 None:intergenic 30.0%
!! AACTAAAGCGTTTTTCTACT+AGG - chr5_1:43159087-43159106 None:intergenic 30.0%
TAGTAGAAAAACGCTTTAGT+TGG + chr5_1:43159086-43159105 Msa0731730:intron 30.0%
TTTATGGTTGTGGTTTCAAT+TGG + chr5_1:43159140-43159159 Msa0731730:intron 30.0%
TTCTTCTCAACCTAATTTCA+TGG - chr5_1:43159177-43159196 None:intergenic 30.0%
AAAAAACAACTAAAGCTCGT+TGG - chr5_1:43159333-43159352 None:intergenic 30.0%
!!! AATCGTTTTGTTTACATCGA+TGG + chr5_1:43159571-43159590 Msa0731730:intron 30.0%
TTTCAAGACCACAATAACAT+TGG + chr5_1:43159630-43159649 Msa0731730:intron 30.0%
ATAACATTGGCAATGATCTT+TGG + chr5_1:43159643-43159662 Msa0731730:intron 30.0%
AATGATCTTTGGTATTTGTC+AGG + chr5_1:43159654-43159673 Msa0731730:intron 30.0%
TACATCAGTACTATGTACAT+CGG - chr5_1:43159763-43159782 None:intergenic 30.0%
TTTCTAATTCTTGCAAGTGA+TGG + chr5_1:43159798-43159817 Msa0731730:intron 30.0%
TAGTCAAGTAACAAGTGTTT+GGG - chr5_1:43159849-43159868 None:intergenic 30.0%
TTAGTCAAGTAACAAGTGTT+TGG - chr5_1:43159850-43159869 None:intergenic 30.0%
!! AATCATGTTGTCACTGATTT+CGG + chr5_1:43159909-43159928 Msa0731730:intron 30.0%
! CTAGTACATGTTTGGAATTA+CGG - chr5_1:43159995-43160014 None:intergenic 30.0%
AATATGCTCTAGTACATGTT+TGG - chr5_1:43160003-43160022 None:intergenic 30.0%
AACATGTACTAGAGCATATT+TGG + chr5_1:43160003-43160022 Msa0731730:intron 30.0%
TGTTTGCATATGTGAAAATC+AGG + chr5_1:43160081-43160100 Msa0731730:intron 30.0%
CATATGTGAAAATCAGGTAA+TGG + chr5_1:43160087-43160106 Msa0731730:intron 30.0%
AGATGATATATCTTGTGTTG+TGG + chr5_1:43160204-43160223 Msa0731730:CDS 30.0%
ATATATCTTGTGTTGTGGTT+AGG + chr5_1:43160209-43160228 Msa0731730:CDS 30.0%
TGATTGATACACTTCAAAAC+AGG + chr5_1:43160241-43160260 Msa0731730:three_prime_UTR 30.0%
CACATCATATACTACATACT+TGG + chr5_1:43160344-43160363 Msa0731730:three_prime_UTR 30.0%
TCATATACTACATACTTGGT+TGG + chr5_1:43160348-43160367 Msa0731730:three_prime_UTR 30.0%
CTATATGTAGATTGATTGAG+AGG + chr5_1:43160534-43160553 Msa0731730:three_prime_UTR 30.0%
TAATTCTAATTGGACCGGTA+AGG + chr5_1:43156462-43156481 Msa0731730:five_prime_UTR 35.0%
TATAAAATGTGCCACCTTAC+CGG - chr5_1:43156479-43156498 None:intergenic 35.0%
! GCTTTGATCAAGGGTTTTTA+GGG + chr5_1:43156564-43156583 Msa0731730:five_prime_UTR 35.0%
TGTGATGAGAGAAACAGAAA+AGG - chr5_1:43156607-43156626 None:intergenic 35.0%
TCAGCATAGACACTTCAATT+TGG - chr5_1:43156687-43156706 None:intergenic 35.0%
AAGTGTCTATGCTGAGAATT+TGG + chr5_1:43156692-43156711 Msa0731730:five_prime_UTR 35.0%
!!! TCAACCCTTGTTTTTTCTCA+TGG + chr5_1:43156747-43156766 Msa0731730:exon 35.0%
!!! TTTTTTGACAGGGACTGAAT+TGG + chr5_1:43157222-43157241 Msa0731730:intron 35.0%
! TTTTTGACAGGGACTGAATT+GGG + chr5_1:43157223-43157242 Msa0731730:intron 35.0%
ATAATTGTTAGGGACCGAAT+TGG + chr5_1:43157253-43157272 Msa0731730:intron 35.0%
TAATTGTTAGGGACCGAATT+GGG + chr5_1:43157254-43157273 Msa0731730:intron 35.0%
CTAAGAATGAAGACCCAATT+CGG - chr5_1:43157270-43157289 None:intergenic 35.0%
TGTCTTTGATTATGTTGGGA+AGG + chr5_1:43157336-43157355 Msa0731730:intron 35.0%
GTCTTTGATTATGTTGGGAA+GGG + chr5_1:43157337-43157356 Msa0731730:intron 35.0%
TCTTTGATTATGTTGGGAAG+GGG + chr5_1:43157338-43157357 Msa0731730:intron 35.0%
TTGTGTTACATTTGCTTGGT+TGG + chr5_1:43157410-43157429 Msa0731730:intron 35.0%
AGGACCAAAACAGAACATTA+AGG - chr5_1:43157458-43157477 None:intergenic 35.0%
TTACTGCTGTACAATTTACC+TGG + chr5_1:43157591-43157610 Msa0731730:intron 35.0%
! GCAATGCATTTGTTTCGTTT+TGG + chr5_1:43157753-43157772 Msa0731730:intron 35.0%
GGAAAAGGGAAAAATCATGA+AGG + chr5_1:43157900-43157919 Msa0731730:CDS 35.0%
CATGAAGGGTCAATAAAGTA+TGG + chr5_1:43157915-43157934 Msa0731730:CDS 35.0%
TCCTTGTACTTGCACAAAAT+TGG - chr5_1:43157994-43158013 None:intergenic 35.0%
GCAAGTACAAGGAAAAGAAT+TGG + chr5_1:43158001-43158020 Msa0731730:CDS 35.0%
!! GGTTTGTTTGCTATTTACGA+TGG + chr5_1:43158023-43158042 Msa0731730:CDS 35.0%
! CACAATTTCATGGACTGAAT+TGG - chr5_1:43158150-43158169 None:intergenic 35.0%
GATACTAGTGCACAATTTCA+TGG - chr5_1:43158160-43158179 None:intergenic 35.0%
AGAGGATCTGATTGATACAA+AGG + chr5_1:43158286-43158305 Msa0731730:intron 35.0%
GAGGATCTGATTGATACAAA+GGG + chr5_1:43158287-43158306 Msa0731730:intron 35.0%
TGATACAAAGGGACAATTTC+AGG + chr5_1:43158298-43158317 Msa0731730:intron 35.0%
GATACAAAGGGACAATTTCA+GGG + chr5_1:43158299-43158318 Msa0731730:intron 35.0%
ATGTTATGGACAGCTAATGT+CGG + chr5_1:43158565-43158584 Msa0731730:CDS 35.0%
AACACCTATTGTGCAAAAGA+TGG + chr5_1:43158945-43158964 Msa0731730:intron 35.0%
! TCTACCATCTTTTGCACAAT+AGG - chr5_1:43158952-43158971 None:intergenic 35.0%
TGTAAGCAGTCCATGAAATT+AGG + chr5_1:43159164-43159183 Msa0731730:intron 35.0%
ACATTGTTTGTCACAAGCTT+TGG + chr5_1:43159411-43159430 Msa0731730:intron 35.0%
TGTAAGTGGTAGGATTCAAT+TGG + chr5_1:43159435-43159454 Msa0731730:intron 35.0%
GATCATTGCCAATGTTATTG+TGG - chr5_1:43159641-43159660 None:intergenic 35.0%
ACATCAGTACTATGTACATC+GGG - chr5_1:43159762-43159781 None:intergenic 35.0%
GTGAGTTTGACAAAATCACA+AGG - chr5_1:43159973-43159992 None:intergenic 35.0%
!! TGTTTTTGCAGTCCATGAAT+TGG - chr5_1:43160326-43160345 None:intergenic 35.0%
TTAGGAATCTACATGAGAGA+AGG + chr5_1:43160508-43160527 Msa0731730:three_prime_UTR 35.0%
GGTTATATGCATCTAATAGC+TGG + chr5_1:43160555-43160574 Msa0731730:three_prime_UTR 35.0%
ATATGCATCTAATAGCTGGT+TGG + chr5_1:43160559-43160578 Msa0731730:three_prime_UTR 35.0%
! CGCTTTGATCAAGGGTTTTT+AGG + chr5_1:43156563-43156582 Msa0731730:five_prime_UTR 40.0%
GGACTGTGAGAAAATTGTGA+AGG - chr5_1:43157088-43157107 None:intergenic 40.0%
TTCTTTGTCAGCGACTGAAT+TGG - chr5_1:43157109-43157128 None:intergenic 40.0%
!! CAGCCGACTTTTAAACTACA+TGG - chr5_1:43157638-43157657 None:intergenic 40.0%
! AGTCGGCTGTACAAAGTTTT+AGG + chr5_1:43157649-43157668 Msa0731730:intron 40.0%
TATGGTTTCACCCTAGTGAA+AGG + chr5_1:43157933-43157952 Msa0731730:CDS 40.0%
ATGGTTTCACCCTAGTGAAA+GGG + chr5_1:43157934-43157953 Msa0731730:CDS 40.0%
! GCCAATTTTGTGCAAGTACA+AGG + chr5_1:43157990-43158009 Msa0731730:CDS 40.0%
! TCGCATTTTCGATAAAGCGT+AGG - chr5_1:43158190-43158209 None:intergenic 40.0%
!!! CTTTTGAGATAGATGCAGCA+GGG - chr5_1:43158450-43158469 None:intergenic 40.0%
AGCATATCTGAACACAGATC+AGG + chr5_1:43158468-43158487 Msa0731730:CDS 40.0%
! CGAGGCATCATTGAGAATAA+AGG + chr5_1:43158661-43158680 Msa0731730:CDS 40.0%
GGCATCATTGAGAATAAAGG+CGG + chr5_1:43158664-43158683 Msa0731730:CDS 40.0%
!!! CGAGAGCATTTTTAAGTACC+TGG - chr5_1:43158706-43158725 None:intergenic 40.0%
GATTGGAAACGGAGGAATAA+TGG - chr5_1:43158733-43158752 None:intergenic 40.0%
GAAAGCAGACAGATTGGAAA+CGG - chr5_1:43158744-43158763 None:intergenic 40.0%
GAATCTGAAAGCAGACAGAT+TGG - chr5_1:43158750-43158769 None:intergenic 40.0%
! CACGTGGATTATGGAAAACA+TGG - chr5_1:43159247-43159266 None:intergenic 40.0%
TCCATAATCCACGTGATACT+TGG + chr5_1:43159252-43159271 Msa0731730:intron 40.0%
CCAGTTGTCCATTTACTCTA+GGG - chr5_1:43159686-43159705 None:intergenic 40.0%
CTGATCGCAAATGAGACTTT+AGG - chr5_1:43159737-43159756 None:intergenic 40.0%
CATCAGTACTATGTACATCG+GGG - chr5_1:43159761-43159780 None:intergenic 40.0%
!! TTCTTGCAAGTGATGGACTT+TGG + chr5_1:43159805-43159824 Msa0731730:intron 40.0%
CAAGTAACAAGTGTTTGGGT+TGG - chr5_1:43159845-43159864 None:intergenic 40.0%
! TCAGGTAATGGCAAATCAAG+AGG + chr5_1:43160099-43160118 Msa0731730:intron 40.0%
TGCTTCAGCTGTTAATTGCT+TGG - chr5_1:43160167-43160186 None:intergenic 40.0%
CTTGTGTTGTGGTTAGGTTT+AGG + chr5_1:43160215-43160234 Msa0731730:CDS 40.0%
TTACATGGCATGCCAATTCA+TGG + chr5_1:43160311-43160330 Msa0731730:three_prime_UTR 40.0%
TTCTAATTGGACCGGTAAGG+TGG + chr5_1:43156465-43156484 Msa0731730:five_prime_UTR 45.0%
! TTTGCCTTTTCTTCTGTCGC+AGG + chr5_1:43156537-43156556 Msa0731730:five_prime_UTR 45.0%
GAAACCTGCGACAGAAGAAA+AGG - chr5_1:43156544-43156563 None:intergenic 45.0%
GCAGGTTTCGCTTTGATCAA+GGG + chr5_1:43156555-43156574 Msa0731730:five_prime_UTR 45.0%
ATTATGTTGGGAAGGGGACT+TGG + chr5_1:43157344-43157363 Msa0731730:intron 45.0%
GTAATCCTCCATCGGATGAT+TGG - chr5_1:43157964-43157983 None:intergenic 45.0%
CTTGCACAAAATTGGCAACG+TGG - chr5_1:43157986-43158005 None:intergenic 45.0%
! TGCTATTTACGATGGCCACT+TGG + chr5_1:43158031-43158050 Msa0731730:CDS 45.0%
GCTATTTACGATGGCCACTT+GGG + chr5_1:43158032-43158051 Msa0731730:CDS 45.0%
CTATTTACGATGGCCACTTG+GGG + chr5_1:43158033-43158052 Msa0731730:CDS 45.0%
TATTTACGATGGCCACTTGG+GGG + chr5_1:43158034-43158053 Msa0731730:CDS 45.0%
TGCGAAATAGCCACTAACAG+AGG + chr5_1:43158205-43158224 Msa0731730:intron 45.0%
GCGAAATAGCCACTAACAGA+GGG + chr5_1:43158206-43158225 Msa0731730:intron 45.0%
!!! GCTTTTGAGATAGATGCAGC+AGG - chr5_1:43158451-43158470 None:intergenic 45.0%
!! AATAGTTCTGATTTGGGGCG+TGG + chr5_1:43158502-43158521 Msa0731730:CDS 45.0%
TAATGTCGGAGATTCACGAG+CGG + chr5_1:43158579-43158598 Msa0731730:CDS 45.0%
CGAGCGGTTCTTTCAAGAAA+AGG + chr5_1:43158595-43158614 Msa0731730:CDS 45.0%
ATGATGCCTCGTTCTGTGTT+AGG - chr5_1:43158652-43158671 None:intergenic 45.0%
!! GGTTTTGTCTCCAACATTCC+AGG + chr5_1:43158685-43158704 Msa0731730:CDS 45.0%
GTGCATCACGAACTGCTTTA+TGG + chr5_1:43159124-43159143 Msa0731730:intron 45.0%
CACGAACTGCTTTATGGTTG+TGG + chr5_1:43159130-43159149 Msa0731730:intron 45.0%
! GCCAAGTATCACGTGGATTA+TGG - chr5_1:43159256-43159275 None:intergenic 45.0%
TAATCCACGTGATACTTGGC+AGG + chr5_1:43159256-43159275 Msa0731730:intron 45.0%
AATCCACGTGATACTTGGCA+GGG + chr5_1:43159257-43159276 Msa0731730:intron 45.0%
ACTAAAGCTCGTTGGACTTC+TGG - chr5_1:43159325-43159344 None:intergenic 45.0%
! TCACAAGCTTTGGCTGTAAG+TGG + chr5_1:43159421-43159440 Msa0731730:intron 45.0%
! AAGCTTTGGCTGTAAGTGGT+AGG + chr5_1:43159425-43159444 Msa0731730:intron 45.0%
CCCTAGAGTAAATGGACAAC+TGG + chr5_1:43159683-43159702 Msa0731730:CDS 45.0%
GCCAGTTGTCCATTTACTCT+AGG - chr5_1:43159687-43159706 None:intergenic 45.0%
!! TGCAAGTGATGGACTTTGGA+AGG + chr5_1:43159809-43159828 Msa0731730:intron 45.0%
!! TGGATTAGTGACGAGTTCGA+CGG + chr5_1:43159886-43159905 Msa0731730:intron 45.0%
! AATTGCTTGGCTGCTTTCAG+TGG - chr5_1:43160154-43160173 None:intergenic 45.0%
!! AAAAAAATAAAAAAAAAAAG+AGG - chr5_1:43159205-43159224 None:intergenic 5.0%
CGCAGGTTTCGCTTTGATCA+AGG + chr5_1:43156554-43156573 Msa0731730:five_prime_UTR 50.0%
! AAATACCAAGGGGGCACATC+AGG - chr5_1:43157379-43157398 None:intergenic 50.0%
! TCATCATGCAGCACCGGAAA+AGG + chr5_1:43157885-43157904 Msa0731730:CDS 50.0%
! CATCATGCAGCACCGGAAAA+GGG + chr5_1:43157886-43157905 Msa0731730:CDS 50.0%
!! ATTGGCTCGCCCTTTCACTA+GGG - chr5_1:43157946-43157965 None:intergenic 50.0%
GCAACGTGGTAATCCTCCAT+CGG - chr5_1:43157972-43157991 None:intergenic 50.0%
CAGTTTGGTCCCTCTGTTAG+TGG - chr5_1:43158218-43158237 None:intergenic 50.0%
CATGAGCCTAACACAGAACG+AGG + chr5_1:43158643-43158662 Msa0731730:CDS 50.0%
AGCAGACAGATTGGAAACGG+AGG - chr5_1:43158741-43158760 None:intergenic 50.0%
GGCGATGTCCCTAGAGTAAA+TGG + chr5_1:43159675-43159694 Msa0731730:intron 50.0%
! AAGGGGGCACATCAGGATGA+AGG - chr5_1:43157372-43157391 None:intergenic 55.0%
TTCATCCTGATGTGCCCCCT+TGG + chr5_1:43157371-43157390 Msa0731730:intron 55.0%
ACGCGTTCATCATGCAGCAC+CGG + chr5_1:43157879-43157898 Msa0731730:CDS 55.0%
!! GATTGGCTCGCCCTTTCACT+AGG - chr5_1:43157947-43157966 None:intergenic 55.0%
! AAGGCACTTGATCCCCCAAG+TGG - chr5_1:43158049-43158068 None:intergenic 55.0%
!! AGTTCTGATTTGGGGCGTGG+TGG + chr5_1:43158505-43158524 Msa0731730:CDS 55.0%
GTTCCCTGCCAAGTATCACG+TGG - chr5_1:43159263-43159282 None:intergenic 55.0%
CTGGCTGTTGCTCGTGCATT+TGG + chr5_1:43159702-43159721 Msa0731730:CDS 55.0%
AGGGCGAGCCAATCATCCGA+TGG + chr5_1:43157953-43157972 Msa0731730:CDS 60.0%
GCGAGCCAATCATCCGATGG+AGG + chr5_1:43157956-43157975 Msa0731730:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 43156443 43160606 43156443 ID=Msa0731730;Name=Msa0731730
chr5_1 mRNA 43156443 43160606 43156443 ID=Msa0731730-mRNA-1;Parent=Msa0731730;Name=Msa0731730-mRNA-1;_AED=0.07;_eAED=0.07;_QI=323|0.5|0.6|1|1|1|5|366|244
chr5_1 exon 43156443 43156804 43156443 ID=Msa0731730-mRNA-1:exon:12326;Parent=Msa0731730-mRNA-1
chr5_1 exon 43157870 43158061 43157870 ID=Msa0731730-mRNA-1:exon:12327;Parent=Msa0731730-mRNA-1
chr5_1 exon 43158430 43158706 43158430 ID=Msa0731730-mRNA-1:exon:12328;Parent=Msa0731730-mRNA-1
chr5_1 exon 43159676 43159764 43159676 ID=Msa0731730-mRNA-1:exon:12329;Parent=Msa0731730-mRNA-1
chr5_1 exon 43160103 43160606 43160103 ID=Msa0731730-mRNA-1:exon:12330;Parent=Msa0731730-mRNA-1
chr5_1 five_prime_UTR 43156443 43156765 43156443 ID=Msa0731730-mRNA-1:five_prime_utr;Parent=Msa0731730-mRNA-1
chr5_1 CDS 43156766 43156804 43156766 ID=Msa0731730-mRNA-1:cds;Parent=Msa0731730-mRNA-1
chr5_1 CDS 43157870 43158061 43157870 ID=Msa0731730-mRNA-1:cds;Parent=Msa0731730-mRNA-1
chr5_1 CDS 43158430 43158706 43158430 ID=Msa0731730-mRNA-1:cds;Parent=Msa0731730-mRNA-1
chr5_1 CDS 43159676 43159764 43159676 ID=Msa0731730-mRNA-1:cds;Parent=Msa0731730-mRNA-1
chr5_1 CDS 43160103 43160240 43160103 ID=Msa0731730-mRNA-1:cds;Parent=Msa0731730-mRNA-1
chr5_1 three_prime_UTR 43160241 43160606 43160241 ID=Msa0731730-mRNA-1:three_prime_utr;Parent=Msa0731730-mRNA-1
Gene Sequence

>Msa0731730

ATGGATAAATTTTGTTGTTTAAAGTCTTCTTTTTCTAAGCTTGTATCGACGCGTTCATCATGCAGCACCGGAAAAGGGAAAAATCATGAAGGGTCAATAAAGTATGGTTTCACCCTAGTGAAAGGGCGAGCCAATCATCCGATGGAGGATTACCACGTTGCCAATTTTGTGCAAGTACAAGGAAAAGAATTGGGTTTGTTTGCTATTTACGATGGCCACTTGGGGGATCAAGGTGCATTTTGGGATGACCCTGCTGCATCTATCTCAAAAGCATATCTGAACACAGATCAGGCAATTCTTTCAAATAGTTCTGATTTGGGGCGTGGTGGATCAACAGCTGTTACTGCAATATTAATCAATGGTCAAATGTTATGGACAGCTAATGTCGGAGATTCACGAGCGGTTCTTTCAAGAAAAGGTCAAGCAGTGCAATTGACTACTGATCATGAGCCTAACACAGAACGAGGCATCATTGAGAATAAAGGCGGTTTTGTCTCCAACATTCCAGGCGATGTCCCTAGAGTAAATGGACAACTGGCTGTTGCTCGTGCATTTGGAGACAAGAGCCTAAAGTCTCATTTGCGATCAGACCCCGATGTAATGGCAAATCAAGAGGCAGTTGATATTGCTAGAAAAGTGAAAGATCCACTGAAAGCAGCCAAGCAATTAACAGCTGAAGCATTAAAAAGAGAAAGTAAAGATGATATATCTTGTGTTGTGGTTAGGTTTAGGTGA
Protein sequence

>Msa0731730

MDKFCCLKSSFSKLVSTRSSCSTGKGKNHEGSIKYGFTLVKGRANHPMEDYHVANFVQVQGKELGLFAIYDGHLGDQGAFWDDPAASISKAYLNTDQAILSNSSDLGRGGSTAVTAILINGQMLWTANVGDSRAVLSRKGQAVQLTTDHEPNTERGIIENKGGFVSNIPGDVPRVNGQLAVARAFGDKSLKSHLRSDPDVMANQEAVDIARKVKDPLKAAKQLTAEALKRESKDDISCVVVRFR*