Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333850 | PNX94886.1 | 90.214 | 327 | 32 | 0 | 1 | 327 | 1 | 327 | 0.0 | 614 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333850 | sp|F4ICF4|RBL10_ARATH | 56.863 | 306 | 117 | 3 | 23 | 313 | 25 | 330 | 1.80e-117 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010490 | Msa0333850 | -0.823836 | 1.117917e-53 | -8.615850e-47 |
| Msa0036540 | Msa0333850 | -0.816170 | 6.349506e-52 | -8.615850e-47 |
| Msa0071250 | Msa0333850 | -0.835245 | 1.876912e-56 | -8.615850e-47 |
| Msa0090510 | Msa0333850 | -0.816801 | 4.586246e-52 | -8.615850e-47 |
| Msa0100290 | Msa0333850 | -0.805550 | 1.264785e-49 | -8.615850e-47 |
| Msa0144530 | Msa0333850 | -0.808089 | 3.676427e-50 | -8.615850e-47 |
| Msa0183910 | Msa0333850 | -0.814682 | 1.360327e-51 | -8.615850e-47 |
| Msa0187490 | Msa0333850 | -0.804254 | 2.359560e-49 | -8.615850e-47 |
| Msa0216850 | Msa0333850 | 0.910037 | 2.930452e-82 | -8.615850e-47 |
| Msa0233370 | Msa0333850 | -0.808389 | 3.172926e-50 | -8.615850e-47 |
| Msa0278580 | Msa0333850 | -0.807059 | 6.081128e-50 | -8.615850e-47 |
| Msa0284180 | Msa0333850 | -0.806588 | 7.648823e-50 | -8.615850e-47 |
| Msa0295460 | Msa0333850 | 0.802987 | 4.321990e-49 | -8.615850e-47 |
| Msa0296050 | Msa0333850 | 0.938431 | 6.801738e-99 | -8.615850e-47 |
| Msa0311720 | Msa0333850 | -0.802710 | 4.930732e-49 | -8.615850e-47 |
| Msa0317960 | Msa0333850 | -0.814906 | 1.213250e-51 | -8.615850e-47 |
| Msa0322240 | Msa0333850 | -0.821922 | 3.121054e-53 | -8.615850e-47 |
| Msa0333850 | Msa0333970 | 0.935751 | 5.173766e-97 | -8.615850e-47 |
| Msa0333850 | Msa0378970 | -0.809622 | 1.727830e-50 | -8.615850e-47 |
| Msa0333850 | Msa0403500 | -0.810669 | 1.027710e-50 | -8.615850e-47 |
| Msa0333850 | Msa0427580 | -0.830710 | 2.519218e-55 | -8.615850e-47 |
| Msa0333850 | Msa0430060 | -0.814118 | 1.812964e-51 | -8.615850e-47 |
| Msa0333850 | Msa0430150 | -0.812725 | 3.668969e-51 | -8.615850e-47 |
| Msa0333850 | Msa0474940 | -0.807812 | 4.210073e-50 | -8.615850e-47 |
| Msa0333850 | Msa0481030 | -0.816893 | 4.373466e-52 | -8.615850e-47 |
| Msa0333850 | Msa0500470 | -0.823587 | 1.278564e-53 | -8.615850e-47 |
| Msa0333850 | Msa0502090 | -0.810925 | 9.043591e-51 | -8.615850e-47 |
| Msa0333850 | Msa0518170 | -0.822613 | 2.156951e-53 | -8.615850e-47 |
| Msa0333850 | Msa0519160 | -0.803216 | 3.874482e-49 | -8.615850e-47 |
| Msa0333850 | Msa0569780 | -0.817103 | 3.923438e-52 | -8.615850e-47 |
| Msa0333850 | Msa0576120 | 0.819024 | 1.443272e-52 | -8.615850e-47 |
| Msa0333850 | Msa0581280 | -0.832452 | 9.379739e-56 | -8.615850e-47 |
| Msa0333850 | Msa0665100 | -0.806087 | 9.754013e-50 | -8.615850e-47 |
| Msa0333850 | Msa0705990 | -0.822220 | 2.662036e-53 | -8.615850e-47 |
| Msa0333850 | Msa0731730 | -0.808481 | 3.031767e-50 | -8.615850e-47 |
| Msa0333850 | Msa0741440 | -0.805149 | 1.534241e-49 | -8.615850e-47 |
| Msa0333850 | Msa0763330 | -0.826669 | 2.390057e-54 | -8.615850e-47 |
| Msa0333850 | Msa0800370 | -0.809942 | 1.474696e-50 | -8.615850e-47 |
| Msa0333850 | Msa0822500 | -0.803258 | 3.798993e-49 | -8.615850e-47 |
| Msa0333850 | Msa0847470 | -0.802510 | 5.422690e-49 | -8.615850e-47 |
| Msa0333850 | Msa1085610 | 0.804777 | 1.835846e-49 | -8.615850e-47 |
| Msa0333850 | Msa1089460 | -0.801503 | 8.730793e-49 | -8.615850e-47 |
| Msa0333850 | Msa1158390 | -0.809003 | 2.345579e-50 | -8.615850e-47 |
| Msa0333850 | Msa1176170 | -0.806369 | 8.507812e-50 | -8.615850e-47 |
| Msa0333850 | Msa1183140 | -0.841483 | 4.624933e-58 | -8.615850e-47 |
| Msa0333850 | Msa1206400 | 0.819240 | 1.288394e-52 | -8.615850e-47 |
| Msa0333850 | Msa1206450 | 0.827568 | 1.456231e-54 | -8.615850e-47 |
| Msa0333850 | Msa1206650 | -0.800394 | 1.471459e-48 | -8.615850e-47 |
| Msa0333850 | Msa1207310 | -0.803482 | 3.413713e-49 | -8.615850e-47 |
| Msa0333850 | Msa1209200 | -0.823608 | 1.263939e-53 | -8.615850e-47 |
| Msa0333850 | Msa1214170 | -0.810011 | 1.424912e-50 | -8.615850e-47 |
| Msa0333850 | Msa1226470 | -0.802281 | 6.044809e-49 | -8.615850e-47 |
| Msa0333850 | Msa1229480 | -0.802929 | 4.441742e-49 | -8.615850e-47 |
| Msa0333850 | Msa1236110 | 0.810168 | 1.317858e-50 | -8.615850e-47 |
| Msa0333850 | Msa1272010 | -0.811115 | 8.227287e-51 | -8.615850e-47 |
| Msa0333850 | Msa1277410 | -0.806759 | 7.037606e-50 | -8.615850e-47 |
| Msa0333850 | Msa1307160 | -0.817036 | 4.060535e-52 | -8.615850e-47 |
| Msa0333850 | Msa1307180 | -0.840311 | 9.386320e-58 | -8.615850e-47 |
| Msa0333850 | Msa1309760 | -0.822985 | 1.766562e-53 | -8.615850e-47 |
| Msa0333850 | Msa1316360 | -0.844826 | 5.943100e-59 | -8.615850e-47 |
| Msa0333850 | Msa1336560 | -0.808743 | 2.666201e-50 | -8.615850e-47 |
| Msa0333850 | Msa1359400 | -0.828299 | 9.712888e-55 | -8.615850e-47 |
| Msa0333850 | Msa1360020 | -0.804264 | 2.348188e-49 | -8.615850e-47 |
| Msa0333850 | Msa1364210 | -0.801634 | 8.207279e-49 | -8.615850e-47 |
| Msa0333850 | Msa1369920 | 0.807988 | 3.861781e-50 | -8.615850e-47 |
| Msa0333850 | Msa1382020 | -0.800765 | 1.235931e-48 | -8.615850e-47 |
| Msa0333850 | Msa1382380 | 0.804821 | 1.797334e-49 | -8.615850e-47 |
| Msa0333850 | Msa1407190 | -0.807422 | 5.093359e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333850 | MtrunA17_Chr2g0318441 | 95.719 | 327 | 14 | 0 | 1 | 327 | 1 | 327 | 0.0 | 596 |
| Msa0333850 | MtrunA17_Chr6g0457251 | 31.928 | 166 | 110 | 2 | 144 | 306 | 206 | 371 | 6.72e-20 | 89.7 |
| Msa0333850 | MtrunA17_Chr6g0472501 | 31.677 | 161 | 104 | 3 | 133 | 292 | 94 | 249 | 5.59e-13 | 68.6 |
| Msa0333850 | MtrunA17_Chr2g0332941 | 29.452 | 146 | 96 | 3 | 151 | 290 | 103 | 247 | 2.69e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333850 | AT1G25290.2 | 58.528 | 299 | 116 | 2 | 23 | 313 | 25 | 323 | 8.96e-122 | 353 |
| Msa0333850 | AT1G25290.1 | 56.863 | 306 | 117 | 3 | 23 | 313 | 25 | 330 | 1.83e-118 | 345 |
| Msa0333850 | AT5G38510.2 | 32.258 | 155 | 104 | 1 | 142 | 295 | 216 | 370 | 8.99e-17 | 81.3 |
| Msa0333850 | AT5G38510.3 | 32.258 | 155 | 104 | 1 | 142 | 295 | 216 | 370 | 8.99e-17 | 81.3 |
| Msa0333850 | AT5G38510.1 | 32.258 | 155 | 104 | 1 | 142 | 295 | 216 | 370 | 8.99e-17 | 81.3 |
| Msa0333850 | AT1G77860.1 | 32.558 | 172 | 107 | 5 | 142 | 310 | 111 | 276 | 2.59e-15 | 76.3 |
| Msa0333850 | AT1G77860.2 | 32.558 | 172 | 107 | 5 | 142 | 310 | 111 | 276 | 2.97e-15 | 76.3 |
| Msa0333850 | AT1G63120.1 | 30.380 | 158 | 106 | 3 | 151 | 305 | 104 | 260 | 4.01e-13 | 69.3 |
| Msa0333850 | AT5G07250.1 | 32.168 | 143 | 95 | 2 | 149 | 290 | 126 | 267 | 1.99e-12 | 67.8 |
| Msa0333850 | AT2G29050.1 | 30.719 | 153 | 102 | 3 | 147 | 296 | 119 | 270 | 2.75e-12 | 67.4 |
| Msa0333850 | AT1G52580.1 | 31.034 | 145 | 90 | 3 | 145 | 283 | 94 | 234 | 5.27e-12 | 66.2 |
| Msa0333850 | AT1G12750.4 | 31.915 | 141 | 94 | 2 | 151 | 290 | 91 | 230 | 8.76e-12 | 65.5 |
| Msa0333850 | AT1G12750.7 | 31.915 | 141 | 94 | 2 | 151 | 290 | 91 | 230 | 8.76e-12 | 65.5 |
| Msa0333850 | AT1G12750.6 | 31.915 | 141 | 94 | 2 | 151 | 290 | 91 | 230 | 8.76e-12 | 65.5 |
| Msa0333850 | AT1G12750.3 | 31.915 | 141 | 94 | 2 | 151 | 290 | 91 | 230 | 8.76e-12 | 65.5 |
| Msa0333850 | AT1G12750.1 | 31.915 | 141 | 94 | 2 | 151 | 290 | 91 | 230 | 8.76e-12 | 65.5 |
Find 115 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCACATTATAGTTCATTT+TGG | 0.165320 | 2_4:+51924492 | None:intergenic |
| GTCCACTTCCTTCCATTAAA+TGG | 0.175610 | 2_4:+51927527 | None:intergenic |
| ACATAAGTTAAAGGGGTTTC+AGG | 0.225941 | 2_4:+51924610 | None:intergenic |
| GTATTTCTCATGCAGCTTAT+TGG | 0.251876 | 2_4:-51925892 | Msa0333850:intron |
| TATTTCTCATGCAGCTTATT+GGG | 0.272605 | 2_4:-51925891 | Msa0333850:intron |
| AGTGGGACCAACTGAATTTA+AGG | 0.276075 | 2_4:+51926784 | None:intergenic |
| AAGTATGCAACATAAGTTAA+AGG | 0.285351 | 2_4:+51924601 | None:intergenic |
| ATTGCTGCATCATGGCTTAT+TGG | 0.290926 | 2_4:-51924881 | Msa0333850:CDS |
| GAAACATTTCATCGGCCTAT+TGG | 0.295999 | 2_4:-51924747 | Msa0333850:three_prime_UTR |
| TGTTTAGATTGAAGGATAAA+TGG | 0.318157 | 2_4:-51927703 | Msa0333850:CDS |
| CATCAACTGGCATTGACAAC+TGG | 0.321814 | 2_4:-51925864 | Msa0333850:CDS |
| ACCATTCAAATATTCTCTTA+AGG | 0.329000 | 2_4:+51924644 | None:intergenic |
| TGCTCCCGTGTTTAGATTGA+AGG | 0.329417 | 2_4:-51927711 | Msa0333850:CDS |
| GCATTTCCAGAGCTGGCTTC+AGG | 0.332234 | 2_4:+51927575 | None:intergenic |
| GGGAGACACGGTGGCTGAAA+TGG | 0.347067 | 2_4:+51928581 | None:intergenic |
| CAGGTGCAGCTATGAGTTAT+TGG | 0.355414 | 2_4:-51926619 | Msa0333850:CDS |
| AGTATGCAACATAAGTTAAA+GGG | 0.361682 | 2_4:+51924602 | None:intergenic |
| CCCACTGTGGAGAGCTTTAG+TGG | 0.376144 | 2_4:-51926767 | Msa0333850:CDS |
| AATTCAATCCTTTGAGTTGA+AGG | 0.377772 | 2_4:+51927669 | None:intergenic |
| CCATTCAAATATTCTCTTAA+GGG | 0.378361 | 2_4:+51924645 | None:intergenic |
| TTACTCCAGATTCATTGTTT+CGG | 0.386927 | 2_4:+51924370 | None:intergenic |
| ACAAGTAATTGCCCTCAATA+TGG | 0.389857 | 2_4:-51926248 | Msa0333850:intron |
| AACATCCGAAACAATGAATC+TGG | 0.390583 | 2_4:-51924375 | Msa0333850:three_prime_UTR |
| CATGAATCCACATCTTTAGA+TGG | 0.393473 | 2_4:-51924845 | Msa0333850:CDS |
| TGCAAATATTGGACACCTAA+TGG | 0.395874 | 2_4:-51926903 | Msa0333850:intron |
| AGATTCATTGTTTCGGATGT+TGG | 0.399746 | 2_4:+51924377 | None:intergenic |
| TCTACTTCGTTCCTGTCTCC+AGG | 0.414096 | 2_4:-51928539 | Msa0333850:intron |
| CCCACCTGGATGCACCGCTC+CGG | 0.417368 | 2_4:-51924421 | Msa0333850:three_prime_UTR |
| CTTATTGGGTTATCATCAAC+TGG | 0.417736 | 2_4:-51925877 | Msa0333850:CDS |
| TCTTAAGGGAAGCTTACAAC+AGG | 0.420919 | 2_4:+51924659 | None:intergenic |
| GAAATGGAGGGACGCGGCGG+TGG | 0.422096 | 2_4:+51928597 | None:intergenic |
| TTTCAGTTAGGAGGCTTGAT+TGG | 0.428722 | 2_4:-51924908 | Msa0333850:intron |
| ATCTTGAAGAGATTATATAT+TGG | 0.429421 | 2_4:+51924797 | None:intergenic |
| CTGTCACCGGTTTGCAAGGT+GGG | 0.434972 | 2_4:-51928643 | Msa0333850:CDS |
| TGTTTCTATTTCCATGGCTT+AGG | 0.437025 | 2_4:+51924764 | None:intergenic |
| CCCACGACAAAAGCTTGCCT+TGG | 0.437216 | 2_4:+51927080 | None:intergenic |
| CATAAGTTAAAGGGGTTTCA+GGG | 0.437219 | 2_4:+51924611 | None:intergenic |
| TGAGTCGGCATTTCCAGAGC+TGG | 0.439376 | 2_4:+51927568 | None:intergenic |
| CCACCCGGAGCGGTGCATCC+AGG | 0.442660 | 2_4:+51924417 | None:intergenic |
| TTGCAAACCGGTGACAGAAA+TGG | 0.444522 | 2_4:+51928649 | None:intergenic |
| GCTTGCGCTTGTAATCCAAT+AGG | 0.449056 | 2_4:+51924732 | None:intergenic |
| CCACCTGGATGCACCGCTCC+GGG | 0.451604 | 2_4:-51924420 | Msa0333850:three_prime_UTR |
| TTAAGGCACAAAGACCTTGT+AGG | 0.451701 | 2_4:-51926301 | Msa0333850:CDS |
| ATGCCCGCAGTAGGTGCGTC+AGG | 0.456949 | 2_4:-51926587 | Msa0333850:CDS |
| AACCGGTGACAGAAATGGCT+TGG | 0.460775 | 2_4:+51928654 | None:intergenic |
| CCCTTAAGAGAATATTTGAA+TGG | 0.461614 | 2_4:-51924645 | Msa0333850:three_prime_UTR |
| GGAAGACCTGAAGCCAGCTC+TGG | 0.461947 | 2_4:-51927581 | Msa0333850:CDS |
| GCGGTGCATCCAGGTGGGAT+TGG | 0.462658 | 2_4:+51924426 | None:intergenic |
| TATCTTCAATTGTCAAGTGA+TGG | 0.464338 | 2_4:-51927647 | Msa0333850:CDS |
| GCCCAAGCCATTTCTGTCAC+CGG | 0.466220 | 2_4:-51928656 | Msa0333850:CDS |
| ATGAAATGTTTCTATTTCCA+TGG | 0.474316 | 2_4:+51924758 | None:intergenic |
| CCACGACAAAAGCTTGCCTT+GGG | 0.477575 | 2_4:+51927081 | None:intergenic |
| GGTTTAGGTTGGATCGGTTG+CGG | 0.482114 | 2_4:-51926332 | Msa0333850:intron |
| ATCAACTGGCATTGACAACT+GGG | 0.484122 | 2_4:-51925863 | Msa0333850:CDS |
| ATCTTCAATTGTCAAGTGAT+GGG | 0.485198 | 2_4:-51927646 | Msa0333850:CDS |
| CACAGACACTTACCATATTG+AGG | 0.490333 | 2_4:+51926236 | None:intergenic |
| GCTCCTGACGCACCTACTGC+GGG | 0.496035 | 2_4:+51926584 | None:intergenic |
| TGCTCCTGACGCACCTACTG+CGG | 0.497688 | 2_4:+51926583 | None:intergenic |
| ACCGGTGACAGAAATGGCTT+GGG | 0.501021 | 2_4:+51928655 | None:intergenic |
| CAGTTAGGAGGCTTGATTGG+TGG | 0.501779 | 2_4:-51924905 | Msa0333850:CDS |
| TGTTACTCCTTAAATTCAGT+TGG | 0.501810 | 2_4:-51926791 | Msa0333850:CDS |
| TAAGGACCCACCTTGCAAAC+CGG | 0.514465 | 2_4:+51928637 | None:intergenic |
| GTAGAAAGTGAAGGCGGAGA+CGG | 0.519386 | 2_4:+51928557 | None:intergenic |
| ATCCATTTAATGGAAGGAAG+TGG | 0.533831 | 2_4:-51927529 | Msa0333850:CDS |
| ACAGACACTTACCATATTGA+GGG | 0.537873 | 2_4:+51926237 | None:intergenic |
| GGCGGAGACGGTGGGAGACA+CGG | 0.537970 | 2_4:+51928569 | None:intergenic |
| TCATTGACAAAGGACAACTT+TGG | 0.538888 | 2_4:-51926952 | Msa0333850:CDS |
| ATTTCTGTCACCGGTTTGCA+AGG | 0.538917 | 2_4:-51928647 | Msa0333850:CDS |
| GTGGATTCATGCTTCCATGC+AGG | 0.542563 | 2_4:+51924857 | None:intergenic |
| GAAAGTGAAGGCGGAGACGG+TGG | 0.544225 | 2_4:+51928560 | None:intergenic |
| TTGGTGGAATTGCTGCATCA+TGG | 0.545395 | 2_4:-51924889 | Msa0333850:CDS |
| TGTAATGGTTTAGGTTGGAT+CGG | 0.547688 | 2_4:-51926338 | Msa0333850:intron |
| GCAATGATATCAAGTGGGTA+AGG | 0.550443 | 2_4:+51928619 | None:intergenic |
| TAAATTGCAAGATATCTTCG+AGG | 0.552516 | 2_4:+51926743 | None:intergenic |
| CACAAAGACCTTGTAGGAGG+TGG | 0.557075 | 2_4:-51926295 | Msa0333850:CDS |
| TCTTCTTCCATCTAAAGATG+TGG | 0.558989 | 2_4:+51924838 | None:intergenic |
| CCCGGAGCGGTGCATCCAGG+TGG | 0.563975 | 2_4:+51924420 | None:intergenic |
| TTAAGAGAATATTTGAATGG+TGG | 0.565446 | 2_4:-51924642 | Msa0333850:three_prime_UTR |
| CCTGGATGCACCGCTCCGGG+TGG | 0.566387 | 2_4:-51924417 | Msa0333850:three_prime_UTR |
| CAAAGATGCCTTCAACTCAA+AGG | 0.568006 | 2_4:-51927677 | Msa0333850:CDS |
| CTCACAAAACATTGGCAGCA+AGG | 0.571689 | 2_4:+51927495 | None:intergenic |
| AGACACGGTGGCTGAAATGG+AGG | 0.574356 | 2_4:+51928584 | None:intergenic |
| CTGGATGCACCGCTCCGGGT+GGG | 0.583511 | 2_4:-51924416 | Msa0333850:three_prime_UTR |
| TCTGTCACCGGTTTGCAAGG+TGG | 0.583568 | 2_4:-51928644 | Msa0333850:CDS |
| CCACTAAAGCTCTCCACAGT+GGG | 0.584557 | 2_4:+51926767 | None:intergenic |
| TGGAAATAGAAACATTTCAT+CGG | 0.586800 | 2_4:-51924755 | Msa0333850:exon |
| GTGGCTGAAATGGAGGGACG+CGG | 0.589774 | 2_4:+51928591 | None:intergenic |
| GCGGTTACTTGCAATTGAAG+AGG | 0.591639 | 2_4:+51926715 | None:intergenic |
| GTTGCGCAACTTGCAACCCA+AGG | 0.593062 | 2_4:-51927097 | Msa0333850:CDS |
| GACACGGTGGCTGAAATGGA+GGG | 0.603040 | 2_4:+51928585 | None:intergenic |
| TTATCCTTCAATCTAAACAC+GGG | 0.608819 | 2_4:+51927707 | None:intergenic |
| TGCTCATACTCACAAAACAT+TGG | 0.609078 | 2_4:+51927487 | None:intergenic |
| CATGGCTTATTGGACCTGCA+TGG | 0.609641 | 2_4:-51924871 | Msa0333850:CDS |
| GTATGCAACATAAGTTAAAG+GGG | 0.609786 | 2_4:+51924603 | None:intergenic |
| TTACGAGAGGACCTAAGCCA+TGG | 0.618911 | 2_4:-51924775 | Msa0333850:CDS |
| CCGGAGCGGTGCATCCAGGT+GGG | 0.620667 | 2_4:+51924421 | None:intergenic |
| GCGGTGGCAATGATATCAAG+TGG | 0.623394 | 2_4:+51928613 | None:intergenic |
| ACCCAAAATGAACTATAATG+TGG | 0.625351 | 2_4:-51924494 | Msa0333850:three_prime_UTR |
| AATGATGTTGAATTCCCACC+CGG | 0.626961 | 2_4:+51924402 | None:intergenic |
| AGGCACAAAGACCTTGTAGG+AGG | 0.629028 | 2_4:-51926298 | Msa0333850:CDS |
| TTCTGCAAAATGCCCGCAGT+AGG | 0.637489 | 2_4:-51926596 | Msa0333850:CDS |
| GTAAACAGTCTCATTGACAA+AGG | 0.638755 | 2_4:-51926962 | Msa0333850:CDS |
| GCTGAAATGGAGGGACGCGG+CGG | 0.649712 | 2_4:+51928594 | None:intergenic |
| TTTATCCTTCAATCTAAACA+CGG | 0.650319 | 2_4:+51927706 | None:intergenic |
| CTTAAGGGAAGCTTACAACA+GGG | 0.652533 | 2_4:+51924660 | None:intergenic |
| AAAGTGAAGGCGGAGACGGT+GGG | 0.654962 | 2_4:+51928561 | None:intergenic |
| CGGTGGCAATGATATCAAGT+GGG | 0.662467 | 2_4:+51928614 | None:intergenic |
| AACGAAGTAGAAAGTGAAGG+CGG | 0.666662 | 2_4:+51928551 | None:intergenic |
| AGGAACGAAGTAGAAAGTGA+AGG | 0.668444 | 2_4:+51928548 | None:intergenic |
| TGTTGAATTCCCACCCGGAG+CGG | 0.669454 | 2_4:+51924407 | None:intergenic |
| AATCTCTTCAAGATTACGAG+AGG | 0.669871 | 2_4:-51924788 | Msa0333850:CDS |
| AAATTCAGTTGGTCCCACTG+TGG | 0.708926 | 2_4:-51926780 | Msa0333850:CDS |
| GGAGACGGTGGGAGACACGG+TGG | 0.711069 | 2_4:+51928572 | None:intergenic |
| ACCACTAAAGCTCTCCACAG+TGG | 0.711367 | 2_4:+51926766 | None:intergenic |
| TCAACTGGCATTGACAACTG+GGG | 0.722807 | 2_4:-51925862 | Msa0333850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTTTTTTTTAAAA+TGG | + | chr2_4:51926620-51926639 | None:intergenic | 0.0% |
| !!! | TATATTTTTTCTTCTTATTT+AGG | - | chr2_4:51927026-51927045 | Msa0333850:intron | 10.0% |
| !! | TAAGAAAATGAAAAATTTAA+GGG | + | chr2_4:51927294-51927313 | None:intergenic | 10.0% |
| !!! | TTAATGTTGATGATTAAAAT+GGG | - | chr2_4:51924743-51924762 | Msa0333850:three_prime_UTR | 15.0% |
| !!! | AAAGTAAAATTGTTTTTGTA+TGG | - | chr2_4:51924826-51924845 | Msa0333850:CDS | 15.0% |
| !!! | AAGTAAAATTGTTTTTGTAT+GGG | - | chr2_4:51924827-51924846 | Msa0333850:CDS | 15.0% |
| !!! | ATTATGGAATTAGAATATTT+TGG | + | chr2_4:51926437-51926456 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTAAAATGGTTCA+GGG | + | chr2_4:51926613-51926632 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTAAAATGGTTC+AGG | + | chr2_4:51926614-51926633 | None:intergenic | 15.0% |
| !! | CTAAGAAAATGAAAAATTTA+AGG | + | chr2_4:51927295-51927314 | None:intergenic | 15.0% |
| !!! | TTTATTCACTTTTTAAAATG+TGG | - | chr2_4:51927374-51927393 | Msa0333850:intron | 15.0% |
| !!! | ATTTTGAGAAAAAGAAAAAT+TGG | + | chr2_4:51927593-51927612 | None:intergenic | 15.0% |
| !! | AAATTGCAAAAATTTAGACT+TGG | - | chr2_4:51924599-51924618 | Msa0333850:three_prime_UTR | 20.0% |
| !!! | TAGTTATATTTTCCTCATTT+AGG | - | chr2_4:51924647-51924666 | Msa0333850:three_prime_UTR | 20.0% |
| !!! | GTTAATGTTGATGATTAAAA+TGG | - | chr2_4:51924742-51924761 | Msa0333850:three_prime_UTR | 20.0% |
| !! | ATGATACAATCACTTAATTA+AGG | + | chr2_4:51925003-51925022 | None:intergenic | 20.0% |
| !!! | TTTTTATTAGTTCTCTATGA+TGG | + | chr2_4:51925112-51925131 | None:intergenic | 20.0% |
| !!! | AAATACTTGTTAGATTGTTT+GGG | + | chr2_4:51925230-51925249 | None:intergenic | 20.0% |
| !!! | TAAATACTTGTTAGATTGTT+TGG | + | chr2_4:51925231-51925250 | None:intergenic | 20.0% |
| !!! | ATCATTGATTAACAAATCAA+AGG | + | chr2_4:51925771-51925790 | None:intergenic | 20.0% |
| !!! | TTTTAATACAAAACTAAACC+AGG | + | chr2_4:51926250-51926269 | None:intergenic | 20.0% |
| !! | TATTGTAGGAATAATATAAG+CGG | + | chr2_4:51926394-51926413 | None:intergenic | 20.0% |
| !!! | TTTTTTTTAAAATGGTTCAG+GGG | + | chr2_4:51926612-51926631 | None:intergenic | 20.0% |
| !! | TTATTTAGGAAATGTTTGTT+CGG | - | chr2_4:51927040-51927059 | Msa0333850:intron | 20.0% |
| !!! | AATAAATGAGGGTATAATAA+TGG | + | chr2_4:51927659-51927678 | None:intergenic | 20.0% |
| !!! | ATTAATTGTGTTGATTTTGA+TGG | + | chr2_4:51927754-51927773 | None:intergenic | 20.0% |
| !! | CTGAAAAATGTATATGTTAA+TGG | + | chr2_4:51928165-51928184 | None:intergenic | 20.0% |
| !!! | AACATATACATTTTTCAGTT+AGG | - | chr2_4:51928167-51928186 | Msa0333850:intron | 20.0% |
| !! | ATCTTGAAGAGATTATATAT+TGG | + | chr2_4:51928293-51928312 | None:intergenic | 20.0% |
| !!! | AAGAAGCCAATTTTTTTTTG+CGG | - | chr2_4:51924381-51924400 | Msa0333850:three_prime_UTR | 25.0% |
| ! | TTCTTTCTATAACCTAAATG+AGG | + | chr2_4:51924662-51924681 | None:intergenic | 25.0% |
| ! | ATAGAAAGAAACCATTGAAA+TGG | - | chr2_4:51924672-51924691 | Msa0333850:three_prime_UTR | 25.0% |
| ! | ACTTAAATACTCCATTTCAA+TGG | + | chr2_4:51924686-51924705 | None:intergenic | 25.0% |
| !! | TTGATGATTAAAATGGGAAT+AGG | - | chr2_4:51924749-51924768 | Msa0333850:three_prime_UTR | 25.0% |
| ! | AATTAAGGATATGTTTGGAT+TGG | + | chr2_4:51924988-51925007 | None:intergenic | 25.0% |
| ! | CACTTAATTAAGGATATGTT+TGG | + | chr2_4:51924993-51925012 | None:intergenic | 25.0% |
| ! | TTTATCCTTCAATCTAAACA+CGG | + | chr2_4:51925384-51925403 | None:intergenic | 25.0% |
| ! | TGTTTAGATTGAAGGATAAA+TGG | - | chr2_4:51925384-51925403 | Msa0333850:intron | 25.0% |
| !!! | GCTAGTTTCTCTTTTTTTAA+TGG | - | chr2_4:51925482-51925501 | Msa0333850:intron | 25.0% |
| !!! | AGTTTCTCTTTTTTTAATGG+AGG | - | chr2_4:51925485-51925504 | Msa0333850:intron | 25.0% |
| ! | TCCAGAAAAAATCCATTTAA+TGG | - | chr2_4:51925548-51925567 | Msa0333850:intron | 25.0% |
| !!! | TCCATTAAATGGATTTTTTC+TGG | + | chr2_4:51925552-51925571 | None:intergenic | 25.0% |
| ! | GAAAAAATCCATTTAATGGA+AGG | - | chr2_4:51925552-51925571 | Msa0333850:intron | 25.0% |
| ! | AAACTTAATACACCAATCAA+GGG | + | chr2_4:51925630-51925649 | None:intergenic | 25.0% |
| ! | TAAACTTAATACACCAATCA+AGG | + | chr2_4:51925631-51925650 | None:intergenic | 25.0% |
| ! | AGTGAAAAGAAAGAAAAACA+AGG | - | chr2_4:51925694-51925713 | Msa0333850:intron | 25.0% |
| ! | GTGAAAAGAAAGAAAAACAA+GGG | - | chr2_4:51925695-51925714 | Msa0333850:intron | 25.0% |
| ! | CAGAAAAATGAAGAGAAAAA+TGG | + | chr2_4:51925866-51925885 | None:intergenic | 25.0% |
| !! | GTATCTAAAATTGTGAAAAG+AGG | + | chr2_4:51925914-51925933 | None:intergenic | 25.0% |
| ! | TTAATTCAAATCCTACCATT+AGG | + | chr2_4:51926202-51926221 | None:intergenic | 25.0% |
| !!! | ATTAGAATATTTTGGAGGTA+AGG | + | chr2_4:51926429-51926448 | None:intergenic | 25.0% |
| !!! | ATGGAATTAGAATATTTTGG+AGG | + | chr2_4:51926434-51926453 | None:intergenic | 25.0% |
| !! | TCCATAATTTCTAGAAAATC+AGG | - | chr2_4:51926449-51926468 | Msa0333850:intron | 25.0% |
| !!! | ACCTGATTTTCTAGAAATTA+TGG | + | chr2_4:51926453-51926472 | None:intergenic | 25.0% |
| ! | GACTTGTATCAAGTAAAATA+AGG | + | chr2_4:51926590-51926609 | None:intergenic | 25.0% |
| !! | AGTTTTCTATCTTCTCTATA+TGG | + | chr2_4:51926685-51926704 | None:intergenic | 25.0% |
| ! | AAAACAGTGAAGAAAGATAA+AGG | + | chr2_4:51926719-51926738 | None:intergenic | 25.0% |
| ! | TAAGTTGTTTATCTTAGTTG+AGG | + | chr2_4:51927450-51927469 | None:intergenic | 25.0% |
| ! | GGATGAAATTCAATAAATGA+GGG | + | chr2_4:51927670-51927689 | None:intergenic | 25.0% |
| ! | TGGATGAAATTCAATAAATG+AGG | + | chr2_4:51927671-51927690 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | - | chr2_4:51927701-51927720 | Msa0333850:CDS | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | - | chr2_4:51927702-51927721 | Msa0333850:CDS | 25.0% |
| ! | CTCTAAATAATAGTCGTTTA+AGG | + | chr2_4:51927802-51927821 | None:intergenic | 25.0% |
| ! | AAACGACTATTATTTAGAGA+CGG | - | chr2_4:51927803-51927822 | Msa0333850:intron | 25.0% |
| ! | TAAACACTTATGAAACTGTT+TGG | + | chr2_4:51927934-51927953 | None:intergenic | 25.0% |
| !!! | AAAATGGATAGTCTTATACA+CGG | + | chr2_4:51928051-51928070 | None:intergenic | 25.0% |
| !!! | ATCCATTTTGTTATGTATGT+AGG | - | chr2_4:51928062-51928081 | Msa0333850:intron | 25.0% |
| !!! | ATATACATTTTTCAGTTAGG+AGG | - | chr2_4:51928170-51928189 | Msa0333850:intron | 25.0% |
| !! | ATGAAATGTTTCTATTTCCA+TGG | + | chr2_4:51928332-51928351 | None:intergenic | 25.0% |
| ! | TGGAAATAGAAACATTTCAT+CGG | - | chr2_4:51928332-51928351 | Msa0333850:intron | 25.0% |
| ! | CCATTCAAATATTCTCTTAA+GGG | + | chr2_4:51928445-51928464 | None:intergenic | 25.0% |
| ! | ACCATTCAAATATTCTCTTA+AGG | + | chr2_4:51928446-51928465 | None:intergenic | 25.0% |
| ! | TTAAGAGAATATTTGAATGG+TGG | - | chr2_4:51928445-51928464 | Msa0333850:intron | 25.0% |
| ! | AGTATGCAACATAAGTTAAA+GGG | + | chr2_4:51928488-51928507 | None:intergenic | 25.0% |
| ! | AAGTATGCAACATAAGTTAA+AGG | + | chr2_4:51928489-51928508 | None:intergenic | 25.0% |
| TTATCTACTGACATAAGCAA+TGG | + | chr2_4:51924954-51924973 | None:intergenic | 30.0% | |
| CTAACAAGTATTTATGACAG+TGG | - | chr2_4:51925237-51925256 | Msa0333850:intron | 30.0% | |
| TTATCCTTCAATCTAAACAC+GGG | + | chr2_4:51925383-51925402 | None:intergenic | 30.0% | |
| !! | AATTCAATCCTTTGAGTTGA+AGG | + | chr2_4:51925421-51925440 | None:intergenic | 30.0% |
| TATCTTCAATTGTCAAGTGA+TGG | - | chr2_4:51925440-51925459 | Msa0333850:intron | 30.0% | |
| ATCTTCAATTGTCAAGTGAT+GGG | - | chr2_4:51925441-51925460 | Msa0333850:intron | 30.0% | |
| GTTTATGACTTCCTAGAATT+TGG | - | chr2_4:51925646-51925665 | Msa0333850:intron | 30.0% | |
| CAGTACAAACTATTCAAATC+CGG | + | chr2_4:51925843-51925862 | None:intergenic | 30.0% | |
| ! | TCACAATTTTAGATACCTCT+TGG | - | chr2_4:51925918-51925937 | Msa0333850:intron | 30.0% |
| AATAGATATGATCTGTGTTG+TGG | - | chr2_4:51926066-51926085 | Msa0333850:intron | 30.0% | |
| ! | TCTTTTCTGCATGCAAATAT+TGG | - | chr2_4:51926173-51926192 | Msa0333850:intron | 30.0% |
| TGTTACTCCTTAAATTCAGT+TGG | - | chr2_4:51926296-51926315 | Msa0333850:CDS | 30.0% | |
| TAAATTGCAAGATATCTTCG+AGG | + | chr2_4:51926347-51926366 | None:intergenic | 30.0% | |
| TCTATATGGAAAACCAAGAT+AGG | + | chr2_4:51926671-51926690 | None:intergenic | 30.0% | |
| ! | GTTTTTCTAATGAGCTGTAA+TGG | - | chr2_4:51926734-51926753 | Msa0333850:CDS | 30.0% |
| TATGGATGTGACTTATAGAT+GGG | - | chr2_4:51927133-51927152 | Msa0333850:intron | 30.0% | |
| TATTTCTCATGCAGCTTATT+GGG | - | chr2_4:51927196-51927215 | Msa0333850:intron | 30.0% | |
| AAGAGACAATTATTGTGAGA+CGG | + | chr2_4:51927568-51927587 | None:intergenic | 30.0% | |
| CCCTTATTAATTGTAGTTAG+TGG | + | chr2_4:51927705-51927724 | None:intergenic | 30.0% | |
| TCAAAAAAGTCAATCCAAAC+AGG | - | chr2_4:51927968-51927987 | Msa0333850:intron | 30.0% | |
| ATACACGGAATACAAAATTG+AGG | + | chr2_4:51928036-51928055 | None:intergenic | 30.0% | |
| TGCCTACATACATAACAAAA+TGG | + | chr2_4:51928067-51928086 | None:intergenic | 30.0% | |
| CCCTTAAGAGAATATTTGAA+TGG | - | chr2_4:51928442-51928461 | Msa0333850:intron | 30.0% | |
| GTATGCAACATAAGTTAAAG+GGG | + | chr2_4:51928487-51928506 | None:intergenic | 30.0% | |
| !! | TTGCATACTTTTGTTGTACA+TGG | - | chr2_4:51928499-51928518 | Msa0333850:intron | 30.0% |
| !! | TGCATACTTTTGTTGTACAT+GGG | - | chr2_4:51928500-51928519 | Msa0333850:intron | 30.0% |
| AAAAATCATCCATACAAGCA+AGG | + | chr2_4:51928552-51928571 | None:intergenic | 30.0% | |
| !!! | TGCTTGTATGGATGATTTTT+TGG | - | chr2_4:51928552-51928571 | Msa0333850:CDS | 30.0% |
| !!! | GCTTGTATGGATGATTTTTT+GGG | - | chr2_4:51928553-51928572 | Msa0333850:CDS | 30.0% |
| !!! | ATAGTTCATTTTGGGTTGTA+GGG | + | chr2_4:51928589-51928608 | None:intergenic | 30.0% |
| !!! | TATAGTTCATTTTGGGTTGT+AGG | + | chr2_4:51928590-51928609 | None:intergenic | 30.0% |
| ACCCAAAATGAACTATAATG+TGG | - | chr2_4:51928593-51928612 | Msa0333850:CDS | 30.0% | |
| ! | GCCACATTATAGTTCATTTT+GGG | + | chr2_4:51928597-51928616 | None:intergenic | 30.0% |
| ! | TGCCACATTATAGTTCATTT+TGG | + | chr2_4:51928598-51928617 | None:intergenic | 30.0% |
| TTACTCCAGATTCATTGTTT+CGG | + | chr2_4:51928720-51928739 | None:intergenic | 30.0% | |
| CCAGTTCCGCAAAAAAAAAT+TGG | + | chr2_4:51924390-51924409 | None:intergenic | 35.0% | |
| !!! | CCAATTTTTTTTTGCGGAAC+TGG | - | chr2_4:51924387-51924406 | Msa0333850:three_prime_UTR | 35.0% |
| GAGTGAATAAAAAGAAGACC+TGG | + | chr2_4:51924569-51924588 | None:intergenic | 35.0% | |
| AATAGGAAGTAGCTCATGTT+TGG | - | chr2_4:51924766-51924785 | Msa0333850:exon | 35.0% | |
| !! | CTTGTTTTCACAAGCTATCT+TGG | - | chr2_4:51924856-51924875 | Msa0333850:CDS | 35.0% |
| !! | TGTTTGGATTGGCTTATTTG+AGG | + | chr2_4:51924977-51924996 | None:intergenic | 35.0% |
| AGAAAGAAGAGACACAAACA+GGG | + | chr2_4:51925292-51925311 | None:intergenic | 35.0% | |
| AAGAAAGAAGAGACACAAAC+AGG | + | chr2_4:51925293-51925312 | None:intergenic | 35.0% | |
| !! | CTCTTCTTTCTTCTGAAATC+TGG | - | chr2_4:51925301-51925320 | Msa0333850:intron | 35.0% |
| ! | TTTTCTGGACATCTTTGAGT+CGG | + | chr2_4:51925537-51925556 | None:intergenic | 35.0% |
| ATCCATTTAATGGAAGGAAG+TGG | - | chr2_4:51925558-51925577 | Msa0333850:intron | 35.0% | |
| TGCTCATACTCACAAAACAT+TGG | + | chr2_4:51925603-51925622 | None:intergenic | 35.0% | |
| TATGAGCATATTCCCTTGAT+TGG | - | chr2_4:51925615-51925634 | Msa0333850:intron | 35.0% | |
| TTACACTTCACTCACTTTAG+AGG | + | chr2_4:51925674-51925693 | None:intergenic | 35.0% | |
| AGAAAGCAAAGTGAGCATTA+TGG | + | chr2_4:51925794-51925813 | None:intergenic | 35.0% | |
| GTTGTGTTGTGTATGTTACT+AGG | - | chr2_4:51926103-51926122 | Msa0333850:intron | 35.0% | |
| GTAAACAGTCTCATTGACAA+AGG | - | chr2_4:51926125-51926144 | Msa0333850:intron | 35.0% | |
| TCATTGACAAAGGACAACTT+TGG | - | chr2_4:51926135-51926154 | Msa0333850:intron | 35.0% | |
| TGCAAATATTGGACACCTAA+TGG | - | chr2_4:51926184-51926203 | Msa0333850:intron | 35.0% | |
| AATATTGGACACCTAATGGT+AGG | - | chr2_4:51926188-51926207 | Msa0333850:intron | 35.0% | |
| ! | GGAATTTCATTGGCTATTGT+AGG | + | chr2_4:51926408-51926427 | None:intergenic | 35.0% |
| TTGGAGGTAAGGAATTTCAT+TGG | + | chr2_4:51926418-51926437 | None:intergenic | 35.0% | |
| AAGATAGAAAACTGAGATGC+TGG | - | chr2_4:51926692-51926711 | Msa0333850:intron | 35.0% | |
| CTAATGAGCTGTAATGGTTT+AGG | - | chr2_4:51926740-51926759 | Msa0333850:CDS | 35.0% | |
| !! | TGTAATGGTTTAGGTTGGAT+CGG | - | chr2_4:51926749-51926768 | Msa0333850:CDS | 35.0% |
| ACAAGTAATTGCCCTCAATA+TGG | - | chr2_4:51926839-51926858 | Msa0333850:intron | 35.0% | |
| ACAGACACTTACCATATTGA+GGG | + | chr2_4:51926853-51926872 | None:intergenic | 35.0% | |
| !!! | TGTTAGTTTTGCAACTTCAC+TGG | - | chr2_4:51926892-51926911 | Msa0333850:intron | 35.0% |
| GTAAAATTTCTGTTCCACTG+TGG | + | chr2_4:51926962-51926981 | None:intergenic | 35.0% | |
| TAACTTAGACGATCACTCTA+TGG | - | chr2_4:51927115-51927134 | Msa0333850:intron | 35.0% | |
| CTATGGATGTGACTTATAGA+TGG | - | chr2_4:51927132-51927151 | Msa0333850:intron | 35.0% | |
| TTTCCTTGTCTGTGTTCTAA+CGG | - | chr2_4:51927167-51927186 | Msa0333850:intron | 35.0% | |
| GTATTTCTCATGCAGCTTAT+TGG | - | chr2_4:51927195-51927214 | Msa0333850:intron | 35.0% | |
| CTTATTGGGTTATCATCAAC+TGG | - | chr2_4:51927210-51927229 | Msa0333850:intron | 35.0% | |
| AAGGGCAGTAAAAAAATCCA+TGG | + | chr2_4:51927276-51927295 | None:intergenic | 35.0% | |
| CCTTTGTTCAGTAAAAGTTG+CGG | - | chr2_4:51927317-51927336 | Msa0333850:intron | 35.0% | |
| CTTTGTTCAGTAAAAGTTGC+GGG | - | chr2_4:51927318-51927337 | Msa0333850:intron | 35.0% | |
| !!! | TTTTAAAATGTGGCATGACC+TGG | - | chr2_4:51927384-51927403 | Msa0333850:intron | 35.0% |
| AGTTAGTGGAGTAGTTAAGT+TGG | + | chr2_4:51927691-51927710 | None:intergenic | 35.0% | |
| AGGTTTATGCACGGTTATTA+AGG | + | chr2_4:51927782-51927801 | None:intergenic | 35.0% | |
| ! | AGTCGTTTAAGGTTTATGCA+CGG | + | chr2_4:51927791-51927810 | None:intergenic | 35.0% |
| GACTATTATTTAGAGACGGA+GGG | - | chr2_4:51927807-51927826 | Msa0333850:intron | 35.0% | |
| TTTCTATCATGATGAGCTTG+TGG | - | chr2_4:51927855-51927874 | Msa0333850:intron | 35.0% | |
| AACAAGCTGATGACAACTTA+TGG | - | chr2_4:51927879-51927898 | Msa0333850:intron | 35.0% | |
| GAAACTGTTTGGAAGACTTA+TGG | + | chr2_4:51927923-51927942 | None:intergenic | 35.0% | |
| !! | ACATAGTTTTTAGGCCTGTT+TGG | + | chr2_4:51927985-51928004 | None:intergenic | 35.0% |
| AAACAGGCCTAAAAACTATG+TGG | - | chr2_4:51927984-51928003 | Msa0333850:intron | 35.0% | |
| ! | TCCATGTCCACATAGTTTTT+AGG | + | chr2_4:51927994-51928013 | None:intergenic | 35.0% |
| ! | TTTGTTATGTATGTAGGCAC+TGG | - | chr2_4:51928068-51928087 | Msa0333850:intron | 35.0% |
| AAACTATGCACAGATTACAC+TGG | + | chr2_4:51928122-51928141 | None:intergenic | 35.0% | |
| CATGAATCCACATCTTTAGA+TGG | - | chr2_4:51928242-51928261 | Msa0333850:intron | 35.0% | |
| TCTTCTTCCATCTAAAGATG+TGG | + | chr2_4:51928252-51928271 | None:intergenic | 35.0% | |
| AATCTCTTCAAGATTACGAG+AGG | - | chr2_4:51928299-51928318 | Msa0333850:intron | 35.0% | |
| ! | TGTTTCTATTTCCATGGCTT+AGG | + | chr2_4:51928326-51928345 | None:intergenic | 35.0% |
| CATAAGTTAAAGGGGTTTCA+GGG | + | chr2_4:51928479-51928498 | None:intergenic | 35.0% | |
| ACATAAGTTAAAGGGGTTTC+AGG | + | chr2_4:51928480-51928499 | None:intergenic | 35.0% | |
| !! | GCATACTTTTGTTGTACATG+GGG | - | chr2_4:51928501-51928520 | Msa0333850:intron | 35.0% |
| !! | GTTTGTTTTCCTTGCTTGTA+TGG | - | chr2_4:51928540-51928559 | Msa0333850:CDS | 35.0% |
| !!! | ATGGATGATTTTTTGGGTCT+AGG | - | chr2_4:51928559-51928578 | Msa0333850:CDS | 35.0% |
| AGATTCATTGTTTCGGATGT+TGG | + | chr2_4:51928713-51928732 | None:intergenic | 35.0% | |
| AACATCCGAAACAATGAATC+TGG | - | chr2_4:51928712-51928731 | Msa0333850:five_prime_UTR | 35.0% | |
| !!! | TTTTTTTGCGGAACTGGAGA+AGG | - | chr2_4:51924393-51924412 | Msa0333850:three_prime_UTR | 40.0% |
| !!! | TTTTTTGCGGAACTGGAGAA+GGG | - | chr2_4:51924394-51924413 | Msa0333850:three_prime_UTR | 40.0% |
| GCAATGATATCAAGTGGGTA+AGG | + | chr2_4:51924471-51924490 | None:intergenic | 40.0% | |
| AACGAAGTAGAAAGTGAAGG+CGG | + | chr2_4:51924539-51924558 | None:intergenic | 40.0% | |
| AGGAACGAAGTAGAAAGTGA+AGG | + | chr2_4:51924542-51924561 | None:intergenic | 40.0% | |
| TAAAAAGAAGACCTGGAGAC+AGG | + | chr2_4:51924562-51924581 | None:intergenic | 40.0% | |
| AGACTGTTTGAGAGAGCTTA+TGG | + | chr2_4:51925176-51925195 | None:intergenic | 40.0% | |
| !! | CTTCTGAAATCTGGATGTTG+CGG | - | chr2_4:51925310-51925329 | Msa0333850:intron | 40.0% |
| CAAAGATGCCTTCAACTCAA+AGG | - | chr2_4:51925410-51925429 | Msa0333850:intron | 40.0% | |
| GTCCACTTCCTTCCATTAAA+TGG | + | chr2_4:51925563-51925582 | None:intergenic | 40.0% | |
| ! | CTTTAGAGGAGCCAAATTCT+AGG | + | chr2_4:51925660-51925679 | None:intergenic | 40.0% |
| AGTGGGACCAACTGAATTTA+AGG | + | chr2_4:51926306-51926325 | None:intergenic | 40.0% | |
| TCAAACGTACTTGTCTCTCT+TGG | - | chr2_4:51926642-51926661 | Msa0333850:intron | 40.0% | |
| TCTCTCTTGGATTCCTATCT+TGG | - | chr2_4:51926655-51926674 | Msa0333850:intron | 40.0% | |
| TGAGCTGTAATGGTTTAGGT+TGG | - | chr2_4:51926744-51926763 | Msa0333850:CDS | 40.0% | |
| TTAAGGCACAAAGACCTTGT+AGG | - | chr2_4:51926786-51926805 | Msa0333850:CDS | 40.0% | |
| !!! | CTTTTTTACCACCTCCTACA+AGG | + | chr2_4:51926803-51926822 | None:intergenic | 40.0% |
| CACAGACACTTACCATATTG+AGG | + | chr2_4:51926854-51926873 | None:intergenic | 40.0% | |
| !! | TTGTTCGGTAGAAGTGTTGT+TGG | - | chr2_4:51927055-51927074 | Msa0333850:intron | 40.0% |
| !! | AAGTGTTGTTGGTTCATGCA+AGG | - | chr2_4:51927066-51927085 | Msa0333850:intron | 40.0% |
| !! | AGTGTTGTTGGTTCATGCAA+GGG | - | chr2_4:51927067-51927086 | Msa0333850:intron | 40.0% |
| !! | ATCAACTGGCATTGACAACT+GGG | - | chr2_4:51927224-51927243 | Msa0333850:intron | 40.0% |
| ! | CCGCAACTTTTACTGAACAA+AGG | + | chr2_4:51927320-51927339 | None:intergenic | 40.0% |
| ! | CTCGAATTTAGAGTCATTCC+AGG | + | chr2_4:51927405-51927424 | None:intergenic | 40.0% |
| GACAATTATTGTGAGACGGA+GGG | + | chr2_4:51927564-51927583 | None:intergenic | 40.0% | |
| AGACAATTATTGTGAGACGG+AGG | + | chr2_4:51927565-51927584 | None:intergenic | 40.0% | |
| CGACTATTATTTAGAGACGG+AGG | - | chr2_4:51927806-51927825 | Msa0333850:intron | 40.0% | |
| GCCTAAAAACTATGTGGACA+TGG | - | chr2_4:51927990-51928009 | Msa0333850:intron | 40.0% | |
| TTTCAGTTAGGAGGCTTGAT+TGG | - | chr2_4:51928179-51928198 | Msa0333850:intron | 40.0% | |
| ATTGCTGCATCATGGCTTAT+TGG | - | chr2_4:51928206-51928225 | Msa0333850:intron | 40.0% | |
| GAAACATTTCATCGGCCTAT+TGG | - | chr2_4:51928340-51928359 | Msa0333850:intron | 40.0% | |
| CTTAAGGGAAGCTTACAACA+GGG | + | chr2_4:51928430-51928449 | None:intergenic | 40.0% | |
| TCTTAAGGGAAGCTTACAAC+AGG | + | chr2_4:51928431-51928450 | None:intergenic | 40.0% | |
| !! | GTTTTTCAGAATGGTAGCGA+AGG | + | chr2_4:51928642-51928661 | None:intergenic | 40.0% |
| !!! | GTGGGATTGGTTTTTCAGAA+TGG | + | chr2_4:51928651-51928670 | None:intergenic | 40.0% |
| AATGATGTTGAATTCCCACC+CGG | + | chr2_4:51928688-51928707 | None:intergenic | 40.0% | |
| TTGCAAACCGGTGACAGAAA+TGG | + | chr2_4:51924441-51924460 | None:intergenic | 45.0% | |
| !! | ATTTCTGTCACCGGTTTGCA+AGG | - | chr2_4:51924440-51924459 | Msa0333850:three_prime_UTR | 45.0% |
| CGGTGGCAATGATATCAAGT+GGG | + | chr2_4:51924476-51924495 | None:intergenic | 45.0% | |
| CAAGAGAGACATGTGAGTCA+AGG | + | chr2_4:51925343-51925362 | None:intergenic | 45.0% | |
| TGCTCCCGTGTTTAGATTGA+AGG | - | chr2_4:51925376-51925395 | Msa0333850:intron | 45.0% | |
| CTCACAAAACATTGGCAGCA+AGG | + | chr2_4:51925595-51925614 | None:intergenic | 45.0% | |
| CAATAAGCACTCTCACCAAG+AGG | + | chr2_4:51925936-51925955 | None:intergenic | 45.0% | |
| CAGGCATGACAGAACAAACT+TGG | + | chr2_4:51926231-51926250 | None:intergenic | 45.0% | |
| ! | CAAGTTTGTTCTGTCATGCC+TGG | - | chr2_4:51926229-51926248 | Msa0333850:intron | 45.0% |
| AAATTCAGTTGGTCCCACTG+TGG | - | chr2_4:51926307-51926326 | Msa0333850:CDS | 45.0% | |
| GCGGTTACTTGCAATTGAAG+AGG | + | chr2_4:51926375-51926394 | None:intergenic | 45.0% | |
| CAGGTGCAGCTATGAGTTAT+TGG | - | chr2_4:51926468-51926487 | Msa0333850:intron | 45.0% | |
| !!! | CGGTTGCGGTGTTTGTTTTA+AGG | - | chr2_4:51926769-51926788 | Msa0333850:CDS | 45.0% |
| AGTTATCACGAGACAGTGTG+TGG | - | chr2_4:51926919-51926938 | Msa0333850:CDS | 45.0% | |
| ! | ATGCTTCTGATTAGCCACAG+TGG | - | chr2_4:51926945-51926964 | Msa0333850:CDS | 45.0% |
| GGTTCATGCAAGGGTTATGT+CGG | - | chr2_4:51927076-51927095 | Msa0333850:CDS | 45.0% | |
| GTTCATGCAAGGGTTATGTC+GGG | - | chr2_4:51927077-51927096 | Msa0333850:CDS | 45.0% | |
| !! | CATCAACTGGCATTGACAAC+TGG | - | chr2_4:51927223-51927242 | Msa0333850:intron | 45.0% |
| !! | TCAACTGGCATTGACAACTG+GGG | - | chr2_4:51927225-51927244 | Msa0333850:intron | 45.0% |
| AACTGGGGACATGTAAGTGT+AGG | - | chr2_4:51927240-51927259 | Msa0333850:intron | 45.0% | |
| ! | GTGTAGGAGTGTATCATCCA+TGG | - | chr2_4:51927256-51927275 | Msa0333850:intron | 45.0% |
| TTGGTGGAATTGCTGCATCA+TGG | - | chr2_4:51928198-51928217 | Msa0333850:intron | 45.0% | |
| GCTTGCGCTTGTAATCCAAT+AGG | + | chr2_4:51928358-51928377 | None:intergenic | 45.0% | |
| TCTGAAAAACCAATCCCACC+TGG | - | chr2_4:51928652-51928671 | Msa0333850:CDS | 45.0% | |
| ACCGGTGACAGAAATGGCTT+GGG | + | chr2_4:51924435-51924454 | None:intergenic | 50.0% | |
| AACCGGTGACAGAAATGGCT+TGG | + | chr2_4:51924436-51924455 | None:intergenic | 50.0% | |
| TAAGGACCCACCTTGCAAAC+CGG | + | chr2_4:51924453-51924472 | None:intergenic | 50.0% | |
| GCGGTGGCAATGATATCAAG+TGG | + | chr2_4:51924477-51924496 | None:intergenic | 50.0% | |
| GTAGAAAGTGAAGGCGGAGA+CGG | + | chr2_4:51924533-51924552 | None:intergenic | 50.0% | |
| TCTACTTCGTTCCTGTCTCC+AGG | - | chr2_4:51924548-51924567 | Msa0333850:three_prime_UTR | 50.0% | |
| GTTGCTCGCTTCAAATGAGC+CGG | - | chr2_4:51925821-51925840 | Msa0333850:intron | 50.0% | |
| CCACGACAAAAGCTTGCCTT+GGG | + | chr2_4:51926009-51926028 | None:intergenic | 50.0% | |
| ! | CCAAGGCAAGCTTTTGTCGT+GGG | - | chr2_4:51926007-51926026 | Msa0333850:intron | 50.0% |
| ! | CAAGGCAAGCTTTTGTCGTG+GGG | - | chr2_4:51926008-51926027 | Msa0333850:intron | 50.0% |
| CCACTAAAGCTCTCCACAGT+GGG | + | chr2_4:51926323-51926342 | None:intergenic | 50.0% | |
| ACCACTAAAGCTCTCCACAG+TGG | + | chr2_4:51926324-51926343 | None:intergenic | 50.0% | |
| TTCTGCAAAATGCCCGCAGT+AGG | - | chr2_4:51926491-51926510 | Msa0333850:intron | 50.0% | |
| ! | GGTGCGTCAGGAGCAATTTT+TGG | - | chr2_4:51926512-51926531 | Msa0333850:intron | 50.0% |
| !! | GGTTTAGGTTGGATCGGTTG+CGG | - | chr2_4:51926755-51926774 | Msa0333850:CDS | 50.0% |
| AGGCACAAAGACCTTGTAGG+AGG | - | chr2_4:51926789-51926808 | Msa0333850:CDS | 50.0% | |
| CACAAAGACCTTGTAGGAGG+TGG | - | chr2_4:51926792-51926811 | Msa0333850:CDS | 50.0% | |
| GCACCGTTAGAACACAGACA+AGG | + | chr2_4:51927173-51927192 | None:intergenic | 50.0% | |
| CAGTTAGGAGGCTTGATTGG+TGG | - | chr2_4:51928182-51928201 | Msa0333850:intron | 50.0% | |
| CATGGCTTATTGGACCTGCA+TGG | - | chr2_4:51928216-51928235 | Msa0333850:intron | 50.0% | |
| GTGGATTCATGCTTCCATGC+AGG | + | chr2_4:51928233-51928252 | None:intergenic | 50.0% | |
| TTACGAGAGGACCTAAGCCA+TGG | - | chr2_4:51928312-51928331 | Msa0333850:intron | 50.0% | |
| GCCCAAGCCATTTCTGTCAC+CGG | - | chr2_4:51924431-51924450 | Msa0333850:three_prime_UTR | 55.0% | |
| !! | TCTGTCACCGGTTTGCAAGG+TGG | - | chr2_4:51924443-51924462 | Msa0333850:three_prime_UTR | 55.0% |
| !! | CTGTCACCGGTTTGCAAGGT+GGG | - | chr2_4:51924444-51924463 | Msa0333850:three_prime_UTR | 55.0% |
| GACACGGTGGCTGAAATGGA+GGG | + | chr2_4:51924505-51924524 | None:intergenic | 55.0% | |
| AGACACGGTGGCTGAAATGG+AGG | + | chr2_4:51924506-51924525 | None:intergenic | 55.0% | |
| AAAGTGAAGGCGGAGACGGT+GGG | + | chr2_4:51924529-51924548 | None:intergenic | 55.0% | |
| ! | GCATTTCCAGAGCTGGCTTC+AGG | + | chr2_4:51925515-51925534 | None:intergenic | 55.0% |
| TGAGTCGGCATTTCCAGAGC+TGG | + | chr2_4:51925522-51925541 | None:intergenic | 55.0% | |
| GTTGCGCAACTTGCAACCCA+AGG | - | chr2_4:51925990-51926009 | Msa0333850:intron | 55.0% | |
| ! | CCCAAGGCAAGCTTTTGTCG+TGG | - | chr2_4:51926006-51926025 | Msa0333850:intron | 55.0% |
| CCCACGACAAAAGCTTGCCT+TGG | + | chr2_4:51926010-51926029 | None:intergenic | 55.0% | |
| ! | GCTTTTGTCGTGGGGAGCAA+AGG | - | chr2_4:51926016-51926035 | Msa0333850:intron | 55.0% |
| TGTCGTGGGGAGCAAAGGTA+AGG | - | chr2_4:51926021-51926040 | Msa0333850:intron | 55.0% | |
| ! | CCCACTGTGGAGAGCTTTAG+TGG | - | chr2_4:51926320-51926339 | Msa0333850:CDS | 55.0% |
| TGTTGAATTCCCACCCGGAG+CGG | + | chr2_4:51928683-51928702 | None:intergenic | 55.0% | |
| GTGGCTGAAATGGAGGGACG+CGG | + | chr2_4:51924499-51924518 | None:intergenic | 60.0% | |
| GGGAGACACGGTGGCTGAAA+TGG | + | chr2_4:51924509-51924528 | None:intergenic | 60.0% | |
| GAAAGTGAAGGCGGAGACGG+TGG | + | chr2_4:51924530-51924549 | None:intergenic | 60.0% | |
| GGAAGACCTGAAGCCAGCTC+TGG | - | chr2_4:51925506-51925525 | Msa0333850:intron | 60.0% | |
| TGCTCCTGACGCACCTACTG+CGG | + | chr2_4:51926507-51926526 | None:intergenic | 60.0% | |
| GCTGAAATGGAGGGACGCGG+CGG | + | chr2_4:51924496-51924515 | None:intergenic | 65.0% | |
| ATGCCCGCAGTAGGTGCGTC+AGG | - | chr2_4:51926500-51926519 | Msa0333850:intron | 65.0% | |
| GCTCCTGACGCACCTACTGC+GGG | + | chr2_4:51926506-51926525 | None:intergenic | 65.0% | |
| GCGGTGCATCCAGGTGGGAT+TGG | + | chr2_4:51928664-51928683 | None:intergenic | 65.0% | |
| GAAATGGAGGGACGCGGCGG+TGG | + | chr2_4:51924493-51924512 | None:intergenic | 70.0% | |
| GGAGACGGTGGGAGACACGG+TGG | + | chr2_4:51924518-51924537 | None:intergenic | 70.0% | |
| GGCGGAGACGGTGGGAGACA+CGG | + | chr2_4:51924521-51924540 | None:intergenic | 70.0% | |
| CCGGAGCGGTGCATCCAGGT+GGG | + | chr2_4:51928669-51928688 | None:intergenic | 70.0% | |
| CCCACCTGGATGCACCGCTC+CGG | - | chr2_4:51928666-51928685 | Msa0333850:CDS | 70.0% | |
| CCACCTGGATGCACCGCTCC+GGG | - | chr2_4:51928667-51928686 | Msa0333850:CDS | 70.0% | |
| CTGGATGCACCGCTCCGGGT+GGG | - | chr2_4:51928671-51928690 | Msa0333850:exon | 70.0% | |
| CCCGGAGCGGTGCATCCAGG+TGG | + | chr2_4:51928670-51928689 | None:intergenic | 75.0% | |
| CCACCCGGAGCGGTGCATCC+AGG | + | chr2_4:51928673-51928692 | None:intergenic | 75.0% | |
| CCTGGATGCACCGCTCCGGG+TGG | - | chr2_4:51928670-51928689 | Msa0333850:exon | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 51924358 | 51928751 | 51924358 | ID=Msa0333850;Name=Msa0333850 |
| chr2_4 | mRNA | 51924358 | 51928751 | 51924358 | ID=Msa0333850-mRNA-1;Parent=Msa0333850;Name=Msa0333850-mRNA-1;_AED=0.10;_eAED=0.10;_QI=65|1|1|1|1|1|9|411|327 |
| chr2_4 | exon | 51924358 | 51924924 | 51924358 | ID=Msa0333850-mRNA-1:exon:15619;Parent=Msa0333850-mRNA-1 |
| chr2_4 | exon | 51925858 | 51925899 | 51925858 | ID=Msa0333850-mRNA-1:exon:15618;Parent=Msa0333850-mRNA-1 |
| chr2_4 | exon | 51926249 | 51926347 | 51926249 | ID=Msa0333850-mRNA-1:exon:15617;Parent=Msa0333850-mRNA-1 |
| chr2_4 | exon | 51926571 | 51926638 | 51926571 | ID=Msa0333850-mRNA-1:exon:15616;Parent=Msa0333850-mRNA-1 |
| chr2_4 | exon | 51926723 | 51926819 | 51926723 | ID=Msa0333850-mRNA-1:exon:15615;Parent=Msa0333850-mRNA-1 |
| chr2_4 | exon | 51926904 | 51926984 | 51926904 | ID=Msa0333850-mRNA-1:exon:15614;Parent=Msa0333850-mRNA-1 |
| chr2_4 | exon | 51927072 | 51927126 | 51927072 | ID=Msa0333850-mRNA-1:exon:15613;Parent=Msa0333850-mRNA-1 |
| chr2_4 | exon | 51927500 | 51927738 | 51927500 | ID=Msa0333850-mRNA-1:exon:15612;Parent=Msa0333850-mRNA-1 |
| chr2_4 | exon | 51928540 | 51928751 | 51928540 | ID=Msa0333850-mRNA-1:exon:15611;Parent=Msa0333850-mRNA-1 |
| chr2_4 | five_prime_UTR | 51928687 | 51928751 | 51928687 | ID=Msa0333850-mRNA-1:five_prime_utr;Parent=Msa0333850-mRNA-1 |
| chr2_4 | CDS | 51928540 | 51928686 | 51928540 | ID=Msa0333850-mRNA-1:cds;Parent=Msa0333850-mRNA-1 |
| chr2_4 | CDS | 51927500 | 51927738 | 51927500 | ID=Msa0333850-mRNA-1:cds;Parent=Msa0333850-mRNA-1 |
| chr2_4 | CDS | 51927072 | 51927126 | 51927072 | ID=Msa0333850-mRNA-1:cds;Parent=Msa0333850-mRNA-1 |
| chr2_4 | CDS | 51926904 | 51926984 | 51926904 | ID=Msa0333850-mRNA-1:cds;Parent=Msa0333850-mRNA-1 |
| chr2_4 | CDS | 51926723 | 51926819 | 51926723 | ID=Msa0333850-mRNA-1:cds;Parent=Msa0333850-mRNA-1 |
| chr2_4 | CDS | 51926571 | 51926638 | 51926571 | ID=Msa0333850-mRNA-1:cds;Parent=Msa0333850-mRNA-1 |
| chr2_4 | CDS | 51926249 | 51926347 | 51926249 | ID=Msa0333850-mRNA-1:cds;Parent=Msa0333850-mRNA-1 |
| chr2_4 | CDS | 51925858 | 51925899 | 51925858 | ID=Msa0333850-mRNA-1:cds;Parent=Msa0333850-mRNA-1 |
| chr2_4 | CDS | 51924769 | 51924924 | 51924769 | ID=Msa0333850-mRNA-1:cds;Parent=Msa0333850-mRNA-1 |
| chr2_4 | three_prime_UTR | 51924358 | 51924768 | 51924358 | ID=Msa0333850-mRNA-1:three_prime_utr;Parent=Msa0333850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
