AlfalfaGEDB | Msa0333850

M. sativa cultivar zhongmu-4 / Msa0333850

KEGG: -
GO: GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009941 GO:0009987 GO:0010026 GO:0010154 GO:0016020 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564
PFAM: PF01694.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0333850	PNX94886.1	90.214	327	32	0	1	327	1	327	0.0	614

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0333850	sp\|F4ICF4\|RBL10_ARATH	56.863	306	117	3	23	313	25	330	1.80e-117	345

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010490	Msa0333850	-0.823836	1.117917e-53	-8.615850e-47
Msa0036540	Msa0333850	-0.816170	6.349506e-52	-8.615850e-47
Msa0071250	Msa0333850	-0.835245	1.876912e-56	-8.615850e-47
Msa0090510	Msa0333850	-0.816801	4.586246e-52	-8.615850e-47
Msa0100290	Msa0333850	-0.805550	1.264785e-49	-8.615850e-47
Msa0144530	Msa0333850	-0.808089	3.676427e-50	-8.615850e-47
Msa0183910	Msa0333850	-0.814682	1.360327e-51	-8.615850e-47
Msa0187490	Msa0333850	-0.804254	2.359560e-49	-8.615850e-47
Msa0216850	Msa0333850	0.910037	2.930452e-82	-8.615850e-47
Msa0233370	Msa0333850	-0.808389	3.172926e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0333850	MtrunA17_Chr2g0318441	95.719	327	14	0	1	327	1	327	0.0	596
Msa0333850	MtrunA17_Chr6g0457251	31.928	166	110	2	144	306	206	371	6.72e-20	89.7
Msa0333850	MtrunA17_Chr6g0472501	31.677	161	104	3	133	292	94	249	5.59e-13	68.6
Msa0333850	MtrunA17_Chr2g0332941	29.452	146	96	3	151	290	103	247	2.69e-11	63.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0333850	AT1G25290.2	58.528	299	116	2	23	313	25	323	8.96e-122	353
Msa0333850	AT1G25290.1	56.863	306	117	3	23	313	25	330	1.83e-118	345
Msa0333850	AT5G38510.2	32.258	155	104	1	142	295	216	370	8.99e-17	81.3
Msa0333850	AT5G38510.3	32.258	155	104	1	142	295	216	370	8.99e-17	81.3
Msa0333850	AT5G38510.1	32.258	155	104	1	142	295	216	370	8.99e-17	81.3
Msa0333850	AT1G77860.1	32.558	172	107	5	142	310	111	276	2.59e-15	76.3
Msa0333850	AT1G77860.2	32.558	172	107	5	142	310	111	276	2.97e-15	76.3
Msa0333850	AT1G63120.1	30.380	158	106	3	151	305	104	260	4.01e-13	69.3
Msa0333850	AT5G07250.1	32.168	143	95	2	149	290	126	267	1.99e-12	67.8
Msa0333850	AT2G29050.1	30.719	153	102	3	147	296	119	270	2.75e-12	67.4

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Find 115 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGAAGGCGGAGACGGT+GGG	0.654962	2_4:+51928561	None:intergenic
AAATTCAGTTGGTCCCACTG+TGG	0.708926	2_4:-51926780	Msa0333850:CDS
AACATCCGAAACAATGAATC+TGG	0.390583	2_4:-51924375	Msa0333850:three_prime_UTR
AACCGGTGACAGAAATGGCT+TGG	0.460775	2_4:+51928654	None:intergenic
AACGAAGTAGAAAGTGAAGG+CGG	0.666662	2_4:+51928551	None:intergenic
AAGTATGCAACATAAGTTAA+AGG	0.285351	2_4:+51924601	None:intergenic
AATCTCTTCAAGATTACGAG+AGG	0.669871	2_4:-51924788	Msa0333850:CDS
AATGATGTTGAATTCCCACC+CGG	0.626961	2_4:+51924402	None:intergenic
AATTCAATCCTTTGAGTTGA+AGG	0.377772	2_4:+51927669	None:intergenic
ACAAGTAATTGCCCTCAATA+TGG	0.389857	2_4:-51926248	Msa0333850:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATCTACTGACATAAGCAA+TGG	+	chr2_4:51924954-51924973	None:intergenic	30.0%
CTAACAAGTATTTATGACAG+TGG	-	chr2_4:51925237-51925256	Msa0333850:intron	30.0%
TTATCCTTCAATCTAAACAC+GGG	+	chr2_4:51925383-51925402	None:intergenic	30.0%
TATCTTCAATTGTCAAGTGA+TGG	-	chr2_4:51925440-51925459	Msa0333850:intron	30.0%
ATCTTCAATTGTCAAGTGAT+GGG	-	chr2_4:51925441-51925460	Msa0333850:intron	30.0%
GTTTATGACTTCCTAGAATT+TGG	-	chr2_4:51925646-51925665	Msa0333850:intron	30.0%
CAGTACAAACTATTCAAATC+CGG	+	chr2_4:51925843-51925862	None:intergenic	30.0%
AATAGATATGATCTGTGTTG+TGG	-	chr2_4:51926066-51926085	Msa0333850:intron	30.0%
TGTTACTCCTTAAATTCAGT+TGG	-	chr2_4:51926296-51926315	Msa0333850:CDS	30.0%
TAAATTGCAAGATATCTTCG+AGG	+	chr2_4:51926347-51926366	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	51924358	51928751	51924358	ID=Msa0333850;Name=Msa0333850
chr2_4	mRNA	51924358	51928751	51924358	ID=Msa0333850-mRNA-1;Parent=Msa0333850;Name=Msa0333850-mRNA-1;_AED=0.10;_eAED=0.10;_QI=65\|1\|1\|1\|1\|1\|9\|411\|327
chr2_4	exon	51924358	51924924	51924358	ID=Msa0333850-mRNA-1:exon:15619;Parent=Msa0333850-mRNA-1
chr2_4	exon	51925858	51925899	51925858	ID=Msa0333850-mRNA-1:exon:15618;Parent=Msa0333850-mRNA-1
chr2_4	exon	51926249	51926347	51926249	ID=Msa0333850-mRNA-1:exon:15617;Parent=Msa0333850-mRNA-1
chr2_4	exon	51926571	51926638	51926571	ID=Msa0333850-mRNA-1:exon:15616;Parent=Msa0333850-mRNA-1
chr2_4	exon	51926723	51926819	51926723	ID=Msa0333850-mRNA-1:exon:15615;Parent=Msa0333850-mRNA-1
chr2_4	exon	51926904	51926984	51926904	ID=Msa0333850-mRNA-1:exon:15614;Parent=Msa0333850-mRNA-1
chr2_4	exon	51927072	51927126	51927072	ID=Msa0333850-mRNA-1:exon:15613;Parent=Msa0333850-mRNA-1
chr2_4	exon	51927500	51927738	51927500	ID=Msa0333850-mRNA-1:exon:15612;Parent=Msa0333850-mRNA-1
chr2_4	exon	51928540	51928751	51928540	ID=Msa0333850-mRNA-1:exon:15611;Parent=Msa0333850-mRNA-1
chr2_4	five_prime_UTR	51928687	51928751	51928687	ID=Msa0333850-mRNA-1:five_prime_utr;Parent=Msa0333850-mRNA-1
chr2_4	CDS	51928540	51928686	51928540	ID=Msa0333850-mRNA-1:cds;Parent=Msa0333850-mRNA-1
chr2_4	CDS	51927500	51927738	51927500	ID=Msa0333850-mRNA-1:cds;Parent=Msa0333850-mRNA-1
chr2_4	CDS	51927072	51927126	51927072	ID=Msa0333850-mRNA-1:cds;Parent=Msa0333850-mRNA-1
chr2_4	CDS	51926904	51926984	51926904	ID=Msa0333850-mRNA-1:cds;Parent=Msa0333850-mRNA-1
chr2_4	CDS	51926723	51926819	51926723	ID=Msa0333850-mRNA-1:cds;Parent=Msa0333850-mRNA-1
chr2_4	CDS	51926571	51926638	51926571	ID=Msa0333850-mRNA-1:cds;Parent=Msa0333850-mRNA-1
chr2_4	CDS	51926249	51926347	51926249	ID=Msa0333850-mRNA-1:cds;Parent=Msa0333850-mRNA-1
chr2_4	CDS	51925858	51925899	51925858	ID=Msa0333850-mRNA-1:cds;Parent=Msa0333850-mRNA-1
chr2_4	CDS	51924769	51924924	51924769	ID=Msa0333850-mRNA-1:cds;Parent=Msa0333850-mRNA-1
chr2_4	three_prime_UTR	51924358	51924768	51924358	ID=Msa0333850-mRNA-1:three_prime_utr;Parent=Msa0333850-mRNA-1

Gene Sequence

>Msa0333850

ATGATTATGCCCAAGCCATTTCTGTCACCGGTTTGCAAGGTGGGTCCTTACCCACTTGATATCATTGCCACCGCCGCGTCCCTCCATTTCAGCCACCGTGTCTCCCACCGTCTCCGCCTTCACTTTCTACTTCGTTCCTGTCTCCAGAAACTTGCTCCCGTGTTTAGATTGAAGGATAAATGGTGTCAAAGATGCCTTCAACTCAAAGGATTGAATTATCTTCAATTGTCAAGTGATGGGTTGACTTCTGCATGTTCAGCTAGTTTCTCTTTTTTTAATGGAGGAAGACCTGAAGCCAGCTCTGGAAATGCCGACTCAAAGATGTCCAGAAAAAATCCATTTAATGGAAGGAAGTGGACAAATATTCTCCTTGCTGCCAATGTTTTATTTTATGTTGCGCAACTTGCAACCCAAGGCAAGCTTTTGTCGTGGGGAGCAAAGGTAAACAGTCTCATTGACAAAGGACAACTTTGGAGACTTGTTACATCTTCTTTTCTGCATGCAAATATTGGACACCTAATGATAAATTGTTACTCCTTAAATTCAGTTGGTCCCACTGTGGAGAGCTTTAGTGGTCCTCGAAGATATCTTGCAATTTACTTTGCCTCTTCAATTGCAAGTGCAGCTATGAGTTATTGGTTCTGCAAAATGCCCGCAGTAGGTGCGTCAGGAGCAATTTTTGGACTAGTTGGATCGGTTGCGGTGTTTGTTTTAAGGCACAAAGACCTTGTAGGAGGTGGTAAAAAAGATCTGCAGCACATTGCACAAGTAATTGCCCTCAATATGCTTATTGGGTTATCATCAACTGGCATTGACAACTGGGGACATTTAGGAGGCTTGATTGGTGGAATTGCTGCATCATGGCTTATTGGACCTGCATGGAAGCATGAATCCACATCTTTAGATGGAAGAAGACTTTTCATTGACAGTGCACCAATATATAATCTCTTCAAGATTACGAGAGGACCTAAGCCATGGAAATAG

Protein sequence

>Msa0333850

MIMPKPFLSPVCKVGPYPLDIIATAASLHFSHRVSHRLRLHFLLRSCLQKLAPVFRLKDKWCQRCLQLKGLNYLQLSSDGLTSACSASFSFFNGGRPEASSGNADSKMSRKNPFNGRKWTNILLAANVLFYVAQLATQGKLLSWGAKVNSLIDKGQLWRLVTSSFLHANIGHLMINCYSLNSVGPTVESFSGPRRYLAIYFASSIASAAMSYWFCKMPAVGASGAIFGLVGSVAVFVLRHKDLVGGGKKDLQHIAQVIALNMLIGLSSTGIDNWGHLGGLIGGIAASWLIGPAWKHESTSLDGRRLFIDSAPIYNLFKITRGPKPWK*