Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735560 | XP_024638993.1 | 99.270 | 274 | 2 | 0 | 46 | 319 | 1 | 274 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735560 | sp|P55871|IF2B_MALDO | 76.895 | 277 | 55 | 5 | 46 | 319 | 1 | 271 | 6.59e-141 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735560 | A0A396HW68 | 99.270 | 274 | 2 | 0 | 46 | 319 | 1 | 274 | 0.0 | 559 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029240 | Msa0735560 | 0.800112 | 1.678917e-48 | -8.615850e-47 |
| Msa0689260 | Msa0735560 | 0.835792 | 1.365151e-56 | -8.615850e-47 |
| Msa0715470 | Msa0735560 | 0.811019 | 8.632726e-51 | -8.615850e-47 |
| Msa0715700 | Msa0735560 | 0.821325 | 4.287753e-53 | -8.615850e-47 |
| Msa0735560 | Msa0790660 | -0.804869 | 1.755678e-49 | -8.615850e-47 |
| Msa0735560 | Msa0925250 | 0.810442 | 1.150610e-50 | -8.615850e-47 |
| Msa0735560 | Msa0925290 | 0.806029 | 1.003138e-49 | -8.615850e-47 |
| Msa0735560 | Msa0927380 | 0.809094 | 2.242655e-50 | -8.615850e-47 |
| Msa0735560 | Msa1075540 | 0.803107 | 4.082023e-49 | -8.615850e-47 |
| Msa0735560 | Msa1181250 | 0.810985 | 8.777876e-51 | -8.615850e-47 |
| Msa0735560 | Msa1181330 | 0.807393 | 5.167803e-50 | -8.615850e-47 |
| Msa0735560 | Msa1193290 | 0.812993 | 3.205867e-51 | -8.615850e-47 |
| Msa0735560 | Msa1358250 | 0.830658 | 2.594875e-55 | -8.615850e-47 |
| Msa0735560 | Msa1392780 | 0.851784 | 7.084412e-61 | -8.615850e-47 |
| Msa0406880 | Msa0735560 | 0.810092 | 1.368552e-50 | -8.615850e-47 |
| Msa0271530 | Msa0735560 | 0.831055 | 2.073534e-55 | -8.615850e-47 |
| Msa0279700 | Msa0735560 | 0.806118 | 9.608627e-50 | -8.615850e-47 |
| Msa0301070 | Msa0735560 | 0.801708 | 7.926212e-49 | -8.615850e-47 |
| Msa0350990 | Msa0735560 | 0.811268 | 7.622452e-51 | -8.615850e-47 |
| Msa0351030 | Msa0735560 | 0.812816 | 3.505302e-51 | -8.615850e-47 |
| Msa0562440 | Msa0735560 | 0.800190 | 1.618795e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735560 | MtrunA17_Chr5g0432801 | 99.270 | 274 | 2 | 0 | 46 | 319 | 1 | 274 | 0.0 | 559 |
| Msa0735560 | MtrunA17_Chr3g0107911 | 83.942 | 274 | 38 | 3 | 46 | 319 | 1 | 268 | 3.65e-149 | 419 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735560 | AT5G20920.3 | 72.794 | 272 | 66 | 3 | 46 | 315 | 1 | 266 | 2.39e-132 | 377 |
| Msa0735560 | AT5G20920.1 | 72.794 | 272 | 66 | 3 | 46 | 315 | 1 | 266 | 2.39e-132 | 377 |
| Msa0735560 | AT5G20920.2 | 72.794 | 272 | 65 | 4 | 46 | 315 | 1 | 265 | 6.01e-131 | 374 |
| Msa0735560 | AT3G07920.1 | 68.421 | 152 | 40 | 2 | 168 | 315 | 17 | 164 | 6.60e-68 | 210 |
| Msa0735560 | AT5G01940.2 | 55.634 | 142 | 58 | 3 | 164 | 304 | 72 | 209 | 2.31e-47 | 159 |
| Msa0735560 | AT5G01940.3 | 55.634 | 142 | 58 | 3 | 164 | 304 | 104 | 241 | 3.95e-47 | 159 |
| Msa0735560 | AT5G01940.1 | 51.875 | 160 | 68 | 4 | 164 | 316 | 72 | 229 | 3.49e-45 | 154 |
Find 74 sgRNAs with CRISPR-Local
Find 377 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTTCTTGCTTGCTGAAC+TGG | 0.152413 | 5_1:-50952241 | Msa0735560:CDS |
| AAGCAAGCATTGTTATTATA+TGG | 0.235147 | 5_1:-50949637 | Msa0735560:three_prime_UTR |
| AGAATTCCTTCAAAATTCTT+TGG | 0.293494 | 5_1:+50952162 | None:intergenic |
| TGGAGAGGCAGTTGAAGATT+TGG | 0.342163 | 5_1:-50953534 | Msa0735560:CDS |
| CTTTGCAGCCTCGTTATCCT+TGG | 0.346996 | 5_1:-50953336 | Msa0735560:CDS |
| TATTTGTGTTGAAATTGATT+AGG | 0.359799 | 5_1:-50951644 | Msa0735560:three_prime_UTR |
| TGATGAATCAGTGGATAAAT+TGG | 0.362248 | 5_1:-50953895 | Msa0735560:CDS |
| CGCCGATCTCCAGCAAGATC+TGG | 0.373236 | 5_1:+50952718 | None:intergenic |
| AGGAATGCCGGAGCATGATT+TGG | 0.373269 | 5_1:-50951677 | Msa0735560:exon |
| GCAACAAAACCAGCTTTGAT+TGG | 0.382810 | 5_1:+50951713 | None:intergenic |
| GATGAATATGTCATTTGTAT+TGG | 0.394913 | 5_1:-50951903 | Msa0735560:CDS |
| TATTGCTTGCAGTGTGGATC+AGG | 0.417838 | 5_1:-50951749 | Msa0735560:intron |
| TGTTCACTTGCAGTTTCTGA+TGG | 0.421709 | 5_1:-50953741 | Msa0735560:intron |
| GAACATAATCCAGATCTTGC+TGG | 0.451726 | 5_1:-50952727 | Msa0735560:CDS |
| TCCTTTGAAAGTAATGTGTC+CGG | 0.455774 | 5_1:+50951870 | None:intergenic |
| CGGCATTCCTTCTGCCAACA+CGG | 0.456114 | 5_1:+50951690 | None:intergenic |
| GGTACTAGTGGTTCTCTAGA+TGG | 0.461160 | 5_1:-50952219 | Msa0735560:CDS |
| TTCTCAGCTTCTGCTTTCAA+AGG | 0.463764 | 5_1:-50955717 | Msa0735560:intron |
| AAAGCTGAAAGAAAGGGTTT+CGG | 0.466192 | 5_1:-50955829 | None:intergenic |
| TCTAGATGGACAGCAAAGAT+TGG | 0.468325 | 5_1:-50952205 | Msa0735560:CDS |
| GCTTTCTTGCTTGCTGAACT+GGG | 0.473966 | 5_1:-50952240 | Msa0735560:CDS |
| TGAAACACCAAGTGGTTTGA+AGG | 0.477271 | 5_1:-50954850 | Msa0735560:CDS |
| TCCACTGATTCATCATCTGC+AGG | 0.478576 | 5_1:+50953903 | None:intergenic |
| AAGAAAGCCATAACATGGTC+TGG | 0.478796 | 5_1:+50952255 | None:intergenic |
| TTTGCAGCCTCGTTATCCTT+GGG | 0.480164 | 5_1:-50953335 | Msa0735560:CDS |
| GTTCACTTGCAGTTTCTGAT+GGG | 0.495334 | 5_1:-50953740 | Msa0735560:intron |
| CTTCTTTCTCCGGTGTGAGA+AGG | 0.497603 | 5_1:-50951838 | Msa0735560:intron |
| CCGTTATAAAGCTGAAAGAA+AGG | 0.499552 | 5_1:-50955836 | None:intergenic |
| TTGTATTGGATGCAAGAGTC+CGG | 0.500255 | 5_1:-50951889 | Msa0735560:CDS |
| CAGCCTCGTTATCCTTGGGA+AGG | 0.501422 | 5_1:-50953331 | Msa0735560:CDS |
| AGAACCGTCTCTTCTTTCTC+CGG | 0.503608 | 5_1:-50951848 | Msa0735560:CDS |
| CATGTATAGATAATGTTTCA+CGG | 0.508450 | 5_1:-50949505 | None:intergenic |
| GGCATTCCTTCTGCCAACAC+GGG | 0.516509 | 5_1:+50951691 | None:intergenic |
| TCGACCACCAGACCATGTTA+TGG | 0.517068 | 5_1:-50952262 | Msa0735560:CDS |
| CGTTATAAAGCTGAAAGAAA+GGG | 0.522946 | 5_1:-50955835 | None:intergenic |
| TCCGGACACATTACTTTCAA+AGG | 0.524514 | 5_1:-50951871 | Msa0735560:CDS |
| TTGTTGCCCGTGTTGGCAGA+AGG | 0.525657 | 5_1:-50951697 | Msa0735560:CDS |
| ATCCAGATCTTGCTGGAGAT+CGG | 0.530264 | 5_1:-50952720 | Msa0735560:CDS |
| GTGCCTTCACGAAGAACTTG+AGG | 0.533049 | 5_1:+50952676 | None:intergenic |
| TGACCGTGATTATACATATG+AGG | 0.537992 | 5_1:-50953305 | Msa0735560:CDS |
| TCAGTTGCTCCAATCAAAGC+TGG | 0.541836 | 5_1:-50951722 | Msa0735560:CDS |
| ATCGGCGAAGGACAGTTATG+AGG | 0.542408 | 5_1:-50952702 | Msa0735560:CDS |
| GAGAAGATAGAAAATCTGTC+AGG | 0.544015 | 5_1:-50953870 | Msa0735560:intron |
| ACCTCCTCCTTCAAACCACT+TGG | 0.546295 | 5_1:+50954843 | None:intergenic |
| TACCTGTATTGCAGCAAACA+TGG | 0.549614 | 5_1:-50954877 | Msa0735560:intron |
| CGTGTTGGCAGAAGGAATGC+CGG | 0.549875 | 5_1:-50951689 | Msa0735560:CDS |
| TCTTCAACTGCCTCTCCACT+AGG | 0.552585 | 5_1:+50953539 | None:intergenic |
| TTTGGTACAGCTTCTTGGCA+GGG | 0.553643 | 5_1:-50952767 | Msa0735560:intron |
| CTTGCTGAACTGGGTACTAG+TGG | 0.558172 | 5_1:-50952231 | Msa0735560:CDS |
| ACCAAGTGGTTTGAAGGAGG+AGG | 0.558508 | 5_1:-50954844 | Msa0735560:CDS |
| AGTACGGCCAAATCATGCTC+CGG | 0.563249 | 5_1:+50951670 | None:intergenic |
| ATCTTGCTGGAGATCGGCGA+AGG | 0.578493 | 5_1:-50952714 | Msa0735560:CDS |
| AGCCTCGTTATCCTTGGGAA+GGG | 0.579244 | 5_1:-50953330 | Msa0735560:CDS |
| CAGCAAAGATTGGTTGTGAA+GGG | 0.579584 | 5_1:-50952195 | Msa0735560:CDS |
| ACAGCAAAGATTGGTTGTGA+AGG | 0.582650 | 5_1:-50952196 | Msa0735560:CDS |
| TCCTGCAGATGATGAATCAG+TGG | 0.610986 | 5_1:-50953904 | Msa0735560:CDS |
| TTAAATGATATTGATGAGAG+TGG | 0.613941 | 5_1:-50953563 | Msa0735560:CDS |
| GAGGCAGTTGAAGATTTGGA+TGG | 0.616117 | 5_1:-50953530 | Msa0735560:intron |
| CCTCCTCATATGTATAATCA+CGG | 0.618081 | 5_1:+50953302 | None:intergenic |
| CTCCCTTCCCAAGGATAACG+AGG | 0.620050 | 5_1:+50953328 | None:intergenic |
| CCTCCTCAAGTTCTTCGTGA+AGG | 0.620103 | 5_1:-50952679 | Msa0735560:CDS |
| CAAGCAAGAAAGCCATAACA+TGG | 0.625960 | 5_1:+50952250 | None:intergenic |
| AATACTTACTGATATATCGC+CGG | 0.627051 | 5_1:+50952139 | None:intergenic |
| TCACGGTCACTCCCTTCCCA+AGG | 0.642597 | 5_1:+50953319 | None:intergenic |
| GAAAATTCACCTTCTCACAC+CGG | 0.642926 | 5_1:+50951829 | None:intergenic |
| CCTTCACGAAGAACTTGAGG+AGG | 0.643212 | 5_1:+50952679 | None:intergenic |
| ATTGATGAGAGTGGTCCTAG+TGG | 0.645228 | 5_1:-50953554 | Msa0735560:CDS |
| AAGCAGAAGCTGAGAAAACG+CGG | 0.646028 | 5_1:+50955724 | None:intergenic |
| AACACCAAGTGGTTTGAAGG+AGG | 0.651800 | 5_1:-50954847 | Msa0735560:CDS |
| TGAGAGTGGTCCTAGTGGAG+AGG | 0.666586 | 5_1:-50953549 | Msa0735560:CDS |
| CACACCGGAGAAAGAAGAGA+CGG | 0.669379 | 5_1:+50951844 | None:intergenic |
| CCGTGATTATACATATGAGG+AGG | 0.685858 | 5_1:-50953302 | Msa0735560:intron |
| AAAGCCATAACATGGTCTGG+TGG | 0.690026 | 5_1:+50952258 | None:intergenic |
| ATGGCAGATGAAACACCAAG+TGG | 0.740265 | 5_1:-50954858 | Msa0735560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATAAATATAAAATCAA+AGG | + | chr5_1:50949700-50949719 | None:intergenic | 10.0% |
| !!! | ATAATTGTTATATTTTTACT+TGG | - | chr5_1:50949830-50949849 | Msa0735560:intron | 10.0% |
| !!! | ATTTTTGTAAAAAAAAATAC+TGG | + | chr5_1:50953318-50953337 | None:intergenic | 10.0% |
| !!! | TTTTTACTATTTAATAGAAA+TGG | - | chr5_1:50954497-50954516 | Msa0735560:intron | 10.0% |
| !!! | TTTTTTTTCTTTTCAATATC+TGG | - | chr5_1:50949665-50949684 | Msa0735560:three_prime_UTR | 15.0% |
| !! | TTATCAATGTATGTTAATTT+AGG | - | chr5_1:50950111-50950130 | Msa0735560:intron | 15.0% |
| !!! | ATTTTTCATATTCAAATAGT+AGG | - | chr5_1:50950163-50950182 | Msa0735560:intron | 15.0% |
| !!! | TTTTTCATATTCAAATAGTA+GGG | - | chr5_1:50950164-50950183 | Msa0735560:intron | 15.0% |
| !!! | ACTTTTTTTTTAGTGTTTTA+TGG | - | chr5_1:50950212-50950231 | Msa0735560:intron | 15.0% |
| !!! | CTTTTTTTTTAGTGTTTTAT+GGG | - | chr5_1:50950213-50950232 | Msa0735560:intron | 15.0% |
| !!! | TTTTTTTTTAGTGTTTTATG+GGG | - | chr5_1:50950214-50950233 | Msa0735560:intron | 15.0% |
| !!! | TTTACATTTTAAAGGAAATT+AGG | - | chr5_1:50950951-50950970 | Msa0735560:intron | 15.0% |
| !! | ATACTAATATATGATAACAA+TGG | - | chr5_1:50951289-50951308 | Msa0735560:intron | 15.0% |
| !!! | TTTTTAAAGTTATCTGAAAA+TGG | - | chr5_1:50951538-50951557 | Msa0735560:intron | 15.0% |
| !!! | AATAGTTTAATTGATTGTTT+TGG | - | chr5_1:50952257-50952276 | Msa0735560:CDS | 15.0% |
| !!! | ATAGTTTAATTGATTGTTTT+GGG | - | chr5_1:50952258-50952277 | Msa0735560:CDS | 15.0% |
| !! | ATATAATCAAATATTCTCTA+AGG | + | chr5_1:50952371-50952390 | None:intergenic | 15.0% |
| !! | TAGAGAATATTTGATTATAT+AGG | - | chr5_1:50952371-50952390 | Msa0735560:intron | 15.0% |
| !!! | TAATTATACAGTACAATTTT+TGG | + | chr5_1:50954002-50954021 | None:intergenic | 15.0% |
| !! | AAAATTGTACTGTATAATTA+TGG | - | chr5_1:50954002-50954021 | Msa0735560:intron | 15.0% |
| !! | TTAATTGTACTGTATAATTA+TGG | - | chr5_1:50954026-50954045 | Msa0735560:intron | 15.0% |
| !! | ATTGAACTTTAATTATAAGT+AGG | - | chr5_1:50954810-50954829 | Msa0735560:intron | 15.0% |
| !! | ATATGAAATCATAAACAATT+AGG | - | chr5_1:50954886-50954905 | Msa0735560:intron | 15.0% |
| !!! | ACATTTTAATTATTTTTGCA+TGG | + | chr5_1:50955150-50955169 | None:intergenic | 15.0% |
| !!! | AGGTTTTAATTTAAACTATA+CGG | + | chr5_1:50955324-50955343 | None:intergenic | 15.0% |
| !! | AATTACACAATCAATATAAA+TGG | + | chr5_1:50955631-50955650 | None:intergenic | 15.0% |
| !!! | TATATTGATTGTGTAATTAT+TGG | - | chr5_1:50955633-50955652 | Msa0735560:intron | 15.0% |
| !! | TAAATATAAAATCAAAGGCT+TGG | + | chr5_1:50949695-50949714 | None:intergenic | 20.0% |
| !!! | TTCTTAATCTTTTTCAATTC+TGG | - | chr5_1:50949716-50949735 | Msa0735560:intron | 20.0% |
| !!! | GTTATATTTTTACTTGGAAT+TGG | - | chr5_1:50949836-50949855 | Msa0735560:intron | 20.0% |
| !! | TAGGTTGTAAAATTTGTAAT+TGG | - | chr5_1:50950130-50950149 | Msa0735560:intron | 20.0% |
| !! | AAATAGTAGGGTTTATATAA+AGG | - | chr5_1:50950176-50950195 | Msa0735560:intron | 20.0% |
| !!! | TTTTTTTTAGTGTTTTATGG+GGG | - | chr5_1:50950215-50950234 | Msa0735560:intron | 20.0% |
| !!! | TCTTATTTAGAGATTGATAA+TGG | - | chr5_1:50950301-50950320 | Msa0735560:intron | 20.0% |
| !! | TTGTTAAACAATAGCTATAT+CGG | - | chr5_1:50950562-50950581 | Msa0735560:intron | 20.0% |
| !! | TGAATTTCATTGTTGTAAAT+TGG | - | chr5_1:50950761-50950780 | Msa0735560:intron | 20.0% |
| !! | ATTTATAATGCATGATATCT+TGG | - | chr5_1:50950806-50950825 | Msa0735560:intron | 20.0% |
| !!! | TTGATAATAAGATTCAATTC+AGG | + | chr5_1:50950903-50950922 | None:intergenic | 20.0% |
| !! | TAATATATGATAACAATGGT+TGG | - | chr5_1:50951293-50951312 | Msa0735560:intron | 20.0% |
| !! | CAAATAAAAAACTTTAACTC+TGG | + | chr5_1:50951677-50951696 | None:intergenic | 20.0% |
| !!! | CAGAGTTAAAGTTTTTTATT+TGG | - | chr5_1:50951675-50951694 | Msa0735560:exon | 20.0% |
| !!! | GAATATAATTTGTGTTTGTT+TGG | - | chr5_1:50951850-50951869 | Msa0735560:CDS | 20.0% |
| !! | ATGTACATCAGTATAAAAAA+TGG | + | chr5_1:50952060-50952079 | None:intergenic | 20.0% |
| !!! | GTGATTCAAATTAGTTTTTT+TGG | - | chr5_1:50952172-50952191 | Msa0735560:CDS | 20.0% |
| !! | GATTCAAATTAGTTATTATC+TGG | - | chr5_1:50952203-50952222 | Msa0735560:CDS | 20.0% |
| !! | AACAATCAATTAAACTATTC+TGG | + | chr5_1:50952256-50952275 | None:intergenic | 20.0% |
| !!! | TTTAGGTAATATTTTGAACA+CGG | + | chr5_1:50952452-50952471 | None:intergenic | 20.0% |
| !!! | TCGTATGTTTTTTTTTAATC+TGG | - | chr5_1:50952719-50952738 | Msa0735560:CDS | 20.0% |
| !!! | TGATTTGTAGAAGAAAAATA+CGG | + | chr5_1:50952970-50952989 | None:intergenic | 20.0% |
| !! | TTCAACACAAATAAAAAGTA+CGG | + | chr5_1:50953681-50953700 | None:intergenic | 20.0% |
| !! | TATTTGTGTTGAAATTGATT+AGG | - | chr5_1:50953688-50953707 | Msa0735560:intron | 20.0% |
| !!! | AGCATTGTTATTCTTTTTAA+GGG | - | chr5_1:50953797-50953816 | Msa0735560:intron | 20.0% |
| !!! | AATTTTGGAATATGAGTAAA+TGG | - | chr5_1:50953859-50953878 | Msa0735560:intron | 20.0% |
| !! | AGATTAAAATGATTATGGTT+TGG | - | chr5_1:50953965-50953984 | Msa0735560:intron | 20.0% |
| !!! | TACTGTATAATTATGGATTA+TGG | - | chr5_1:50954009-50954028 | Msa0735560:intron | 20.0% |
| !! | TATTTAATAGAAATGGTACT+TGG | - | chr5_1:50954504-50954523 | Msa0735560:intron | 20.0% |
| !! | TTCTAAACAATTCATTTCTT+TGG | + | chr5_1:50954664-50954683 | None:intergenic | 20.0% |
| !!! | CAAGCTTTTTTTTTTTTTGA+AGG | + | chr5_1:50954760-50954779 | None:intergenic | 20.0% |
| !!! | TTTTATTTATGCAATCAACA+AGG | - | chr5_1:50955104-50955123 | Msa0735560:intron | 20.0% |
| ! | CAATTATCAGCTAAATTAGT+GGG | + | chr5_1:50949817-50949836 | None:intergenic | 25.0% |
| ! | ACAATTATCAGCTAAATTAG+TGG | + | chr5_1:50949818-50949837 | None:intergenic | 25.0% |
| !! | TTGGAATTGGTTTAATTTCT+GGG | - | chr5_1:50949849-50949868 | Msa0735560:intron | 25.0% |
| !!! | AAATTTTAACCGTATTTGAG+AGG | - | chr5_1:50950275-50950294 | Msa0735560:intron | 25.0% |
| ! | ATAAGATAACCTCTCAAATA+CGG | + | chr5_1:50950287-50950306 | None:intergenic | 25.0% |
| !!! | TCCTATATCTTTACTTTTCA+TGG | - | chr5_1:50950392-50950411 | Msa0735560:intron | 25.0% |
| !! | CTATAGTTATCTATCGTTTT+CGG | - | chr5_1:50950534-50950553 | Msa0735560:intron | 25.0% |
| ! | TTGTATTAAATAGTGTATCG+CGG | + | chr5_1:50950596-50950615 | None:intergenic | 25.0% |
| ! | AAAAACTGATTACAGAACAT+CGG | + | chr5_1:50950740-50950759 | None:intergenic | 25.0% |
| !! | ATTGTTGTAAATTGGTGATT+TGG | - | chr5_1:50950769-50950788 | Msa0735560:intron | 25.0% |
| !! | TTCATAGTTTGAAATAACCA+TGG | + | chr5_1:50950858-50950877 | None:intergenic | 25.0% |
| !! | GGTTATTTCAAACTATGAAT+AGG | - | chr5_1:50950859-50950878 | Msa0735560:intron | 25.0% |
| !! | TTGAATCTTGAATCATTTTG+AGG | + | chr5_1:50951024-50951043 | None:intergenic | 25.0% |
| !!! | AATGACAAAATAAAAGTGTC+TGG | - | chr5_1:50951055-50951074 | Msa0735560:intron | 25.0% |
| !! | TTTTTCTTAGTAGGATCAAA+TGG | + | chr5_1:50951381-50951400 | None:intergenic | 25.0% |
| !! | TTCTTCTTCTTTTTCTTAGT+AGG | + | chr5_1:50951390-50951409 | None:intergenic | 25.0% |
| ! | TTAAAGTTATCTGAAAATGG+TGG | - | chr5_1:50951541-50951560 | Msa0735560:intron | 25.0% |
| !!! | GAAGTTTGTTATTTGATTGT+AGG | - | chr5_1:50951732-50951751 | Msa0735560:CDS | 25.0% |
| ! | TTAAATGATATTGATGAGAG+TGG | - | chr5_1:50951769-50951788 | Msa0735560:intron | 25.0% |
| ! | AACTAATTTGAATCACAGAT+TGG | + | chr5_1:50952168-50952187 | None:intergenic | 25.0% |
| !! | ATTCTTCATTTTATCCTTGT+TGG | - | chr5_1:50952394-50952413 | Msa0735560:intron | 25.0% |
| ! | TTCCAAGTAAAAACTGAAAA+GGG | + | chr5_1:50952489-50952508 | None:intergenic | 25.0% |
| ! | TTTCCAAGTAAAAACTGAAA+AGG | + | chr5_1:50952490-50952509 | None:intergenic | 25.0% |
| ! | AGAAGAAGAAAAAAAAAGCA+GGG | + | chr5_1:50952527-50952546 | None:intergenic | 25.0% |
| ! | AAGAAGAAGAAAAAAAAAGC+AGG | + | chr5_1:50952528-50952547 | None:intergenic | 25.0% |
| !!! | CTTTTTTTTTCTTCTTCTTG+TGG | - | chr5_1:50952529-50952548 | Msa0735560:intron | 25.0% |
| !! | TGTGGATTCTAAACAATTTT+TGG | - | chr5_1:50952547-50952566 | Msa0735560:intron | 25.0% |
| !! | AACTGTGTTTGTGAATTTTA+TGG | - | chr5_1:50952685-50952704 | Msa0735560:CDS | 25.0% |
| ! | ATTTGTAGAAGAAAAATACG+GGG | + | chr5_1:50952968-50952987 | None:intergenic | 25.0% |
| ! | GATTTGTAGAAGAAAAATAC+GGG | + | chr5_1:50952969-50952988 | None:intergenic | 25.0% |
| ! | AGAATTCCTTCAAAATTCTT+TGG | + | chr5_1:50953173-50953192 | None:intergenic | 25.0% |
| ! | ACAATTTAAATCGATATCCA+TGG | + | chr5_1:50953391-50953410 | None:intergenic | 25.0% |
| !! | GATGAATATGTCATTTGTAT+TGG | - | chr5_1:50953429-50953448 | Msa0735560:intron | 25.0% |
| ! | AATACTGAATGGTAAAACAA+TGG | + | chr5_1:50953549-50953568 | None:intergenic | 25.0% |
| !!! | GAGCATTGTTATTCTTTTTA+AGG | - | chr5_1:50953796-50953815 | Msa0735560:intron | 25.0% |
| !!! | GCATTGTTATTCTTTTTAAG+GGG | - | chr5_1:50953798-50953817 | Msa0735560:intron | 25.0% |
| !! | AATGAATTGAACTGCAATTT+TGG | - | chr5_1:50953844-50953863 | Msa0735560:intron | 25.0% |
| ! | AAAAGAAACCACGTAAAATT+TGG | + | chr5_1:50953926-50953945 | None:intergenic | 25.0% |
| !!! | TCTTTTGTTTTTGCATTGTA+CGG | - | chr5_1:50953940-50953959 | Msa0735560:CDS | 25.0% |
| !!! | TTTTGACGTTAGTAATTTGT+AGG | - | chr5_1:50954144-50954163 | Msa0735560:intron | 25.0% |
| !! | CTTTTAAATGATACATGTAG+TGG | - | chr5_1:50954330-50954349 | Msa0735560:intron | 25.0% |
| !!! | AAAGCTTGAAATTTTAGTGT+TGG | - | chr5_1:50954409-50954428 | Msa0735560:intron | 25.0% |
| ! | TTACAATTAAAGTTCAAGCT+AGG | + | chr5_1:50954448-50954467 | None:intergenic | 25.0% |
| ! | TTACAATTAAAGTTCAAGCT+AGG | + | chr5_1:50954448-50954467 | None:intergenic | 25.0% |
| ! | AGCAAAATTTAAAAGCTTCA+AGG | - | chr5_1:50954714-50954733 | Msa0735560:intron | 25.0% |
| ! | GCAAAATTTAAAAGCTTCAA+GGG | - | chr5_1:50954715-50954734 | Msa0735560:intron | 25.0% |
| ! | TTTATTTGCGTCAATACATA+TGG | - | chr5_1:50955059-50955078 | Msa0735560:intron | 25.0% |
| ! | AGGACATCTAATTAAATACA+TGG | - | chr5_1:50955124-50955143 | Msa0735560:intron | 25.0% |
| !!! | TTTGGTACTTTTGATTATGT+AGG | + | chr5_1:50955344-50955363 | None:intergenic | 25.0% |
| !! | GAGTGAGTTATTTAAACTTT+TGG | + | chr5_1:50955362-50955381 | None:intergenic | 25.0% |
| !! | TGTATATATGCAACTTTTTG+TGG | - | chr5_1:50955408-50955427 | Msa0735560:intron | 25.0% |
| !! | GTATATATGCAACTTTTTGT+GGG | - | chr5_1:50955409-50955428 | Msa0735560:intron | 25.0% |
| ! | CATAGTAATATTCTTGACAA+AGG | - | chr5_1:50955474-50955493 | Msa0735560:intron | 25.0% |
| ! | TTGTGTAATTATTGGATTTG+AGG | - | chr5_1:50955641-50955660 | Msa0735560:intron | 25.0% |
| !! | AAGCAAGCATTGTTATTATA+TGG | - | chr5_1:50955695-50955714 | Msa0735560:intron | 25.0% |
| !!! | TGTGTGTGTGTGTTTTTTTT+TGG | + | chr5_1:50949531-50949550 | None:intergenic | 30.0% |
| ! | CTTGGAATTGGTTTAATTTC+TGG | - | chr5_1:50949848-50949867 | Msa0735560:intron | 30.0% |
| ! | TGGAATTGGTTTAATTTCTG+GGG | - | chr5_1:50949850-50949869 | Msa0735560:intron | 30.0% |
| ATAAGTAGTAGATTGAATCG+CGG | + | chr5_1:50949943-50949962 | None:intergenic | 30.0% | |
| TAAAGAATGAAGACTCGATT+CGG | + | chr5_1:50950087-50950106 | None:intergenic | 30.0% | |
| AGTAGGGTTTATATAAAGGA+TGG | - | chr5_1:50950180-50950199 | Msa0735560:intron | 30.0% | |
| GCCATGAAAAGTAAAGATAT+AGG | + | chr5_1:50950396-50950415 | None:intergenic | 30.0% | |
| ! | CTCTTCCTATGTACTAATTT+TGG | - | chr5_1:50950431-50950450 | Msa0735560:intron | 30.0% |
| GGTAACCAAAATTAGTACAT+AGG | + | chr5_1:50950439-50950458 | None:intergenic | 30.0% | |
| !! | TGAAAGCATTCTTAAAACCA+AGG | + | chr5_1:50950693-50950712 | None:intergenic | 30.0% |
| AAAACTGATTACAGAACATC+GGG | + | chr5_1:50950739-50950758 | None:intergenic | 30.0% | |
| CAATTCAGGATTCAGAAAAT+AGG | + | chr5_1:50950889-50950908 | None:intergenic | 30.0% | |
| ACTGAAAAAGAAGAAGTTGT+TGG | - | chr5_1:50951086-50951105 | Msa0735560:intron | 30.0% | |
| AAGTGACTATCAGAATGAAT+CGG | - | chr5_1:50951125-50951144 | Msa0735560:intron | 30.0% | |
| ATCCAATCAATACAAATCTC+TGG | + | chr5_1:50951228-50951247 | None:intergenic | 30.0% | |
| TGATGAATCAGTGGATAAAT+TGG | - | chr5_1:50951437-50951456 | Msa0735560:intron | 30.0% | |
| ! | TGACAGATTTTCTATCTTCT+CGG | + | chr5_1:50951463-50951482 | None:intergenic | 30.0% |
| TTTGGCTAGACTAGATTTAT+TGG | - | chr5_1:50951693-50951712 | Msa0735560:CDS | 30.0% | |
| AATTTGTGTTTGTTTGGTAG+TGG | - | chr5_1:50951856-50951875 | Msa0735560:CDS | 30.0% | |
| GCTAATGAATGCTAAACTTA+CGG | - | chr5_1:50951920-50951939 | Msa0735560:intron | 30.0% | |
| TAATTTGAATCACAGATTGG+AGG | + | chr5_1:50952165-50952184 | None:intergenic | 30.0% | |
| !! | TAGTTATTATCTGGTTCTTG+TGG | - | chr5_1:50952212-50952231 | Msa0735560:CDS | 30.0% |
| ! | TACCCTTTTCAGTTTTTACT+TGG | - | chr5_1:50952484-50952503 | Msa0735560:intron | 30.0% |
| AAAAAACATACGATTTGCAC+AGG | + | chr5_1:50952712-50952731 | None:intergenic | 30.0% | |
| AAAAACCTAGCGATTCTATT+TGG | - | chr5_1:50952887-50952906 | Msa0735560:intron | 30.0% | |
| GGTGAATAAAGAATAACCAA+GGG | + | chr5_1:50952927-50952946 | None:intergenic | 30.0% | |
| AGGTGAATAAAGAATAACCA+AGG | + | chr5_1:50952928-50952947 | None:intergenic | 30.0% | |
| ! | TTTGCACCAAAGAATTTTGA+AGG | - | chr5_1:50953164-50953183 | Msa0735560:intron | 30.0% |
| !! | AGAATTTTGAAGGAATTCTC+CGG | - | chr5_1:50953174-50953193 | Msa0735560:intron | 30.0% |
| AATACTTACTGATATATCGC+CGG | + | chr5_1:50953196-50953215 | None:intergenic | 30.0% | |
| TTTGCAAGACTCTTAATCTA+AGG | - | chr5_1:50953359-50953378 | Msa0735560:CDS | 30.0% | |
| ! | TTAATCTAAGGTTATTGCCA+TGG | - | chr5_1:50953371-50953390 | Msa0735560:CDS | 30.0% |
| AATGGTAAAACAATGGAAAC+GGG | + | chr5_1:50953542-50953561 | None:intergenic | 30.0% | |
| GAATGGTAAAACAATGGAAA+CGG | + | chr5_1:50953543-50953562 | None:intergenic | 30.0% | |
| TGGACTACAATTTGTGAAAA+AGG | + | chr5_1:50953722-50953741 | None:intergenic | 30.0% | |
| ! | ATATGAGTAAATGGTTTGTC+AGG | - | chr5_1:50953868-50953887 | Msa0735560:intron | 30.0% |
| ! | ATACTCTTCCAAATTTTACG+TGG | - | chr5_1:50953915-50953934 | Msa0735560:CDS | 30.0% |
| !!! | CTTTTGTTTTTGCATTGTAC+GGG | - | chr5_1:50953941-50953960 | Msa0735560:CDS | 30.0% |
| CGGGAAGATTAAAATGATTA+TGG | - | chr5_1:50953960-50953979 | Msa0735560:CDS | 30.0% | |
| !!! | TTTTTTTGGTCTACTTTGTG+AGG | + | chr5_1:50954095-50954114 | None:intergenic | 30.0% |
| ! | AAAAATTTTGCCTCACAATG+TGG | - | chr5_1:50954119-50954138 | Msa0735560:intron | 30.0% |
| CAGATTACGAAAAATGTATC+TGG | + | chr5_1:50954304-50954323 | None:intergenic | 30.0% | |
| !!! | GAAATTTTAGTGTTGGTACT+TGG | - | chr5_1:50954416-50954435 | Msa0735560:intron | 30.0% |
| TATTAACCATTTGCACTCAT+CGG | + | chr5_1:50954630-50954649 | None:intergenic | 30.0% | |
| !! | CAATTCATTTCTTTGGAGTT+TGG | + | chr5_1:50954657-50954676 | None:intergenic | 30.0% |
| ATTAAAGTTCAATCTCACCT+AGG | + | chr5_1:50954803-50954822 | None:intergenic | 30.0% | |
| TAGGAAAATGAAGCAACTTA+AGG | - | chr5_1:50954829-50954848 | Msa0735560:intron | 30.0% | |
| AGGAAAATGAAGCAACTTAA+GGG | - | chr5_1:50954830-50954849 | Msa0735560:intron | 30.0% | |
| CATAAACAATTAGGCTTAAG+AGG | - | chr5_1:50954895-50954914 | Msa0735560:intron | 30.0% | |
| GAGGTTAATAAACTCTATGA+CGG | - | chr5_1:50954914-50954933 | Msa0735560:intron | 30.0% | |
| AATGCTTGCAATGAACTTAA+AGG | + | chr5_1:50955454-50955473 | None:intergenic | 30.0% | |
| AATATTCTTGACAAAGGAGA+TGG | - | chr5_1:50955480-50955499 | Msa0735560:intron | 30.0% | |
| ATATTCTTGACAAAGGAGAT+GGG | - | chr5_1:50955481-50955500 | Msa0735560:intron | 30.0% | |
| GCATAATCAAAAGCAAACAC+GGG | + | chr5_1:50949764-50949783 | None:intergenic | 35.0% | |
| CGCATAATCAAAAGCAAACA+CGG | + | chr5_1:50949765-50949784 | None:intergenic | 35.0% | |
| AATTAGAGCGAAACCCAATT+CGG | - | chr5_1:50949899-50949918 | Msa0735560:intron | 35.0% | |
| ! | AACATTTTCATAGCGCATTG+GGG | + | chr5_1:50949972-50949991 | None:intergenic | 35.0% |
| ! | CAACATTTTCATAGCGCATT+GGG | + | chr5_1:50949973-50949992 | None:intergenic | 35.0% |
| CAATGCGCTATGAAAATGTT+GGG | - | chr5_1:50949972-50949991 | Msa0735560:intron | 35.0% | |
| ATGGGGTATGTTAATTGTGA+GGG | - | chr5_1:50949995-50950014 | Msa0735560:intron | 35.0% | |
| !!! | TTTATTTTGTCCCTGATGAG+AGG | - | chr5_1:50950019-50950038 | Msa0735560:intron | 35.0% |
| !! | TTATTTTGTCCCTGATGAGA+GGG | - | chr5_1:50950020-50950039 | Msa0735560:intron | 35.0% |
| !! | TATTTTTACCCGGACTGAAT+TGG | - | chr5_1:50950046-50950065 | Msa0735560:intron | 35.0% |
| ! | ATTTTTACCCGGACTGAATT+GGG | - | chr5_1:50950047-50950066 | Msa0735560:intron | 35.0% |
| ! | TTTAGTGTTTTATGGGGGTT+TGG | - | chr5_1:50950220-50950239 | Msa0735560:intron | 35.0% |
| GATGATGCAGTAGAATAGTA+TGG | + | chr5_1:50950374-50950393 | None:intergenic | 35.0% | |
| AGCGAAAATAAACTTACGTC+TGG | + | chr5_1:50950516-50950535 | None:intergenic | 35.0% | |
| AATGCATGATATCTTGGTCA+TGG | - | chr5_1:50950812-50950831 | Msa0735560:intron | 35.0% | |
| GAGGTTAGTAGATGATACAA+GGG | + | chr5_1:50951005-50951024 | None:intergenic | 35.0% | |
| TGAGGTTAGTAGATGATACA+AGG | + | chr5_1:50951006-50951025 | None:intergenic | 35.0% | |
| !! | TTGTTGGCTACACTATGTTT+TGG | - | chr5_1:50951102-50951121 | Msa0735560:intron | 35.0% |
| AGTGACTATCAGAATGAATC+GGG | - | chr5_1:50951126-50951145 | Msa0735560:intron | 35.0% | |
| ! | CACCAGAGATTTGTATTGAT+TGG | - | chr5_1:50951223-50951242 | Msa0735560:intron | 35.0% |
| GAGAAGATAGAAAATCTGTC+AGG | - | chr5_1:50951462-50951481 | Msa0735560:intron | 35.0% | |
| TTAAAAACATGAACCATGCC+AGG | + | chr5_1:50951525-50951544 | None:intergenic | 35.0% | |
| GTTATCTGAAAATGGTGGTT+AGG | - | chr5_1:50951546-50951565 | Msa0735560:intron | 35.0% | |
| GACTACAAGTAATGCCTTTA+AGG | - | chr5_1:50951894-50951913 | Msa0735560:CDS | 35.0% | |
| ! | ACAAGTAATGCCTTTAAGGA+AGG | - | chr5_1:50951898-50951917 | Msa0735560:CDS | 35.0% |
| !! | CATTCATTAGCCTTCCTTAA+AGG | + | chr5_1:50951911-50951930 | None:intergenic | 35.0% |
| TGACCGTGATTATACATATG+AGG | - | chr5_1:50952027-50952046 | Msa0735560:intron | 35.0% | |
| CCTCCTCATATGTATAATCA+CGG | + | chr5_1:50952033-50952052 | None:intergenic | 35.0% | |
| AAATCAGCTCAGAAACACTA+TGG | + | chr5_1:50952140-50952159 | None:intergenic | 35.0% | |
| GGGTAGATTGAAAATGCTTT+AGG | + | chr5_1:50952469-50952488 | None:intergenic | 35.0% | |
| AAAAAAAAAGCAGGGAGGAT+TGG | + | chr5_1:50952519-50952538 | None:intergenic | 35.0% | |
| AGAAGAAAAAAAAAGCAGGG+AGG | + | chr5_1:50952524-50952543 | None:intergenic | 35.0% | |
| !!! | CAATTTTTGGTACAGCTTCT+TGG | - | chr5_1:50952560-50952579 | Msa0735560:intron | 35.0% |
| ACATCTTGAACTTTCACTAG+AGG | - | chr5_1:50952756-50952775 | Msa0735560:CDS | 35.0% | |
| !! | TAACAAGAGGGAAAGTATTG+AGG | + | chr5_1:50953009-50953028 | None:intergenic | 35.0% |
| AATCAGCTGCATTTCAGAAA+TGG | - | chr5_1:50953233-50953252 | Msa0735560:intron | 35.0% | |
| ! | TCCTTTGAAAGTAATGTGTC+CGG | + | chr5_1:50953465-50953484 | None:intergenic | 35.0% |
| !!! | CAGCGTTTTAGAATACTGAA+TGG | + | chr5_1:50953560-50953579 | None:intergenic | 35.0% |
| !! | CATTCAGTATTCTAAAACGC+TGG | - | chr5_1:50953558-50953577 | Msa0735560:CDS | 35.0% |
| AAGCGAGGGTTACATAAATA+TGG | + | chr5_1:50953742-50953761 | None:intergenic | 35.0% | |
| ! | ACGTTAGTAATTTGTAGGCA+TGG | - | chr5_1:50954149-50954168 | Msa0735560:intron | 35.0% |
| AGCTTGATATACGTACTGTT+AGG | - | chr5_1:50954358-50954377 | Msa0735560:intron | 35.0% | |
| CAATTAAAGTTCAAGCTAGG+TGG | + | chr5_1:50954445-50954464 | None:intergenic | 35.0% | |
| TCGAAAATGAAGCAACTTCA+AGG | - | chr5_1:50954470-50954489 | Msa0735560:intron | 35.0% | |
| CGAAAATGAAGCAACTTCAA+GGG | - | chr5_1:50954471-50954490 | Msa0735560:intron | 35.0% | |
| CAATTAAAGTTCAAGCTAGG+TGG | + | chr5_1:50954445-50954464 | None:intergenic | 35.0% | |
| TCGAAAATGAAGCAACTTCA+AGG | - | chr5_1:50954470-50954489 | Msa0735560:intron | 35.0% | |
| CGAAAATGAAGCAACTTCAA+GGG | - | chr5_1:50954471-50954490 | Msa0735560:intron | 35.0% | |
| ! | TTTTAACCGATGAGTGCAAA+TGG | - | chr5_1:50954621-50954640 | Msa0735560:intron | 35.0% |
| !! | TTTCGAGTTCGATTAGATGA+AGG | - | chr5_1:50954687-50954706 | Msa0735560:intron | 35.0% |
| AAAAGCTTGAACTCTGATAG+TGG | - | chr5_1:50954771-50954790 | Msa0735560:intron | 35.0% | |
| GGAAAATGAAGCAACTTAAG+GGG | - | chr5_1:50954831-50954850 | Msa0735560:intron | 35.0% | |
| GGAATTAGAGTTCAAATCTC+CGG | - | chr5_1:50954947-50954966 | Msa0735560:intron | 35.0% | |
| !! | CAAATGGATTATGGAGACAA+AGG | + | chr5_1:50955187-50955206 | None:intergenic | 35.0% |
| AATGAAGGCCATAGTCATTA+GGG | - | chr5_1:50955244-50955263 | Msa0735560:intron | 35.0% | |
| TCTTTCAACCCTAATGACTA+TGG | + | chr5_1:50955255-50955274 | None:intergenic | 35.0% | |
| ! | TTGCTATGATCACACACTTT+TGG | + | chr5_1:50955560-50955579 | None:intergenic | 35.0% |
| TGATATCCATGACTTCTGTA+CGG | + | chr5_1:50955587-50955606 | None:intergenic | 35.0% | |
| TTCTCAGCTTCTGCTTTCAA+AGG | - | chr5_1:50949615-50949634 | Msa0735560:three_prime_UTR | 40.0% | |
| ! | CCAACATTTTCATAGCGCAT+TGG | + | chr5_1:50949974-50949993 | None:intergenic | 40.0% |
| CCAATGCGCTATGAAAATGT+TGG | - | chr5_1:50949971-50949990 | Msa0735560:intron | 40.0% | |
| CGCTATGAAAATGTTGGGAT+GGG | - | chr5_1:50949977-50949996 | Msa0735560:intron | 40.0% | |
| GCTATGAAAATGTTGGGATG+GGG | - | chr5_1:50949978-50949997 | Msa0735560:intron | 40.0% | |
| GATGGGGTATGTTAATTGTG+AGG | - | chr5_1:50949994-50950013 | Msa0735560:intron | 40.0% | |
| ! | TATTTTGTCCCTGATGAGAG+GGG | - | chr5_1:50950021-50950040 | Msa0735560:intron | 40.0% |
| AAAATAAGCCCCTCTCATCA+GGG | + | chr5_1:50950032-50950051 | None:intergenic | 40.0% | |
| AAAAATAAGCCCCTCTCATC+AGG | + | chr5_1:50950033-50950052 | None:intergenic | 40.0% | |
| ! | TTTTATCGCCCAATTCAGTC+CGG | + | chr5_1:50950058-50950077 | None:intergenic | 40.0% |
| TACCTGTATTGCAGCAAACA+TGG | - | chr5_1:50950455-50950474 | Msa0735560:intron | 40.0% | |
| TGAAACACCAAGTGGTTTGA+AGG | - | chr5_1:50950482-50950501 | Msa0735560:intron | 40.0% | |
| ! | TCCTTGATTAGTTCGTACCA+TGG | - | chr5_1:50950838-50950857 | Msa0735560:intron | 40.0% |
| ACCATGGTACGAACTAATCA+AGG | + | chr5_1:50950842-50950861 | None:intergenic | 40.0% | |
| GGGATTCATGACAATGAATC+AGG | - | chr5_1:50951166-50951185 | Msa0735560:intron | 40.0% | |
| AACAAGCATTAGCAATCTCC+TGG | - | chr5_1:50951504-50951523 | Msa0735560:intron | 40.0% | |
| TGTTCACTTGCAGTTTCTGA+TGG | - | chr5_1:50951591-50951610 | Msa0735560:intron | 40.0% | |
| GTTCACTTGCAGTTTCTGAT+GGG | - | chr5_1:50951592-50951611 | Msa0735560:intron | 40.0% | |
| !! | CTCTGGAAAAAGTGTCTTAC+AGG | + | chr5_1:50951660-50951679 | None:intergenic | 40.0% |
| CCGTGATTATACATATGAGG+AGG | - | chr5_1:50952030-50952049 | Msa0735560:intron | 40.0% | |
| TAAAACATCAACCCGTCAGA+AGG | + | chr5_1:50952284-50952303 | None:intergenic | 40.0% | |
| !! | AGAATTGGCTTGATCCAACA+AGG | + | chr5_1:50952411-50952430 | None:intergenic | 40.0% |
| GAACATAATCCAGATCTTGC+TGG | - | chr5_1:50952605-50952624 | Msa0735560:intron | 40.0% | |
| CTTGCAGACGTTCATACATT+TGG | + | chr5_1:50952834-50952853 | None:intergenic | 40.0% | |
| TCACTCCAAATAGAATCGCT+AGG | + | chr5_1:50952895-50952914 | None:intergenic | 40.0% | |
| GGGTATTATACAAGCTCAAC+AGG | + | chr5_1:50952948-50952967 | None:intergenic | 40.0% | |
| GCAACAGCACATTAACAAGA+GGG | + | chr5_1:50953021-50953040 | None:intergenic | 40.0% | |
| AGCAACAGCACATTAACAAG+AGG | + | chr5_1:50953022-50953041 | None:intergenic | 40.0% | |
| GTACTGTTACCTGATCTTTC+AGG | - | chr5_1:50953042-50953061 | Msa0735560:intron | 40.0% | |
| AAGAAAGCCATAACATGGTC+TGG | + | chr5_1:50953080-50953099 | None:intergenic | 40.0% | |
| CAAGCAAGAAAGCCATAACA+TGG | + | chr5_1:50953085-50953104 | None:intergenic | 40.0% | |
| TCTAGATGGACAGCAAAGAT+TGG | - | chr5_1:50953127-50953146 | Msa0735560:intron | 40.0% | |
| ! | ACAGCAAAGATTGGTTGTGA+AGG | - | chr5_1:50953136-50953155 | Msa0735560:intron | 40.0% |
| ! | CAGCAAAGATTGGTTGTGAA+GGG | - | chr5_1:50953137-50953156 | Msa0735560:intron | 40.0% |
| TTGTATTGGATGCAAGAGTC+CGG | - | chr5_1:50953443-50953462 | Msa0735560:intron | 40.0% | |
| TCCGGACACATTACTTTCAA+AGG | - | chr5_1:50953461-50953480 | Msa0735560:intron | 40.0% | |
| ! | GCAACAAAACCAGCTTTGAT+TGG | + | chr5_1:50953622-50953641 | None:intergenic | 40.0% |
| TAACGAAGTCTTAGAAGCGA+GGG | + | chr5_1:50953756-50953775 | None:intergenic | 40.0% | |
| ATAACGAAGTCTTAGAAGCG+AGG | + | chr5_1:50953757-50953776 | None:intergenic | 40.0% | |
| !! | TCGCTTCTAAGACTTCGTTA+TGG | - | chr5_1:50953756-50953775 | Msa0735560:intron | 40.0% |
| !! | CGCTTCTAAGACTTCGTTAT+GGG | - | chr5_1:50953757-50953776 | Msa0735560:intron | 40.0% |
| !! | GCTTCTAAGACTTCGTTATG+GGG | - | chr5_1:50953758-50953777 | Msa0735560:intron | 40.0% |
| GTTATGGGGTTGCCTTTAAT+GGG | - | chr5_1:50953772-50953791 | Msa0735560:intron | 40.0% | |
| TAACAATGCTCGCCCATTAA+AGG | + | chr5_1:50953787-50953806 | None:intergenic | 40.0% | |
| AAAGTTCAATCTCACCTAGG+TGG | + | chr5_1:50954800-50954819 | None:intergenic | 40.0% | |
| GAGTTCAAATCTCCGGAAAT+AGG | - | chr5_1:50954954-50954973 | Msa0735560:intron | 40.0% | |
| TTCAAATCTCCGGAAATAGG+AGG | - | chr5_1:50954957-50954976 | Msa0735560:intron | 40.0% | |
| TCAAATCTCCGGAAATAGGA+GGG | - | chr5_1:50954958-50954977 | Msa0735560:intron | 40.0% | |
| GGTATTAACCCTCCTATTTC+CGG | + | chr5_1:50954969-50954988 | None:intergenic | 40.0% | |
| ATAAATAAGCAGCAGTGCAG+TGG | + | chr5_1:50955044-50955063 | None:intergenic | 40.0% | |
| TATGGAGACAAAGGATGAGA+TGG | + | chr5_1:50955178-50955197 | None:intergenic | 40.0% | |
| CTCCATAATCCATTTGCAGA+AGG | - | chr5_1:50955191-50955210 | Msa0735560:intron | 40.0% | |
| !! | AGCCTTCTGCAAATGGATTA+TGG | + | chr5_1:50955196-50955215 | None:intergenic | 40.0% |
| TCTTCTAAGCCTTCTGCAAA+TGG | + | chr5_1:50955203-50955222 | None:intergenic | 40.0% | |
| CAATGAAGGCCATAGTCATT+AGG | - | chr5_1:50955243-50955262 | Msa0735560:intron | 40.0% | |
| GTCATTAGGGTTGAAAGAAG+TGG | - | chr5_1:50955257-50955276 | Msa0735560:intron | 40.0% | |
| CATTCTCCCATACAAACTTG+TGG | - | chr5_1:50955286-50955305 | Msa0735560:intron | 40.0% | |
| ACAGTGCCACAAGTTTGTAT+GGG | + | chr5_1:50955295-50955314 | None:intergenic | 40.0% | |
| AACAGTGCCACAAGTTTGTA+TGG | + | chr5_1:50955296-50955315 | None:intergenic | 40.0% | |
| TACAAACTTGTGGCACTGTT+AGG | - | chr5_1:50955296-50955315 | Msa0735560:intron | 40.0% | |
| TCAAGAGAGACTTCCATTTC+AGG | + | chr5_1:50955516-50955535 | None:intergenic | 40.0% | |
| GATATCCATGACTTCTGTAC+GGG | + | chr5_1:50955586-50955605 | None:intergenic | 40.0% | |
| AAGCAGAAGCTGAGAAAACG+CGG | + | chr5_1:50949611-50949630 | None:intergenic | 45.0% | |
| AAACTGCGAGGAACCGAATT+GGG | + | chr5_1:50949915-50949934 | None:intergenic | 45.0% | |
| AAAACTGCGAGGAACCGAAT+TGG | + | chr5_1:50949916-50949935 | None:intergenic | 45.0% | |
| GCGCTATGAAAATGTTGGGA+TGG | - | chr5_1:50949976-50949995 | Msa0735560:intron | 45.0% | |
| !!! | GAGAGGGGCTTATTTTTACC+CGG | - | chr5_1:50950036-50950055 | Msa0735560:intron | 45.0% |
| TTTATCGCCCAATTCAGTCC+GGG | + | chr5_1:50950057-50950076 | None:intergenic | 45.0% | |
| ! | AGTGTTTTATGGGGGTTTGG+AGG | - | chr5_1:50950223-50950242 | Msa0735560:intron | 45.0% |
| ! | GTGTTTTATGGGGGTTTGGA+GGG | - | chr5_1:50950224-50950243 | Msa0735560:intron | 45.0% |
| ! | TGTTTTATGGGGGTTTGGAG+GGG | - | chr5_1:50950225-50950244 | Msa0735560:intron | 45.0% |
| ! | TGCCATGTTTGCTGCAATAC+AGG | + | chr5_1:50950460-50950479 | None:intergenic | 45.0% |
| ATGGCAGATGAAACACCAAG+TGG | - | chr5_1:50950474-50950493 | Msa0735560:intron | 45.0% | |
| AACACCAAGTGGTTTGAAGG+AGG | - | chr5_1:50950485-50950504 | Msa0735560:intron | 45.0% | |
| AGAACATCGGGCACAATCAA+AGG | + | chr5_1:50950727-50950746 | None:intergenic | 45.0% | |
| TCCTGCAGATGATGAATCAG+TGG | - | chr5_1:50951428-50951447 | Msa0735560:intron | 45.0% | |
| !! | TCCACTGATTCATCATCTGC+AGG | + | chr5_1:50951432-50951451 | None:intergenic | 45.0% |
| ATTGATGAGAGTGGTCCTAG+TGG | - | chr5_1:50951778-50951797 | Msa0735560:intron | 45.0% | |
| TGGAGAGGCAGTTGAAGATT+TGG | - | chr5_1:50951798-50951817 | Msa0735560:intron | 45.0% | |
| GAGGCAGTTGAAGATTTGGA+TGG | - | chr5_1:50951802-50951821 | Msa0735560:intron | 45.0% | |
| TTTGCAGCCTCGTTATCCTT+GGG | - | chr5_1:50951997-50952016 | Msa0735560:intron | 45.0% | |
| !!! | GATTGTTTTGGGCCTTCTGA+CGG | - | chr5_1:50952269-50952288 | Msa0735560:CDS | 45.0% |
| !!! | ATTGTTTTGGGCCTTCTGAC+GGG | - | chr5_1:50952270-50952289 | Msa0735560:CDS | 45.0% |
| TCAAGCCAATTCTCTTCCCT+TGG | - | chr5_1:50952418-50952437 | Msa0735560:intron | 45.0% | |
| GTGATCCAAGGGAAGAGAAT+TGG | + | chr5_1:50952426-50952445 | None:intergenic | 45.0% | |
| ! | TTTTGGTACAGCTTCTTGGC+AGG | - | chr5_1:50952564-50952583 | Msa0735560:intron | 45.0% |
| TTTGGTACAGCTTCTTGGCA+GGG | - | chr5_1:50952565-50952584 | Msa0735560:intron | 45.0% | |
| ATCCAGATCTTGCTGGAGAT+CGG | - | chr5_1:50952612-50952631 | Msa0735560:intron | 45.0% | |
| GGAGTGATTATCATCACCCT+TGG | - | chr5_1:50952908-50952927 | Msa0735560:intron | 45.0% | |
| TCGATGCATCCTGAAAGATC+AGG | + | chr5_1:50953054-50953073 | None:intergenic | 45.0% | |
| AAAGCCATAACATGGTCTGG+TGG | + | chr5_1:50953077-50953096 | None:intergenic | 45.0% | |
| ! | GCTTTCTTGCTTGCTGAACT+GGG | - | chr5_1:50953092-50953111 | Msa0735560:intron | 45.0% |
| GGTACTAGTGGTTCTCTAGA+TGG | - | chr5_1:50953113-50953132 | Msa0735560:intron | 45.0% | |
| CTGGTTTATTGCTTGCAGTG+TGG | - | chr5_1:50953577-50953596 | Msa0735560:CDS | 45.0% | |
| TATTGCTTGCAGTGTGGATC+AGG | - | chr5_1:50953583-50953602 | Msa0735560:intron | 45.0% | |
| TCAGTTGCTCCAATCAAAGC+TGG | - | chr5_1:50953610-50953629 | Msa0735560:intron | 45.0% | |
| CGTTATGGGGTTGCCTTTAA+TGG | - | chr5_1:50953771-50953790 | Msa0735560:intron | 45.0% | |
| CGTCAAAAGACCACATTGTG+AGG | + | chr5_1:50954132-50954151 | None:intergenic | 45.0% | |
| !! | TCTGATAGTGGTATCCACCT+AGG | - | chr5_1:50954783-50954802 | Msa0735560:intron | 45.0% |
| !! | ACTCTATGACGGATCGTTTG+AGG | - | chr5_1:50954925-50954944 | Msa0735560:intron | 45.0% |
| !! | CTCTATGACGGATCGTTTGA+GGG | - | chr5_1:50954926-50954945 | Msa0735560:intron | 45.0% |
| AGAAGACTGTCACACACCAA+AGG | - | chr5_1:50955217-50955236 | Msa0735560:intron | 45.0% | |
| CACACCAAAGGTGACAATGA+AGG | - | chr5_1:50955229-50955248 | Msa0735560:intron | 45.0% | |
| ATGGCCTTCATTGTCACCTT+TGG | + | chr5_1:50955236-50955255 | None:intergenic | 45.0% | |
| TGGGTGCTTTAGTCCTGAAA+TGG | - | chr5_1:50955500-50955519 | Msa0735560:intron | 45.0% | |
| GGAAGTCTCTCTTGACATCT+TGG | - | chr5_1:50955521-50955540 | Msa0735560:intron | 45.0% | |
| !!! | AAAATGTAAATTTTTTTTAT+TGG | + | chr5_1:50950941-50950960 | None:intergenic | 5.0% |
| !!! | AAAAAAAATTTACATTTTAA+AGG | - | chr5_1:50950943-50950962 | Msa0735560:intron | 5.0% |
| !! | CAATTTATAATATAATTTAT+TGG | + | chr5_1:50952782-50952801 | None:intergenic | 5.0% |
| !! | CAATAAATTATATTATAAAT+TGG | - | chr5_1:50952780-50952799 | Msa0735560:intron | 5.0% |
| !!! | CAAAATTTTTTTTTTTTTTT+TGG | + | chr5_1:50954109-50954128 | None:intergenic | 5.0% |
| !! | AAATTAATAAAAAATCAATT+TGG | + | chr5_1:50954233-50954252 | None:intergenic | 5.0% |
| !! | TGAAAAATAAAAAATAAAAT+TGG | + | chr5_1:50954990-50955009 | None:intergenic | 5.0% |
| ACCAAGTGGTTTGAAGGAGG+AGG | - | chr5_1:50950488-50950507 | Msa0735560:intron | 50.0% | |
| ACCTCCTCCTTCAAACCACT+TGG | + | chr5_1:50950492-50950511 | None:intergenic | 50.0% | |
| AGGTTGACAAGCGCAGATAG+CGG | + | chr5_1:50950673-50950692 | None:intergenic | 50.0% | |
| CTATCTGCGCTTGTCAACCT+TGG | - | chr5_1:50950673-50950692 | Msa0735560:intron | 50.0% | |
| CGGGATGCATTGTAGTGAGT+CGG | - | chr5_1:50951145-50951164 | Msa0735560:intron | 50.0% | |
| GGGATGCATTGTAGTGAGTC+GGG | - | chr5_1:50951146-50951165 | Msa0735560:intron | 50.0% | |
| GCATTAGCAATCTCCTGGCA+TGG | - | chr5_1:50951509-50951528 | Msa0735560:intron | 50.0% | |
| ! | GGGACTGACAGTGCATTTTC+TGG | - | chr5_1:50951612-50951631 | Msa0735560:intron | 50.0% |
| TCTTCAACTGCCTCTCCACT+AGG | + | chr5_1:50951796-50951815 | None:intergenic | 50.0% | |
| CTTTGCAGCCTCGTTATCCT+TGG | - | chr5_1:50951996-50952015 | Msa0735560:intron | 50.0% | |
| AGCCTCGTTATCCTTGGGAA+GGG | - | chr5_1:50952002-50952021 | Msa0735560:intron | 50.0% | |
| ATCGGCGAAGGACAGTTATG+AGG | - | chr5_1:50952630-50952649 | Msa0735560:intron | 50.0% | |
| CCTTCACGAAGAACTTGAGG+AGG | + | chr5_1:50952656-50952675 | None:intergenic | 50.0% | |
| CCTCCTCAAGTTCTTCGTGA+AGG | - | chr5_1:50952653-50952672 | Msa0735560:CDS | 50.0% | |
| GTGCCTTCACGAAGAACTTG+AGG | + | chr5_1:50952659-50952678 | None:intergenic | 50.0% | |
| TCGACCACCAGACCATGTTA+TGG | - | chr5_1:50953070-50953089 | Msa0735560:intron | 50.0% | |
| ! | GGCTTTCTTGCTTGCTGAAC+TGG | - | chr5_1:50953091-50953110 | Msa0735560:intron | 50.0% |
| CTTGCTGAACTGGGTACTAG+TGG | - | chr5_1:50953101-50953120 | Msa0735560:intron | 50.0% | |
| AGGAATGCCGGAGCATGATT+TGG | - | chr5_1:50953655-50953674 | Msa0735560:intron | 50.0% | |
| AGTACGGCCAAATCATGCTC+CGG | + | chr5_1:50953665-50953684 | None:intergenic | 50.0% | |
| AACCACCCGTACAGAAGTCA+TGG | - | chr5_1:50955578-50955597 | Msa0735560:intron | 50.0% | |
| ATCCATGACTTCTGTACGGG+TGG | + | chr5_1:50955583-50955602 | None:intergenic | 50.0% | |
| TTTATGGGGGTTTGGAGGGG+AGG | - | chr5_1:50950228-50950247 | Msa0735560:intron | 55.0% | |
| TGAGAGTGGTCCTAGTGGAG+AGG | - | chr5_1:50951783-50951802 | Msa0735560:intron | 55.0% | |
| CAGCCTCGTTATCCTTGGGA+AGG | - | chr5_1:50952001-50952020 | Msa0735560:intron | 55.0% | |
| CTCCCTTCCCAAGGATAACG+AGG | + | chr5_1:50952007-50952026 | None:intergenic | 55.0% | |
| GAACACGGCTCGTGATCCAA+GGG | + | chr5_1:50952437-50952456 | None:intergenic | 55.0% | |
| TGAACACGGCTCGTGATCCA+AGG | + | chr5_1:50952438-50952457 | None:intergenic | 55.0% | |
| ATCTTGCTGGAGATCGGCGA+AGG | - | chr5_1:50952618-50952637 | Msa0735560:intron | 55.0% | |
| !!! | GCTGGTTTTGTTGCCCGTGT+TGG | - | chr5_1:50953628-50953647 | Msa0735560:intron | 55.0% |
| ! | TTGTTGCCCGTGTTGGCAGA+AGG | - | chr5_1:50953635-50953654 | Msa0735560:intron | 55.0% |
| GGCATTCCTTCTGCCAACAC+GGG | + | chr5_1:50953644-50953663 | None:intergenic | 55.0% | |
| CGGCATTCCTTCTGCCAACA+CGG | + | chr5_1:50953645-50953664 | None:intergenic | 55.0% | |
| ! | CGTGTTGGCAGAAGGAATGC+CGG | - | chr5_1:50953643-50953662 | Msa0735560:intron | 55.0% |
| ATCGCGGCGAGAAAACTGCG+AGG | + | chr5_1:50949927-50949946 | None:intergenic | 60.0% | |
| TCACGGTCACTCCCTTCCCA+AGG | + | chr5_1:50952016-50952035 | None:intergenic | 60.0% | |
| CGCCGATCTCCAGCAAGATC+TGG | + | chr5_1:50952617-50952636 | None:intergenic | 60.0% | |
| TGGGGGTTTGGAGGGGAGGA+AGG | - | chr5_1:50950232-50950251 | Msa0735560:intron | 65.0% | |
| GGGGGTTTGGAGGGGAGGAA+GGG | - | chr5_1:50950233-50950252 | Msa0735560:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 50949507 | 50955847 | 50949507 | ID=Msa0735560;Name=Msa0735560 |
| chr5_1 | mRNA | 50949507 | 50955847 | 50949507 | ID=Msa0735560-mRNA-1;Parent=Msa0735560;Name=Msa0735560-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.9|0.81|1|0.8|0.63|11|227|319 |
| chr5_1 | exon | 50949507 | 50949684 | 50949507 | ID=Msa0735560-mRNA-1:exon:14371;Parent=Msa0735560-mRNA-1 |
| chr5_1 | exon | 50951633 | 50951759 | 50951633 | ID=Msa0735560-mRNA-1:exon:14370;Parent=Msa0735560-mRNA-1 |
| chr5_1 | exon | 50951839 | 50951924 | 50951839 | ID=Msa0735560-mRNA-1:exon:14369;Parent=Msa0735560-mRNA-1 |
| chr5_1 | exon | 50952148 | 50952290 | 50952148 | ID=Msa0735560-mRNA-1:exon:14368;Parent=Msa0735560-mRNA-1 |
| chr5_1 | exon | 50952634 | 50952779 | 50952634 | ID=Msa0735560-mRNA-1:exon:14367;Parent=Msa0735560-mRNA-1 |
| chr5_1 | exon | 50953303 | 50953391 | 50953303 | ID=Msa0735560-mRNA-1:exon:14366;Parent=Msa0735560-mRNA-1 |
| chr5_1 | exon | 50953531 | 50953600 | 50953531 | ID=Msa0735560-mRNA-1:exon:14365;Parent=Msa0735560-mRNA-1 |
| chr5_1 | exon | 50953695 | 50953750 | 50953695 | ID=Msa0735560-mRNA-1:exon:14364;Parent=Msa0735560-mRNA-1 |
| chr5_1 | exon | 50953871 | 50953982 | 50953871 | ID=Msa0735560-mRNA-1:exon:14363;Parent=Msa0735560-mRNA-1 |
| chr5_1 | exon | 50954836 | 50954885 | 50954836 | ID=Msa0735560-mRNA-1:exon:14362;Parent=Msa0735560-mRNA-1 |
| chr5_1 | exon | 50955718 | 50955847 | 50955718 | ID=Msa0735560-mRNA-1:exon:14361;Parent=Msa0735560-mRNA-1 |
| chr5_1 | CDS | 50955718 | 50955847 | 50955718 | ID=Msa0735560-mRNA-1:cds;Parent=Msa0735560-mRNA-1 |
| chr5_1 | CDS | 50954836 | 50954885 | 50954836 | ID=Msa0735560-mRNA-1:cds;Parent=Msa0735560-mRNA-1 |
| chr5_1 | CDS | 50953871 | 50953982 | 50953871 | ID=Msa0735560-mRNA-1:cds;Parent=Msa0735560-mRNA-1 |
| chr5_1 | CDS | 50953695 | 50953750 | 50953695 | ID=Msa0735560-mRNA-1:cds;Parent=Msa0735560-mRNA-1 |
| chr5_1 | CDS | 50953531 | 50953600 | 50953531 | ID=Msa0735560-mRNA-1:cds;Parent=Msa0735560-mRNA-1 |
| chr5_1 | CDS | 50953303 | 50953391 | 50953303 | ID=Msa0735560-mRNA-1:cds;Parent=Msa0735560-mRNA-1 |
| chr5_1 | CDS | 50952634 | 50952779 | 50952634 | ID=Msa0735560-mRNA-1:cds;Parent=Msa0735560-mRNA-1 |
| chr5_1 | CDS | 50952148 | 50952290 | 50952148 | ID=Msa0735560-mRNA-1:cds;Parent=Msa0735560-mRNA-1 |
| chr5_1 | CDS | 50951839 | 50951924 | 50951839 | ID=Msa0735560-mRNA-1:cds;Parent=Msa0735560-mRNA-1 |
| chr5_1 | CDS | 50951682 | 50951759 | 50951682 | ID=Msa0735560-mRNA-1:cds;Parent=Msa0735560-mRNA-1 |
| chr5_1 | three_prime_UTR | 50951633 | 50951681 | 50951633 | ID=Msa0735560-mRNA-1:three_prime_utr;Parent=Msa0735560-mRNA-1 |
| chr5_1 | three_prime_UTR | 50949507 | 50949684 | 50949507 | ID=Msa0735560-mRNA-1:three_prime_utr;Parent=Msa0735560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
