AlfalfaGEDB | Msa0029240

M. sativa cultivar zhongmu-4 / Msa0029240

KEGG: K14794
GO: -
PFAM: PF08161.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0029240	XP_003590714.2	97.283	1288	31	2	1	1284	1	1288	0.0	2568

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0029240	sp\|Q5ZKD5\|RRP12_CHICK	26.782	1277	761	35	18	1239	106	1263	1.26e-104	364

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0029240	0.814348	1.612627e-51	-8.615850e-47
Msa0006110	Msa0029240	0.842844	2.017576e-58	-8.615850e-47
Msa0007440	Msa0029240	0.832522	9.010829e-56	-8.615850e-47
Msa0011960	Msa0029240	0.810572	1.078362e-50	-8.615850e-47
Msa0015090	Msa0029240	0.812662	3.787176e-51	-8.615850e-47
Msa0021210	Msa0029240	0.803404	3.542235e-49	-8.615850e-47
Msa0026710	Msa0029240	0.805350	1.392993e-49	-8.615850e-47
Msa0027770	Msa0029240	0.817853	2.658887e-52	-8.615850e-47
Msa0029240	Msa0030200	0.817790	2.746669e-52	-8.615850e-47
Msa0029240	Msa0031180	0.830118	3.515382e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0029240	MtrunA17_Chr1g0185981	97.283	1288	31	2	1	1284	1	1288	0.0	2568
Msa0029240	MtrunA17_Chr1g0185991	85.945	1302	154	7	1	1284	1	1291	0.0	2243
Msa0029240	MtrunA17_Chr1g0173231	28.698	1129	738	23	10	1103	8	1104	1.82e-105	360

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0029240	AT2G34357.1	52.747	1274	566	16	16	1281	24	1269	0.0	1227
Msa0029240	AT4G23540.1	28.479	1078	691	24	14	1051	18	1055	4.93e-109	371

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Find 268 sgRNAs with CRISPR-Local

Find 585 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGAACCTGATATTCG+TGG	0.488875	1_1:+54538232	Msa0029240:CDS
AAAGAATAAAGAGATAACCA+AGG	0.711747	1_1:+54541650	Msa0029240:CDS
AAATATGCGACTGGGGAAGA+AGG	0.485097	1_1:-54535036	None:intergenic
AAATCTACAAAAGATGATGG+TGG	0.698268	1_1:+54538454	Msa0029240:CDS
AAATGCTGGTGAAGGAACTA+AGG	0.500927	1_1:+54536077	Msa0029240:CDS
AACAGAAAATTTGAGGGCAT+TGG	0.453453	1_1:+54538384	Msa0029240:CDS
AACCTTTAATAAACCAAGAT+TGG	0.349531	1_1:-54541768	None:intergenic
AACGATAACAATCGAGAGAA+TGG	0.443579	1_1:-54535136	None:intergenic
AACGGCAAGGCAATATCTAG+AGG	0.609750	1_1:+54542833	Msa0029240:CDS
AACTCTCCTTACTTTATGAG+AGG	0.585087	1_1:+54537120	Msa0029240:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAATTGCATATATCATCGT+TGG	-	chr1_1:54534920-54534939	None:intergenic	30.0%
TTCATAGAGATAGTGTTCAT+TGG	+	chr1_1:54535295-54535314	Msa0029240:CDS	30.0%
TAACAAAAGATTGAACAACG+TGG	-	chr1_1:54535331-54535350	None:intergenic	30.0%
TAATTCACGAATAGTTACCT+TGG	-	chr1_1:54535376-54535395	None:intergenic	30.0%
TCGAATGTTAGAGATGAAAA+GGG	-	chr1_1:54535700-54535719	None:intergenic	30.0%
TTCGAATGTTAGAGATGAAA+AGG	-	chr1_1:54535701-54535720	None:intergenic	30.0%
TACTTTGTTCATGCAATAGT+TGG	+	chr1_1:54535735-54535754	Msa0029240:intron	30.0%
ACTTTGTTCATGCAATAGTT+GGG	+	chr1_1:54535736-54535755	Msa0029240:intron	30.0%
ACAAGGTCAGCAAATTAAAA+TGG	-	chr1_1:54535778-54535797	None:intergenic	30.0%
GAAAGTTTATCAAGACATCA+CGG	-	chr1_1:54535972-54535991	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	54534770	54543938	54534770	ID=Msa0029240;Name=Msa0029240
chr1_1	mRNA	54534770	54543938	54534770	ID=Msa0029240-mRNA-1;Parent=Msa0029240;Name=Msa0029240-mRNA-1;_AED=0.07;_eAED=0.07;_QI=104\|1\|1\|1\|1\|1\|18\|214\|1284
chr1_1	exon	54534770	54535377	54534770	ID=Msa0029240-mRNA-1:exon:16210;Parent=Msa0029240-mRNA-1
chr1_1	exon	54535943	54536465	54535943	ID=Msa0029240-mRNA-1:exon:16211;Parent=Msa0029240-mRNA-1
chr1_1	exon	54536554	54536805	54536554	ID=Msa0029240-mRNA-1:exon:16212;Parent=Msa0029240-mRNA-1
chr1_1	exon	54537115	54537206	54537115	ID=Msa0029240-mRNA-1:exon:16213;Parent=Msa0029240-mRNA-1
chr1_1	exon	54537797	54538006	54537797	ID=Msa0029240-mRNA-1:exon:16214;Parent=Msa0029240-mRNA-1
chr1_1	exon	54538085	54538486	54538085	ID=Msa0029240-mRNA-1:exon:16215;Parent=Msa0029240-mRNA-1
chr1_1	exon	54539289	54539458	54539289	ID=Msa0029240-mRNA-1:exon:16216;Parent=Msa0029240-mRNA-1
chr1_1	exon	54539610	54539703	54539610	ID=Msa0029240-mRNA-1:exon:16217;Parent=Msa0029240-mRNA-1
chr1_1	exon	54539800	54539853	54539800	ID=Msa0029240-mRNA-1:exon:16218;Parent=Msa0029240-mRNA-1
chr1_1	exon	54540042	54540233	54540042	ID=Msa0029240-mRNA-1:exon:16219;Parent=Msa0029240-mRNA-1
chr1_1	exon	54540396	54540455	54540396	ID=Msa0029240-mRNA-1:exon:16220;Parent=Msa0029240-mRNA-1
chr1_1	exon	54541287	54541400	54541287	ID=Msa0029240-mRNA-1:exon:16221;Parent=Msa0029240-mRNA-1
chr1_1	exon	54541510	54541671	54541510	ID=Msa0029240-mRNA-1:exon:16222;Parent=Msa0029240-mRNA-1
chr1_1	exon	54541767	54541895	54541767	ID=Msa0029240-mRNA-1:exon:16223;Parent=Msa0029240-mRNA-1
chr1_1	exon	54542010	54542111	54542010	ID=Msa0029240-mRNA-1:exon:16224;Parent=Msa0029240-mRNA-1
chr1_1	exon	54542186	54542265	54542186	ID=Msa0029240-mRNA-1:exon:16225;Parent=Msa0029240-mRNA-1
chr1_1	exon	54542757	54542900	54542757	ID=Msa0029240-mRNA-1:exon:16226;Parent=Msa0029240-mRNA-1
chr1_1	exon	54543154	54543938	54543154	ID=Msa0029240-mRNA-1:exon:16227;Parent=Msa0029240-mRNA-1
chr1_1	five_prime_UTR	54534770	54534873	54534770	ID=Msa0029240-mRNA-1:five_prime_utr;Parent=Msa0029240-mRNA-1
chr1_1	CDS	54534874	54535377	54534874	ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1	CDS	54535943	54536465	54535943	ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1	CDS	54536554	54536805	54536554	ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1	CDS	54537115	54537206	54537115	ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1	CDS	54537797	54538006	54537797	ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1	CDS	54538085	54538486	54538085	ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1	CDS	54539289	54539458	54539289	ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1	CDS	54539610	54539703	54539610	ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1	CDS	54539800	54539853	54539800	ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1	CDS	54540042	54540233	54540042	ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1	CDS	54540396	54540455	54540396	ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1	CDS	54541287	54541400	54541287	ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1	CDS	54541510	54541671	54541510	ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1	CDS	54541767	54541895	54541767	ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1	CDS	54542010	54542111	54542010	ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1	CDS	54542186	54542265	54542186	ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1	CDS	54542757	54542900	54542757	ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1	CDS	54543154	54543724	54543154	ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1	three_prime_UTR	54543725	54543938	54543725	ID=Msa0029240-mRNA-1:three_prime_utr;Parent=Msa0029240-mRNA-1

Gene Sequence

>Msa0029240

ATGGAAGGAATCGAAATGGAGCAACCAACATTCAACAACGAATCCAACGATGATATATGCAATTCAATTCTCTCTCGTTTCTCAAAATCCACCGCCGTTAACCACCAACACCTCTGCACCGTCATCGGCGCAATGTCACAGGAACTCAAAGACCACAACCTCCCTTCTTCCCCAGTCGCATATTTCGGCGCAACGTGCTCCTCCTTGAACCGCATCGTACCGGAACCTAATCCACCTGACCACGTCATCGAATCGCTTTTAACCATTCTCTCGATTGTTATCGTTAAAGTGCCCGTGGCTGTGTTGAAGAAGGAGAGAGAGTCTTTGTCTGAGCTTATTGTGAAAGTTATTCATTCTCCGCCGTCGAAAAATTCGGAGAGTGTCGTTGTTGATGGATTGAAGTGTGTTTCGCATTTGTTGATTCATAGAGATAGTGTTCATTGGTCTGATGTGTCCACGTTGTTCAATCTTTTGTTAGGATTTCTTACTGATTCACGATCCAAGGTAAGAAGGCAATCCCATTTGGGCCTCCGTGATGTCTTGATAAACTTTCAAAAGTCTTCACTATTAGCATCTGCGAGTGAAGGTGTCAAAAACCTACTTGAAAGGTTTTTACTGCTTGCTGGTGGAGCAAATGCAAATGCTGGTGAAGGAACTAAGGGAGCCCAACAGGTTTTGTATGTTCTTGATGCCTTGAAAGAATGCCTACCTTTGTTGTCACTAAAAGACAAGAACAGCATTCTCAAGCACTTCAAAACTCTATTGAATCTGCGTCAACCCCTAGTCACTAGGCGCATAATGGATGCTTTGAATTTTATCTGTCTTAACTCAACATCAGAAGTTTCCTCTGAAGCACTACTTGAGGTGTTGTGCACATTATCGGCTCTTTCTACCTCATCAAATGAGATTTCTGGAGATGGTATGACATTTACTGCTCGCTTGCTTGATGCTGGAATGAAGAAAGTTTTTTCTCTGAACAGGCAAATGTGTGTAATTAAGCTTCCCAGTGTTTTCAGTGATCTCAAAGATATTTTGGCATCTGAACATGAAGAGGCCATATTCGCAGCCACAGATGCACTCAAAAGCATGATCAATTATTGCATTGATGAGAGTTTGATTAAACAGGGAGTGGATCAGATAACTCTGGATGAATCAAGGAGATCAGGACCAACCATTATTGAGAAAATTTGTGCAACTGTTGAGAGCTTACTTGATTATCACTATGCTGCTGCCTGGGACAGAGTTTTTGATGTTGTTTCCGCAATGTTTCACAAATTAGGAAGTAACTCTCCTTACTTTATGAGAGGTATACTCAAAAACTTGGAAGATATGCAGAAGCTGCCTGATGAAGATTTTCCCTTTAGGAAACAGCTTCATACGTGCCTTGGATCAGCCCTTGTTGCAATGGGACCTGAAACTTTCTTATCCTTTATACCATTGAATTTGGAAGCTGAAGATTTATCTGTGTCAAATATATGGCTTTTTCCCATTTTAAAACAGTATATTGTTGGTGCACATCTAAAATATTTTACCGACGAAATTTTGCCTATGATTGGACGTATTAGGGAGAAGGCTCAAAAGCTTGAGAAGCAGGGACTGACAGTGTCATCAAGGAATGCAGACGCACTTGCTTACTCTTTGTGGTCTTTACTGCCTTCATTTTGTAACTATCCTTCAGACACAGCTAAAAGCTTCAAGGATCTAGAGAGACATTTACGTAGTACACTAAAAGAAGAACCTGATATTCGTGGAATAATATGCACTAGCTTGCAGCTTCTGATTAGACAAAACAAGAACATAAAGGACTCAAATGATAAAGATGATATTGGGCAAGATATGGCCAAAGAACAAGTCTTGGTTAATTACTCGCAACAGGTTGCAACAGAAAATTTGAGGGCATTGGAGATATCTGCCAAGAACTTGTTGAAAGATCTGTCAGACGTGTTCCTGAAATCTACAAAAGATGATGGTGGTTGTTTGCAGGGCACAATTAGTGACATTGCTTCTATAGCAGAAAAGAAAGTCGTACAAAACTTATTTAAGAAGAAGATGTCAGACCTCTTAAAATGTACTCAAAATGCCAACAGAATAGATGGTTCAGACAGCTCTATGCAGATTGATGCATCAAATGATGACTCTCAATCAGTTCTCAGGGCGCGGCTTCTTGATTTCGCAGTTTCATTGTTGCCTGGATTAGATACAAAAGATATTGATTTATTATTTCAAGTATTAAAGCCAGCATTGCAGGATGTTGGTGTCATGCAGAAGAAGGCATACAAAGTTCTCTCGATCATACTCAGGAGCTCGGATAGTTTTGTTTCATCGAAGCTTGAGGTTCTGCTTGGGCTTATGGTTGAAATTCTTCCTTGCCATTCTTCTGCCAAACGCCATAGACTTGATTGCCTTTACTTTTTGATACTCCATGTCATGAAGTCCGAGGCAGTCAAAGTTGAGTTCCTTTACTTCTTAACAGTCCAAGACTCGAAATCAAAGGATGATTCAATGGCCTGGCCAGAAGTTTTCCTCACTGAGATAATACTGGCTCTTAAAGAGGCTAATAAGAAAACCAGGAACAGGGCTTATGACATTCTGGTCGAAGTCGCCCATGCATTTGGAGACGAGGAGAAAGGTGGGAACAGAAATAACCTCTATCAATTTTTTATCAAGGTTGCTCGCGGCCTTGTTGGAAAAACTCCACATATGATAAGTGCAACCGTCAAAGGTTTAGCTCGCTTGGCCTATGAATTCTCTGACCTTGCTTTAACTGCTTTTGATTTGCTTCCATCTACATTTGTCCTGCTCGAAAAAAAGAATAAAGAGATAACCAAGGCCAATCTTGGTTTATTAAAGGTTTTAGTAGCCAAATCACAAGCAGAAGGATTGCAAATGCATCTGAAGAGCGTGGTTGAGTGTTTGTTTCAGTGGCAAGATGAAGCCAAAAATCATTTTAAAGCAAAGGTCAAACTTCTTTTAGGGATGCTTATCACGAAGTGTGGATTGGAGGCTGTTAAAGCTGTCCTGCCTGATGAACATATGAAACTTCTGACCAACATACGCAAGATCAAGGAGCGGAAAGAGAGGAACCGAGGTGCTAAATCTGAAGAAACCAGGTCTCATGTTTCAAAAGCAACTACATCCAGGAAAAGTAGATGGAACCATACTGATATTTTTTCGGAGTTTGATGGAGACAGCAAAGGTAGTGATGCAGAATACCTGAACGGCAAGGCAATATCTAGAGGGGGTAAATCTTCCACACATCTCAAATCAGCAGCATCGTCATTCAGGTCCAAGATGAGACTAAAAAACAATATTCCTGAGCACTTGTCTGACGAATCAGATGACGAGCCACTTGATTTGCTTGATCGGCAGAAAGTAAGGTCTGCTCTTAGATCTGAGAATCTCAAAAGGAAGTCCAGGTCAGACGATGATGAGATGGAGGTAGATTCTGAAGGACGTTTGATTATCCGGGAGGAAAGGGAGACGGAGGAAAAACCAGCCGATTCAGAATATGATGCTAGGAGTGAGCCTGATAGTCATTTGTCTGCAAGGTCCGGAACTAAAGCCCAAAAGCGGAGAAGAACAGCAGAGCCTGGTAGGGCTTACACTGGAAAGGAATATGCTAGCAAAAAAGCTGGTGGAGATATTAAGAGGAAGGATAAGCTTGAACCTTATGCATATTGGCCACTTGATCGAAAAATGATGAGTCGTCGGCCACAACATAGGGCTGCTGCAAAAAAAGGTATGGCTACTGTGGTAAATATGACAAAAAGGCTTGAAGGCAAGAGTGCCTCTGGCGTGCTTTCTATGAAGAGTATGAAACTAAAAAGAACTCAAAAGAAAGGTAGCAAGCAATAG

Protein sequence

>Msa0029240

MEGIEMEQPTFNNESNDDICNSILSRFSKSTAVNHQHLCTVIGAMSQELKDHNLPSSPVAYFGATCSSLNRIVPEPNPPDHVIESLLTILSIVIVKVPVAVLKKERESLSELIVKVIHSPPSKNSESVVVDGLKCVSHLLIHRDSVHWSDVSTLFNLLLGFLTDSRSKVRRQSHLGLRDVLINFQKSSLLASASEGVKNLLERFLLLAGGANANAGEGTKGAQQVLYVLDALKECLPLLSLKDKNSILKHFKTLLNLRQPLVTRRIMDALNFICLNSTSEVSSEALLEVLCTLSALSTSSNEISGDGMTFTARLLDAGMKKVFSLNRQMCVIKLPSVFSDLKDILASEHEEAIFAATDALKSMINYCIDESLIKQGVDQITLDESRRSGPTIIEKICATVESLLDYHYAAAWDRVFDVVSAMFHKLGSNSPYFMRGILKNLEDMQKLPDEDFPFRKQLHTCLGSALVAMGPETFLSFIPLNLEAEDLSVSNIWLFPILKQYIVGAHLKYFTDEILPMIGRIREKAQKLEKQGLTVSSRNADALAYSLWSLLPSFCNYPSDTAKSFKDLERHLRSTLKEEPDIRGIICTSLQLLIRQNKNIKDSNDKDDIGQDMAKEQVLVNYSQQVATENLRALEISAKNLLKDLSDVFLKSTKDDGGCLQGTISDIASIAEKKVVQNLFKKKMSDLLKCTQNANRIDGSDSSMQIDASNDDSQSVLRARLLDFAVSLLPGLDTKDIDLLFQVLKPALQDVGVMQKKAYKVLSIILRSSDSFVSSKLEVLLGLMVEILPCHSSAKRHRLDCLYFLILHVMKSEAVKVEFLYFLTVQDSKSKDDSMAWPEVFLTEIILALKEANKKTRNRAYDILVEVAHAFGDEEKGGNRNNLYQFFIKVARGLVGKTPHMISATVKGLARLAYEFSDLALTAFDLLPSTFVLLEKKNKEITKANLGLLKVLVAKSQAEGLQMHLKSVVECLFQWQDEAKNHFKAKVKLLLGMLITKCGLEAVKAVLPDEHMKLLTNIRKIKERKERNRGAKSEETRSHVSKATTSRKSRWNHTDIFSEFDGDSKGSDAEYLNGKAISRGGKSSTHLKSAASSFRSKMRLKNNIPEHLSDESDDEPLDLLDRQKVRSALRSENLKRKSRSDDDEMEVDSEGRLIIREERETEEKPADSEYDARSEPDSHLSARSGTKAQKRRRTAEPGRAYTGKEYASKKAGGDIKRKDKLEPYAYWPLDRKMMSRRPQHRAAAKKGMATVVNMTKRLEGKSASGVLSMKSMKLKRTQKKGSKQ*