AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0029240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0029240 MtrunA17_Chr1g0185981 97.283 1288 31 2 1 1284 1 1288 0.0 2568
Msa0029240 MtrunA17_Chr1g0185991 85.945 1302 154 7 1 1284 1 1291 0.0 2243
Msa0029240 MtrunA17_Chr1g0173231 28.698 1129 738 23 10 1103 8 1104 1.82e-105 360
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0029240 AT2G34357.1 52.747 1274 566 16 16 1281 24 1269 0.0 1227
Msa0029240 AT4G23540.1 28.479 1078 691 24 14 1051 18 1055 4.93e-109 371

Find 268 sgRNAs with CRISPR-Local

Find 585 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTGTTCTTCTCCGCTTT+TGG 0.114005 1_1:-54543433 None:intergenic
TTTACTTTGTGCAGATATTT+TGG 0.170487 1_1:+54536540 Msa0029240:intron
ATCCTTTATACCATTGAATT+TGG 0.176595 1_1:+54537850 Msa0029240:CDS
ACCTCATCAAATGAGATTTC+TGG 0.183929 1_1:+54536330 Msa0029240:CDS
TGAGGTTCTGCTTGGGCTTA+TGG 0.208576 1_1:+54540071 Msa0029240:CDS
CAGATCTTTCAACAAGTTCT+TGG 0.242536 1_1:-54538416 None:intergenic
GGCCAATCTTGGTTTATTAA+AGG 0.244569 1_1:+54541766 Msa0029240:intron
TGCCTATGATTGGACGTATT+AGG 0.272542 1_1:+54537969 Msa0029240:CDS
TCAAATGATAAAGATGATAT+TGG 0.273601 1_1:+54538310 Msa0029240:CDS
TCCGCAATGTTTCACAAATT+AGG 0.275204 1_1:+54536784 Msa0029240:CDS
ATTTATCTGTGTCAAATATA+TGG 0.275809 1_1:+54537882 Msa0029240:CDS
ATAAAGGATAAGAAAGTTTC+AGG 0.277939 1_1:-54537836 None:intergenic
TAGATATTGCCTTGCCGTTC+AGG 0.286455 1_1:-54542829 None:intergenic
ATTAACCAAGACTTGTTCTT+TGG 0.291284 1_1:-54538344 None:intergenic
GCCTATGATTGGACGTATTA+GGG 0.297196 1_1:+54537970 Msa0029240:CDS
CAATCCTTCTGCTTGTGATT+TGG 0.298079 1_1:-54541798 None:intergenic
CATATTATTCCACGAATATC+AGG 0.314917 1_1:-54538241 None:intergenic
CTGAAGGACGTTTGATTATC+CGG 0.320522 1_1:+54543315 Msa0029240:CDS
TGATGAGAGTTTGATTAAAC+AGG 0.320857 1_1:+54536630 Msa0029240:CDS
TGCATCTGTGGCTGCGAATA+TGG 0.321152 1_1:-54536581 None:intergenic
GTGTATTTATTTGATGATAA+AGG 0.321403 1_1:+54543763 Msa0029240:three_prime_UTR
AATCAGCAGCATCGTCATTC+AGG 0.322268 1_1:+54542879 Msa0029240:CDS
TCGGAGAGTGTCGTTGTTGA+TGG 0.330882 1_1:+54535246 Msa0029240:CDS
AGCTTGAACCTTATGCATAT+TGG 0.332365 1_1:+54543528 Msa0029240:CDS
AGTATTAAAGCCAGCATTGC+AGG 0.334576 1_1:+54539682 Msa0029240:CDS
CTGTGGTAAATATGACAAAA+AGG 0.345210 1_1:+54543618 Msa0029240:CDS
AACCTTTAATAAACCAAGAT+TGG 0.349531 1_1:-54541768 None:intergenic
TTCCAAATTCAATGGTATAA+AGG 0.353034 1_1:-54537852 None:intergenic
TCTTCCCCAGTCGCATATTT+CGG 0.358176 1_1:+54535039 Msa0029240:CDS
TGAGGTGTTGTGCACATTAT+CGG 0.358806 1_1:+54536299 Msa0029240:CDS
GTCGAAGTCGCCCATGCATT+TGG 0.359151 1_1:+54541326 Msa0029240:CDS
TTCAATTCCATTTCCGATCA+TGG 0.359263 1_1:+54534855 Msa0029240:exon
ATGACGTGGTCAGGTGGATT+AGG 0.364631 1_1:-54535099 None:intergenic
TTCTCCGTGTAGGCCAATCT+TGG 0.365341 1_1:+54541755 Msa0029240:intron
AGTTAGACCTGTTTCCTAAA+GGG 0.366515 1_1:-54537192 None:intergenic
ATTCCTTCCATGATCGGAAA+TGG 0.367716 1_1:-54534862 None:intergenic
ACGCACTTGCTTACTCTTTG+TGG 0.368574 1_1:+54538125 Msa0029240:CDS
GGTAAGAAGGCAATCCCATT+TGG 0.370830 1_1:+54535942 Msa0029240:intron
AGTAAAGGCAATCAAGTCTA+TGG 0.372158 1_1:-54540128 None:intergenic
CAAAATGCCAACAGAATAGA+TGG 0.394116 1_1:+54539379 Msa0029240:CDS
CTTGCAGACAAATGACTATC+AGG 0.396859 1_1:-54543395 None:intergenic
ATTATCACTATGCTGCTGCC+TGG 0.397194 1_1:+54536740 Msa0029240:CDS
GAACAGGGCTTATGACATTC+TGG 0.398126 1_1:+54541304 Msa0029240:CDS
CCTAGTCACTAGGCGCATAA+TGG 0.399891 1_1:+54536218 Msa0029240:CDS
TACTTTGCAGCTTGAGAAGC+AGG 0.404455 1_1:+54538075 Msa0029240:intron
CTAATAAGAAAACCAGGAAC+AGG 0.405034 1_1:+54541288 Msa0029240:CDS
TAGGTTGCTCGCGGCCTTGT+TGG 0.405180 1_1:+54541507 Msa0029240:intron
AGCGATTCGATGACGTGGTC+AGG 0.405656 1_1:-54535108 None:intergenic
TTTCCTCACTGAGATAATAC+TGG 0.407293 1_1:+54540422 Msa0029240:CDS
AATGTCATAAGCCCTGTTCC+TGG 0.407903 1_1:-54541300 None:intergenic
CGAAGCTTGAGGTTCTGCTT+GGG 0.409869 1_1:+54540064 Msa0029240:CDS
CAAATGATAAAGATGATATT+GGG 0.410170 1_1:+54538311 Msa0029240:CDS
AGACATCACGGAGGCCCAAA+TGG 0.410616 1_1:-54535957 None:intergenic
GGATCAGCCCTTGTTGCAAT+GGG 0.414422 1_1:+54537812 Msa0029240:CDS
CTTGGTTAATTACTCGCAAC+AGG 0.414607 1_1:+54538357 Msa0029240:CDS
TCGAAGCTTGAGGTTCTGCT+TGG 0.418257 1_1:+54540063 Msa0029240:CDS
AGATGATGGTGGTTGTTTGC+AGG 0.419096 1_1:+54538465 Msa0029240:CDS
AGAAGTTTCATATGTTCATC+AGG 0.419209 1_1:-54542073 None:intergenic
TTCGCAGTTTCATTGTTGCC+TGG 0.419426 1_1:+54539626 Msa0029240:CDS
CGTCAAAGGTTTAGCTCGCT+TGG 0.420509 1_1:+54541557 Msa0029240:CDS
GCAGAGGTGTTGGTGGTTAA+CGG 0.421525 1_1:-54534968 None:intergenic
ATCTCAGTGAGGAAAACTTC+TGG 0.421709 1_1:-54540414 None:intergenic
CTCCGACAAACCTGCAATGC+TGG 0.428906 1_1:-54539692 None:intergenic
CTAAAGGGAAAATCTTCATC+AGG 0.430536 1_1:-54537177 None:intergenic
CCTCCGTCTCCCTTTCCTCC+CGG 0.432851 1_1:-54543334 None:intergenic
TGGATCAGCCCTTGTTGCAA+TGG 0.440463 1_1:+54537811 Msa0029240:CDS
CAAAGGTAGGCATTCTTTCA+AGG 0.441898 1_1:-54536130 None:intergenic
TTCATAGAGATAGTGTTCAT+TGG 0.441962 1_1:+54535295 Msa0029240:CDS
AGATGATATTGGGCAAGATA+TGG 0.443019 1_1:+54538321 Msa0029240:CDS
AACGATAACAATCGAGAGAA+TGG 0.443579 1_1:-54535136 None:intergenic
GGTGCTAGAGCTAGCTAGCC+AGG 0.447326 1_1:+54534824 Msa0029240:five_prime_UTR
AGGAACTAAGGGAGCCCAAC+AGG 0.447331 1_1:+54536089 Msa0029240:CDS
TGCTTGATCGGCAGAAAGTA+AGG 0.447864 1_1:+54543225 Msa0029240:CDS
ACTGCTCGCTTGCTTGATGC+TGG 0.451373 1_1:+54536369 Msa0029240:CDS
TGAATTGCATATATCATCGT+TGG 0.452485 1_1:-54534917 None:intergenic
AACAGAAAATTTGAGGGCAT+TGG 0.453453 1_1:+54538384 Msa0029240:CDS
CCATTATGCGCCTAGTGACT+AGG 0.453764 1_1:-54536218 None:intergenic
CTCTAGCACCCACGGCGGCA+AGG 0.454758 1_1:-54534811 None:intergenic
ATTTGATGATAAAGGAAAGC+AGG 0.455540 1_1:+54543771 Msa0029240:three_prime_UTR
TCGAGCAGGACAAATGTAGA+TGG 0.455711 1_1:-54541624 None:intergenic
GTAAGAAGGCAATCCCATTT+GGG 0.457342 1_1:+54535943 Msa0029240:CDS
GCAATCAAGTCTATGGCGTT+TGG 0.458967 1_1:-54540121 None:intergenic
TCTTCAGCTTCCAAATTCAA+TGG 0.460919 1_1:-54537860 None:intergenic
AAGCTGGTGGAGATATTAAG+AGG 0.462137 1_1:+54543498 Msa0029240:CDS
CTTGAAGGCAAGAGTGCCTC+TGG 0.463007 1_1:+54543641 Msa0029240:CDS
GTGTTGGTGGTTAACGGCGG+TGG 0.463079 1_1:-54534962 None:intergenic
CTGGGGAAGAAGGGAGGTTG+TGG 0.464578 1_1:-54535026 None:intergenic
TCCCTAATACGTCCAATCAT+AGG 0.465765 1_1:-54537971 None:intergenic
ATGACTCTCAATCAGTTCTC+AGG 0.465961 1_1:+54539437 Msa0029240:CDS
ACGGTTGCACTTATCATATG+TGG 0.468050 1_1:-54541537 None:intergenic
TTCCGGTACGATGCGGTTCA+AGG 0.471050 1_1:-54535076 None:intergenic
ATACCTTTGATTTCGAGTCT+TGG 0.476758 1_1:-54540215 None:intergenic
ATTTCGATTCCTTCCATGAT+CGG 0.478506 1_1:-54534868 None:intergenic
AGTATACCTCTCATAAAGTA+AGG 0.479237 1_1:-54537126 None:intergenic
CTGGATGAATCAAGGAGATC+AGG 0.479568 1_1:+54536670 Msa0029240:CDS
TAGACAAAACAAGAACATAA+AGG 0.479604 1_1:+54538285 Msa0029240:CDS
AAATATGCGACTGGGGAAGA+AGG 0.485097 1_1:-54535036 None:intergenic
TTTCCAGTGTAAGCCCTACC+AGG 0.485366 1_1:-54543458 None:intergenic
TCTATAAACCCTTGCCGCCG+TGG 0.486137 1_1:+54534802 Msa0029240:five_prime_UTR
CATTATGCGCCTAGTGACTA+GGG 0.486726 1_1:-54536217 None:intergenic
AGACACAGCTAAAAGCTTCA+AGG 0.487391 1_1:+54538180 Msa0029240:CDS
AAAGAAGAACCTGATATTCG+TGG 0.488875 1_1:+54538232 Msa0029240:CDS
TGGTCAGGTGGATTAGGTTC+CGG 0.488914 1_1:-54535093 None:intergenic
CCTAGCATCATATTCTGAAT+CGG 0.488966 1_1:-54543366 None:intergenic
TGAAGGACGTTTGATTATCC+GGG 0.489005 1_1:+54543316 Msa0029240:CDS
TCTCCTCGTCTCCAAATGCA+TGG 0.489991 1_1:-54541337 None:intergenic
TAGTTAGACCTGTTTCCTAA+AGG 0.491566 1_1:-54537193 None:intergenic
CTTGGACTGTTAAGAAGTAA+AGG 0.492219 1_1:-54540197 None:intergenic
TTTGATTATCCGGGAGGAAA+GGG 0.492969 1_1:+54543325 Msa0029240:CDS
CATCTCATCATCGTCTGACC+TGG 0.494658 1_1:-54543282 None:intergenic
TCTTACTGATTCACGATCCA+AGG 0.496148 1_1:+54535356 Msa0029240:CDS
AGTCATTTGTCTGCAAGGTC+CGG 0.497944 1_1:+54543401 Msa0029240:CDS
AGGTTGCAACAGAAAATTTG+AGG 0.498991 1_1:+54538377 Msa0029240:CDS
GTTTCATATGTTCATCAGGC+AGG 0.499785 1_1:-54542069 None:intergenic
CAAGCGAGCTAAACCTTTGA+CGG 0.500697 1_1:-54541556 None:intergenic
AAATGCTGGTGAAGGAACTA+AGG 0.500927 1_1:+54536077 Msa0029240:CDS
TATTAGGGAGAAGGCTCAAA+AGG 0.501198 1_1:+54537985 Msa0029240:CDS
GAGTCGTCGGCCACAACATA+GGG 0.502468 1_1:+54543571 Msa0029240:CDS
CGGAGAAGAACAGCAGAGCC+TGG 0.503610 1_1:+54543440 Msa0029240:CDS
AGTGAGGAAAACTTCTGGCC+AGG 0.505041 1_1:-54540409 None:intergenic
GTTTGATTATCCGGGAGGAA+AGG 0.505910 1_1:+54543324 Msa0029240:CDS
CTCCTTGAACCGCATCGTAC+CGG 0.508711 1_1:+54535074 Msa0029240:CDS
ATGATAAGTGCAACCGTCAA+AGG 0.509071 1_1:+54541543 Msa0029240:CDS
GAGTTTGATTAAACAGGGAG+TGG 0.510391 1_1:+54536636 Msa0029240:CDS
TTGGATTCGTTGTTGAATGT+TGG 0.511127 1_1:-54534898 None:intergenic
TCCTTCTTCAACACAGCCAC+GGG 0.512188 1_1:-54535165 None:intergenic
GATCATGGAAGGAATCGAAA+TGG 0.513498 1_1:+54534870 Msa0029240:exon
GAAGAACAGCAGAGCCTGGT+AGG 0.515608 1_1:+54543444 Msa0029240:CDS
GAAGGATAGTTACAAAATGA+AGG 0.516245 1_1:-54538157 None:intergenic
TTAGATCTGAGAATCTCAAA+AGG 0.517424 1_1:+54543255 Msa0029240:CDS
TGAGTCGTCGGCCACAACAT+AGG 0.517871 1_1:+54543570 Msa0029240:CDS
AGATCAAGGAGCGGAAAGAG+AGG 0.518453 1_1:+54542184 Msa0029240:intron
GCTTATCACGAAGTGTGGAT+TGG 0.518922 1_1:+54542030 Msa0029240:CDS
GCATCATATTCTGAATCGGC+TGG 0.519730 1_1:-54543362 None:intergenic
GATCATTATTTGCAGGATGT+TGG 0.519934 1_1:+54539785 Msa0029240:intron
AGTTCTTACAACAGGTAAGA+AGG 0.519955 1_1:+54535929 Msa0029240:intron
CAATAACGCAGTCTTGAAGC+TGG 0.520527 1_1:-54543860 None:intergenic
CTGAAATCTACAAAAGATGA+TGG 0.520706 1_1:+54538451 Msa0029240:CDS
CTATAAACCCTTGCCGCCGT+GGG 0.522011 1_1:+54534803 Msa0029240:five_prime_UTR
TCAAGTGGCCAATATGCATA+AGG 0.523498 1_1:-54543536 None:intergenic
TGGTGGAGATATTAAGAGGA+AGG 0.524645 1_1:+54543502 Msa0029240:CDS
TCTAGCACCCACGGCGGCAA+GGG 0.524843 1_1:-54534810 None:intergenic
CTGCCGACAGGATGATTCAA+TGG 0.525113 1_1:+54540386 Msa0029240:intron
TTCAGGTCCCATTGCAACAA+GGG 0.527489 1_1:-54537819 None:intergenic
CAACACCTCTGCACCGTCAT+CGG 0.530998 1_1:+54534979 Msa0029240:CDS
AAGTTCTCTCGATCATACTC+AGG 0.531090 1_1:+54539831 Msa0029240:CDS
GTGCAGCTTCATACGTGCCT+TGG 0.531128 1_1:+54537791 Msa0029240:intron
AGCCACTTGATTTGCTTGAT+CGG 0.532416 1_1:+54543213 Msa0029240:CDS
GACATCACGGAGGCCCAAAT+GGG 0.532838 1_1:-54535956 None:intergenic
GATAATACTGGCTCTTAAAG+AGG 0.532942 1_1:+54540434 Msa0029240:CDS
GTCTGAACCATCTATTCTGT+TGG 0.538070 1_1:-54539386 None:intergenic
CGTCATCGGCGCAATGTCAC+AGG 0.538926 1_1:+54534993 Msa0029240:CDS
TATGGCCAAAGAACAAGTCT+TGG 0.539050 1_1:+54538339 Msa0029240:CDS
AGCAAGGTCAGAGAATTCAT+AGG 0.539362 1_1:-54541580 None:intergenic
CAAGAACATACAAAACCTGT+TGG 0.540635 1_1:-54536104 None:intergenic
AGATAACTCTGGATGAATCA+AGG 0.542333 1_1:+54536662 Msa0029240:CDS
TGTTGGTGTCATGCAGAAGA+AGG 0.543631 1_1:+54539802 Msa0029240:CDS
GTTGCGCCGAAATATGCGAC+TGG 0.543868 1_1:-54535045 None:intergenic
GACAGGATGATTCAATGGCC+TGG 0.544833 1_1:+54540391 Msa0029240:intron
AGAATCTCAAAAGGAAGTCC+AGG 0.546874 1_1:+54543264 Msa0029240:CDS
GGGATGCTTATCACGAAGTG+TGG 0.547145 1_1:+54542025 Msa0029240:CDS
ATTCCATTTCCGATCATGGA+AGG 0.548811 1_1:+54534859 Msa0029240:exon
TTATCACTATGCTGCTGCCT+GGG 0.549257 1_1:+54536741 Msa0029240:CDS
CACCTCAAGTAGTGCTTCAG+AGG 0.550298 1_1:-54536283 None:intergenic
GGTTGCAACAGAAAATTTGA+GGG 0.550727 1_1:+54538378 Msa0029240:CDS
TTTGCAGCAGCCCTATGTTG+TGG 0.551398 1_1:-54543581 None:intergenic
CTCCTTCTTCAACACAGCCA+CGG 0.551480 1_1:-54535166 None:intergenic
GATTCGTCAGACAAGTGCTC+AGG 0.554011 1_1:-54543182 None:intergenic
TCAACTAACCTTGCGTATGT+TGG 0.557578 1_1:-54542098 None:intergenic
TTTCAAAAGCAACTACATCC+AGG 0.559469 1_1:+54542244 Msa0029240:CDS
CTGATAGTCATTTGTCTGCA+AGG 0.559535 1_1:+54543396 Msa0029240:CDS
CGCCCATGCATTTGGAGACG+AGG 0.560462 1_1:+54541334 Msa0029240:CDS
CTGTGACATTGCGCCGATGA+CGG 0.561333 1_1:-54534992 None:intergenic
CGATGACGGTGCAGAGGTGT+TGG 0.562762 1_1:-54534978 None:intergenic
TGGTTGAGTGTTTGTTTCAG+TGG 0.562799 1_1:+54541840 Msa0029240:CDS
CTCCTCGTCTCCAAATGCAT+GGG 0.565443 1_1:-54541336 None:intergenic
GCATTTGGAGACGAGGAGAA+AGG 0.567246 1_1:+54541341 Msa0029240:CDS
AAGAACATACAAAACCTGTT+GGG 0.567767 1_1:-54536103 None:intergenic
CAGGTCAGACGATGATGAGA+TGG 0.570043 1_1:+54543283 Msa0029240:CDS
AGGGACTGACAGTGTCATCA+AGG 0.571222 1_1:+54538095 Msa0029240:CDS
GATTGGACGTATTAGGGAGA+AGG 0.572003 1_1:+54537976 Msa0029240:CDS
TATGGCGTTTGGCAGAAGAA+TGG 0.572032 1_1:-54540110 None:intergenic
AATATGCGACTGGGGAAGAA+GGG 0.573040 1_1:-54535035 None:intergenic
TCAAATGAGATTTCTGGAGA+TGG 0.575469 1_1:+54536336 Msa0029240:CDS
TTTGGCATCTGAACATGAAG+AGG 0.575489 1_1:+54536558 Msa0029240:CDS
TATCACGAAGTGTGGATTGG+AGG 0.576082 1_1:+54542033 Msa0029240:CDS
GAACTCAACTTTGACTGCCT+CGG 0.577235 1_1:-54540175 None:intergenic
GGGAGTGGATCAGATAACTC+TGG 0.577650 1_1:+54536651 Msa0029240:CDS
TGGTAGGGCTTACACTGGAA+AGG 0.581578 1_1:+54543460 Msa0029240:CDS
CCGATTCAGAATATGATGCT+AGG 0.582895 1_1:+54543366 Msa0029240:CDS
TGCGTCAACCCCTAGTCACT+AGG 0.585009 1_1:+54536208 Msa0029240:CDS
AACTCTCCTTACTTTATGAG+AGG 0.585087 1_1:+54537120 Msa0029240:CDS
TACAGGCTAATAAGAAAACC+AGG 0.585447 1_1:+54541282 Msa0029240:intron
GCCCGTGGCTGTGTTGAAGA+AGG 0.586372 1_1:+54535164 Msa0029240:CDS
ACCTAATTTGTGAAACATTG+CGG 0.586553 1_1:-54536785 None:intergenic
GTAGCCAAATCACAAGCAGA+AGG 0.588275 1_1:+54541794 Msa0029240:CDS
TATCCGGGAGGAAAGGGAGA+CGG 0.589078 1_1:+54543331 Msa0029240:CDS
AAGAACAGCAGAGCCTGGTA+GGG 0.589719 1_1:+54543445 Msa0029240:CDS
TTTCAGGTCCCATTGCAACA+AGG 0.591569 1_1:-54537820 None:intergenic
TTTGAGATCACTGAAAACAC+TGG 0.591847 1_1:-54536442 None:intergenic
GATTCGATGACGTGGTCAGG+TGG 0.592836 1_1:-54535105 None:intergenic
TTTGGAGACGAGGAGAAAGG+TGG 0.594862 1_1:+54541344 Msa0029240:CDS
TTGCGCCGAAATATGCGACT+GGG 0.595787 1_1:-54535044 None:intergenic
CTATTAGCATCTGCGAGTGA+AGG 0.596295 1_1:+54536003 Msa0029240:CDS
AATCAAAAGCAGTTAAAGCA+AGG 0.596980 1_1:-54541596 None:intergenic
TTGCAACAAGGGCTGATCCA+AGG 0.597962 1_1:-54537808 None:intergenic
TGACGGTGCAGAGGTGTTGG+TGG 0.598610 1_1:-54534975 None:intergenic
CTGCCTCGGACTTCATGACA+TGG 0.599170 1_1:-54540161 None:intergenic
ACTTTGCAGCTTGAGAAGCA+GGG 0.599256 1_1:+54538076 Msa0029240:intron
TTGGAGACGAGGAGAAAGGT+GGG 0.601042 1_1:+54541345 Msa0029240:CDS
CCGGGAGGAAAGGGAGACGG+AGG 0.601880 1_1:+54543334 Msa0029240:CDS
AATCATAGGCAAAATTTCGT+CGG 0.602575 1_1:-54537957 None:intergenic
GAAAGTTTATCAAGACATCA+CGG 0.603730 1_1:-54535969 None:intergenic
GAGTTTGATGGAGACAGCAA+AGG 0.604231 1_1:+54542791 Msa0029240:CDS
CTAGCTAGCTCTAGCACCCA+CGG 0.605293 1_1:-54534819 None:intergenic
AACGGCAAGGCAATATCTAG+AGG 0.609750 1_1:+54542833 Msa0029240:CDS
GGTGGAGCAAATGCAAATGC+TGG 0.613071 1_1:+54536063 Msa0029240:CDS
GATGAGAGTTTGATTAAACA+GGG 0.613401 1_1:+54536631 Msa0029240:CDS
AGTCCAAGACTCGAAATCAA+AGG 0.613427 1_1:+54540212 Msa0029240:CDS
AATAACGCAGTCTTGAAGCT+GGG 0.613618 1_1:-54543859 None:intergenic
TTCCTCTGAAGCACTACTTG+AGG 0.615882 1_1:+54536281 Msa0029240:CDS
ACGGCAAGGCAATATCTAGA+GGG 0.621924 1_1:+54542834 Msa0029240:CDS
GTAGCAGATTGATAGAGCCA+TGG 0.622425 1_1:+54543730 Msa0029240:three_prime_UTR
TGCCGATCAAGCAAATCAAG+TGG 0.625596 1_1:-54543215 None:intergenic
TTGCGCCGATGACGGTGCAG+AGG 0.626574 1_1:-54534984 None:intergenic
GAGCGGAAAGAGAGGAACCG+AGG 0.627235 1_1:+54542192 Msa0029240:CDS
TGTTATCGTTAAAGTGCCCG+TGG 0.627370 1_1:+54535149 Msa0029240:CDS
TGCTGCTGATTTGAGATGTG+TGG 0.628832 1_1:-54542867 None:intergenic
GATTAGGTTCCGGTACGATG+CGG 0.630939 1_1:-54535083 None:intergenic
AATGCTGGTGAAGGAACTAA+GGG 0.631940 1_1:+54536078 Msa0029240:CDS
TAATAAGAAAACCAGGAACA+GGG 0.632518 1_1:+54541289 Msa0029240:CDS
TCCAGAAATCTCATTTGATG+AGG 0.632522 1_1:-54536331 None:intergenic
GTCAGACGATGATGAGATGG+AGG 0.633184 1_1:+54543286 Msa0029240:CDS
TTGAGATCACTGAAAACACT+GGG 0.634526 1_1:-54536441 None:intergenic
GCAAATGCAAATGCTGGTGA+AGG 0.636144 1_1:+54536069 Msa0029240:CDS
GTGCTAGAGCTAGCTAGCCA+GGG 0.639534 1_1:+54534825 Msa0029240:five_prime_UTR
GTGCTAAATCTGAAGAAACC+AGG 0.641226 1_1:+54542214 Msa0029240:CDS
TGGAATTGAACAGTAAACCC+TGG 0.646580 1_1:-54534842 None:intergenic
GAGATGGAGGTAGATTCTGA+AGG 0.647548 1_1:+54543299 Msa0029240:CDS
ATGCGACTGGGGAAGAAGGG+AGG 0.648895 1_1:-54535032 None:intergenic
TTTCTTCAGATTTAGCACCT+CGG 0.650186 1_1:-54542209 None:intergenic
CGGCAAGGCAATATCTAGAG+GGG 0.653780 1_1:+54542835 Msa0029240:CDS
AGTTCTCTCGATCATACTCA+GGG 0.654484 1_1:+54539832 Msa0029240:CDS
GAGCCTGGTAGGGCTTACAC+TGG 0.656129 1_1:+54543455 Msa0029240:CDS
AATACACTTACAGTAAACCA+TGG 0.666124 1_1:-54543747 None:intergenic
ACTTCTGACCAACATACGCA+AGG 0.669281 1_1:+54542090 Msa0029240:CDS
TTGTGAGCTTAGGTTGCTCG+CGG 0.669687 1_1:+54541498 Msa0029240:intron
TGCAGAATACCTGAACGGCA+AGG 0.670993 1_1:+54542820 Msa0029240:CDS
CCGGAACTAAAGCCCAAAAG+CGG 0.676318 1_1:+54543420 Msa0029240:CDS
TTGTAAAACAGATCAAGGAG+CGG 0.680605 1_1:+54542175 Msa0029240:intron
AGGACGTTTGATTATCCGGG+AGG 0.685208 1_1:+54543319 Msa0029240:CDS
GGCAAGGCAATATCTAGAGG+GGG 0.687645 1_1:+54542836 Msa0029240:CDS
TTAAAAGCGATTCGATGACG+TGG 0.693941 1_1:-54535113 None:intergenic
AGTGATGCAGAATACCTGAA+CGG 0.696328 1_1:+54542815 Msa0029240:CDS
AAATCTACAAAAGATGATGG+TGG 0.698268 1_1:+54538454 Msa0029240:CDS
CGGTACGATGCGGTTCAAGG+AGG 0.699527 1_1:-54535073 None:intergenic
CTTCATAGAAAGCACGCCAG+AGG 0.701114 1_1:-54543657 None:intergenic
ACTCCATGTCATGAAGTCCG+AGG 0.707627 1_1:+54540158 Msa0029240:CDS
ATTATGCGCCTAGTGACTAG+GGG 0.709999 1_1:-54536216 None:intergenic
AAAGAATAAAGAGATAACCA+AGG 0.711747 1_1:+54541650 Msa0029240:CDS
TGCGCCGAAATATGCGACTG+GGG 0.717004 1_1:-54535043 None:intergenic
GAGGTGTTGGTGGTTAACGG+CGG 0.724078 1_1:-54534965 None:intergenic
GCAAATGCATCTGAAGAGCG+TGG 0.729213 1_1:+54541820 Msa0029240:CDS
CGTTTGGCAGAAGAATGGCA+AGG 0.732352 1_1:-54540105 None:intergenic
GAGCCAGTATTATCTCAGTG+AGG 0.735723 1_1:-54540425 None:intergenic
TAACAAAAGATTGAACAACG+TGG 0.787275 1_1:-54535328 None:intergenic
GCTAGCTCTAGCACCCACGG+CGG 0.792419 1_1:-54534816 None:intergenic
AGTTTATCAAGACATCACGG+AGG 0.840719 1_1:-54535966 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAATTTATATAGTTTGT+TGG + chr1_1:54536851-54536870 Msa0029240:intron 10.0%
!!! AATTATCTTATTTGATTTTT+CGG + chr1_1:54539550-54539569 Msa0029240:intron 10.0%
!! TGTTAAAAATATGAATAAAT+AGG - chr1_1:54541967-54541986 None:intergenic 10.0%
!!! GTTTTCAATTGTTATTTATA+AGG + chr1_1:54535647-54535666 Msa0029240:intron 15.0%
!!! TTGATTTGTTTTCTAAATTA+TGG + chr1_1:54535879-54535898 Msa0029240:intron 15.0%
!!! TATTTACCTGTTTTTTTTTT+TGG + chr1_1:54536497-54536516 Msa0029240:intron 15.0%
!! AAAAAATCTAACAGAAAAAA+CGG - chr1_1:54536948-54536967 None:intergenic 15.0%
!! TCATATCATACATATTAAAA+TGG + chr1_1:54537468-54537487 Msa0029240:intron 15.0%
!! CATATCATACATATTAAAAT+GGG + chr1_1:54537469-54537488 Msa0029240:intron 15.0%
!!! ACAATATACTGTTTTAAAAT+GGG - chr1_1:54537914-54537933 None:intergenic 15.0%
!!! AACAATATACTGTTTTAAAA+TGG - chr1_1:54537915-54537934 None:intergenic 15.0%
!!! ATTTTAAAACAGTATATTGT+TGG + chr1_1:54537914-54537933 Msa0029240:CDS 15.0%
!! ATTTCTATATTCATAATTGA+AGG - chr1_1:54539052-54539071 None:intergenic 15.0%
!! ATAGAAATAGAAGTTATATA+TGG + chr1_1:54539064-54539083 Msa0029240:intron 15.0%
!! ATAAAGAAAAATCAAATAGT+AGG - chr1_1:54539871-54539890 None:intergenic 15.0%
!! TATTAAAATAAATGCTACAT+GGG - chr1_1:54540510-54540529 None:intergenic 15.0%
!! TTATTAAAATAAATGCTACA+TGG - chr1_1:54540511-54540530 None:intergenic 15.0%
!!! GTATTTAGTTTTTAAGTAAT+AGG + chr1_1:54541068-54541087 Msa0029240:intron 15.0%
!!! ATTTGATTTTAGTTATTATG+TGG + chr1_1:54541152-54541171 Msa0029240:intron 15.0%
!!! TTTGATTTTAGTTATTATGT+GGG + chr1_1:54541153-54541172 Msa0029240:intron 15.0%
!!! AATTTTGAAGTTATTTTTAC+AGG + chr1_1:54541265-54541284 Msa0029240:intron 15.0%
!! AATATTTAATTAATAGCTCA+AGG - chr1_1:54541731-54541750 None:intergenic 15.0%
!! AAAAATATGAATAAATAGGT+TGG - chr1_1:54541963-54541982 None:intergenic 15.0%
!!! ATTTTGATAATTCTTTTATG+TGG + chr1_1:54542126-54542145 Msa0029240:intron 15.0%
!! AATTAGCATATATATTTGAA+AGG - chr1_1:54542371-54542390 None:intergenic 15.0%
!!! ATATATTAGTTCTATGATTA+GGG + chr1_1:54542613-54542632 Msa0029240:intron 15.0%
!! TTATTTGATATTGCATAAAT+TGG + chr1_1:54543015-54543034 Msa0029240:intron 15.0%
!!! TTTTAAATGTTTTGGACTTT+TGG + chr1_1:54535824-54535843 Msa0029240:intron 20.0%
!!! TTTAAATGTTTTGGACTTTT+GGG + chr1_1:54535825-54535844 Msa0029240:intron 20.0%
!! AAAAATCTAACAGAAAAAAC+GGG - chr1_1:54536947-54536966 None:intergenic 20.0%
!! TGAAATTATGTGAAATTGTA+AGG - chr1_1:54537028-54537047 None:intergenic 20.0%
!! TAGATACTGTTCATATAATT+GGG - chr1_1:54537322-54537341 None:intergenic 20.0%
!! TTAGATACTGTTCATATAAT+TGG - chr1_1:54537323-54537342 None:intergenic 20.0%
!!! ATTGAATTTCTATTGATTCA+TGG + chr1_1:54537623-54537642 Msa0029240:intron 20.0%
!!! TTGAATTTCTATTGATTCAT+GGG + chr1_1:54537624-54537643 Msa0029240:intron 20.0%
!! ATTTATCTGTGTCAAATATA+TGG + chr1_1:54537882-54537901 Msa0029240:CDS 20.0%
!! TCAAATGATAAAGATGATAT+TGG + chr1_1:54538310-54538329 Msa0029240:CDS 20.0%
!! CAAATGATAAAGATGATATT+GGG + chr1_1:54538311-54538330 Msa0029240:CDS 20.0%
!! TATAATAAAAGCTGAAACAT+GGG - chr1_1:54538672-54538691 None:intergenic 20.0%
!! ATTGAAGTAAATATATGACA+AGG + chr1_1:54538919-54538938 Msa0029240:intron 20.0%
!! TTGAAGTAAATATATGACAA+GGG + chr1_1:54538920-54538939 Msa0029240:intron 20.0%
!! TCAGATTAATGAAGATATTT+CGG - chr1_1:54539109-54539128 None:intergenic 20.0%
!! TGAGGAATGAAATTAAAAAA+TGG - chr1_1:54539163-54539182 None:intergenic 20.0%
!!! ATGATTTTACTTCATTTACA+GGG + chr1_1:54539268-54539287 Msa0029240:intron 20.0%
!! AGTATACTTGTATATTTCTT+GGG + chr1_1:54540578-54540597 Msa0029240:intron 20.0%
!!! AGATATAACAATTTTACTCA+GGG - chr1_1:54541000-54541019 None:intergenic 20.0%
!!! AAGATATAACAATTTTACTC+AGG - chr1_1:54541001-54541020 None:intergenic 20.0%
!!! TTAGTTTTTAAGTAATAGGA+TGG + chr1_1:54541072-54541091 Msa0029240:intron 20.0%
!!! TAGTTTTTAAGTAATAGGAT+GGG + chr1_1:54541073-54541092 Msa0029240:intron 20.0%
!! AAAATAAAGATGAAAAAGCA+CGG - chr1_1:54541424-54541443 None:intergenic 20.0%
!!! TGTTTCATTTTCTATTTTGT+TGG + chr1_1:54541675-54541694 Msa0029240:intron 20.0%
!!! CTTTGCTTTAAAATGATTTT+TGG - chr1_1:54541876-54541895 None:intergenic 20.0%
!!! CAAAAATCATTTTAAAGCAA+AGG + chr1_1:54541874-54541893 Msa0029240:CDS 20.0%
!! TGAATAAAGGAAATAAATAC+AGG - chr1_1:54542277-54542296 None:intergenic 20.0%
!!! CATATATTAGTTCTATGATT+AGG + chr1_1:54542612-54542631 Msa0029240:intron 20.0%
!! ATATTGTGCTATAATGAATT+TGG + chr1_1:54542688-54542707 Msa0029240:intron 20.0%
!!! GTGTATTTATTTGATGATAA+AGG + chr1_1:54543763-54543782 Msa0029240:three_prime_UTR 20.0%
! AAATGTTTGCAATGATTTGA+TGG + chr1_1:54535461-54535480 Msa0029240:intron 25.0%
!! ATTTGATGGTTACTATTGAT+TGG + chr1_1:54535475-54535494 Msa0029240:intron 25.0%
! AAAAATTGTGAGCAAAATGA+CGG - chr1_1:54535610-54535629 None:intergenic 25.0%
!!! TCACAATTTTTTCGATGAAA+AGG + chr1_1:54535619-54535638 Msa0029240:intron 25.0%
!!! TTAAATGTTTTGGACTTTTG+GGG + chr1_1:54535826-54535845 Msa0029240:intron 25.0%
! AATTATGGTATATACTTGAG+TGG + chr1_1:54535894-54535913 Msa0029240:intron 25.0%
! TAGTTGCCAAAAAAAAAAAC+AGG - chr1_1:54536506-54536525 None:intergenic 25.0%
!!! GTTTTTTTTTTTGGCAACTA+TGG + chr1_1:54536506-54536525 Msa0029240:intron 25.0%
!! TTTACTTTGTGCAGATATTT+TGG + chr1_1:54536540-54536559 Msa0029240:intron 25.0%
!! CAAATTTTCTCAATAATGGT+TGG - chr1_1:54536697-54536716 None:intergenic 25.0%
!! TGCACAAATTTTCTCAATAA+TGG - chr1_1:54536701-54536720 None:intergenic 25.0%
! AAAAATCTAACAGAAAAACC+GGG - chr1_1:54537005-54537024 None:intergenic 25.0%
! GAAAAATCTAACAGAAAAAC+CGG - chr1_1:54537006-54537025 None:intergenic 25.0%
!! ATTTTCCACTGTATTATTTG+AGG - chr1_1:54537053-54537072 None:intergenic 25.0%
!!! AAGACATTCTACTTTTTTAC+AGG - chr1_1:54537355-54537374 None:intergenic 25.0%
! TGATGATTTCAAAAGCAAAT+AGG + chr1_1:54537398-54537417 Msa0029240:intron 25.0%
! AACCAACTTGATTATGATAT+TGG - chr1_1:54537681-54537700 None:intergenic 25.0%
! ATAAAGGATAAGAAAGTTTC+AGG - chr1_1:54537839-54537858 None:intergenic 25.0%
! ATCCTTTATACCATTGAATT+TGG + chr1_1:54537850-54537869 Msa0029240:CDS 25.0%
! TTCCAAATTCAATGGTATAA+AGG - chr1_1:54537855-54537874 None:intergenic 25.0%
! TAGACAAAACAAGAACATAA+AGG + chr1_1:54538285-54538304 Msa0029240:CDS 25.0%
! GTATAATAAAAGCTGAAACA+TGG - chr1_1:54538673-54538692 None:intergenic 25.0%
!!! TTCACTCATGGTATTTTAAT+TGG + chr1_1:54538719-54538738 Msa0029240:intron 25.0%
! TGAAGTAAATATATGACAAG+GGG + chr1_1:54538921-54538940 Msa0029240:intron 25.0%
!!! ATGAAGTACTCTTTTTTACT+TGG + chr1_1:54539217-54539236 Msa0029240:intron 25.0%
! TACTTGGTTTCTTGATATAT+AGG + chr1_1:54539233-54539252 Msa0029240:intron 25.0%
!! GATGATTTTACTTCATTTAC+AGG + chr1_1:54539267-54539286 Msa0029240:intron 25.0%
!!! CATTTTGAGTACATTTTAAG+AGG - chr1_1:54539366-54539385 None:intergenic 25.0%
!! ATATCTTTTGTATCTAATCC+AGG - chr1_1:54539647-54539666 None:intergenic 25.0%
! TTCAAATAGAAAAGTTACGA+TGG + chr1_1:54539755-54539774 Msa0029240:intron 25.0%
! TTATTGTGATCATTATTTGC+AGG + chr1_1:54539778-54539797 Msa0029240:intron 25.0%
! TTGGTTAAAATGTTCAATCA+CGG + chr1_1:54539900-54539919 Msa0029240:intron 25.0%
!!! AAATCAAAGGTATCCAAAAT+TGG + chr1_1:54540225-54540244 Msa0029240:intron 25.0%
!!! AATCAAAGGTATCCAAAATT+GGG + chr1_1:54540226-54540245 Msa0029240:intron 25.0%
!! TTGAATCAGTGTATTTCTTT+TGG + chr1_1:54540531-54540550 Msa0029240:intron 25.0%
! CAGTATACTTGTATATTTCT+TGG + chr1_1:54540577-54540596 Msa0029240:intron 25.0%
! ATTCAAGGAGTAAATAAACT+CGG + chr1_1:54540862-54540881 Msa0029240:intron 25.0%
! CCTTGATAAAAAATTGATAG+AGG - chr1_1:54541382-54541401 None:intergenic 25.0%
!!! CCTCTATCAATTTTTTATCA+AGG + chr1_1:54541379-54541398 Msa0029240:CDS 25.0%
! AAATCAAATTACTGTTGGTA+TGG - chr1_1:54541469-54541488 None:intergenic 25.0%
! AAAGAATAAAGAGATAACCA+AGG + chr1_1:54541650-54541669 Msa0029240:CDS 25.0%
! ATAGAAAATGAAACAAACCT+TGG - chr1_1:54541670-54541689 None:intergenic 25.0%
! AACCTTTAATAAACCAAGAT+TGG - chr1_1:54541771-54541790 None:intergenic 25.0%
!! GTTCTCTTCATTTTGAATAA+AGG - chr1_1:54542290-54542309 None:intergenic 25.0%
! TAAATTCAAAATCTCACAGA+GGG - chr1_1:54542330-54542349 None:intergenic 25.0%
! ATAAATTCAAAATCTCACAG+AGG - chr1_1:54542331-54542350 None:intergenic 25.0%
!!! GAACCATACTGATATTTTTT+CGG + chr1_1:54542769-54542788 Msa0029240:CDS 25.0%
!!! GTTAGTTGAAATTGATTTTC+AGG - chr1_1:54543110-54543129 None:intergenic 25.0%
!!! ATTGTTTTTTAGTCTCATCT+TGG - chr1_1:54543159-54543178 None:intergenic 25.0%
! CTAAAAAGAACTCAAAAGAA+AGG + chr1_1:54543689-54543708 Msa0029240:CDS 25.0%
TGAATTGCATATATCATCGT+TGG - chr1_1:54534920-54534939 None:intergenic 30.0%
TTCATAGAGATAGTGTTCAT+TGG + chr1_1:54535295-54535314 Msa0029240:CDS 30.0%
TAACAAAAGATTGAACAACG+TGG - chr1_1:54535331-54535350 None:intergenic 30.0%
! ACGTTGTTCAATCTTTTGTT+AGG + chr1_1:54535330-54535349 Msa0029240:CDS 30.0%
TAATTCACGAATAGTTACCT+TGG - chr1_1:54535376-54535395 None:intergenic 30.0%
! TACTATTGATTGGAGCTATA+TGG + chr1_1:54535485-54535504 Msa0029240:intron 30.0%
TCGAATGTTAGAGATGAAAA+GGG - chr1_1:54535700-54535719 None:intergenic 30.0%
TTCGAATGTTAGAGATGAAA+AGG - chr1_1:54535701-54535720 None:intergenic 30.0%
TACTTTGTTCATGCAATAGT+TGG + chr1_1:54535735-54535754 Msa0029240:intron 30.0%
ACTTTGTTCATGCAATAGTT+GGG + chr1_1:54535736-54535755 Msa0029240:intron 30.0%
ACAAGGTCAGCAAATTAAAA+TGG - chr1_1:54535778-54535797 None:intergenic 30.0%
!! TAAATGTTTTGGACTTTTGG+GGG + chr1_1:54535827-54535846 Msa0029240:intron 30.0%
GAAAGTTTATCAAGACATCA+CGG - chr1_1:54535972-54535991 None:intergenic 30.0%
AAGAACATACAAAACCTGTT+GGG - chr1_1:54536106-54536125 None:intergenic 30.0%
! TTGTCTTTTAGTGACAACAA+AGG - chr1_1:54536150-54536169 None:intergenic 30.0%
!!! AGAAAGTTTTTTCTCTGAAC+AGG + chr1_1:54536397-54536416 Msa0029240:CDS 30.0%
TGATGAGAGTTTGATTAAAC+AGG + chr1_1:54536630-54536649 Msa0029240:CDS 30.0%
GATGAGAGTTTGATTAAACA+GGG + chr1_1:54536631-54536650 Msa0029240:CDS 30.0%
! ACCTAATTTGTGAAACATTG+CGG - chr1_1:54536788-54536807 None:intergenic 30.0%
TCATTCCTCAAATAATACAG+TGG + chr1_1:54537045-54537064 Msa0029240:intron 30.0%
ATTACTGCTATATTCAATGC+AGG + chr1_1:54537093-54537112 Msa0029240:intron 30.0%
AGTATACCTCTCATAAAGTA+AGG - chr1_1:54537129-54537148 None:intergenic 30.0%
!!! TTTTGAGTTTCGTATTTGTG+TGG - chr1_1:54537251-54537270 None:intergenic 30.0%
TTGTCACAGAATAACTAACA+GGG - chr1_1:54537437-54537456 None:intergenic 30.0%
TTTGTCACAGAATAACTAAC+AGG - chr1_1:54537438-54537457 None:intergenic 30.0%
TTGATTCATGGGAATTTGAA+TGG + chr1_1:54537635-54537654 Msa0029240:intron 30.0%
!!! TGGTTTCCTGGTATTTTTTT+TGG + chr1_1:54537655-54537674 Msa0029240:intron 30.0%
TATTGGCCAAAAAAAATACC+AGG - chr1_1:54537664-54537683 None:intergenic 30.0%
!!! ATCAAGTTGGTTTTTGTTAG+AGG + chr1_1:54537689-54537708 Msa0029240:intron 30.0%
AATCATAGGCAAAATTTCGT+CGG - chr1_1:54537960-54537979 None:intergenic 30.0%
GAAGGATAGTTACAAAATGA+AGG - chr1_1:54538160-54538179 None:intergenic 30.0%
CATATTATTCCACGAATATC+AGG - chr1_1:54538244-54538263 None:intergenic 30.0%
! ATTAACCAAGACTTGTTCTT+TGG - chr1_1:54538347-54538366 None:intergenic 30.0%
! CATCATCTTTTGTAGATTTC+AGG - chr1_1:54538453-54538472 None:intergenic 30.0%
CTGAAATCTACAAAAGATGA+TGG + chr1_1:54538451-54538470 Msa0029240:CDS 30.0%
! AAATCTACAAAAGATGATGG+TGG + chr1_1:54538454-54538473 Msa0029240:CDS 30.0%
ATGTTGGCATAACATAAAAC+TGG + chr1_1:54538562-54538581 Msa0029240:intron 30.0%
!!! CATGGTATTTTAATTGGTTG+AGG + chr1_1:54538725-54538744 Msa0029240:intron 30.0%
!! GTACTGATCACTGTATTTTA+CGG + chr1_1:54538750-54538769 Msa0029240:intron 30.0%
! TATTTTACGGACAATGATTC+AGG + chr1_1:54538763-54538782 Msa0029240:intron 30.0%
! ATTTTACGGACAATGATTCA+GGG + chr1_1:54538764-54538783 Msa0029240:intron 30.0%
ATATTCATAATTGAAGGACG+TGG - chr1_1:54539046-54539065 None:intergenic 30.0%
!!! GATTGATTTTTTCGTGAAGT+TGG + chr1_1:54539494-54539513 Msa0029240:intron 30.0%
! ATAGAATTTCTTTTCATCCC+AGG + chr1_1:54539588-54539607 Msa0029240:intron 30.0%
! TAGAATTTCTTTTCATCCCA+GGG + chr1_1:54539589-54539608 Msa0029240:intron 30.0%
AATTTCAGTAATTCCTTGCA+AGG - chr1_1:54539730-54539749 None:intergenic 30.0%
TGGTTAAAATGTTCAATCAC+GGG + chr1_1:54539901-54539920 Msa0029240:intron 30.0%
! GCAGAAATGTTTTTCTAACA+TGG - chr1_1:54539990-54540009 None:intergenic 30.0%
! CATGGAGTATCAAAAAGTAA+AGG - chr1_1:54540146-54540165 None:intergenic 30.0%
! ACAACAAAAGTGTGCATTAA+GGG - chr1_1:54540272-54540291 None:intergenic 30.0%
!!! ATCCACACATTTTTTAGGTT+TGG + chr1_1:54540610-54540629 Msa0029240:intron 30.0%
!!! TCCACACATTTTTTAGGTTT+GGG + chr1_1:54540611-54540630 Msa0029240:intron 30.0%
TTCATCTTAGTGTTTACACA+TGG - chr1_1:54540798-54540817 None:intergenic 30.0%
ATCCAAAATGATGGTATTCA+AGG + chr1_1:54540847-54540866 Msa0029240:intron 30.0%
TTCAAGGAGTAAATAAACTC+GGG + chr1_1:54540863-54540882 Msa0029240:intron 30.0%
TTGAAGTAATATGTGCTTGT+TGG - chr1_1:54540962-54540981 None:intergenic 30.0%
!! TTTTAAGTAATAGGATGGGA+TGG + chr1_1:54541077-54541096 Msa0029240:intron 30.0%
GCTTGTGAAGTTAATTTAGA+TGG - chr1_1:54541231-54541250 None:intergenic 30.0%
TAATAAGAAAACCAGGAACA+GGG + chr1_1:54541289-54541308 Msa0029240:CDS 30.0%
AATTACTGTTGGTATGGTTA+AGG - chr1_1:54541463-54541482 None:intergenic 30.0%
GCACAAAATCAAATTACTGT+TGG - chr1_1:54541474-54541493 None:intergenic 30.0%
AATCAAAAGCAGTTAAAGCA+AGG - chr1_1:54541599-54541618 None:intergenic 30.0%
!!! CTTTATTCTTTTTTTCGAGC+AGG - chr1_1:54541641-54541660 None:intergenic 30.0%
!! AATATTTGTTTTCTCCGTGT+AGG + chr1_1:54541745-54541764 Msa0029240:intron 30.0%
!! GTGATTTCATTGATTTGTTG+AGG + chr1_1:54541918-54541937 Msa0029240:intron 30.0%
!! TTTCATTGATTTGTTGAGGA+TGG + chr1_1:54541922-54541941 Msa0029240:intron 30.0%
! GCGTCATTCAAATTATTTTC+AGG + chr1_1:54541988-54542007 Msa0029240:intron 30.0%
!! TTTCAGGTCAAACTTCTTTT+AGG + chr1_1:54542004-54542023 Msa0029240:intron 30.0%
! TTCAGGTCAAACTTCTTTTA+GGG + chr1_1:54542005-54542024 Msa0029240:intron 30.0%
AGAAGTTTCATATGTTCATC+AGG - chr1_1:54542076-54542095 None:intergenic 30.0%
TCCATTTGTAAAACAGATCA+AGG + chr1_1:54542170-54542189 Msa0029240:intron 30.0%
! TCCTTGATCTGTTTTACAAA+TGG - chr1_1:54542174-54542193 None:intergenic 30.0%
ATAAATACAGGATGAATACC+TGG - chr1_1:54542265-54542284 None:intergenic 30.0%
ATTTATCCACTTACATGTAG+TGG + chr1_1:54542345-54542364 Msa0029240:intron 30.0%
TTGAAGTTTAGTGAACTTCT+AGG + chr1_1:54542402-54542421 Msa0029240:intron 30.0%
TGAAGTTTAGTGAACTTCTA+GGG + chr1_1:54542403-54542422 Msa0029240:intron 30.0%
TGAAGTTTAGTGAACTTCTA+CGG + chr1_1:54542403-54542422 Msa0029240:intron 30.0%
TATCAATAACGATGCAAGAA+TGG + chr1_1:54542469-54542488 Msa0029240:intron 30.0%
TGTGCATATCTTAAGATTAG+CGG - chr1_1:54542512-54542531 None:intergenic 30.0%
!! GAAAAAGTGCGTCAATTTTT+GGG - chr1_1:54542568-54542587 None:intergenic 30.0%
!! AGAAAAAGTGCGTCAATTTT+TGG - chr1_1:54542569-54542588 None:intergenic 30.0%
!!! TCTTTTTCAGGAAAAGTAGA+TGG + chr1_1:54542747-54542766 Msa0029240:intron 30.0%
ACTCCGAAAAAATATCAGTA+TGG - chr1_1:54542775-54542794 None:intergenic 30.0%
!!! GATATTTTTTCGGAGTTTGA+TGG + chr1_1:54542779-54542798 Msa0029240:CDS 30.0%
ATACTTGAAGTCTTCATTCT+TGG + chr1_1:54542965-54542984 Msa0029240:intron 30.0%
GGTTCTTGATTAGTAATAAC+CGG + chr1_1:54543042-54543061 Msa0029240:intron 30.0%
CTTTATGCTATTGTAGGTTA+CGG - chr1_1:54543084-54543103 None:intergenic 30.0%
TTAGATCTGAGAATCTCAAA+AGG + chr1_1:54543255-54543274 Msa0029240:CDS 30.0%
CTGTGGTAAATATGACAAAA+AGG + chr1_1:54543618-54543637 Msa0029240:CDS 30.0%
AATATGACAAAAAGGCTTGA+AGG + chr1_1:54543626-54543645 Msa0029240:CDS 30.0%
AATACACTTACAGTAAACCA+TGG - chr1_1:54543750-54543769 None:intergenic 30.0%
! ATTTGATGATAAAGGAAAGC+AGG + chr1_1:54543771-54543790 Msa0029240:three_prime_UTR 30.0%
! ATAAAGGAAAGCAGGTTTTT+GGG + chr1_1:54543779-54543798 Msa0029240:three_prime_UTR 30.0%
TTCAATTCCATTTCCGATCA+TGG + chr1_1:54534855-54534874 Msa0029240:exon 35.0%
ATTTCGATTCCTTCCATGAT+CGG - chr1_1:54534871-54534890 None:intergenic 35.0%
TTGGATTCGTTGTTGAATGT+TGG - chr1_1:54534901-54534920 None:intergenic 35.0%
AACGATAACAATCGAGAGAA+TGG - chr1_1:54535139-54535158 None:intergenic 35.0%
GGCAATGTACAACTTGTATT+AGG - chr1_1:54535545-54535564 None:intergenic 35.0%
TACAAGTTGTACATTGCCTT+TGG + chr1_1:54535547-54535566 Msa0029240:intron 35.0%
ACAAGTTGTACATTGCCTTT+GGG + chr1_1:54535548-54535567 Msa0029240:intron 35.0%
CGAATGTTAGAGATGAAAAG+GGG - chr1_1:54535699-54535718 None:intergenic 35.0%
TTCATGCAATAGTTGGGATT+GGG + chr1_1:54535742-54535761 Msa0029240:intron 35.0%
TTCTACACAATACACACACA+AGG - chr1_1:54535795-54535814 None:intergenic 35.0%
AGTTCTTACAACAGGTAAGA+AGG + chr1_1:54535929-54535948 Msa0029240:intron 35.0%
GTGTCAAAAACCTACTTGAA+AGG + chr1_1:54536025-54536044 Msa0029240:CDS 35.0%
! GCAGTAAAAACCTTTCAAGT+AGG - chr1_1:54536038-54536057 None:intergenic 35.0%
CAAGAACATACAAAACCTGT+TGG - chr1_1:54536107-54536126 None:intergenic 35.0%
! CTTTTAGTGACAACAAAGGT+AGG - chr1_1:54536146-54536165 None:intergenic 35.0%
ACCTCATCAAATGAGATTTC+TGG + chr1_1:54536330-54536349 Msa0029240:CDS 35.0%
TCCAGAAATCTCATTTGATG+AGG - chr1_1:54536334-54536353 None:intergenic 35.0%
! TCAAATGAGATTTCTGGAGA+TGG + chr1_1:54536336-54536355 Msa0029240:CDS 35.0%
TTGAGATCACTGAAAACACT+GGG - chr1_1:54536444-54536463 None:intergenic 35.0%
! TTTGAGATCACTGAAAACAC+TGG - chr1_1:54536445-54536464 None:intergenic 35.0%
! AGTGTTTTCAGTGATCTCAA+AGG + chr1_1:54536444-54536463 Msa0029240:CDS 35.0%
AGATAACTCTGGATGAATCA+AGG + chr1_1:54536662-54536681 Msa0029240:CDS 35.0%
TCCGCAATGTTTCACAAATT+AGG + chr1_1:54536784-54536803 Msa0029240:CDS 35.0%
!! CTTGTTTCTGTTTCTTGCAT+TGG + chr1_1:54536827-54536846 Msa0029240:intron 35.0%
! AATTGTTGTTGTACTTCTCC+CGG + chr1_1:54536984-54537003 Msa0029240:intron 35.0%
AACTCTCCTTACTTTATGAG+AGG + chr1_1:54537120-54537139 Msa0029240:CDS 35.0%
! GAGAGGTATACTCAAAAACT+TGG + chr1_1:54537137-54537156 Msa0029240:CDS 35.0%
CTAAAGGGAAAATCTTCATC+AGG - chr1_1:54537180-54537199 None:intergenic 35.0%
! CTGATGAAGATTTTCCCTTT+AGG + chr1_1:54537178-54537197 Msa0029240:CDS 35.0%
!! AGATTTTCCCTTTAGGAAAC+AGG + chr1_1:54537185-54537204 Msa0029240:CDS 35.0%
AGTTAGACCTGTTTCCTAAA+GGG - chr1_1:54537195-54537214 None:intergenic 35.0%
TAGTTAGACCTGTTTCCTAA+AGG - chr1_1:54537196-54537215 None:intergenic 35.0%
AGTTTCGTATTTGTGTGGTT+TGG - chr1_1:54537246-54537265 None:intergenic 35.0%
GTTCATATAATTGGGACACA+TGG - chr1_1:54537314-54537333 None:intergenic 35.0%
GGCCAATATCATAATCAAGT+TGG + chr1_1:54537676-54537695 Msa0029240:intron 35.0%
!! TTGGTTTTTGTTAGAGGATC+TGG + chr1_1:54537695-54537714 Msa0029240:intron 35.0%
! TGGTTTTTGTTAGAGGATCT+GGG + chr1_1:54537696-54537715 Msa0029240:intron 35.0%
TCTTCAGCTTCCAAATTCAA+TGG - chr1_1:54537863-54537882 None:intergenic 35.0%
! GACGAAATTTTGCCTATGAT+TGG + chr1_1:54537959-54537978 Msa0029240:CDS 35.0%
TGAGTAGGAAATGAATACCA+TGG - chr1_1:54538052-54538071 None:intergenic 35.0%
AGCTGCAAAGTATAATGAGT+AGG - chr1_1:54538067-54538086 None:intergenic 35.0%
AAAGAAGAACCTGATATTCG+TGG + chr1_1:54538232-54538251 Msa0029240:CDS 35.0%
AGATGATATTGGGCAAGATA+TGG + chr1_1:54538321-54538340 Msa0029240:CDS 35.0%
AGGTTGCAACAGAAAATTTG+AGG + chr1_1:54538377-54538396 Msa0029240:CDS 35.0%
GGTTGCAACAGAAAATTTGA+GGG + chr1_1:54538378-54538397 Msa0029240:CDS 35.0%
! AACAGAAAATTTGAGGGCAT+TGG + chr1_1:54538384-54538403 Msa0029240:CDS 35.0%
CAGATCTTTCAACAAGTTCT+TGG - chr1_1:54538419-54538438 None:intergenic 35.0%
CTATAGTTGAGCCAAATGTA+TGG + chr1_1:54538506-54538525 Msa0029240:intron 35.0%
ATCATCATCAGTTTCACTCA+TGG + chr1_1:54538707-54538726 Msa0029240:intron 35.0%
AACTCCAAAGCACAAAATGT+TGG - chr1_1:54538828-54538847 None:intergenic 35.0%
TGGACAACTAATGAGCAATA+CGG - chr1_1:54538983-54539002 None:intergenic 35.0%
! TTGCTCTAGATATCTACTCA+TGG - chr1_1:54539003-54539022 None:intergenic 35.0%
CAAAATGCCAACAGAATAGA+TGG + chr1_1:54539379-54539398 Msa0029240:CDS 35.0%
GATATATAGTTCTCCTTGCA+AGG + chr1_1:54539714-54539733 Msa0029240:intron 35.0%
GATCATTATTTGCAGGATGT+TGG + chr1_1:54539785-54539804 Msa0029240:intron 35.0%
!!! TCTGCTTACTTTTTTCTCGT+TGG + chr1_1:54540005-54540024 Msa0029240:intron 35.0%
!! TTTTGTTTCATCGAAGCTTG+AGG + chr1_1:54540053-54540072 Msa0029240:CDS 35.0%
AGTAAAGGCAATCAAGTCTA+TGG - chr1_1:54540131-54540150 None:intergenic 35.0%
CTTGGACTGTTAAGAAGTAA+AGG - chr1_1:54540200-54540219 None:intergenic 35.0%
! ATACCTTTGATTTCGAGTCT+TGG - chr1_1:54540218-54540237 None:intergenic 35.0%
! TGGATGCAATAACCCAATTT+TGG - chr1_1:54540241-54540260 None:intergenic 35.0%
! CAACAAAAGTGTGCATTAAG+GGG - chr1_1:54540271-54540290 None:intergenic 35.0%
! CACAACAAAAGTGTGCATTA+AGG - chr1_1:54540273-54540292 None:intergenic 35.0%
! CTTAATGCACACTTTTGTTG+TGG + chr1_1:54540271-54540290 Msa0029240:intron 35.0%
TGTGGTGTATCTGATATGTT+CGG + chr1_1:54540289-54540308 Msa0029240:intron 35.0%
TTTCCTCACTGAGATAATAC+TGG + chr1_1:54540422-54540441 Msa0029240:CDS 35.0%
!! GATAATACTGGCTCTTAAAG+AGG + chr1_1:54540434-54540453 Msa0029240:CDS 35.0%
AAATAAATGCTACATGGGAG+AGG - chr1_1:54540505-54540524 None:intergenic 35.0%
CCTAAAAAATGTGTGGATAC+TGG - chr1_1:54540608-54540627 None:intergenic 35.0%
!!! CCAGTATCCACACATTTTTT+AGG + chr1_1:54540605-54540624 Msa0029240:intron 35.0%
!!! CCACACATTTTTTAGGTTTG+GGG + chr1_1:54540612-54540631 Msa0029240:intron 35.0%
!!! CACACATTTTTTAGGTTTGG+GGG + chr1_1:54540613-54540632 Msa0029240:intron 35.0%
AGGTTCATAATGTGTGAACA+TGG - chr1_1:54540762-54540781 None:intergenic 35.0%
ACTGGTAACATCCAAAATGA+TGG + chr1_1:54540838-54540857 Msa0029240:intron 35.0%
! CTCCTTGAATACCATCATTT+TGG - chr1_1:54540852-54540871 None:intergenic 35.0%
TGTGGGTATAATGTTCAGAA+AGG + chr1_1:54541170-54541189 Msa0029240:intron 35.0%
ACTTCAAAATTCAGTACCTC+TGG - chr1_1:54541256-54541275 None:intergenic 35.0%
TACAGGCTAATAAGAAAACC+AGG + chr1_1:54541282-54541301 Msa0029240:intron 35.0%
CTAATAAGAAAACCAGGAAC+AGG + chr1_1:54541288-54541307 Msa0029240:CDS 35.0%
! TATGTGGAGTTTTTCCAACA+AGG - chr1_1:54541524-54541543 None:intergenic 35.0%
! AGCTCAAGGAAATGTTACTT+CGG - chr1_1:54541717-54541736 None:intergenic 35.0%
GGCCAATCTTGGTTTATTAA+AGG + chr1_1:54541766-54541785 Msa0029240:intron 35.0%
TTGTAAAACAGATCAAGGAG+CGG + chr1_1:54542175-54542194 Msa0029240:intron 35.0%
TTTCTTCAGATTTAGCACCT+CGG - chr1_1:54542212-54542231 None:intergenic 35.0%
TTTCAAAAGCAACTACATCC+AGG + chr1_1:54542244-54542263 Msa0029240:CDS 35.0%
ACAAGCATGTCATGTTAACA+TGG - chr1_1:54542541-54542560 None:intergenic 35.0%
! GACAATGTGATGTCTTTTTC+AGG + chr1_1:54542735-54542754 Msa0029240:intron 35.0%
GATATTGCATAAATTGGCAG+TGG + chr1_1:54543021-54543040 Msa0029240:intron 35.0%
AGGACACTTTATGCTATTGT+AGG - chr1_1:54543090-54543109 None:intergenic 35.0%
! TGTTGTTACTTGTTCCATCT+AGG + chr1_1:54543132-54543151 Msa0029240:intron 35.0%
CCTAGCATCATATTCTGAAT+CGG - chr1_1:54543369-54543388 None:intergenic 35.0%
GAATATGCTAGCAAAAAAGC+TGG + chr1_1:54543482-54543501 Msa0029240:CDS 35.0%
AGCTTGAACCTTATGCATAT+TGG + chr1_1:54543528-54543547 Msa0029240:CDS 35.0%
!! CTCATCATTTTTCGATCAAG+TGG - chr1_1:54543554-54543573 None:intergenic 35.0%
ATCGAAAAATGATGAGTCGT+CGG + chr1_1:54543558-54543577 Msa0029240:CDS 35.0%
! AAAAAAAGGTATGGCTACTG+TGG + chr1_1:54543601-54543620 Msa0029240:CDS 35.0%
! GATAAAGGAAAGCAGGTTTT+TGG + chr1_1:54543778-54543797 Msa0029240:three_prime_UTR 35.0%
TGGAATTGAACAGTAAACCC+TGG - chr1_1:54534845-54534864 None:intergenic 40.0%
ATTCCATTTCCGATCATGGA+AGG + chr1_1:54534859-54534878 Msa0029240:exon 40.0%
ATTCCTTCCATGATCGGAAA+TGG - chr1_1:54534865-54534884 None:intergenic 40.0%
GATCATGGAAGGAATCGAAA+TGG + chr1_1:54534870-54534889 Msa0029240:exon 40.0%
TTAAAAGCGATTCGATGACG+TGG - chr1_1:54535116-54535135 None:intergenic 40.0%
!! ACACTCTCCGAATTTTTCGA+CGG - chr1_1:54535237-54535256 None:intergenic 40.0%
!! TCTTACTGATTCACGATCCA+AGG + chr1_1:54535356-54535375 Msa0029240:CDS 40.0%
GTTCATGCAATAGTTGGGAT+TGG + chr1_1:54535741-54535760 Msa0029240:intron 40.0%
!! TTTTGGACTTTTGGGGGTAA+GGG + chr1_1:54535833-54535852 Msa0029240:intron 40.0%
! TGCTGACTAGTTCTTACAAC+AGG + chr1_1:54535921-54535940 Msa0029240:intron 40.0%
GTAAGAAGGCAATCCCATTT+GGG + chr1_1:54535943-54535962 Msa0029240:CDS 40.0%
AGTTTATCAAGACATCACGG+AGG - chr1_1:54535969-54535988 None:intergenic 40.0%
! GAAAGGTTTTTACTGCTTGC+TGG + chr1_1:54536042-54536061 Msa0029240:CDS 40.0%
AAATGCTGGTGAAGGAACTA+AGG + chr1_1:54536077-54536096 Msa0029240:CDS 40.0%
AATGCTGGTGAAGGAACTAA+GGG + chr1_1:54536078-54536097 Msa0029240:CDS 40.0%
CAAAGGTAGGCATTCTTTCA+AGG - chr1_1:54536133-54536152 None:intergenic 40.0%
!! TGAGGTGTTGTGCACATTAT+CGG + chr1_1:54536299-54536318 Msa0029240:CDS 40.0%
TTTGGCATCTGAACATGAAG+AGG + chr1_1:54536558-54536577 Msa0029240:CDS 40.0%
GAGTTTGATTAAACAGGGAG+TGG + chr1_1:54536636-54536655 Msa0029240:CDS 40.0%
AACATCAAAAACTCTGTCCC+AGG - chr1_1:54536761-54536780 None:intergenic 40.0%
TGGGAATTTGAATGGTTTCC+TGG + chr1_1:54537643-54537662 Msa0029240:intron 40.0%
TGCCTATGATTGGACGTATT+AGG + chr1_1:54537969-54537988 Msa0029240:CDS 40.0%
GCCTATGATTGGACGTATTA+GGG + chr1_1:54537970-54537989 Msa0029240:CDS 40.0%
TCCCTAATACGTCCAATCAT+AGG - chr1_1:54537974-54537993 None:intergenic 40.0%
TATTAGGGAGAAGGCTCAAA+AGG + chr1_1:54537985-54538004 Msa0029240:CDS 40.0%
!! AAGCTTTTAGCTGTGTCTGA+AGG - chr1_1:54538178-54538197 None:intergenic 40.0%
AGACACAGCTAAAAGCTTCA+AGG + chr1_1:54538180-54538199 Msa0029240:CDS 40.0%
TATGGCCAAAGAACAAGTCT+TGG + chr1_1:54538339-54538358 Msa0029240:CDS 40.0%
CTTGGTTAATTACTCGCAAC+AGG + chr1_1:54538357-54538376 Msa0029240:CDS 40.0%
GGAATGCAATGCCATACATT+TGG - chr1_1:54538520-54538539 None:intergenic 40.0%
CATGCTCAATTGCAAGAACA+TGG - chr1_1:54538541-54538560 None:intergenic 40.0%
TTGCAATTGAGCATGCATGT+TGG + chr1_1:54538546-54538565 Msa0029240:intron 40.0%
! GTGAAACTGATGATGATACG+TGG - chr1_1:54538704-54538723 None:intergenic 40.0%
AAGCACAAAATGTTGGCAAC+TGG - chr1_1:54538821-54538840 None:intergenic 40.0%
! GTTGCCAACATTTTGTGCTT+TGG + chr1_1:54538821-54538840 Msa0029240:intron 40.0%
TACTAGAAGCAAAGTGAGCT+TGG - chr1_1:54538882-54538901 None:intergenic 40.0%
AAGGGGATGTAGAGATTATG+TGG + chr1_1:54538938-54538957 Msa0029240:intron 40.0%
AGGGGATGTAGAGATTATGT+GGG + chr1_1:54538939-54538958 Msa0029240:intron 40.0%
GTCTGAACCATCTATTCTGT+TGG - chr1_1:54539389-54539408 None:intergenic 40.0%
ATGACTCTCAATCAGTTCTC+AGG + chr1_1:54539437-54539456 Msa0029240:CDS 40.0%
AGTATTAAAGCCAGCATTGC+AGG + chr1_1:54539682-54539701 Msa0029240:CDS 40.0%
AAGTTCTCTCGATCATACTC+AGG + chr1_1:54539831-54539850 Msa0029240:CDS 40.0%
AGTTCTCTCGATCATACTCA+GGG + chr1_1:54539832-54539851 Msa0029240:CDS 40.0%
GGATTATTCTTGACAGAGCT+CGG + chr1_1:54540026-54540045 Msa0029240:intron 40.0%
AGTCCAAGACTCGAAATCAA+AGG + chr1_1:54540212-54540231 Msa0029240:CDS 40.0%
ATCTCAGTGAGGAAAACTTC+TGG - chr1_1:54540417-54540436 None:intergenic 40.0%
AGAGGTAATGCAGTTAGTTG+TGG + chr1_1:54540452-54540471 Msa0029240:intron 40.0%
!!! GTATTTCTTTTGGCTCTGCT+CGG + chr1_1:54540541-54540560 Msa0029240:intron 40.0%
CCCCAAACCTAAAAAATGTG+TGG - chr1_1:54540615-54540634 None:intergenic 40.0%
!!! ACATTTTTTAGGTTTGGGGG+TGG + chr1_1:54540616-54540635 Msa0029240:intron 40.0%
!!! CATTTTTTAGGTTTGGGGGT+GGG + chr1_1:54540617-54540636 Msa0029240:intron 40.0%
CTACAAGGAATGGACAGATT+AGG - chr1_1:54540682-54540701 None:intergenic 40.0%
CCACTACTTACTACAAGGAA+TGG - chr1_1:54540692-54540711 None:intergenic 40.0%
CCATTCCTTGTAGTAAGTAG+TGG + chr1_1:54540689-54540708 Msa0029240:intron 40.0%
TTGCACATACAATAGCACAC+TGG + chr1_1:54540719-54540738 Msa0029240:intron 40.0%
TGCACATACAATAGCACACT+GGG + chr1_1:54540720-54540739 Msa0029240:intron 40.0%
GCACACTGGGTAATTGAAAT+AGG + chr1_1:54540733-54540752 Msa0029240:intron 40.0%
ACATAACTGTTGCATGCTAC+TGG + chr1_1:54540820-54540839 Msa0029240:intron 40.0%
ATTCTGTAACGACCATCTAG+TGG + chr1_1:54540894-54540913 Msa0029240:intron 40.0%
TTCTGTAACGACCATCTAGT+GGG + chr1_1:54540895-54540914 Msa0029240:intron 40.0%
TTTACTCAGGGATATGTGCT+TGG - chr1_1:54540988-54541007 None:intergenic 40.0%
AGATGGCAAAAAGTGATGTC+TGG - chr1_1:54541214-54541233 None:intergenic 40.0%
TTAACTTCACAAGCTTCCAG+AGG + chr1_1:54541237-54541256 Msa0029240:intron 40.0%
GTTGGTATGGTTAAGGCAAA+GGG - chr1_1:54541456-54541475 None:intergenic 40.0%
TGTTGGTATGGTTAAGGCAA+AGG - chr1_1:54541457-54541476 None:intergenic 40.0%
!!! TTGTGCTGTTTTGTGAGCTT+AGG + chr1_1:54541488-54541507 Msa0029240:intron 40.0%
ACGGTTGCACTTATCATATG+TGG - chr1_1:54541540-54541559 None:intergenic 40.0%
ATGATAAGTGCAACCGTCAA+AGG + chr1_1:54541543-54541562 Msa0029240:CDS 40.0%
AGCAAGGTCAGAGAATTCAT+AGG - chr1_1:54541583-54541602 None:intergenic 40.0%
!! TAAACCAAGATTGGCCTACA+CGG - chr1_1:54541762-54541781 None:intergenic 40.0%
CAATCCTTCTGCTTGTGATT+TGG - chr1_1:54541801-54541820 None:intergenic 40.0%
TGGTTGAGTGTTTGTTTCAG+TGG + chr1_1:54541840-54541859 Msa0029240:CDS 40.0%
GTTTCATATGTTCATCAGGC+AGG - chr1_1:54542072-54542091 None:intergenic 40.0%
TCAACTAACCTTGCGTATGT+TGG - chr1_1:54542101-54542120 None:intergenic 40.0%
GTGCTAAATCTGAAGAAACC+AGG + chr1_1:54542214-54542233 Msa0029240:CDS 40.0%
!!! TGCTTTTGAAACATGAGACC+TGG - chr1_1:54542235-54542254 None:intergenic 40.0%
AGTGATGCAGAATACCTGAA+CGG + chr1_1:54542815-54542834 Msa0029240:CDS 40.0%
!! AGCCACTTGATTTGCTTGAT+CGG + chr1_1:54543213-54543232 Msa0029240:CDS 40.0%
AGAATCTCAAAAGGAAGTCC+AGG + chr1_1:54543264-54543283 Msa0029240:CDS 40.0%
CTGAAGGACGTTTGATTATC+CGG + chr1_1:54543315-54543334 Msa0029240:CDS 40.0%
TGAAGGACGTTTGATTATCC+GGG + chr1_1:54543316-54543335 Msa0029240:CDS 40.0%
TTTGATTATCCGGGAGGAAA+GGG + chr1_1:54543325-54543344 Msa0029240:CDS 40.0%
CCGATTCAGAATATGATGCT+AGG + chr1_1:54543366-54543385 Msa0029240:CDS 40.0%
CTTGCAGACAAATGACTATC+AGG - chr1_1:54543398-54543417 None:intergenic 40.0%
CTGATAGTCATTTGTCTGCA+AGG + chr1_1:54543396-54543415 Msa0029240:CDS 40.0%
TATGCTAGCAAAAAAGCTGG+TGG + chr1_1:54543485-54543504 Msa0029240:CDS 40.0%
AAGCTGGTGGAGATATTAAG+AGG + chr1_1:54543498-54543517 Msa0029240:CDS 40.0%
TGGTGGAGATATTAAGAGGA+AGG + chr1_1:54543502-54543521 Msa0029240:CDS 40.0%
TCAAGTGGCCAATATGCATA+AGG - chr1_1:54543539-54543558 None:intergenic 40.0%
AATAACGCAGTCTTGAAGCT+GGG - chr1_1:54543862-54543881 None:intergenic 40.0%
AATATGCGACTGGGGAAGAA+GGG - chr1_1:54535038-54535057 None:intergenic 45.0%
AAATATGCGACTGGGGAAGA+AGG - chr1_1:54535039-54535058 None:intergenic 45.0%
TCTTCCCCAGTCGCATATTT+CGG + chr1_1:54535039-54535058 Msa0029240:CDS 45.0%
! TGTTATCGTTAAAGTGCCCG+TGG + chr1_1:54535149-54535168 Msa0029240:CDS 45.0%
TTCTCCGCCGTCGAAAAATT+CGG + chr1_1:54535227-54535246 Msa0029240:CDS 45.0%
GTTGTACATTGCCTTTGGGT+TGG + chr1_1:54535552-54535571 Msa0029240:intron 45.0%
TGTGAGCAAAATGACGGTAG+TGG - chr1_1:54535604-54535623 None:intergenic 45.0%
!! GTTTTGGACTTTTGGGGGTA+AGG + chr1_1:54535832-54535851 Msa0029240:intron 45.0%
!! TTTGGACTTTTGGGGGTAAG+GGG + chr1_1:54535834-54535853 Msa0029240:intron 45.0%
GGTAAGAAGGCAATCCCATT+TGG + chr1_1:54535942-54535961 Msa0029240:intron 45.0%
CTATTAGCATCTGCGAGTGA+AGG + chr1_1:54536003-54536022 Msa0029240:CDS 45.0%
!! AGGTTTTTACTGCTTGCTGG+TGG + chr1_1:54536045-54536064 Msa0029240:CDS 45.0%
GCAAATGCAAATGCTGGTGA+AGG + chr1_1:54536069-54536088 Msa0029240:CDS 45.0%
ATTATGCGCCTAGTGACTAG+GGG - chr1_1:54536219-54536238 None:intergenic 45.0%
CATTATGCGCCTAGTGACTA+GGG - chr1_1:54536220-54536239 None:intergenic 45.0%
!! TTCCTCTGAAGCACTACTTG+AGG + chr1_1:54536281-54536300 Msa0029240:CDS 45.0%
!! CATGCTTTTGAGTGCATCTG+TGG - chr1_1:54536596-54536615 None:intergenic 45.0%
CTGGATGAATCAAGGAGATC+AGG + chr1_1:54536670-54536689 Msa0029240:CDS 45.0%
ATTATCACTATGCTGCTGCC+TGG + chr1_1:54536740-54536759 Msa0029240:CDS 45.0%
TTATCACTATGCTGCTGCCT+GGG + chr1_1:54536741-54536760 Msa0029240:CDS 45.0%
ATTGGGACACATGGTTGTTC+TGG - chr1_1:54537305-54537324 None:intergenic 45.0%
TTCAGGTCCCATTGCAACAA+GGG - chr1_1:54537822-54537841 None:intergenic 45.0%
! TTTCAGGTCCCATTGCAACA+AGG - chr1_1:54537823-54537842 None:intergenic 45.0%
GATTGGACGTATTAGGGAGA+AGG + chr1_1:54537976-54537995 Msa0029240:CDS 45.0%
! GGAGAAGGCTCAAAAGGTAT+TGG + chr1_1:54537991-54538010 Msa0029240:intron 45.0%
! CAGCGTTTTTCTTCTCTCCA+TGG + chr1_1:54538032-54538051 Msa0029240:intron 45.0%
TACTTTGCAGCTTGAGAAGC+AGG + chr1_1:54538075-54538094 Msa0029240:intron 45.0%
ACTTTGCAGCTTGAGAAGCA+GGG + chr1_1:54538076-54538095 Msa0029240:intron 45.0%
ACGCACTTGCTTACTCTTTG+TGG + chr1_1:54538125-54538144 Msa0029240:CDS 45.0%
!! AGATGATGGTGGTTGTTTGC+AGG + chr1_1:54538465-54538484 Msa0029240:CDS 45.0%
ATAGCACATACGAGCACAAC+AGG - chr1_1:54538627-54538646 None:intergenic 45.0%
AAAAGCTGAAACATGGGCAC+TGG - chr1_1:54538666-54538685 None:intergenic 45.0%
TGCAGCAATCTTTCAACGTG+AGG - chr1_1:54539181-54539200 None:intergenic 45.0%
TTCGCAGTTTCATTGTTGCC+TGG + chr1_1:54539626-54539645 Msa0029240:CDS 45.0%
!! TGTTGGTGTCATGCAGAAGA+AGG + chr1_1:54539802-54539821 Msa0029240:CDS 45.0%
! TTCAATCACGGGTGTTGTCA+TGG + chr1_1:54539912-54539931 Msa0029240:intron 45.0%
TATGGCGTTTGGCAGAAGAA+TGG - chr1_1:54540113-54540132 None:intergenic 45.0%
GCAATCAAGTCTATGGCGTT+TGG - chr1_1:54540124-54540143 None:intergenic 45.0%
GAACTCAACTTTGACTGCCT+CGG - chr1_1:54540178-54540197 None:intergenic 45.0%
GTGCATTAAGGGGACAAACA+TGG - chr1_1:54540261-54540280 None:intergenic 45.0%
TGAACTTATGTACTGCCGAC+AGG + chr1_1:54540374-54540393 Msa0029240:intron 45.0%
AGGCCATTGAATCATCCTGT+CGG - chr1_1:54540392-54540411 None:intergenic 45.0%
GAGCCAGTATTATCTCAGTG+AGG - chr1_1:54540428-54540447 None:intergenic 45.0%
AGATTAGGAAGTTCCCGGTT+AGG - chr1_1:54540667-54540686 None:intergenic 45.0%
TGGACAGATTAGGAAGTTCC+CGG - chr1_1:54540672-54540691 None:intergenic 45.0%
GCTCACCACTACTTACTACA+AGG - chr1_1:54540697-54540716 None:intergenic 45.0%
CACATGGCAGCAACAAAAAC+AGG - chr1_1:54540782-54540801 None:intergenic 45.0%
TGTAGAGAACACCCACTAGA+TGG - chr1_1:54540909-54540928 None:intergenic 45.0%
! TTGGAACCTCAGAAGAGTAC+AGG - chr1_1:54540943-54540962 None:intergenic 45.0%
TGCCAGAGCAAACACAACAA+TGG - chr1_1:54541103-54541122 None:intergenic 45.0%
AATGTCATAAGCCCTGTTCC+TGG - chr1_1:54541303-54541322 None:intergenic 45.0%
GAACAGGGCTTATGACATTC+TGG + chr1_1:54541304-54541323 Msa0029240:CDS 45.0%
CAAGCGAGCTAAACCTTTGA+CGG - chr1_1:54541559-54541578 None:intergenic 45.0%
TCGAGCAGGACAAATGTAGA+TGG - chr1_1:54541627-54541646 None:intergenic 45.0%
GTAGCCAAATCACAAGCAGA+AGG + chr1_1:54541794-54541813 Msa0029240:CDS 45.0%
!! GTTGAGGATGGCTGTTGTTT+TGG + chr1_1:54541934-54541953 Msa0029240:intron 45.0%
GCTTATCACGAAGTGTGGAT+TGG + chr1_1:54542030-54542049 Msa0029240:CDS 45.0%
!! TATCACGAAGTGTGGATTGG+AGG + chr1_1:54542033-54542052 Msa0029240:CDS 45.0%
ACTTCTGACCAACATACGCA+AGG + chr1_1:54542090-54542109 Msa0029240:CDS 45.0%
GAAAGGCCACTACATGTAAG+TGG - chr1_1:54542354-54542373 None:intergenic 45.0%
GCTGTATCTTGAGCTGCATT+TGG + chr1_1:54542713-54542732 Msa0029240:intron 45.0%
GAGTTTGATGGAGACAGCAA+AGG + chr1_1:54542791-54542810 Msa0029240:CDS 45.0%
TAGATATTGCCTTGCCGTTC+AGG - chr1_1:54542832-54542851 None:intergenic 45.0%
AACGGCAAGGCAATATCTAG+AGG + chr1_1:54542833-54542852 Msa0029240:CDS 45.0%
ACGGCAAGGCAATATCTAGA+GGG + chr1_1:54542834-54542853 Msa0029240:CDS 45.0%
!! TGCTGCTGATTTGAGATGTG+TGG - chr1_1:54542870-54542889 None:intergenic 45.0%
AATCAGCAGCATCGTCATTC+AGG + chr1_1:54542879-54542898 Msa0029240:CDS 45.0%
GGTTACGGATAACTCATCAC+AGG - chr1_1:54543069-54543088 None:intergenic 45.0%
AGTCTCATCTTGGACCTAGA+TGG - chr1_1:54543149-54543168 None:intergenic 45.0%
TGCCGATCAAGCAAATCAAG+TGG - chr1_1:54543218-54543237 None:intergenic 45.0%
TGCTTGATCGGCAGAAAGTA+AGG + chr1_1:54543225-54543244 Msa0029240:CDS 45.0%
GAGATGGAGGTAGATTCTGA+AGG + chr1_1:54543299-54543318 Msa0029240:CDS 45.0%
GTTTGATTATCCGGGAGGAA+AGG + chr1_1:54543324-54543343 Msa0029240:CDS 45.0%
GCATCATATTCTGAATCGGC+TGG - chr1_1:54543365-54543384 None:intergenic 45.0%
AGTCATTTGTCTGCAAGGTC+CGG + chr1_1:54543401-54543420 Msa0029240:CDS 45.0%
!! TGCTGTTCTTCTCCGCTTTT+GGG - chr1_1:54543435-54543454 None:intergenic 45.0%
CATAGGGCTGCTGCAAAAAA+AGG + chr1_1:54543587-54543606 Msa0029240:CDS 45.0%
GGCTGCTGCAAAAAAAGGTA+TGG + chr1_1:54543592-54543611 Msa0029240:CDS 45.0%
GTAGCAGATTGATAGAGCCA+TGG + chr1_1:54543730-54543749 Msa0029240:three_prime_UTR 45.0%
CAATAACGCAGTCTTGAAGC+TGG - chr1_1:54543863-54543882 None:intergenic 45.0%
!!! TTTTAAAATTTTAAATGTTT+TGG + chr1_1:54535816-54535835 Msa0029240:intron 5.0%
!!! TTTTCTTTATTTTAATATTT+TGG + chr1_1:54539881-54539900 Msa0029240:intron 5.0%
!! GCAGAGGTGTTGGTGGTTAA+CGG - chr1_1:54534971-54534990 None:intergenic 50.0%
TTGCGCCGAAATATGCGACT+GGG - chr1_1:54535047-54535066 None:intergenic 50.0%
GATTAGGTTCCGGTACGATG+CGG - chr1_1:54535086-54535105 None:intergenic 50.0%
!! TGGTCAGGTGGATTAGGTTC+CGG - chr1_1:54535096-54535115 None:intergenic 50.0%
! ATGACGTGGTCAGGTGGATT+AGG - chr1_1:54535102-54535121 None:intergenic 50.0%
TCCTTCTTCAACACAGCCAC+GGG - chr1_1:54535168-54535187 None:intergenic 50.0%
CTCCTTCTTCAACACAGCCA+CGG - chr1_1:54535169-54535188 None:intergenic 50.0%
!! CTCTCCGAATTTTTCGACGG+CGG - chr1_1:54535234-54535253 None:intergenic 50.0%
!! TCGGAGAGTGTCGTTGTTGA+TGG + chr1_1:54535246-54535265 Msa0029240:CDS 50.0%
GCAGGATCAAACCAACCCAA+AGG - chr1_1:54535566-54535585 None:intergenic 50.0%
TGGAAGATTGAACACTGCGC+AGG - chr1_1:54535584-54535603 None:intergenic 50.0%
GGTGGAGCAAATGCAAATGC+TGG + chr1_1:54536063-54536082 Msa0029240:CDS 50.0%
CCATTATGCGCCTAGTGACT+AGG - chr1_1:54536221-54536240 None:intergenic 50.0%
CCTAGTCACTAGGCGCATAA+TGG + chr1_1:54536218-54536237 Msa0029240:CDS 50.0%
CACCTCAAGTAGTGCTTCAG+AGG - chr1_1:54536286-54536305 None:intergenic 50.0%
TGCATCTGTGGCTGCGAATA+TGG - chr1_1:54536584-54536603 None:intergenic 50.0%
GGGAGTGGATCAGATAACTC+TGG + chr1_1:54536651-54536670 Msa0029240:CDS 50.0%
TTGCAACAAGGGCTGATCCA+AGG - chr1_1:54537811-54537830 None:intergenic 50.0%
TGGATCAGCCCTTGTTGCAA+TGG + chr1_1:54537811-54537830 Msa0029240:CDS 50.0%
GGATCAGCCCTTGTTGCAAT+GGG + chr1_1:54537812-54537831 Msa0029240:CDS 50.0%
AGGGACTGACAGTGTCATCA+AGG + chr1_1:54538095-54538114 Msa0029240:CDS 50.0%
! TTTCTTTTCATCCCAGGGCG+CGG + chr1_1:54539594-54539613 Msa0029240:intron 50.0%
AGCCAGCATTGCAGGTTTGT+CGG + chr1_1:54539690-54539709 Msa0029240:intron 50.0%
TCGAAGCTTGAGGTTCTGCT+TGG + chr1_1:54540063-54540082 Msa0029240:CDS 50.0%
CGAAGCTTGAGGTTCTGCTT+GGG + chr1_1:54540064-54540083 Msa0029240:CDS 50.0%
TGAGGTTCTGCTTGGGCTTA+TGG + chr1_1:54540071-54540090 Msa0029240:CDS 50.0%
CGTTTGGCAGAAGAATGGCA+AGG - chr1_1:54540108-54540127 None:intergenic 50.0%
ACTCCATGTCATGAAGTCCG+AGG + chr1_1:54540158-54540177 Msa0029240:CDS 50.0%
CTGCCGACAGGATGATTCAA+TGG + chr1_1:54540386-54540405 Msa0029240:intron 50.0%
GACAGGATGATTCAATGGCC+TGG + chr1_1:54540391-54540410 Msa0029240:intron 50.0%
AGTGAGGAAAACTTCTGGCC+AGG - chr1_1:54540412-54540431 None:intergenic 50.0%
!!! TGGCTCTGCTCGGTTTTTTC+TGG + chr1_1:54540551-54540570 Msa0029240:intron 50.0%
TGCTGACCTGTACTCTTCTG+AGG + chr1_1:54540934-54540953 Msa0029240:intron 50.0%
GGCCATTGTTGTGTTTGCTC+TGG + chr1_1:54541098-54541117 Msa0029240:intron 50.0%
CTCCTCGTCTCCAAATGCAT+GGG - chr1_1:54541339-54541358 None:intergenic 50.0%
TCTCCTCGTCTCCAAATGCA+TGG - chr1_1:54541340-54541359 None:intergenic 50.0%
GCATTTGGAGACGAGGAGAA+AGG + chr1_1:54541341-54541360 Msa0029240:CDS 50.0%
TTTGGAGACGAGGAGAAAGG+TGG + chr1_1:54541344-54541363 Msa0029240:CDS 50.0%
TTGGAGACGAGGAGAAAGGT+GGG + chr1_1:54541345-54541364 Msa0029240:CDS 50.0%
! TTGTGAGCTTAGGTTGCTCG+CGG + chr1_1:54541498-54541517 Msa0029240:intron 50.0%
! CGTCAAAGGTTTAGCTCGCT+TGG + chr1_1:54541557-54541576 Msa0029240:CDS 50.0%
TTCTCCGTGTAGGCCAATCT+TGG + chr1_1:54541755-54541774 Msa0029240:intron 50.0%
GCAAATGCATCTGAAGAGCG+TGG + chr1_1:54541820-54541839 Msa0029240:CDS 50.0%
GGGATGCTTATCACGAAGTG+TGG + chr1_1:54542025-54542044 Msa0029240:CDS 50.0%
AGATCAAGGAGCGGAAAGAG+AGG + chr1_1:54542184-54542203 Msa0029240:intron 50.0%
TGCAGAATACCTGAACGGCA+AGG + chr1_1:54542820-54542839 Msa0029240:CDS 50.0%
CGGCAAGGCAATATCTAGAG+GGG + chr1_1:54542835-54542854 Msa0029240:CDS 50.0%
GGCAAGGCAATATCTAGAGG+GGG + chr1_1:54542836-54542855 Msa0029240:CDS 50.0%
CGGATAACTCATCACAGGAC+CGG - chr1_1:54543064-54543083 None:intergenic 50.0%
GATTCGTCAGACAAGTGCTC+AGG - chr1_1:54543185-54543204 None:intergenic 50.0%
CATCTCATCATCGTCTGACC+TGG - chr1_1:54543285-54543304 None:intergenic 50.0%
CAGGTCAGACGATGATGAGA+TGG + chr1_1:54543283-54543302 Msa0029240:CDS 50.0%
GTCAGACGATGATGAGATGG+AGG + chr1_1:54543286-54543305 Msa0029240:CDS 50.0%
AGGACGTTTGATTATCCGGG+AGG + chr1_1:54543319-54543338 Msa0029240:CDS 50.0%
!! CCGCTTTTGGGCTTTAGTTC+CGG - chr1_1:54543423-54543442 None:intergenic 50.0%
CCGGAACTAAAGCCCAAAAG+CGG + chr1_1:54543420-54543439 Msa0029240:CDS 50.0%
! CTGCTGTTCTTCTCCGCTTT+TGG - chr1_1:54543436-54543455 None:intergenic 50.0%
AAGAACAGCAGAGCCTGGTA+GGG + chr1_1:54543445-54543464 Msa0029240:CDS 50.0%
TTTCCAGTGTAAGCCCTACC+AGG - chr1_1:54543461-54543480 None:intergenic 50.0%
TGGTAGGGCTTACACTGGAA+AGG + chr1_1:54543460-54543479 Msa0029240:CDS 50.0%
TTTGCAGCAGCCCTATGTTG+TGG - chr1_1:54543584-54543603 None:intergenic 50.0%
! CTTCATAGAAAGCACGCCAG+AGG - chr1_1:54543660-54543679 None:intergenic 50.0%
TCTATAAACCCTTGCCGCCG+TGG + chr1_1:54534802-54534821 Msa0029240:five_prime_UTR 55.0%
CTATAAACCCTTGCCGCCGT+GGG + chr1_1:54534803-54534822 Msa0029240:five_prime_UTR 55.0%
!! CTAGCTAGCTCTAGCACCCA+CGG - chr1_1:54534822-54534841 None:intergenic 55.0%
GTGCTAGAGCTAGCTAGCCA+GGG + chr1_1:54534825-54534844 Msa0029240:five_prime_UTR 55.0%
!! GAGGTGTTGGTGGTTAACGG+CGG - chr1_1:54534968-54534987 None:intergenic 55.0%
CAACACCTCTGCACCGTCAT+CGG + chr1_1:54534979-54534998 Msa0029240:CDS 55.0%
! CTGTGACATTGCGCCGATGA+CGG - chr1_1:54534995-54535014 None:intergenic 55.0%
TGCGCCGAAATATGCGACTG+GGG - chr1_1:54535046-54535065 None:intergenic 55.0%
GTTGCGCCGAAATATGCGAC+TGG - chr1_1:54535048-54535067 None:intergenic 55.0%
CTCCTTGAACCGCATCGTAC+CGG + chr1_1:54535074-54535093 Msa0029240:CDS 55.0%
TTCCGGTACGATGCGGTTCA+AGG - chr1_1:54535079-54535098 None:intergenic 55.0%
GATTCGATGACGTGGTCAGG+TGG - chr1_1:54535108-54535127 None:intergenic 55.0%
AGCGATTCGATGACGTGGTC+AGG - chr1_1:54535111-54535130 None:intergenic 55.0%
GACATCACGGAGGCCCAAAT+GGG - chr1_1:54535959-54535978 None:intergenic 55.0%
AGACATCACGGAGGCCCAAA+TGG - chr1_1:54535960-54535979 None:intergenic 55.0%
AGGAACTAAGGGAGCCCAAC+AGG + chr1_1:54536089-54536108 Msa0029240:CDS 55.0%
TGCGTCAACCCCTAGTCACT+AGG + chr1_1:54536208-54536227 Msa0029240:CDS 55.0%
ACTGCTCGCTTGCTTGATGC+TGG + chr1_1:54536369-54536388 Msa0029240:CDS 55.0%
GTGCAGCTTCATACGTGCCT+TGG + chr1_1:54537791-54537810 Msa0029240:intron 55.0%
AAATCAAGAAGCCGCGCCCT+GGG - chr1_1:54539608-54539627 None:intergenic 55.0%
CTCCGACAAACCTGCAATGC+TGG - chr1_1:54539695-54539714 None:intergenic 55.0%
CTGCCTCGGACTTCATGACA+TGG - chr1_1:54540164-54540183 None:intergenic 55.0%
CGAGCCTTCATGAGCCTAAC+CGG + chr1_1:54540650-54540669 Msa0029240:intron 55.0%
GAGCCTTCATGAGCCTAACC+GGG + chr1_1:54540651-54540670 Msa0029240:intron 55.0%
GTTCCCGGTTAGGCTCATGA+AGG - chr1_1:54540657-54540676 None:intergenic 55.0%
GTCGAAGTCGCCCATGCATT+TGG + chr1_1:54541326-54541345 Msa0029240:CDS 55.0%
TATCCGGGAGGAAAGGGAGA+CGG + chr1_1:54543331-54543350 Msa0029240:CDS 55.0%
GAAGAACAGCAGAGCCTGGT+AGG + chr1_1:54543444-54543463 Msa0029240:CDS 55.0%
TGAGTCGTCGGCCACAACAT+AGG + chr1_1:54543570-54543589 Msa0029240:CDS 55.0%
GAGTCGTCGGCCACAACATA+GGG + chr1_1:54543571-54543590 Msa0029240:CDS 55.0%
!! CTTGAAGGCAAGAGTGCCTC+TGG + chr1_1:54543641-54543660 Msa0029240:CDS 55.0%
GGTGCTAGAGCTAGCTAGCC+AGG + chr1_1:54534824-54534843 Msa0029240:five_prime_UTR 60.0%
!! GTGTTGGTGGTTAACGGCGG+TGG - chr1_1:54534965-54534984 None:intergenic 60.0%
!! TGACGGTGCAGAGGTGTTGG+TGG - chr1_1:54534978-54534997 None:intergenic 60.0%
! CGATGACGGTGCAGAGGTGT+TGG - chr1_1:54534981-54535000 None:intergenic 60.0%
CGTCATCGGCGCAATGTCAC+AGG + chr1_1:54534993-54535012 Msa0029240:CDS 60.0%
CTGGGGAAGAAGGGAGGTTG+TGG - chr1_1:54535029-54535048 None:intergenic 60.0%
ATGCGACTGGGGAAGAAGGG+AGG - chr1_1:54535035-54535054 None:intergenic 60.0%
CGGTACGATGCGGTTCAAGG+AGG - chr1_1:54535076-54535095 None:intergenic 60.0%
GCCCGTGGCTGTGTTGAAGA+AGG + chr1_1:54535164-54535183 Msa0029240:CDS 60.0%
GGGGGTAAGGGGATGTAGCA+TGG + chr1_1:54535845-54535864 Msa0029240:intron 60.0%
GAAATCAAGAAGCCGCGCCC+TGG - chr1_1:54539609-54539628 None:intergenic 60.0%
! TAGGTTTGGGGGTGGGCTCT+AGG + chr1_1:54540624-54540643 Msa0029240:intron 60.0%
CGCCCATGCATTTGGAGACG+AGG + chr1_1:54541334-54541353 Msa0029240:CDS 60.0%
! TAGGTTGCTCGCGGCCTTGT+TGG + chr1_1:54541507-54541526 Msa0029240:intron 60.0%
GAGCGGAAAGAGAGGAACCG+AGG + chr1_1:54542192-54542211 Msa0029240:CDS 60.0%
CGGAGAAGAACAGCAGAGCC+TGG + chr1_1:54543440-54543459 Msa0029240:CDS 60.0%
GAGCCTGGTAGGGCTTACAC+TGG + chr1_1:54543455-54543474 Msa0029240:CDS 60.0%
TCTAGCACCCACGGCGGCAA+GGG - chr1_1:54534813-54534832 None:intergenic 65.0%
!! GCTAGCTCTAGCACCCACGG+CGG - chr1_1:54534819-54534838 None:intergenic 65.0%
! TTGCGCCGATGACGGTGCAG+AGG - chr1_1:54534987-54535006 None:intergenic 65.0%
CCTCCGTCTCCCTTTCCTCC+CGG - chr1_1:54543337-54543356 None:intergenic 65.0%
CTCTAGCACCCACGGCGGCA+AGG - chr1_1:54534814-54534833 None:intergenic 70.0%
CCGGGAGGAAAGGGAGACGG+AGG + chr1_1:54543334-54543353 Msa0029240:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 54534770 54543938 54534770 ID=Msa0029240;Name=Msa0029240
chr1_1 mRNA 54534770 54543938 54534770 ID=Msa0029240-mRNA-1;Parent=Msa0029240;Name=Msa0029240-mRNA-1;_AED=0.07;_eAED=0.07;_QI=104|1|1|1|1|1|18|214|1284
chr1_1 exon 54534770 54535377 54534770 ID=Msa0029240-mRNA-1:exon:16210;Parent=Msa0029240-mRNA-1
chr1_1 exon 54535943 54536465 54535943 ID=Msa0029240-mRNA-1:exon:16211;Parent=Msa0029240-mRNA-1
chr1_1 exon 54536554 54536805 54536554 ID=Msa0029240-mRNA-1:exon:16212;Parent=Msa0029240-mRNA-1
chr1_1 exon 54537115 54537206 54537115 ID=Msa0029240-mRNA-1:exon:16213;Parent=Msa0029240-mRNA-1
chr1_1 exon 54537797 54538006 54537797 ID=Msa0029240-mRNA-1:exon:16214;Parent=Msa0029240-mRNA-1
chr1_1 exon 54538085 54538486 54538085 ID=Msa0029240-mRNA-1:exon:16215;Parent=Msa0029240-mRNA-1
chr1_1 exon 54539289 54539458 54539289 ID=Msa0029240-mRNA-1:exon:16216;Parent=Msa0029240-mRNA-1
chr1_1 exon 54539610 54539703 54539610 ID=Msa0029240-mRNA-1:exon:16217;Parent=Msa0029240-mRNA-1
chr1_1 exon 54539800 54539853 54539800 ID=Msa0029240-mRNA-1:exon:16218;Parent=Msa0029240-mRNA-1
chr1_1 exon 54540042 54540233 54540042 ID=Msa0029240-mRNA-1:exon:16219;Parent=Msa0029240-mRNA-1
chr1_1 exon 54540396 54540455 54540396 ID=Msa0029240-mRNA-1:exon:16220;Parent=Msa0029240-mRNA-1
chr1_1 exon 54541287 54541400 54541287 ID=Msa0029240-mRNA-1:exon:16221;Parent=Msa0029240-mRNA-1
chr1_1 exon 54541510 54541671 54541510 ID=Msa0029240-mRNA-1:exon:16222;Parent=Msa0029240-mRNA-1
chr1_1 exon 54541767 54541895 54541767 ID=Msa0029240-mRNA-1:exon:16223;Parent=Msa0029240-mRNA-1
chr1_1 exon 54542010 54542111 54542010 ID=Msa0029240-mRNA-1:exon:16224;Parent=Msa0029240-mRNA-1
chr1_1 exon 54542186 54542265 54542186 ID=Msa0029240-mRNA-1:exon:16225;Parent=Msa0029240-mRNA-1
chr1_1 exon 54542757 54542900 54542757 ID=Msa0029240-mRNA-1:exon:16226;Parent=Msa0029240-mRNA-1
chr1_1 exon 54543154 54543938 54543154 ID=Msa0029240-mRNA-1:exon:16227;Parent=Msa0029240-mRNA-1
chr1_1 five_prime_UTR 54534770 54534873 54534770 ID=Msa0029240-mRNA-1:five_prime_utr;Parent=Msa0029240-mRNA-1
chr1_1 CDS 54534874 54535377 54534874 ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1 CDS 54535943 54536465 54535943 ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1 CDS 54536554 54536805 54536554 ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1 CDS 54537115 54537206 54537115 ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1 CDS 54537797 54538006 54537797 ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1 CDS 54538085 54538486 54538085 ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1 CDS 54539289 54539458 54539289 ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1 CDS 54539610 54539703 54539610 ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1 CDS 54539800 54539853 54539800 ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1 CDS 54540042 54540233 54540042 ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1 CDS 54540396 54540455 54540396 ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1 CDS 54541287 54541400 54541287 ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1 CDS 54541510 54541671 54541510 ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1 CDS 54541767 54541895 54541767 ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1 CDS 54542010 54542111 54542010 ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1 CDS 54542186 54542265 54542186 ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1 CDS 54542757 54542900 54542757 ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1 CDS 54543154 54543724 54543154 ID=Msa0029240-mRNA-1:cds;Parent=Msa0029240-mRNA-1
chr1_1 three_prime_UTR 54543725 54543938 54543725 ID=Msa0029240-mRNA-1:three_prime_utr;Parent=Msa0029240-mRNA-1
Gene Sequence

>Msa0029240

ATGGAAGGAATCGAAATGGAGCAACCAACATTCAACAACGAATCCAACGATGATATATGCAATTCAATTCTCTCTCGTTTCTCAAAATCCACCGCCGTTAACCACCAACACCTCTGCACCGTCATCGGCGCAATGTCACAGGAACTCAAAGACCACAACCTCCCTTCTTCCCCAGTCGCATATTTCGGCGCAACGTGCTCCTCCTTGAACCGCATCGTACCGGAACCTAATCCACCTGACCACGTCATCGAATCGCTTTTAACCATTCTCTCGATTGTTATCGTTAAAGTGCCCGTGGCTGTGTTGAAGAAGGAGAGAGAGTCTTTGTCTGAGCTTATTGTGAAAGTTATTCATTCTCCGCCGTCGAAAAATTCGGAGAGTGTCGTTGTTGATGGATTGAAGTGTGTTTCGCATTTGTTGATTCATAGAGATAGTGTTCATTGGTCTGATGTGTCCACGTTGTTCAATCTTTTGTTAGGATTTCTTACTGATTCACGATCCAAGGTAAGAAGGCAATCCCATTTGGGCCTCCGTGATGTCTTGATAAACTTTCAAAAGTCTTCACTATTAGCATCTGCGAGTGAAGGTGTCAAAAACCTACTTGAAAGGTTTTTACTGCTTGCTGGTGGAGCAAATGCAAATGCTGGTGAAGGAACTAAGGGAGCCCAACAGGTTTTGTATGTTCTTGATGCCTTGAAAGAATGCCTACCTTTGTTGTCACTAAAAGACAAGAACAGCATTCTCAAGCACTTCAAAACTCTATTGAATCTGCGTCAACCCCTAGTCACTAGGCGCATAATGGATGCTTTGAATTTTATCTGTCTTAACTCAACATCAGAAGTTTCCTCTGAAGCACTACTTGAGGTGTTGTGCACATTATCGGCTCTTTCTACCTCATCAAATGAGATTTCTGGAGATGGTATGACATTTACTGCTCGCTTGCTTGATGCTGGAATGAAGAAAGTTTTTTCTCTGAACAGGCAAATGTGTGTAATTAAGCTTCCCAGTGTTTTCAGTGATCTCAAAGATATTTTGGCATCTGAACATGAAGAGGCCATATTCGCAGCCACAGATGCACTCAAAAGCATGATCAATTATTGCATTGATGAGAGTTTGATTAAACAGGGAGTGGATCAGATAACTCTGGATGAATCAAGGAGATCAGGACCAACCATTATTGAGAAAATTTGTGCAACTGTTGAGAGCTTACTTGATTATCACTATGCTGCTGCCTGGGACAGAGTTTTTGATGTTGTTTCCGCAATGTTTCACAAATTAGGAAGTAACTCTCCTTACTTTATGAGAGGTATACTCAAAAACTTGGAAGATATGCAGAAGCTGCCTGATGAAGATTTTCCCTTTAGGAAACAGCTTCATACGTGCCTTGGATCAGCCCTTGTTGCAATGGGACCTGAAACTTTCTTATCCTTTATACCATTGAATTTGGAAGCTGAAGATTTATCTGTGTCAAATATATGGCTTTTTCCCATTTTAAAACAGTATATTGTTGGTGCACATCTAAAATATTTTACCGACGAAATTTTGCCTATGATTGGACGTATTAGGGAGAAGGCTCAAAAGCTTGAGAAGCAGGGACTGACAGTGTCATCAAGGAATGCAGACGCACTTGCTTACTCTTTGTGGTCTTTACTGCCTTCATTTTGTAACTATCCTTCAGACACAGCTAAAAGCTTCAAGGATCTAGAGAGACATTTACGTAGTACACTAAAAGAAGAACCTGATATTCGTGGAATAATATGCACTAGCTTGCAGCTTCTGATTAGACAAAACAAGAACATAAAGGACTCAAATGATAAAGATGATATTGGGCAAGATATGGCCAAAGAACAAGTCTTGGTTAATTACTCGCAACAGGTTGCAACAGAAAATTTGAGGGCATTGGAGATATCTGCCAAGAACTTGTTGAAAGATCTGTCAGACGTGTTCCTGAAATCTACAAAAGATGATGGTGGTTGTTTGCAGGGCACAATTAGTGACATTGCTTCTATAGCAGAAAAGAAAGTCGTACAAAACTTATTTAAGAAGAAGATGTCAGACCTCTTAAAATGTACTCAAAATGCCAACAGAATAGATGGTTCAGACAGCTCTATGCAGATTGATGCATCAAATGATGACTCTCAATCAGTTCTCAGGGCGCGGCTTCTTGATTTCGCAGTTTCATTGTTGCCTGGATTAGATACAAAAGATATTGATTTATTATTTCAAGTATTAAAGCCAGCATTGCAGGATGTTGGTGTCATGCAGAAGAAGGCATACAAAGTTCTCTCGATCATACTCAGGAGCTCGGATAGTTTTGTTTCATCGAAGCTTGAGGTTCTGCTTGGGCTTATGGTTGAAATTCTTCCTTGCCATTCTTCTGCCAAACGCCATAGACTTGATTGCCTTTACTTTTTGATACTCCATGTCATGAAGTCCGAGGCAGTCAAAGTTGAGTTCCTTTACTTCTTAACAGTCCAAGACTCGAAATCAAAGGATGATTCAATGGCCTGGCCAGAAGTTTTCCTCACTGAGATAATACTGGCTCTTAAAGAGGCTAATAAGAAAACCAGGAACAGGGCTTATGACATTCTGGTCGAAGTCGCCCATGCATTTGGAGACGAGGAGAAAGGTGGGAACAGAAATAACCTCTATCAATTTTTTATCAAGGTTGCTCGCGGCCTTGTTGGAAAAACTCCACATATGATAAGTGCAACCGTCAAAGGTTTAGCTCGCTTGGCCTATGAATTCTCTGACCTTGCTTTAACTGCTTTTGATTTGCTTCCATCTACATTTGTCCTGCTCGAAAAAAAGAATAAAGAGATAACCAAGGCCAATCTTGGTTTATTAAAGGTTTTAGTAGCCAAATCACAAGCAGAAGGATTGCAAATGCATCTGAAGAGCGTGGTTGAGTGTTTGTTTCAGTGGCAAGATGAAGCCAAAAATCATTTTAAAGCAAAGGTCAAACTTCTTTTAGGGATGCTTATCACGAAGTGTGGATTGGAGGCTGTTAAAGCTGTCCTGCCTGATGAACATATGAAACTTCTGACCAACATACGCAAGATCAAGGAGCGGAAAGAGAGGAACCGAGGTGCTAAATCTGAAGAAACCAGGTCTCATGTTTCAAAAGCAACTACATCCAGGAAAAGTAGATGGAACCATACTGATATTTTTTCGGAGTTTGATGGAGACAGCAAAGGTAGTGATGCAGAATACCTGAACGGCAAGGCAATATCTAGAGGGGGTAAATCTTCCACACATCTCAAATCAGCAGCATCGTCATTCAGGTCCAAGATGAGACTAAAAAACAATATTCCTGAGCACTTGTCTGACGAATCAGATGACGAGCCACTTGATTTGCTTGATCGGCAGAAAGTAAGGTCTGCTCTTAGATCTGAGAATCTCAAAAGGAAGTCCAGGTCAGACGATGATGAGATGGAGGTAGATTCTGAAGGACGTTTGATTATCCGGGAGGAAAGGGAGACGGAGGAAAAACCAGCCGATTCAGAATATGATGCTAGGAGTGAGCCTGATAGTCATTTGTCTGCAAGGTCCGGAACTAAAGCCCAAAAGCGGAGAAGAACAGCAGAGCCTGGTAGGGCTTACACTGGAAAGGAATATGCTAGCAAAAAAGCTGGTGGAGATATTAAGAGGAAGGATAAGCTTGAACCTTATGCATATTGGCCACTTGATCGAAAAATGATGAGTCGTCGGCCACAACATAGGGCTGCTGCAAAAAAAGGTATGGCTACTGTGGTAAATATGACAAAAAGGCTTGAAGGCAAGAGTGCCTCTGGCGTGCTTTCTATGAAGAGTATGAAACTAAAAAGAACTCAAAAGAAAGGTAGCAAGCAATAG
Protein sequence

>Msa0029240

MEGIEMEQPTFNNESNDDICNSILSRFSKSTAVNHQHLCTVIGAMSQELKDHNLPSSPVAYFGATCSSLNRIVPEPNPPDHVIESLLTILSIVIVKVPVAVLKKERESLSELIVKVIHSPPSKNSESVVVDGLKCVSHLLIHRDSVHWSDVSTLFNLLLGFLTDSRSKVRRQSHLGLRDVLINFQKSSLLASASEGVKNLLERFLLLAGGANANAGEGTKGAQQVLYVLDALKECLPLLSLKDKNSILKHFKTLLNLRQPLVTRRIMDALNFICLNSTSEVSSEALLEVLCTLSALSTSSNEISGDGMTFTARLLDAGMKKVFSLNRQMCVIKLPSVFSDLKDILASEHEEAIFAATDALKSMINYCIDESLIKQGVDQITLDESRRSGPTIIEKICATVESLLDYHYAAAWDRVFDVVSAMFHKLGSNSPYFMRGILKNLEDMQKLPDEDFPFRKQLHTCLGSALVAMGPETFLSFIPLNLEAEDLSVSNIWLFPILKQYIVGAHLKYFTDEILPMIGRIREKAQKLEKQGLTVSSRNADALAYSLWSLLPSFCNYPSDTAKSFKDLERHLRSTLKEEPDIRGIICTSLQLLIRQNKNIKDSNDKDDIGQDMAKEQVLVNYSQQVATENLRALEISAKNLLKDLSDVFLKSTKDDGGCLQGTISDIASIAEKKVVQNLFKKKMSDLLKCTQNANRIDGSDSSMQIDASNDDSQSVLRARLLDFAVSLLPGLDTKDIDLLFQVLKPALQDVGVMQKKAYKVLSIILRSSDSFVSSKLEVLLGLMVEILPCHSSAKRHRLDCLYFLILHVMKSEAVKVEFLYFLTVQDSKSKDDSMAWPEVFLTEIILALKEANKKTRNRAYDILVEVAHAFGDEEKGGNRNNLYQFFIKVARGLVGKTPHMISATVKGLARLAYEFSDLALTAFDLLPSTFVLLEKKNKEITKANLGLLKVLVAKSQAEGLQMHLKSVVECLFQWQDEAKNHFKAKVKLLLGMLITKCGLEAVKAVLPDEHMKLLTNIRKIKERKERNRGAKSEETRSHVSKATTSRKSRWNHTDIFSEFDGDSKGSDAEYLNGKAISRGGKSSTHLKSAASSFRSKMRLKNNIPEHLSDESDDEPLDLLDRQKVRSALRSENLKRKSRSDDDEMEVDSEGRLIIREERETEEKPADSEYDARSEPDSHLSARSGTKAQKRRRTAEPGRAYTGKEYASKKAGGDIKRKDKLEPYAYWPLDRKMMSRRPQHRAAAKKGMATVVNMTKRLEGKSASGVLSMKSMKLKRTQKKGSKQ*