AlfalfaGEDB | Msa0790660

M. sativa cultivar zhongmu-4 / Msa0790660

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00646.36

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0790660	XP_024628461.1	99.029	412	4	0	1	412	1	412	0.0	842

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0790660	sp\|Q6Z2G9\|TLP5_ORYSJ	62.937	429	141	5	1	412	1	428	1.32e-176	502

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0790660	A0A072TSP9	99.029	412	4	0	1	412	1	412	0.0	842

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TFs/TRs:

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Gene ID	Type	Classification
Msa0790660	TF	TUB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0790660	0.822837	1.912780e-53	-8.615850e-47
Msa0001790	Msa0790660	-0.808935	2.425543e-50	-8.615850e-47
Msa0003890	Msa0790660	-0.802576	5.253522e-49	-8.615850e-47
Msa0006070	Msa0790660	-0.816133	6.470192e-52	-8.615850e-47
Msa0006110	Msa0790660	-0.828311	9.648193e-55	-8.615850e-47
Msa0006380	Msa0790660	-0.807955	3.925527e-50	-8.615850e-47
Msa0011170	Msa0790660	-0.815086	1.106949e-51	-8.615850e-47
Msa0011960	Msa0790660	-0.826737	2.301618e-54	-8.615850e-47
Msa0012040	Msa0790660	-0.832564	8.796885e-56	-8.615850e-47
Msa0013050	Msa0790660	0.805185	1.508384e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0790660	MtrunA17_Chr8g0373001	99.029	412	4	0	1	412	1	412	0.0	842
Msa0790660	MtrunA17_Chr5g0404321	73.077	416	108	2	1	412	1	416	0.0	630
Msa0790660	MtrunA17_Chr8g0373361	70.416	409	103	7	1	405	11	405	0.0	546
Msa0790660	MtrunA17_Chr1g0155301	59.028	432	147	7	1	412	1	422	2.50e-174	493
Msa0790660	MtrunA17_Chr8g0373331	59.169	409	98	8	1	403	1	346	1.24e-154	441
Msa0790660	MtrunA17_Chr2g0286441	57.182	369	149	3	46	412	32	393	1.96e-147	424
Msa0790660	MtrunA17_Chr2g0278511	52.093	430	185	8	1	412	1	427	1.70e-145	420
Msa0790660	MtrunA17_Chr1g0201891	50.909	440	179	12	1	412	1	431	2.26e-142	412
Msa0790660	MtrunA17_Chr1g0196071	51.190	420	179	6	1	412	1	402	1.34e-141	409
Msa0790660	MtrunA17_Chr2g0315641	51.667	360	144	2	53	412	42	371	5.45e-125	366

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0790660	AT2G18280.2	62.740	416	128	9	1	412	1	393	1.41e-176	498
Msa0790660	AT2G18280.1	62.740	416	128	9	1	412	1	393	1.41e-176	498
Msa0790660	AT2G47900.3	53.125	416	182	6	1	412	1	407	3.16e-148	427
Msa0790660	AT2G47900.2	53.253	415	182	6	1	412	1	406	6.26e-148	426
Msa0790660	AT2G47900.1	53.253	415	182	6	1	412	1	406	6.26e-148	426
Msa0790660	AT1G47270.3	55.164	426	139	11	1	412	1	388	9.02e-148	425
Msa0790660	AT1G47270.2	55.164	426	139	11	1	412	25	412	1.24e-147	425
Msa0790660	AT1G47270.1	55.164	426	139	11	1	412	26	413	1.58e-147	425
Msa0790660	AT1G25280.1	49.666	449	185	9	1	412	1	445	1.57e-140	409
Msa0790660	AT1G76900.2	48.690	458	186	8	1	412	1	455	2.55e-137	400

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Find 138 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACAACAGCACGAGC+AGG	0.453602	5_3:-1529335	None:intergenic
AAAGGTTCACTGAATATTTG+AGG	0.481469	5_3:-1530340	None:intergenic
AAAGTAAGAAGAACGAGAAG+TGG	0.638291	5_3:-1528275	None:intergenic
AAATGCTAGGCATATCCGCA+CGG	0.696473	5_3:+1530796	Msa0790660:three_prime_UTR
AACAATAACACTATAGAATA+CGG	0.447248	5_3:-1528407	None:intergenic
AACCTATTCAACAGGGACAG+TGG	0.631854	5_3:+1529246	Msa0790660:CDS
AACGCGATTCTCCAGAATCG+CGG	0.692412	5_3:+1528228	Msa0790660:five_prime_UTR
AAGCATAGTCCGCGAACTCA+AGG	0.507358	5_3:+1529121	Msa0790660:CDS
AAGGCTTGGAAGGCAGAGAG+TGG	0.610317	5_3:-1530676	None:intergenic
AATAGGTAGCATATCAAAGC+GGG	0.526116	5_3:+1529157	Msa0790660:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAAGGTTTATTATGGTCA+AGG	-	chr5_3:1528682-1528701	None:intergenic	30.0%
GCTACATGGTTATATTTGTT+TGG	+	chr5_3:1528989-1529008	Msa0790660:intron	30.0%
TGATCCTAACAAAAACACAA+AGG	-	chr5_3:1529039-1529058	None:intergenic	30.0%
ATTATGTCCAAAAGCAATTC+AGG	-	chr5_3:1529284-1529303	None:intergenic	30.0%
ATTTCCTATTTCATTGAAGC+AGG	+	chr5_3:1529436-1529455	Msa0790660:CDS	30.0%
ATTACCTGCTTCAATGAAAT+AGG	-	chr5_3:1529443-1529462	None:intergenic	30.0%
GAAATTCAACATTCATAGTC+AGG	-	chr5_3:1529684-1529703	None:intergenic	30.0%
ATTTATTGCGATTTAGACTG+TGG	+	chr5_3:1529736-1529755	Msa0790660:intron	30.0%
AGGATGAAAAGCTGATATAA+GGG	-	chr5_3:1530012-1530031	None:intergenic	30.0%
TAGGATGAAAAGCTGATATA+AGG	-	chr5_3:1530013-1530032	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	1528101	1531112	1528101	ID=Msa0790660;Name=Msa0790660
chr5_3	mRNA	1528101	1531112	1528101	ID=Msa0790660-mRNA-1;Parent=Msa0790660;Name=Msa0790660-mRNA-1;_AED=0.05;_eAED=0.05;_QI=413\|1\|1\|1\|0.75\|0.6\|5\|368\|412
chr5_3	exon	1528101	1528457	1528101	ID=Msa0790660-mRNA-1:exon:547;Parent=Msa0790660-mRNA-1
chr5_3	exon	1529054	1529457	1529054	ID=Msa0790660-mRNA-1:exon:548;Parent=Msa0790660-mRNA-1
chr5_3	exon	1529557	1529644	1529557	ID=Msa0790660-mRNA-1:exon:549;Parent=Msa0790660-mRNA-1
chr5_3	exon	1529849	1529978	1529849	ID=Msa0790660-mRNA-1:exon:550;Parent=Msa0790660-mRNA-1
chr5_3	exon	1530072	1531112	1530072	ID=Msa0790660-mRNA-1:exon:551;Parent=Msa0790660-mRNA-1
chr5_3	five_prime_UTR	1528101	1528457	1528101	ID=Msa0790660-mRNA-1:five_prime_utr;Parent=Msa0790660-mRNA-1
chr5_3	five_prime_UTR	1529054	1529109	1529054	ID=Msa0790660-mRNA-1:five_prime_utr;Parent=Msa0790660-mRNA-1
chr5_3	CDS	1529110	1529457	1529110	ID=Msa0790660-mRNA-1:cds;Parent=Msa0790660-mRNA-1
chr5_3	CDS	1529557	1529644	1529557	ID=Msa0790660-mRNA-1:cds;Parent=Msa0790660-mRNA-1
chr5_3	CDS	1529849	1529978	1529849	ID=Msa0790660-mRNA-1:cds;Parent=Msa0790660-mRNA-1
chr5_3	CDS	1530072	1530744	1530072	ID=Msa0790660-mRNA-1:cds;Parent=Msa0790660-mRNA-1
chr5_3	three_prime_UTR	1530745	1531112	1530745	ID=Msa0790660-mRNA-1:three_prime_utr;Parent=Msa0790660-mRNA-1

Gene Sequence

>Msa0790660

ATGTCATTCAAAAGCATAGTCCGCGAACTCAAGGGGATGAAAAATGGAATAGGTAGCATATCAAAGCGGGGTTCCGACACCAAGAATTGGCTATGTCGGTCAAAGTCACATGTTGCTCCGGATGTAACTCCAATTGAACCTATTCAACAGGGACAGTGGGCGAGTCTACCTCCTGAATTGCTTTTGGACATAATCCGTAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCTCGTGCTGTTGTTGTTTTTTGTGCTTCGGTATGTAAATCATGGAGGTCCGTTACTAAAGAGATTATCAAGACTCCTCAGCAATGCGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCCGGTCCTCGTGATTATCCGATCCAGTGCTTTATTAGGAGGAACAGAGAAACTTCTACCTTCGTGTTGTACTTAGGTTTGGTGCCATCGGAGCATGAGAGTAATAAGTTGTTGTTAGCCGCCAGAAAGATAAGAAGGGCCACAGGCACCGACTTTGTCATATCCTTGGGCACAGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTGAGGTCTAATTTTTGGGGAACCAAGTTTGCTATATATGACAACCAACCTCCACATGACGCTGCAGTTCAACCTAATCGTCGACCAAGTGCGAGACTTAATTCTAAGCAGGTGTCATCAAGAGTTCCAGCATGTAACAATCTTGTTGGCACCATTTCCTATGAGCTAAATGCTCTCTGGACAAGAGGGCCAAGAAGAGTGCACTGCATCATGAACTCTATACCTATCTCAGCTATTCAGGAAGGGGGTATCGCCCCAACCCCAACATCGTTACCTCAAATATTCAGTGAACCTTTTCCTCCCTCACCAGCACTGAAAGAAAAAAGTCCAATGACAGATTCGTACTCTGGTTGCCTATCAGAGCTACCAGAACCGAGCCAAGGCTCGATGGACTCCTTGGTACTTAAAAACAAGTCTCCTAGGTGGCATGAGCAGCTCCAGTGTTGGTGCCTAAACTTTATGGGTCGTGTTACAGTGGCATCTGTTAAGAACTTTCAACTTGTAGCTTCTGTTGATCCGTCTCATAATGTTTCTTCCGCTGAGCAAGAAAGGGTAATCTTACAGTTTGGAAAGATTGGAAAAGATATATTCACCATGGACTACTCTTACCCACTCTCTGCCTTCCAAGCCTTTGCAATCTGTTTGACAAGCTTTGATACCAAACCTGCTTGTGAATGA

Protein sequence

>Msa0790660

MSFKSIVRELKGMKNGIGSISKRGSDTKNWLCRSKSHVAPDVTPIEPIQQGQWASLPPELLLDIIRRVEESETSWPARAVVVFCASVCKSWRSVTKEIIKTPQQCGRITFPISLKQPGPRDYPIQCFIRRNRETSTFVLYLGLVPSEHESNKLLLAARKIRRATGTDFVISLGTDDFSRASNKYVGKLRSNFWGTKFAIYDNQPPHDAAVQPNRRPSARLNSKQVSSRVPACNNLVGTISYELNALWTRGPRRVHCIMNSIPISAIQEGGIAPTPTSLPQIFSEPFPPSPALKEKSPMTDSYSGCLSELPEPSQGSMDSLVLKNKSPRWHEQLQCWCLNFMGRVTVASVKNFQLVASVDPSHNVSSAEQERVILQFGKIGKDIFTMDYSYPLSAFQAFAICLTSFDTKPACE*