AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0741520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741520 MtrunA17_Chr5g0442921 96.583 556 19 0 1 556 1 556 0.0 1126
Msa0741520 MtrunA17_Chr3g0095891 78.700 446 89 4 113 556 20 461 0.0 709
Msa0741520 MtrunA17_Chr2g0328821 98.895 181 2 0 571 751 14 194 2.29e-127 377
Msa0741520 MtrunA17_Chr5g0442931 100.000 178 0 0 574 751 1 178 8.73e-127 375
Msa0741520 MtrunA17_Chr5g0442901 100.000 178 0 0 574 751 1 178 8.73e-127 375
Msa0741520 MtrunA17_Chr3g0095911 94.382 178 10 0 574 751 1 178 4.54e-119 355
Msa0741520 MtrunA17_Chr1g0210201 38.120 383 205 9 174 553 114 467 6.87e-74 247
Msa0741520 MtrunA17_Chr7g0275731 38.409 440 230 13 116 553 84 484 2.87e-73 246
Msa0741520 MtrunA17_Chr3g0130931 37.844 436 233 16 125 554 46 449 7.75e-73 244
Msa0741520 MtrunA17_Chr1g0212321 32.639 432 262 10 125 553 81 486 4.38e-66 227
Msa0741520 MtrunA17_Chr4g0001991 34.184 392 227 12 170 554 151 518 7.29e-61 213
Msa0741520 MtrunA17_Chr2g0291201 32.134 417 244 13 143 553 68 451 1.74e-59 208
Msa0741520 MtrunA17_Chr1g0165201 31.435 474 258 12 89 553 54 469 1.79e-58 206
Msa0741520 MtrunA17_Chr6g0484901 35.989 364 204 9 191 553 156 491 4.27e-57 202
Msa0741520 MtrunA17_Chr8g0390761 30.591 389 233 7 173 554 98 456 1.41e-56 200
Msa0741520 MtrunA17_Chr2g0307991 34.625 387 214 12 179 554 47 405 9.24e-56 196
Msa0741520 MtrunA17_Chr2g0310821 34.884 387 216 15 174 556 91 445 1.37e-55 197
Msa0741520 MtrunA17_Chr2g0310831 33.508 382 220 11 182 554 85 441 1.94e-55 196
Msa0741520 MtrunA17_Chr5g0415951 33.784 370 224 11 187 554 85 435 1.55e-54 194
Msa0741520 MtrunA17_Chr3g0099891 32.884 371 216 9 187 553 113 454 5.82e-54 193
Msa0741520 MtrunA17_Chr5g0419291 32.506 403 250 11 152 553 47 428 9.42e-54 191
Msa0741520 MtrunA17_Chr5g0395931 34.309 376 210 15 190 554 87 436 7.15e-51 184
Msa0741520 MtrunA17_Chr5g0435871 33.596 381 226 12 179 554 77 435 3.97e-50 182
Msa0741520 MtrunA17_Chr8g0386441 31.188 404 257 10 152 554 47 430 5.72e-50 181
Msa0741520 MtrunA17_Chr8g0352661 31.951 410 253 11 152 554 47 437 9.43e-50 181
Msa0741520 MtrunA17_Chr8g0352671 32.619 420 250 14 145 554 41 437 1.11e-49 180
Msa0741520 MtrunA17_Chr5g0435971 33.943 383 222 12 179 554 74 432 1.89e-49 179
Msa0741520 MtrunA17_Chr3g0099901 34.933 375 219 9 182 553 133 485 1.79e-48 178
Msa0741520 MtrunA17_Chr2g0308001 32.587 402 228 14 171 555 35 410 4.29e-48 176
Msa0741520 MtrunA17_Chr2g0333991 29.670 455 248 18 116 550 30 432 7.42e-48 175
Msa0741520 MtrunA17_Chr3g0087851 31.880 367 227 10 192 554 90 437 2.58e-47 174
Msa0741520 MtrunA17_Chr5g0395911 30.152 461 258 18 106 554 6 414 1.88e-46 171
Msa0741520 MtrunA17_Chr2g0310801 32.727 385 232 13 174 554 73 434 2.38e-45 168
Msa0741520 MtrunA17_Chr7g0267171 30.807 409 214 18 190 557 89 469 2.63e-45 169
Msa0741520 MtrunA17_Chr2g0311451 30.303 429 232 17 141 554 60 436 1.24e-44 166
Msa0741520 MtrunA17_Chr6g0486981 29.978 447 256 19 121 554 35 437 1.32e-43 163
Msa0741520 MtrunA17_Chr6g0487471 32.727 385 233 11 177 555 72 436 1.55e-42 160
Msa0741520 MtrunA17_Chr6g0457401 32.514 366 224 11 192 554 92 437 3.38e-41 156
Msa0741520 MtrunA17_Chr2g0309561 26.978 493 269 13 108 553 60 508 4.05e-41 157
Msa0741520 MtrunA17_Chr4g0023351 39.914 233 125 7 180 409 47 267 8.34e-41 151
Msa0741520 MtrunA17_Chr4g0027681 29.750 400 244 14 189 571 75 454 2.07e-39 152
Msa0741520 MtrunA17_Chr5g0395871 31.117 376 230 14 185 555 75 426 4.70e-38 147
Msa0741520 MtrunA17_Chr8g0353261 32.995 394 223 16 172 554 71 434 5.23e-37 144
Msa0741520 MtrunA17_Chr1g0164401 32.172 373 217 14 187 554 88 429 5.85e-37 144
Msa0741520 MtrunA17_Chr2g0320621 29.146 398 248 12 190 571 76 455 2.75e-36 143
Msa0741520 MtrunA17_Chr4g0061641 32.295 353 211 13 206 554 69 397 4.42e-34 135
Msa0741520 MtrunA17_Chr5g0399171 26.216 473 270 18 131 554 28 470 1.61e-33 135
Msa0741520 MtrunA17_Chr2g0312941 28.117 409 239 13 168 550 71 450 5.17e-33 133
Msa0741520 MtrunA17_Chr4g0056211 28.846 468 247 22 140 554 37 471 6.90e-33 133
Msa0741520 MtrunA17_Chr4g0053721 25.707 389 237 13 187 555 76 432 7.92e-32 132
Msa0741520 MtrunA17_Chr1g0179751 26.812 414 260 14 186 581 103 491 2.93e-31 129
Msa0741520 MtrunA17_Chr1g0179091 28.686 373 205 12 189 554 49 367 3.17e-31 125
Msa0741520 MtrunA17_Chr5g0434411 27.107 439 258 17 142 557 42 441 6.22e-31 126
Msa0741520 MtrunA17_Chr7g0265331 26.368 402 255 14 190 572 80 459 1.53e-30 126
Msa0741520 MtrunA17_Chr5g0419151 31.118 331 201 11 232 554 57 368 1.70e-30 124
Msa0741520 MtrunA17_Chr2g0307461 28.686 373 242 10 192 553 71 430 1.79e-30 125
Msa0741520 MtrunA17_Chr5g0401601 25.581 387 248 13 187 559 84 444 2.69e-30 127
Msa0741520 MtrunA17_Chr2g0286131 62.353 85 32 0 665 749 1 85 3.42e-30 115
Msa0741520 MtrunA17_Chr3g0110191 27.577 388 217 16 194 554 89 439 4.43e-30 124
Msa0741520 MtrunA17_Chr1g0189381 28.392 398 235 16 183 556 61 432 3.52e-29 122
Msa0741520 MtrunA17_Chr7g0239001 27.157 394 223 14 194 553 62 425 2.64e-27 115
Msa0741520 MtrunA17_Chr5g0406001 27.114 402 228 16 185 560 106 468 5.83e-27 115
Msa0741520 MtrunA17_Chr3g0133071 30.548 383 228 13 179 553 85 437 1.64e-26 113
Msa0741520 MtrunA17_Chr8g0384731 28.535 389 219 19 190 554 72 425 2.91e-26 112
Msa0741520 MtrunA17_Chr7g0249451 25.959 443 251 17 183 589 63 464 3.05e-26 113
Msa0741520 MtrunA17_Chr3g0112051 26.455 378 208 15 198 553 80 409 8.93e-26 110
Msa0741520 MtrunA17_Chr7g0221681 25.510 392 241 12 190 556 71 436 2.59e-25 110
Msa0741520 MtrunA17_Chr8g0371371 28.125 384 221 18 192 555 113 461 4.76e-25 110
Msa0741520 MtrunA17_Chr1g0185651 25.436 401 233 14 191 549 56 432 5.80e-25 108
Msa0741520 MtrunA17_Chr5g0425141 26.632 383 229 17 198 561 108 457 6.80e-23 103
Msa0741520 MtrunA17_Chr5g0395891 29.114 316 195 14 246 554 20 313 7.03e-23 100
Msa0741520 MtrunA17_Chr2g0287821 24.370 476 274 18 109 549 15 439 3.16e-22 100
Msa0741520 MtrunA17_Chr1g0187841 26.256 438 224 21 160 548 30 417 5.25e-22 99.8
Msa0741520 MtrunA17_Chr3g0082281 30.594 219 135 8 341 554 114 320 6.24e-22 97.4
Msa0741520 MtrunA17_Chr8g0352691 29.603 277 176 9 279 554 2 260 6.69e-22 96.3
Msa0741520 MtrunA17_Chr3g0130741 26.667 390 224 16 190 554 83 435 1.13e-21 99.0
Msa0741520 MtrunA17_Chr5g0434441 26.253 419 243 16 166 560 57 433 1.60e-21 98.2
Msa0741520 MtrunA17_Chr1g0185661 25.361 485 281 23 155 601 24 465 1.68e-21 100
Msa0741520 MtrunA17_Chr1g0185661 23.469 392 232 16 200 551 706 1069 1.38e-18 90.9
Msa0741520 MtrunA17_Chr1g0159791 26.753 385 230 16 190 553 56 409 2.38e-21 97.4
Msa0741520 MtrunA17_Chr8g0371351 26.835 395 214 18 192 555 101 451 3.93e-21 97.8
Msa0741520 MtrunA17_Chr4g0010951 25.986 431 236 17 175 553 46 445 4.09e-21 97.1
Msa0741520 MtrunA17_Chr6g0484731 26.490 453 246 21 132 553 154 550 7.98e-20 94.0
Msa0741520 MtrunA17_Chr3g0124421 26.277 411 235 19 173 555 82 452 6.92e-19 90.9
Msa0741520 MtrunA17_Chr4g0065581 21.792 413 246 13 191 549 49 438 1.83e-16 82.8
Msa0741520 MtrunA17_Chr2g0287861 24.806 387 227 14 192 540 44 404 2.89e-16 82.0
Msa0741520 MtrunA17_Chr8g0352681 46.250 80 43 0 173 252 69 148 9.94e-16 75.5
Msa0741520 MtrunA17_Chr2g0287781 23.913 414 247 17 196 569 967 1352 2.78e-14 77.4
Msa0741520 MtrunA17_Chr2g0287781 24.528 424 246 20 196 579 505 894 8.57e-13 72.4
Msa0741520 MtrunA17_Chr2g0287841 23.650 389 229 17 192 540 68 428 4.01e-14 75.5
Msa0741520 MtrunA17_Chr4g0019931 38.298 94 50 3 198 285 3 94 4.68e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741520 AT3G59080.1 63.206 549 175 4 9 555 11 534 0.0 684
Msa0741520 AT3G59080.2 58.652 549 164 5 9 555 11 498 0.0 608
Msa0741520 AT2G42980.1 66.368 446 133 4 114 555 94 526 0.0 594
Msa0741520 AT2G34480.2 85.638 188 27 0 564 751 30 217 4.63e-113 341
Msa0741520 AT2G34480.1 90.230 174 17 0 578 751 5 178 1.23e-112 338
Msa0741520 AT1G29965.1 88.506 174 20 0 578 751 5 178 9.02e-111 334
Msa0741520 AT3G14600.1 87.079 178 23 0 574 751 1 178 1.78e-109 330
Msa0741520 AT1G29970.2 89.017 173 19 0 579 751 140 312 8.64e-108 331
Msa0741520 AT3G25700.1 42.119 387 198 11 183 554 75 450 3.87e-82 269
Msa0741520 AT1G25510.1 37.554 466 250 12 89 553 58 483 5.99e-77 256
Msa0741520 AT1G01300.1 38.152 422 221 10 143 554 94 485 5.39e-74 248
Msa0741520 AT3G18490.1 36.564 454 222 15 129 553 84 500 1.44e-70 239
Msa0741520 AT2G03200.1 33.913 460 257 15 112 553 28 458 2.13e-70 238
Msa0741520 AT5G10770.1 36.058 416 235 11 142 554 87 474 2.27e-65 225
Msa0741520 AT3G61820.1 34.894 470 241 12 99 553 64 483 6.93e-65 224
Msa0741520 AT1G79720.1 31.828 443 269 11 121 553 63 482 1.89e-59 209
Msa0741520 AT3G20015.1 31.350 437 274 9 118 553 59 470 3.16e-59 208
Msa0741520 AT3G12700.1 32.642 386 229 12 181 554 95 461 1.88e-53 192
Msa0741520 AT5G33340.1 34.688 369 218 10 189 554 87 435 3.83e-53 190
Msa0741520 AT1G64830.1 31.762 403 252 11 155 554 47 429 1.54e-49 180
Msa0741520 AT2G35615.1 30.266 413 248 12 161 554 53 444 9.35e-49 178
Msa0741520 AT1G31450.1 32.461 382 237 11 181 554 74 442 1.27e-47 175
Msa0741520 AT5G10760.1 32.000 425 243 12 130 553 85 464 1.99e-47 175
Msa0741520 AT3G54400.1 31.139 395 228 14 173 554 62 425 4.80e-45 167
Msa0741520 AT4G30040.1 28.571 434 274 10 126 548 19 427 7.62e-45 167
Msa0741520 AT3G52500.1 29.556 450 261 19 141 554 39 468 6.61e-43 162
Msa0741520 AT2G28040.2 29.847 392 230 12 167 554 32 382 6.86e-42 157
Msa0741520 AT2G28040.1 30.435 368 212 11 191 554 64 391 1.96e-41 156
Msa0741520 AT2G28010.1 29.235 366 218 9 192 554 65 392 1.85e-40 154
Msa0741520 AT4G30030.1 30.159 378 212 16 192 553 78 419 1.72e-38 149
Msa0741520 AT5G07030.1 31.591 421 239 17 152 554 66 455 3.24e-37 145
Msa0741520 AT5G22850.1 28.536 403 244 14 190 571 79 458 3.00e-36 144
Msa0741520 AT1G09750.1 30.000 400 236 16 166 553 81 448 1.45e-35 140
Msa0741520 AT2G28030.1 28.997 369 215 11 192 554 61 388 2.50e-34 135
Msa0741520 AT2G28220.1 26.498 434 257 13 129 554 19 398 3.70e-33 132
Msa0741520 AT2G28225.1 27.763 371 221 10 192 554 67 398 3.81e-33 132
Msa0741520 AT5G43100.2 26.772 381 235 15 187 555 71 419 8.54e-32 130
Msa0741520 AT5G43100.1 26.772 381 235 15 187 555 71 419 1.27e-31 131
Msa0741520 AT2G36670.2 28.101 395 237 17 190 561 98 468 1.60e-31 130
Msa0741520 AT4G12920.1 30.933 375 216 16 173 541 38 375 2.91e-31 127
Msa0741520 AT2G36670.1 27.990 393 236 17 192 561 105 473 4.04e-31 129
Msa0741520 AT5G36260.1 25.980 408 256 14 190 577 76 457 4.32e-31 128
Msa0741520 AT1G77480.1 27.955 440 261 16 155 570 31 438 5.71e-31 127
Msa0741520 AT1G77480.2 28.266 421 248 15 155 553 31 419 6.16e-31 127
Msa0741520 AT2G36670.4 27.990 393 236 17 192 561 34 402 1.29e-30 126
Msa0741520 AT2G36670.3 27.990 393 236 17 192 561 34 402 1.29e-30 126
Msa0741520 AT1G05840.1 27.570 428 247 17 190 592 78 467 1.49e-30 126
Msa0741520 AT1G08210.1 26.972 393 251 13 190 565 82 455 4.32e-30 125
Msa0741520 AT1G08210.4 26.972 393 251 13 190 565 116 489 4.60e-30 125
Msa0741520 AT1G08210.3 26.972 393 251 13 190 565 130 503 4.84e-30 125
Msa0741520 AT2G23945.1 31.135 379 218 18 192 553 96 448 6.68e-30 124
Msa0741520 AT4G33490.2 27.317 410 206 17 190 558 58 416 1.81e-29 122
Msa0741520 AT1G66180.1 28.571 378 221 17 198 554 78 427 2.64e-29 122
Msa0741520 AT5G45120.1 27.187 423 236 19 192 561 83 486 8.03e-29 121
Msa0741520 AT1G65240.1 26.355 406 254 13 190 577 72 450 1.07e-28 120
Msa0741520 AT5G02190.1 26.566 399 231 15 201 564 82 453 1.42e-28 120
Msa0741520 AT2G39710.1 26.247 381 227 15 198 549 71 426 1.07e-27 117
Msa0741520 AT5G37540.1 27.660 376 229 15 198 553 86 438 1.29e-27 117
Msa0741520 AT3G50050.1 24.935 385 243 14 187 557 88 440 1.69e-26 115
Msa0741520 AT3G02740.1 25.781 384 240 16 190 554 83 440 4.86e-26 113
Msa0741520 AT1G08210.2 26.190 420 247 16 190 565 82 482 1.56e-25 112
Msa0741520 AT3G02740.2 25.654 382 239 16 192 554 10 365 2.13e-25 110
Msa0741520 AT3G25700.2 43.796 137 70 4 183 316 75 207 1.22e-24 106
Msa0741520 AT3G25700.2 42.029 138 71 4 423 554 214 348 4.01e-23 102
Msa0741520 AT1G44130.1 27.020 396 226 16 190 559 47 405 2.32e-22 100
Msa0741520 AT4G33490.1 27.322 366 177 16 190 517 55 369 2.43e-22 100
Msa0741520 AT2G17760.1 26.786 392 211 17 192 553 104 449 5.26e-22 100
Msa0741520 AT3G51350.1 27.525 396 234 18 179 553 89 452 7.31e-22 100
Msa0741520 AT4G35880.1 26.366 421 234 18 192 581 107 482 1.25e-21 99.8
Msa0741520 AT1G49050.1 25.628 398 232 19 190 553 201 568 3.55e-19 92.4
Msa0741520 AT1G49050.2 25.505 396 231 19 192 553 30 395 4.92e-19 90.9
Msa0741520 AT4G16563.1 27.778 414 210 19 209 554 100 492 5.71e-19 91.3
Msa0741520 AT5G10080.1 26.055 403 235 17 180 555 89 455 1.61e-18 90.1
Msa0741520 AT3G51360.9 26.582 395 225 18 192 561 99 453 3.07e-18 89.0
Msa0741520 AT3G51360.7 26.582 395 225 18 192 561 5 359 3.43e-18 88.2
Msa0741520 AT3G51360.1 26.582 395 225 18 192 561 89 443 4.54e-18 88.6
Msa0741520 AT3G51330.1 25.984 381 234 13 192 553 102 453 6.59e-17 85.1
Msa0741520 AT3G51330.3 25.984 381 234 13 192 553 102 453 7.61e-17 84.3
Msa0741520 AT1G03230.1 23.969 388 232 17 200 549 53 415 1.25e-16 83.6
Msa0741520 AT3G51340.2 26.893 383 221 19 192 553 103 447 1.51e-16 84.0
Msa0741520 AT1G49050.3 27.562 283 164 14 190 458 201 456 5.52e-15 78.6
Msa0741520 AT3G51340.3 28.146 302 169 14 192 476 103 373 2.08e-14 76.6
Msa0741520 AT3G51340.1 25.510 392 227 17 192 553 103 459 3.46e-14 76.6
Msa0741520 AT3G51330.2 26.404 356 214 13 192 528 102 428 8.27e-14 75.1
Msa0741520 AT3G51340.4 28.777 278 151 13 192 453 103 349 1.28e-13 73.9
Msa0741520 AT3G51360.10 26.494 385 210 20 192 544 89 432 4.82e-13 72.4
Msa0741520 AT3G42550.1 39.394 99 57 1 187 285 73 168 5.96e-13 72.0
Msa0741520 AT3G51360.6 26.494 385 210 20 192 544 99 442 6.39e-13 72.0
Msa0741520 AT3G51360.3 25.872 344 199 16 234 561 14 317 1.29e-11 67.4
Msa0741520 AT3G51360.8 25.872 344 199 16 234 561 14 317 1.29e-11 67.4
Msa0741520 AT3G51360.4 26.235 324 185 16 192 497 89 376 8.21e-11 65.1
Msa0741520 AT5G19120.1 22.680 388 242 15 187 558 40 385 9.78e-11 65.1

Find 157 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGTTTGTTTGGCTATTT+TGG 0.074194 5_1:+61240198 Msa0741520:CDS
AAAATGGAGCTACCTGATTT+TGG 0.131818 5_1:+61240106 Msa0741520:CDS
AAGTCTGCTCTTTCAATTAT+TGG 0.170841 5_1:+61240229 Msa0741520:CDS
AACATAGACTTACCAGAATT+TGG 0.177369 5_1:-61243034 None:intergenic
CACCAGAGGGAACTTGATTT+TGG 0.187302 5_1:-61244678 None:intergenic
CATAAACAGGTTGGGCTTCT+TGG 0.201042 5_1:-61244750 None:intergenic
TTCTCAAATTCAGACAAATT+TGG 0.204873 5_1:+61238846 Msa0741520:CDS
AAAGAAGTGAAATTCAAATT+AGG 0.207711 5_1:-61239806 None:intergenic
CATGGTGCTGCTGGTTTGTT+AGG 0.240944 5_1:+61239638 Msa0741520:CDS
AGATTAAGAACTATGGAATT+TGG 0.243479 5_1:+61244456 Msa0741520:CDS
GAAAAGCAATGGACAAGTTT+TGG 0.246012 5_1:+61243199 Msa0741520:CDS
ACTATTGTGATTGTGGTTAA+TGG 0.248392 5_1:-61238730 None:intergenic
GTTGGGCTTCTTGGCTTTGT+AGG 0.248408 5_1:-61244741 None:intergenic
TGTTGGGATAAAATCTATTA+TGG 0.260709 5_1:+61239868 Msa0741520:CDS
TCAAAAGAACTAGATTCTTT+AGG 0.260753 5_1:-61239374 None:intergenic
AGTCTGCTCTTTCAATTATT+GGG 0.291554 5_1:+61240230 Msa0741520:CDS
TCTCAGCTTCAATCTATCTT+TGG 0.293183 5_1:+61239689 Msa0741520:CDS
AGTGGAGTTGCTTGATTTAT+CGG 0.302374 5_1:+61244797 Msa0741520:three_prime_UTR
TATTTCATGGATGTGTTTAT+AGG 0.306868 5_1:+61239242 Msa0741520:CDS
GACAAATGCCAAGTTTCTTC+TGG 0.317438 5_1:-61239914 None:intergenic
ACGAAATGGCATCTCGTCAT+AGG 0.320455 5_1:+61244567 Msa0741520:CDS
AGATTTATCGTATGAAGCTT+TGG 0.340515 5_1:+61242986 Msa0741520:CDS
GACTTACCAGAATTTGGATT+TGG 0.342784 5_1:-61243028 None:intergenic
TGGCTCTGGTGAGTATTTCA+TGG 0.347558 5_1:+61239229 Msa0741520:CDS
GATTTATCGTATGAAGCTTT+GGG 0.356570 5_1:+61242987 Msa0741520:CDS
CGGAGCAACTGCTGCCTTGT+AGG 0.357034 5_1:-61239141 None:intergenic
AGCAAAATCACCAGTTGTAT+TGG 0.358588 5_1:-61239510 None:intergenic
CCTACCAAGATTAAGAACTA+TGG 0.366976 5_1:+61244449 Msa0741520:CDS
TATCACAAGTAGAATCAAAA+AGG 0.369440 5_1:-61238688 None:intergenic
TCACCATACCAGTAGAAATA+AGG 0.369925 5_1:-61239482 None:intergenic
GATTCTTTAGGATCATAATA+TGG 0.370511 5_1:-61239362 None:intergenic
TTCGTGCCAAATCCAAATTC+TGG 0.381119 5_1:+61243022 Msa0741520:CDS
CGATCACTTTGTTTCAAAGT+AGG 0.382486 5_1:+61244996 Msa0741520:three_prime_UTR
AAGAAGTGAAATTCAAATTA+GGG 0.382689 5_1:-61239805 None:intergenic
CTTGTGGCAACTTTGGAATC+AGG 0.388227 5_1:+61239197 Msa0741520:CDS
TTATGTTTGGTTGTGGTCAT+TGG 0.389748 5_1:+61239600 Msa0741520:CDS
TATTCTTTGATACTTGATAC+TGG 0.392332 5_1:+61239281 Msa0741520:CDS
GTTAATCTCACCACTCCTAA+TGG 0.394938 5_1:+61239548 Msa0741520:CDS
TCCCGGCTAATCTGTGCAAA+AGG 0.396699 5_1:+61244630 Msa0741520:CDS
TGAGCCTAATGTTGTTTGTT+TGG 0.398022 5_1:+61240189 Msa0741520:CDS
TCCGGTGAAGCTGCCGCAAC+CGG 0.399623 5_1:-61239161 None:intergenic
GAAAATAATATCCCAAAATC+AGG 0.400100 5_1:-61240118 None:intergenic
AAGTCAGCTTGTGGCAACTT+TGG 0.403598 5_1:+61239190 Msa0741520:CDS
AATTCCATAGTTCTTAATCT+TGG 0.403701 5_1:-61244453 None:intergenic
ATTCACTGAATCACATAAAC+AGG 0.404006 5_1:-61244763 None:intergenic
TGGTGGCTGTCTTAATGATC+TGG 0.405710 5_1:-61244607 None:intergenic
GGACTATTTCATGGTGCTGC+TGG 0.406845 5_1:+61239629 Msa0741520:CDS
GTAATTGTGTCCAGCCTTGT+AGG 0.407715 5_1:+61245128 Msa0741520:three_prime_UTR
TCAAATGAAACTTCACAGAT+TGG 0.409696 5_1:-61238947 None:intergenic
GGTGGTGCAATAATTGATTC+TGG 0.411686 5_1:+61239950 Msa0741520:CDS
AAACTTGTCCTTATTTCTAC+TGG 0.418870 5_1:+61239474 Msa0741520:CDS
ATAGCCAAACAAACAACATT+AGG 0.420495 5_1:-61240193 None:intergenic
ATACTGGTAGTGATCTCAAT+TGG 0.420511 5_1:+61239297 Msa0741520:CDS
GCTCATTCAGTACGAGCATC+TGG 0.422783 5_1:-61245069 None:intergenic
ACATTATAACATGGCTTAAG+AGG 0.424250 5_1:-61240070 None:intergenic
GGCAGCAGTTGCTCCGGTTG+CGG 0.424796 5_1:+61239148 Msa0741520:CDS
TTACAAGGCTTAGGTGGATC+TGG 0.426553 5_1:-61239440 None:intergenic
TGGAATAGAGGACTATTTCA+TGG 0.432658 5_1:+61239620 Msa0741520:CDS
AGCTTCATACGATAAATCTT+AGG 0.433968 5_1:-61242982 None:intergenic
TGTCCTTATTTCTACTGGTA+TGG 0.436510 5_1:+61239479 Msa0741520:CDS
GGATTTGGCACGAACCTCAT+TGG 0.442665 5_1:-61243013 None:intergenic
CACAATAGTCTCAAGAAGAA+TGG 0.444767 5_1:+61238744 Msa0741520:CDS
TCCGGTTGCGGCAGCTTCAC+CGG 0.448118 5_1:+61239160 Msa0741520:CDS
TACCGTGATACTACTCTAAA+CGG 0.448863 5_1:+61244524 Msa0741520:CDS
ATTGTTGTAGGTATTTCTTA+AGG 0.449683 5_1:+61243159 Msa0741520:intron
CATGTGGAAAATGTTATGTT+TGG 0.451414 5_1:+61239587 Msa0741520:CDS
TAAACATCAGAACACTTCAT+TGG 0.453128 5_1:-61240316 None:intergenic
GGTTGTGGTCATTGGAATAG+AGG 0.457397 5_1:+61239608 Msa0741520:CDS
GATCACTTTGTTTCAAAGTA+GGG 0.457736 5_1:+61244997 Msa0741520:three_prime_UTR
TTTCTTAAGGAAGTTGAAGA+AGG 0.460521 5_1:+61243172 Msa0741520:CDS
CTCTGGTGTACAAGAAGATT+AGG 0.461451 5_1:+61244693 Msa0741520:CDS
GCTGCTGGTTTGTTAGGATT+AGG 0.462370 5_1:+61239644 Msa0741520:CDS
AGAATCAAAACACAATTTCA+AGG 0.465837 5_1:+61239078 Msa0741520:CDS
TCTTGAGACTATTGTGATTG+TGG 0.466264 5_1:-61238737 None:intergenic
AAGCCATGTTATAATGTGTC+AGG 0.469939 5_1:+61240076 Msa0741520:CDS
TTGATGTACTGTTATAAGCT+CGG 0.476925 5_1:+61244961 Msa0741520:three_prime_UTR
AGCTGAGAAGCAAATGATAA+TGG 0.478812 5_1:-61239674 None:intergenic
GGTGATAGTTCCAATACAAC+TGG 0.480298 5_1:+61239500 Msa0741520:CDS
TTCTCATCTTTACAAGGCTT+AGG 0.484158 5_1:-61239449 None:intergenic
CTGAATCACATAAACAGGTT+GGG 0.486125 5_1:-61244758 None:intergenic
AAGGGTTATGAACTTGTTGA+GGG 0.489556 5_1:+61240040 Msa0741520:CDS
CTCTTCCGACAACCTGGTAC+TGG 0.493497 5_1:-61242933 None:intergenic
GAAAATGTTATGTTTGGTTG+TGG 0.495192 5_1:+61239593 Msa0741520:CDS
AGATTGAGAACCGCCGCCGC+TGG 0.496335 5_1:-61242764 None:intergenic
TTGGAATCAGGAGTGAGTCT+TGG 0.497066 5_1:+61239209 Msa0741520:CDS
TGGCATCTCGTCATAGGGTC+AGG 0.499078 5_1:+61244573 Msa0741520:CDS
ATAAAATCTATTATGGTTGA+TGG 0.499624 5_1:+61239875 Msa0741520:CDS
AGTATCAAAGAATAATGCTT+AGG 0.501103 5_1:-61239272 None:intergenic
TAAGGGTTATGAACTTGTTG+AGG 0.503265 5_1:+61240039 Msa0741520:CDS
AAATAAACAACCTACAAGGC+TGG 0.504987 5_1:-61245138 None:intergenic
TTGCGTTATCAGAGTCGTAC+TGG 0.505845 5_1:+61244479 Msa0741520:CDS
ACTTGGCATTTGTCAAAAGA+AGG 0.506411 5_1:+61239923 Msa0741520:CDS
TGAAGATACCAGAAGAAACT+TGG 0.508228 5_1:+61239906 Msa0741520:CDS
ATAAATCAAGCAACTCCACT+AGG 0.511786 5_1:-61244794 None:intergenic
CTACAAGGCAGCAGTTGCTC+CGG 0.513300 5_1:+61239142 Msa0741520:CDS
ATCCACAAGACAATATGAAA+AGG 0.514235 5_1:-61239717 None:intergenic
ACAAGCTGACTTGAATATTC+CGG 0.516165 5_1:-61239179 None:intergenic
GGGAATGAACAAAGCTGTGT+TGG 0.521610 5_1:+61245106 Msa0741520:three_prime_UTR
GGAGACAATGTACAACGAAA+TGG 0.522780 5_1:+61244553 Msa0741520:CDS
TGCTTATGAGATTATCAAAG+AGG 0.522837 5_1:+61240000 Msa0741520:CDS
ATATAACATGTCATGATCCT+AGG 0.523148 5_1:+61239399 Msa0741520:CDS
GTTTGATTCTCATCTTTACA+AGG 0.523498 5_1:-61239455 None:intergenic
AAGAGCTCTTCCCACCGAAA+AGG 0.526516 5_1:+61242951 Msa0741520:CDS
TCATCTTTACAAGGCTTAGG+TGG 0.528834 5_1:-61239446 None:intergenic
ACAGCTACAACCAGCGGCGG+CGG 0.529482 5_1:+61242754 Msa0741520:CDS
TCAGGAGTGAGTCTTGGCTC+TGG 0.533602 5_1:+61239215 Msa0741520:CDS
TTTCACCAGTACCAGGTTGT+CGG 0.538716 5_1:+61242928 Msa0741520:CDS
ATAATTGAAAGAGCAGACTT+AGG 0.539836 5_1:-61240226 None:intergenic
CCCGGCTAATCTGTGCAAAA+GGG 0.540578 5_1:+61244631 Msa0741520:CDS
CGAAATGGCATCTCGTCATA+GGG 0.541059 5_1:+61244568 Msa0741520:CDS
CCATAGTTCTTAATCTTGGT+AGG 0.548600 5_1:-61244449 None:intergenic
GAAACAGTTTCACCAGTACC+AGG 0.549157 5_1:+61242921 Msa0741520:intron
TTCCAAAATCAAGTTCCCTC+TGG 0.549470 5_1:+61244676 Msa0741520:CDS
TCTTTGATAATCTCATAAGC+AGG 0.552362 5_1:-61239998 None:intergenic
AAGAAGGTTAAGAAAAGCAA+TGG 0.552641 5_1:+61243188 Msa0741520:CDS
GAAGAAACAACATTGAAACT+TGG 0.552726 5_1:-61238801 None:intergenic
TGTATAAAGTAATTCTCCAC+AGG 0.553052 5_1:-61240163 None:intergenic
TCCTAGTTTGTTATTTACTG+AGG 0.554608 5_1:+61244895 Msa0741520:three_prime_UTR
ACATTGAAACTTGGATGTTG+AGG 0.561784 5_1:-61238792 None:intergenic
ACTGAATCACATAAACAGGT+TGG 0.563649 5_1:-61244759 None:intergenic
GTCTTAATGATCTGGATGCA+AGG 0.568738 5_1:-61244599 None:intergenic
ATCAAAGAATAATGCTTAGG+TGG 0.573931 5_1:-61239269 None:intergenic
GAAGAGCTCTTCCGACAACC+TGG 0.575483 5_1:-61242939 None:intergenic
AACTTCACAGATTGGTTGTG+TGG 0.575534 5_1:-61238939 None:intergenic
TTTGCACAGATTAGCCGGGA+TGG 0.581078 5_1:-61244627 None:intergenic
GGTTTGTTAGGATTAGGAAG+AGG 0.584487 5_1:+61239650 Msa0741520:CDS
ATCTATTATGGTTGATGGTG+AGG 0.585271 5_1:+61239880 Msa0741520:CDS
GCACAGATTAGCCGGGATGG+TGG 0.585618 5_1:-61244624 None:intergenic
TGTTCAAAACAAGCAATGCA+AGG 0.586629 5_1:-61239332 None:intergenic
AGTGAGGAAAGTGATGATCA+AGG 0.587869 5_1:+61238885 Msa0741520:CDS
AAATTCAAAGCAGTCCTACA+AGG 0.588900 5_1:+61239127 Msa0741520:CDS
TTGTCAAAAGAAGGTGGTGG+TGG 0.594995 5_1:+61239932 Msa0741520:CDS
TTATAACATGGCTTAAGAGG+TGG 0.595739 5_1:-61240067 None:intergenic
CATTAAGACAGCCACCATCC+CGG 0.598852 5_1:+61244613 Msa0741520:CDS
AGTGAATCACATTTCCCTAG+TGG 0.598919 5_1:+61244779 Msa0741520:three_prime_UTR
ATGCTCGTACTGAATGAGCT+AGG 0.600329 5_1:+61245073 Msa0741520:three_prime_UTR
TAAATCAAGCAACTCCACTA+GGG 0.601995 5_1:-61244793 None:intergenic
AGAAGATTAGGCCACCAACT+AGG 0.603627 5_1:+61244705 Msa0741520:CDS
TCCTCAGTAAATAACAAACT+AGG 0.604956 5_1:-61244896 None:intergenic
GATGAAACTAATTTACACCT+AGG 0.606771 5_1:-61239416 None:intergenic
AAAATCAGAACTCAAACATG+TGG 0.613211 5_1:+61239571 Msa0741520:CDS
TGGTTATCACAATATGTACA+AGG 0.613559 5_1:+61244499 Msa0741520:CDS
ATGCCTGACACATTATAACA+TGG 0.618070 5_1:-61240079 None:intergenic
GTCAAAATAAACAACCTACA+AGG 0.621628 5_1:-61245142 None:intergenic
GAAGCTTTGGGCAACCAATG+AGG 0.631227 5_1:+61242999 Msa0741520:CDS
CTAATCTTCTTGTACACCAG+AGG 0.631597 5_1:-61244692 None:intergenic
GGAATATTCAAGTCAGCTTG+TGG 0.632218 5_1:+61239181 Msa0741520:CDS
TGGCATTTGTCAAAAGAAGG+TGG 0.633927 5_1:+61239926 Msa0741520:CDS
TAATCTTCTTGTACACCAGA+GGG 0.642722 5_1:-61244691 None:intergenic
GATATGAAGAAATCAAGACT+TGG 0.642755 5_1:+61240286 Msa0741520:CDS
TACTACTCTAAACGGTGCTG+TGG 0.650976 5_1:+61244532 Msa0741520:CDS
CACCGTTTAGAGTAGTATCA+CGG 0.660256 5_1:-61244526 None:intergenic
AAGTGAAATTCAAATTAGGG+TGG 0.665473 5_1:-61239802 None:intergenic
AACTACGATGAAATCAAGTG+AGG 0.677676 5_1:+61238869 Msa0741520:CDS
CTTTAGACAGCTACAACCAG+CGG 0.692631 5_1:+61242748 Msa0741520:intron
CATTTGTCAAAAGAAGGTGG+TGG 0.703652 5_1:+61239929 Msa0741520:CDS
TAGACAGCTACAACCAGCGG+CGG 0.713347 5_1:+61242751 Msa0741520:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTCATATTTTATTTTGAT+AGG - chr5_1:61241767-61241786 None:intergenic 10.0%
!!! ATTCATTTTTTTTTTTTTGA+GGG - chr5_1:61241924-61241943 None:intergenic 10.0%
!!! TATTCATTTTTTTTTTTTTG+AGG - chr5_1:61241925-61241944 None:intergenic 10.0%
!! CATAGAAAATAAATAAGTTT+AGG + chr5_1:61240514-61240533 Msa0741520:intron 15.0%
!! AAAAAATGTACAAAATGAAA+TGG - chr5_1:61240730-61240749 None:intergenic 15.0%
!! ATTTAATCAAAATTCAAAAG+AGG - chr5_1:61240774-61240793 None:intergenic 15.0%
!!! TAGTATATTAGTATATGTTT+TGG - chr5_1:61241131-61241150 None:intergenic 15.0%
!! AAATTAATTAATAGTGTAGT+TGG - chr5_1:61241173-61241192 None:intergenic 15.0%
!!! AAATAACTATATAGTCTTTT+TGG + chr5_1:61241609-61241628 Msa0741520:intron 15.0%
!!! ATAACTATATAGTCTATTTT+TGG + chr5_1:61241639-61241658 Msa0741520:intron 15.0%
!! TATGAAATTATAATAGTAGT+TGG + chr5_1:61241779-61241798 Msa0741520:intron 15.0%
!! ATGAAATTATAATAGTAGTT+GGG + chr5_1:61241780-61241799 Msa0741520:intron 15.0%
!! TTAATCATATTAATTGTTGT+AGG + chr5_1:61243147-61243166 Msa0741520:intron 15.0%
!!! TTTTCAAAGAAGTTTTATTT+TGG + chr5_1:61243857-61243876 Msa0741520:intron 15.0%
!!! TTTCAAAGAAGTTTTATTTT+GGG + chr5_1:61243858-61243877 Msa0741520:intron 15.0%
!!! TAATCAATCACAGATTTTTT+TGG - chr5_1:61239002-61239021 None:intergenic 20.0%
!! AAGAAGTGAAATTCAAATTA+GGG - chr5_1:61239808-61239827 None:intergenic 20.0%
!! AAAGAAGTGAAATTCAAATT+AGG - chr5_1:61239809-61239828 None:intergenic 20.0%
!!! TTGATACATTTTACTATGTT+GGG + chr5_1:61239852-61239871 Msa0741520:CDS 20.0%
!! ATAAAATCTATTATGGTTGA+TGG + chr5_1:61239875-61239894 Msa0741520:CDS 20.0%
!! TATTCTCATAATTGTAAACA+TGG + chr5_1:61240442-61240461 Msa0741520:intron 20.0%
!!! ATTTTTGGTTTTTCATTAGA+TGG + chr5_1:61240480-61240499 Msa0741520:intron 20.0%
!!! TTTCAAGTGATAATAGAATT+AGG + chr5_1:61240544-61240563 Msa0741520:intron 20.0%
!!! AATAGTATAGTTTTGTTTTG+AGG + chr5_1:61240803-61240822 Msa0741520:intron 20.0%
!!! ATAGTATAGTTTTGTTTTGA+GGG + chr5_1:61240804-61240823 Msa0741520:intron 20.0%
!! TTATATTCAAAAAGTTTGAG+TGG - chr5_1:61240899-61240918 None:intergenic 20.0%
!!! TTTGTATGACTTTTATCTTT+TGG + chr5_1:61241089-61241108 Msa0741520:intron 20.0%
!! ATATGCTATTAGTCAAATAA+AGG - chr5_1:61241263-61241282 None:intergenic 20.0%
!! AAATTTGTAAAAACACGTTT+AGG - chr5_1:61241448-61241467 None:intergenic 20.0%
!!! TTTATTTTCAAGAAGTTAAG+TGG + chr5_1:61242319-61242338 Msa0741520:intron 20.0%
!!! AATATGTTTTTCACTTCAAT+TGG + chr5_1:61242578-61242597 Msa0741520:intron 20.0%
!!! ATATGTTTTTCACTTCAATT+GGG + chr5_1:61242579-61242598 Msa0741520:intron 20.0%
!!! TATTTTGAAGATTCCTTTTT+AGG - chr5_1:61242628-61242647 None:intergenic 20.0%
!! AGTTGTTAATTGAAATTTGA+TGG + chr5_1:61243254-61243273 Msa0741520:intron 20.0%
!! TTAATTGAAATTTGATGGAA+GGG + chr5_1:61243259-61243278 Msa0741520:intron 20.0%
!! AAAAAAGAACAGAAAAACAT+AGG - chr5_1:61243885-61243904 None:intergenic 20.0%
!! GATAAAAATTGAACACAAAA+TGG - chr5_1:61244016-61244035 None:intergenic 20.0%
!! ATAAATGACAAAATATGCAA+TGG - chr5_1:61244290-61244309 None:intergenic 20.0%
!! CATTTATTCTAGTAAAAGTA+AGG + chr5_1:61244303-61244322 Msa0741520:intron 20.0%
! TATCACAAGTAGAATCAAAA+AGG - chr5_1:61238691-61238710 None:intergenic 25.0%
! TTCTCAAATTCAGACAAATT+TGG + chr5_1:61238846-61238865 Msa0741520:CDS 25.0%
! AGAATCAAAACACAATTTCA+AGG + chr5_1:61239078-61239097 Msa0741520:CDS 25.0%
! TATTTCATGGATGTGTTTAT+AGG + chr5_1:61239242-61239261 Msa0741520:CDS 25.0%
! AGTATCAAAGAATAATGCTT+AGG - chr5_1:61239275-61239294 None:intergenic 25.0%
! TATTCTTTGATACTTGATAC+TGG + chr5_1:61239281-61239300 Msa0741520:CDS 25.0%
!!! GATTCTTTAGGATCATAATA+TGG - chr5_1:61239365-61239384 None:intergenic 25.0%
! TCAAAAGAACTAGATTCTTT+AGG - chr5_1:61239377-61239396 None:intergenic 25.0%
!! TTGAATTTCACTTCTTTTCT+TGG + chr5_1:61239812-61239831 Msa0741520:CDS 25.0%
!! GTTGATACATTTTACTATGT+TGG + chr5_1:61239851-61239870 Msa0741520:CDS 25.0%
! TGTTGGGATAAAATCTATTA+TGG + chr5_1:61239868-61239887 Msa0741520:CDS 25.0%
! GCTTTCATGAAAAAGATTAA+GGG + chr5_1:61240022-61240041 Msa0741520:CDS 25.0%
! GAAAATAATATCCCAAAATC+AGG - chr5_1:61240121-61240140 None:intergenic 25.0%
!!! TTTGGGATATTATTTTCTGA+TGG + chr5_1:61240124-61240143 Msa0741520:CDS 25.0%
!!! CTGATGTTTAACATTTTTTC+AGG + chr5_1:61240329-61240348 Msa0741520:intron 25.0%
! TGCATCAATGTATTATTCAA+TGG + chr5_1:61240858-61240877 Msa0741520:intron 25.0%
! TACAAAACAAGTAAACATCA+AGG - chr5_1:61241075-61241094 None:intergenic 25.0%
! ATATTCTCAAAGTGAAACAT+GGG - chr5_1:61241356-61241375 None:intergenic 25.0%
! AATATTCTCAAAGTGAAACA+TGG - chr5_1:61241357-61241376 None:intergenic 25.0%
! ATATATGTTCACCTAATTGA+TGG - chr5_1:61241398-61241417 None:intergenic 25.0%
! TATATAGTTCATATTTCGTC+AGG + chr5_1:61241555-61241574 Msa0741520:intron 25.0%
!!! ACTATATAGTCTATTTTTGG+TGG + chr5_1:61241642-61241661 Msa0741520:intron 25.0%
!! CATTTTACTAAAGAATCCTT+AGG + chr5_1:61241825-61241844 Msa0741520:intron 25.0%
!! TATGTTTTTCACTTCAATTG+GGG + chr5_1:61242580-61242599 Msa0741520:intron 25.0%
! ATTGTTGTAGGTATTTCTTA+AGG + chr5_1:61243159-61243178 Msa0741520:intron 25.0%
! GTTAATTGAAATTTGATGGA+AGG + chr5_1:61243258-61243277 Msa0741520:intron 25.0%
! TTGAAAATATATCCATGCAA+AGG + chr5_1:61243565-61243584 Msa0741520:intron 25.0%
! TGAAAATATATCCATGCAAA+GGG + chr5_1:61243566-61243585 Msa0741520:intron 25.0%
! AAAGATAAGTCAATACAAAC+AGG - chr5_1:61243600-61243619 None:intergenic 25.0%
!!! AGCTTTTATGTTACTTCATA+TGG - chr5_1:61243737-61243756 None:intergenic 25.0%
! TCAAAATAAGCCAATTCATT+CGG + chr5_1:61243784-61243803 Msa0741520:intron 25.0%
!! AAACTTCTTTGAAAAAGTGA+CGG - chr5_1:61243852-61243871 None:intergenic 25.0%
!!! GTATTTAACTTTTATAGCAG+CGG - chr5_1:61243994-61244013 None:intergenic 25.0%
!! AAGTAGTTAGTACTTTTGTT+GGG + chr5_1:61244036-61244055 Msa0741520:intron 25.0%
!!! GTTTTGATTTAAGACTGATT+TGG + chr5_1:61244185-61244204 Msa0741520:intron 25.0%
!!! ATTTAAGACTGATTTGGAAA+GGG + chr5_1:61244191-61244210 Msa0741520:intron 25.0%
! TAATAACTAAAGCTAACACA+TGG - chr5_1:61244353-61244372 None:intergenic 25.0%
! AAAGATCTGCAAACAAAAAA+AGG - chr5_1:61244420-61244439 None:intergenic 25.0%
! AATTCCATAGTTCTTAATCT+TGG - chr5_1:61244456-61244475 None:intergenic 25.0%
! AGATTAAGAACTATGGAATT+TGG + chr5_1:61244456-61244475 Msa0741520:CDS 25.0%
ACTATTGTGATTGTGGTTAA+TGG - chr5_1:61238733-61238752 None:intergenic 30.0%
GAAGAAACAACATTGAAACT+TGG - chr5_1:61238804-61238823 None:intergenic 30.0%
TCAAATGAAACTTCACAGAT+TGG - chr5_1:61238950-61238969 None:intergenic 30.0%
ATCAAAGAATAATGCTTAGG+TGG - chr5_1:61239272-61239291 None:intergenic 30.0%
!!! ATTGCTTGTTTTGAACAAAG+TGG + chr5_1:61239338-61239357 Msa0741520:CDS 30.0%
ATATAACATGTCATGATCCT+AGG + chr5_1:61239399-61239418 Msa0741520:CDS 30.0%
GATGAAACTAATTTACACCT+AGG - chr5_1:61239419-61239438 None:intergenic 30.0%
GTTTGATTCTCATCTTTACA+AGG - chr5_1:61239458-61239477 None:intergenic 30.0%
!! AAACTTGTCCTTATTTCTAC+TGG + chr5_1:61239474-61239493 Msa0741520:CDS 30.0%
!! TTGAGTTCTGATTTTCCATT+AGG - chr5_1:61239566-61239585 None:intergenic 30.0%
AAAATCAGAACTCAAACATG+TGG + chr5_1:61239571-61239590 Msa0741520:CDS 30.0%
CATGTGGAAAATGTTATGTT+TGG + chr5_1:61239587-61239606 Msa0741520:CDS 30.0%
GAAAATGTTATGTTTGGTTG+TGG + chr5_1:61239593-61239612 Msa0741520:CDS 30.0%
! TTCCTTTTCATATTGTCTTG+TGG + chr5_1:61239715-61239734 Msa0741520:CDS 30.0%
ATCCACAAGACAATATGAAA+AGG - chr5_1:61239720-61239739 None:intergenic 30.0%
!!! GTTAGTAGCAAGTTGATTTT+TGG + chr5_1:61239758-61239777 Msa0741520:CDS 30.0%
AAGTGAAATTCAAATTAGGG+TGG - chr5_1:61239805-61239824 None:intergenic 30.0%
! AATTTCACTTCTTTTCTTGG+TGG + chr5_1:61239815-61239834 Msa0741520:CDS 30.0%
! TCTTTGATAATCTCATAAGC+AGG - chr5_1:61240001-61240020 None:intergenic 30.0%
TGCTTATGAGATTATCAAAG+AGG + chr5_1:61240000-61240019 Msa0741520:CDS 30.0%
GGCTTTCATGAAAAAGATTA+AGG + chr5_1:61240021-61240040 Msa0741520:CDS 30.0%
ACATTATAACATGGCTTAAG+AGG - chr5_1:61240073-61240092 None:intergenic 30.0%
TGTATAAAGTAATTCTCCAC+AGG - chr5_1:61240166-61240185 None:intergenic 30.0%
ATAGCCAAACAAACAACATT+AGG - chr5_1:61240196-61240215 None:intergenic 30.0%
!! TGTTGTTTGTTTGGCTATTT+TGG + chr5_1:61240198-61240217 Msa0741520:CDS 30.0%
!! GTTGTTTGTTTGGCTATTTT+GGG + chr5_1:61240199-61240218 Msa0741520:CDS 30.0%
!! TTGTTTGTTTGGCTATTTTG+GGG + chr5_1:61240200-61240219 Msa0741520:CDS 30.0%
ATAATTGAAAGAGCAGACTT+AGG - chr5_1:61240229-61240248 None:intergenic 30.0%
AAGTCTGCTCTTTCAATTAT+TGG + chr5_1:61240229-61240248 Msa0741520:CDS 30.0%
AGTCTGCTCTTTCAATTATT+GGG + chr5_1:61240230-61240249 Msa0741520:CDS 30.0%
GATATGAAGAAATCAAGACT+TGG + chr5_1:61240286-61240305 Msa0741520:CDS 30.0%
TAAACATCAGAACACTTCAT+TGG - chr5_1:61240319-61240338 None:intergenic 30.0%
ATACACCTTTCAAATGCATT+TGG - chr5_1:61240416-61240435 None:intergenic 30.0%
TGATAATAGAATTAGGCTTC+AGG + chr5_1:61240551-61240570 Msa0741520:intron 30.0%
! AACTACTGAAAGTCTGAAAT+TGG + chr5_1:61240575-61240594 Msa0741520:intron 30.0%
! ACTACTGAAAGTCTGAAATT+GGG + chr5_1:61240576-61240595 Msa0741520:intron 30.0%
ATACAAAACAAGCTTCTGTT+TGG - chr5_1:61240608-61240627 None:intergenic 30.0%
AATACATTGATGCAACATCT+AGG - chr5_1:61240852-61240871 None:intergenic 30.0%
! TTCAATGGTCTTTTTCTGTT+AGG + chr5_1:61240873-61240892 Msa0741520:intron 30.0%
! ATTTTGCCATCTATGTCTAT+TGG + chr5_1:61241001-61241020 Msa0741520:intron 30.0%
ATCAAGGATTATCACTAATC+AGG - chr5_1:61241059-61241078 None:intergenic 30.0%
! GTATGACTTTTATCTTTTGG+TGG + chr5_1:61241092-61241111 Msa0741520:intron 30.0%
!! ACTTTTATCTTTTGGTGGAT+TGG + chr5_1:61241097-61241116 Msa0741520:intron 30.0%
! AGCTAAGTTTTCCATTCAAT+TGG + chr5_1:61241214-61241233 Msa0741520:intron 30.0%
TTTCAAAGTCCATTCAAACT+TGG + chr5_1:61241296-61241315 Msa0741520:intron 30.0%
TTCAAAGTCCATTCAAACTT+GGG + chr5_1:61241297-61241316 Msa0741520:intron 30.0%
! TAATTGATGGCTTACTTAAC+TGG - chr5_1:61241385-61241404 None:intergenic 30.0%
AGTTAAGTAAGCCATCAATT+AGG + chr5_1:61241384-61241403 Msa0741520:intron 30.0%
GACAATGCATAAAATATGCA+AGG - chr5_1:61241677-61241696 None:intergenic 30.0%
ACAAGACAATTGATCTCATA+AGG - chr5_1:61242256-61242275 None:intergenic 30.0%
ATGTATAAGTGAAGAATCTG+AGG + chr5_1:61242362-61242381 Msa0741520:intron 30.0%
! ATGTTTTTCACTTCAATTGG+GGG + chr5_1:61242581-61242600 Msa0741520:intron 30.0%
ATATCGTGTTTCACTTCAAT+TGG + chr5_1:61242645-61242664 Msa0741520:intron 30.0%
ACAAAAAAATGAAGGAAGGA+AGG - chr5_1:61242864-61242883 None:intergenic 30.0%
ACACACAAAAAAATGAAGGA+AGG - chr5_1:61242868-61242887 None:intergenic 30.0%
ACACACACACAAAAAAATGA+AGG - chr5_1:61242872-61242891 None:intergenic 30.0%
AGCTTCATACGATAAATCTT+AGG - chr5_1:61242985-61243004 None:intergenic 30.0%
AGATTTATCGTATGAAGCTT+TGG + chr5_1:61242986-61243005 Msa0741520:CDS 30.0%
GATTTATCGTATGAAGCTTT+GGG + chr5_1:61242987-61243006 Msa0741520:CDS 30.0%
AACATAGACTTACCAGAATT+TGG - chr5_1:61243037-61243056 None:intergenic 30.0%
TTTCTTAAGGAAGTTGAAGA+AGG + chr5_1:61243172-61243191 Msa0741520:CDS 30.0%
AAGAAGGTTAAGAAAAGCAA+TGG + chr5_1:61243188-61243207 Msa0741520:CDS 30.0%
! CATTAAGTTGTGTAACAAAC+TGG + chr5_1:61243488-61243507 Msa0741520:intron 30.0%
CACCGTAACATTAGATTTAA+GGG - chr5_1:61243514-61243533 None:intergenic 30.0%
TCACCGTAACATTAGATTTA+AGG - chr5_1:61243515-61243534 None:intergenic 30.0%
AATCTAATGTTACGGTGAAA+TGG + chr5_1:61243517-61243536 Msa0741520:intron 30.0%
ATCTAATGTTACGGTGAAAT+GGG + chr5_1:61243518-61243537 Msa0741520:intron 30.0%
TATTATTGATCAGCTTGTCA+AGG + chr5_1:61243663-61243682 Msa0741520:intron 30.0%
CAAAATAAGCCAATTCATTC+GGG + chr5_1:61243785-61243804 Msa0741520:intron 30.0%
TTCACATGAATCACAGTTTA+GGG - chr5_1:61243929-61243948 None:intergenic 30.0%
TTTCACATGAATCACAGTTT+AGG - chr5_1:61243930-61243949 None:intergenic 30.0%
! CAAGTAGTTAGTACTTTTGT+TGG + chr5_1:61244035-61244054 Msa0741520:intron 30.0%
! AGTAGTTAGTACTTTTGTTG+GGG + chr5_1:61244037-61244056 Msa0741520:intron 30.0%
TTCTGTTTGTGATTATTGCT+GGG + chr5_1:61244096-61244115 Msa0741520:intron 30.0%
!! GATTTAAGACTGATTTGGAA+AGG + chr5_1:61244190-61244209 Msa0741520:intron 30.0%
AAAGTAAGGCTAATTGAACT+TGG + chr5_1:61244317-61244336 Msa0741520:intron 30.0%
TAACTTCAATTGCAGTTTGT+TGG + chr5_1:61244376-61244395 Msa0741520:intron 30.0%
TGGTTATCACAATATGTACA+AGG + chr5_1:61244499-61244518 Msa0741520:CDS 30.0%
ATTCACTGAATCACATAAAC+AGG - chr5_1:61244766-61244785 None:intergenic 30.0%
!! TCCTAGTTTGTTATTTACTG+AGG + chr5_1:61244895-61244914 Msa0741520:three_prime_UTR 30.0%
TCCTCAGTAAATAACAAACT+AGG - chr5_1:61244899-61244918 None:intergenic 30.0%
TTGATGTACTGTTATAAGCT+CGG + chr5_1:61244961-61244980 Msa0741520:three_prime_UTR 30.0%
! GATCACTTTGTTTCAAAGTA+GGG + chr5_1:61244997-61245016 Msa0741520:three_prime_UTR 30.0%
TCTTGAGACTATTGTGATTG+TGG - chr5_1:61238740-61238759 None:intergenic 35.0%
CACAATAGTCTCAAGAAGAA+TGG + chr5_1:61238744-61238763 Msa0741520:CDS 35.0%
ACATTGAAACTTGGATGTTG+AGG - chr5_1:61238795-61238814 None:intergenic 35.0%
AACTACGATGAAATCAAGTG+AGG + chr5_1:61238869-61238888 Msa0741520:CDS 35.0%
AAATTCAAAGCAGTCCTACA+AGG + chr5_1:61239127-61239146 Msa0741520:CDS 35.0%
!! ACAAGCTGACTTGAATATTC+CGG - chr5_1:61239182-61239201 None:intergenic 35.0%
! ATACTGGTAGTGATCTCAAT+TGG + chr5_1:61239297-61239316 Msa0741520:CDS 35.0%
TGTTCAAAACAAGCAATGCA+AGG - chr5_1:61239335-61239354 None:intergenic 35.0%
TTCTCATCTTTACAAGGCTT+AGG - chr5_1:61239452-61239471 None:intergenic 35.0%
!! TGTCCTTATTTCTACTGGTA+TGG + chr5_1:61239479-61239498 Msa0741520:CDS 35.0%
TCACCATACCAGTAGAAATA+AGG - chr5_1:61239485-61239504 None:intergenic 35.0%
AGCAAAATCACCAGTTGTAT+TGG - chr5_1:61239513-61239532 None:intergenic 35.0%
! TACAACTGGTGATTTTGCTT+TGG + chr5_1:61239514-61239533 Msa0741520:CDS 35.0%
! TTCTGATTTTCCATTAGGAG+TGG - chr5_1:61239561-61239580 None:intergenic 35.0%
TTATGTTTGGTTGTGGTCAT+TGG + chr5_1:61239600-61239619 Msa0741520:CDS 35.0%
TGGAATAGAGGACTATTTCA+TGG + chr5_1:61239620-61239639 Msa0741520:CDS 35.0%
AGCTGAGAAGCAAATGATAA+TGG - chr5_1:61239677-61239696 None:intergenic 35.0%
TCTCAGCTTCAATCTATCTT+TGG + chr5_1:61239689-61239708 Msa0741520:CDS 35.0%
!!! TAGCAAGTTGATTTTTGGTG+AGG + chr5_1:61239763-61239782 Msa0741520:CDS 35.0%
!! ATCTATTATGGTTGATGGTG+AGG + chr5_1:61239880-61239899 Msa0741520:CDS 35.0%
TGAAGATACCAGAAGAAACT+TGG + chr5_1:61239906-61239925 Msa0741520:CDS 35.0%
ACTTGGCATTTGTCAAAAGA+AGG + chr5_1:61239923-61239942 Msa0741520:CDS 35.0%
!! TAAGGGTTATGAACTTGTTG+AGG + chr5_1:61240039-61240058 Msa0741520:CDS 35.0%
!! AAGGGTTATGAACTTGTTGA+GGG + chr5_1:61240040-61240059 Msa0741520:CDS 35.0%
TTATAACATGGCTTAAGAGG+TGG - chr5_1:61240070-61240089 None:intergenic 35.0%
AAGCCATGTTATAATGTGTC+AGG + chr5_1:61240076-61240095 Msa0741520:CDS 35.0%
ATGCCTGACACATTATAACA+TGG - chr5_1:61240082-61240101 None:intergenic 35.0%
!! TGTGTCAGGCATTGAAAAAA+TGG + chr5_1:61240090-61240109 Msa0741520:CDS 35.0%
! AAAATGGAGCTACCTGATTT+TGG + chr5_1:61240106-61240125 Msa0741520:CDS 35.0%
! AAATGGAGCTACCTGATTTT+GGG + chr5_1:61240107-61240126 Msa0741520:CDS 35.0%
! TATTTTCTGATGGAGCAATG+TGG + chr5_1:61240134-61240153 Msa0741520:CDS 35.0%
! ATTTTCTGATGGAGCAATGT+GGG + chr5_1:61240135-61240154 Msa0741520:CDS 35.0%
! TGAGCCTAATGTTGTTTGTT+TGG + chr5_1:61240189-61240208 Msa0741520:CDS 35.0%
!!! ATTTTTTCAGGCTCGAACTT+TGG + chr5_1:61240341-61240360 Msa0741520:intron 35.0%
ACTGTCCGATTAATATCGAA+CGG + chr5_1:61240364-61240383 Msa0741520:intron 35.0%
TTTGGCCGTTCGATATTAAT+CGG - chr5_1:61240372-61240391 None:intergenic 35.0%
GCAATCCAAATGCATTTGAA+AGG + chr5_1:61240408-61240427 Msa0741520:intron 35.0%
TTGTAAACATGGTGATTCAG+AGG + chr5_1:61240453-61240472 Msa0741520:intron 35.0%
TGTAAACATGGTGATTCAGA+GGG + chr5_1:61240454-61240473 Msa0741520:intron 35.0%
! TGATTCAGAGGGTAGATTTT+TGG + chr5_1:61240465-61240484 Msa0741520:intron 35.0%
AATTCAGTTGACCAATTCCT+TGG - chr5_1:61240959-61240978 None:intergenic 35.0%
GACATAGATGGCAAAATGTA+TGG - chr5_1:61240998-61241017 None:intergenic 35.0%
CATAAGCCAATAGACATAGA+TGG - chr5_1:61241010-61241029 None:intergenic 35.0%
!! CATCTATGTCTATTGGCTTA+TGG + chr5_1:61241008-61241027 Msa0741520:intron 35.0%
TACACACAAGACCAATTGAA+TGG - chr5_1:61241228-61241247 None:intergenic 35.0%
! GTTTGAATGGACTTTGAAAG+AGG - chr5_1:61241295-61241314 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG - chr5_1:61241672-61241691 None:intergenic 35.0%
! TGTAATGAGCATTTTGCCTA+AGG - chr5_1:61241844-61241863 None:intergenic 35.0%
! TGATGACGTTGCAATATGTA+GGG - chr5_1:61242395-61242414 None:intergenic 35.0%
! ATGATGACGTTGCAATATGT+AGG - chr5_1:61242396-61242415 None:intergenic 35.0%
! TTTTATTGGGCCAATCAGTT+CGG - chr5_1:61242672-61242691 None:intergenic 35.0%
! ATGTGATGTGGGCTTTTATT+GGG - chr5_1:61242685-61242704 None:intergenic 35.0%
ATCTGTGTTTGTCGCAAAAA+TGG + chr5_1:61242789-61242808 Msa0741520:CDS 35.0%
GAAGGAAATGAAAGGATTAG+TGG - chr5_1:61242846-61242865 None:intergenic 35.0%
TGTGTGTGTGAATCTTAACA+CGG + chr5_1:61242883-61242902 Msa0741520:intron 35.0%
! CTTAGGATGTTCATCCTTTT+CGG - chr5_1:61242968-61242987 None:intergenic 35.0%
GACTTACCAGAATTTGGATT+TGG - chr5_1:61243031-61243050 None:intergenic 35.0%
! GAAAAGCAATGGACAAGTTT+TGG + chr5_1:61243199-61243218 Msa0741520:CDS 35.0%
!! ACAAGTTTTGGCAATCAATG+AGG + chr5_1:61243211-61243230 Msa0741520:CDS 35.0%
GATTCGTAGAATCACTTCTT+TGG + chr5_1:61243345-61243364 Msa0741520:intron 35.0%
GGCCCTTAAATCTAATGTTA+CGG + chr5_1:61243509-61243528 Msa0741520:intron 35.0%
!! TTTGGTGCGGATTTGATTTT+GGG + chr5_1:61243815-61243834 Msa0741520:intron 35.0%
! TTAGTACTTTTGTTGGGGAA+GGG + chr5_1:61244042-61244061 Msa0741520:intron 35.0%
GTTCTGTTTGTGATTATTGC+TGG + chr5_1:61244095-61244114 Msa0741520:intron 35.0%
!!! AACTTGTTTTGAGAAGTCAC+TGG + chr5_1:61244141-61244160 Msa0741520:intron 35.0%
TCAACTATCAAAGTAGTCAC+TGG - chr5_1:61244230-61244249 None:intergenic 35.0%
CCATAGTTCTTAATCTTGGT+AGG - chr5_1:61244452-61244471 None:intergenic 35.0%
CCTACCAAGATTAAGAACTA+TGG + chr5_1:61244449-61244468 Msa0741520:CDS 35.0%
TACCGTGATACTACTCTAAA+CGG + chr5_1:61244524-61244543 Msa0741520:CDS 35.0%
TAATCTTCTTGTACACCAGA+GGG - chr5_1:61244694-61244713 None:intergenic 35.0%
!!! TGGCTTTGTAGGTTGTTTTT+AGG - chr5_1:61244733-61244752 None:intergenic 35.0%
CTGAATCACATAAACAGGTT+GGG - chr5_1:61244761-61244780 None:intergenic 35.0%
ACTGAATCACATAAACAGGT+TGG - chr5_1:61244762-61244781 None:intergenic 35.0%
TAAATCAAGCAACTCCACTA+GGG - chr5_1:61244796-61244815 None:intergenic 35.0%
ATAAATCAAGCAACTCCACT+AGG - chr5_1:61244797-61244816 None:intergenic 35.0%
AGTGGAGTTGCTTGATTTAT+CGG + chr5_1:61244797-61244816 Msa0741520:three_prime_UTR 35.0%
! CGATCACTTTGTTTCAAAGT+AGG + chr5_1:61244996-61245015 Msa0741520:three_prime_UTR 35.0%
TGCACTAATTGCTGCAAAAA+AGG + chr5_1:61245041-61245060 Msa0741520:three_prime_UTR 35.0%
AAATAAACAACCTACAAGGC+TGG - chr5_1:61245141-61245160 None:intergenic 35.0%
! TGTGATATGCTCTTTTGCTG+TGG + chr5_1:61238704-61238723 Msa0741520:CDS 40.0%
AGTGAGGAAAGTGATGATCA+AGG + chr5_1:61238885-61238904 Msa0741520:CDS 40.0%
! AACTTCACAGATTGGTTGTG+TGG - chr5_1:61238942-61238961 None:intergenic 40.0%
GGAATATTCAAGTCAGCTTG+TGG + chr5_1:61239181-61239200 Msa0741520:CDS 40.0%
TCATCTTTACAAGGCTTAGG+TGG - chr5_1:61239449-61239468 None:intergenic 40.0%
GGTGATAGTTCCAATACAAC+TGG + chr5_1:61239500-61239519 Msa0741520:CDS 40.0%
GTTAATCTCACCACTCCTAA+TGG + chr5_1:61239548-61239567 Msa0741520:CDS 40.0%
!! GGTTTGTTAGGATTAGGAAG+AGG + chr5_1:61239650-61239669 Msa0741520:CDS 40.0%
GACAAATGCCAAGTTTCTTC+TGG - chr5_1:61239917-61239936 None:intergenic 40.0%
TGGCATTTGTCAAAAGAAGG+TGG + chr5_1:61239926-61239945 Msa0741520:CDS 40.0%
CATTTGTCAAAAGAAGGTGG+TGG + chr5_1:61239929-61239948 Msa0741520:CDS 40.0%
! GGTGGTGCAATAATTGATTC+TGG + chr5_1:61239950-61239969 Msa0741520:CDS 40.0%
GCATTTGGATTGCATGTAGT+CGG - chr5_1:61240401-61240420 None:intergenic 40.0%
!! TTGGTCTTGTGTGTATAAGC+TGG + chr5_1:61241233-61241252 Msa0741520:intron 40.0%
TCATCATGCCCAAGTTTGAA+TGG - chr5_1:61241308-61241327 None:intergenic 40.0%
ACACGTTTAGGAGTAACACA+TGG - chr5_1:61241436-61241455 None:intergenic 40.0%
CATAAAATATGCAAGGTCCG+GGG - chr5_1:61241670-61241689 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG - chr5_1:61241671-61241690 None:intergenic 40.0%
TGAGCTTAGCTCAATTGGTA+TGG - chr5_1:61241699-61241718 None:intergenic 40.0%
ACGTGGAGCTAATTCATTCT+TGG - chr5_1:61242156-61242175 None:intergenic 40.0%
AACCAGCAACCTATCTAATG+AGG - chr5_1:61242228-61242247 None:intergenic 40.0%
GATGACGTTGCAATATGTAG+GGG - chr5_1:61242394-61242413 None:intergenic 40.0%
GGGGCCTAAAAAGATATACA+GGG + chr5_1:61242600-61242619 Msa0741520:intron 40.0%
GGGCCTAAAAAGATATACAG+GGG + chr5_1:61242601-61242620 Msa0741520:intron 40.0%
GGCCTAAAAAGATATACAGG+GGG + chr5_1:61242602-61242621 Msa0741520:intron 40.0%
! GATGTGATGTGGGCTTTTAT+TGG - chr5_1:61242686-61242705 None:intergenic 40.0%
ATAAAAGCCCACATCACATC+AGG + chr5_1:61242686-61242705 Msa0741520:intron 40.0%
TAAAAGCCCACATCACATCA+GGG + chr5_1:61242687-61242706 Msa0741520:intron 40.0%
GTAAAACCCTGATGTGATGT+GGG - chr5_1:61242696-61242715 None:intergenic 40.0%
CGCAAAAATGGTTAACGCTA+AGG + chr5_1:61242801-61242820 Msa0741520:CDS 40.0%
! AAAGGATTAGTGGTAGTGCT+TGG - chr5_1:61242836-61242855 None:intergenic 40.0%
GAAGGAAGGAAGGAAATGAA+AGG - chr5_1:61242854-61242873 None:intergenic 40.0%
TTCGTGCCAAATCCAAATTC+TGG + chr5_1:61243022-61243041 Msa0741520:CDS 40.0%
TCAAATCCGCACCAAACATA+GGG - chr5_1:61243811-61243830 None:intergenic 40.0%
ATCAAATCCGCACCAAACAT+AGG - chr5_1:61243812-61243831 None:intergenic 40.0%
!!! GTTTGGTGCGGATTTGATTT+TGG + chr5_1:61243814-61243833 Msa0741520:intron 40.0%
! GTTAGTACTTTTGTTGGGGA+AGG + chr5_1:61244041-61244060 Msa0741520:intron 40.0%
GAACAAGCTCTACTTGCAAT+CGG - chr5_1:61244079-61244098 None:intergenic 40.0%
AGGCTAATTGAACTTGGAGT+AGG + chr5_1:61244323-61244342 Msa0741520:intron 40.0%
!! TTGCAGTTTGTTGGACATAG+AGG + chr5_1:61244385-61244404 Msa0741520:intron 40.0%
! CACCGTTTAGAGTAGTATCA+CGG - chr5_1:61244529-61244548 None:intergenic 40.0%
GGAGACAATGTACAACGAAA+TGG + chr5_1:61244553-61244572 Msa0741520:CDS 40.0%
GTCTTAATGATCTGGATGCA+AGG - chr5_1:61244602-61244621 None:intergenic 40.0%
TTCCAAAATCAAGTTCCCTC+TGG + chr5_1:61244676-61244695 Msa0741520:CDS 40.0%
CTAATCTTCTTGTACACCAG+AGG - chr5_1:61244695-61244714 None:intergenic 40.0%
CTCTGGTGTACAAGAAGATT+AGG + chr5_1:61244693-61244712 Msa0741520:CDS 40.0%
!!! GTTGTTTTTAGGCTCCTAGT+TGG - chr5_1:61244722-61244741 None:intergenic 40.0%
AGTGAATCACATTTCCCTAG+TGG + chr5_1:61244779-61244798 Msa0741520:three_prime_UTR 40.0%
! AATGAGCTAGGTTTTGCGAT+AGG + chr5_1:61245085-61245104 Msa0741520:three_prime_UTR 40.0%
! ATGAGCTAGGTTTTGCGATA+GGG + chr5_1:61245086-61245105 Msa0741520:three_prime_UTR 40.0%
AAGTCAGCTTGTGGCAACTT+TGG + chr5_1:61239190-61239209 Msa0741520:CDS 45.0%
!! CTTGTGGCAACTTTGGAATC+AGG + chr5_1:61239197-61239216 Msa0741520:CDS 45.0%
TTGGAATCAGGAGTGAGTCT+TGG + chr5_1:61239209-61239228 Msa0741520:CDS 45.0%
!! TGGCTCTGGTGAGTATTTCA+TGG + chr5_1:61239229-61239248 Msa0741520:CDS 45.0%
TTACAAGGCTTAGGTGGATC+TGG - chr5_1:61239443-61239462 None:intergenic 45.0%
GGTTGTGGTCATTGGAATAG+AGG + chr5_1:61239608-61239627 Msa0741520:CDS 45.0%
!! GCTGCTGGTTTGTTAGGATT+AGG + chr5_1:61239644-61239663 Msa0741520:CDS 45.0%
! TTGTCAAAAGAAGGTGGTGG+TGG + chr5_1:61239932-61239951 Msa0741520:CDS 45.0%
! AGCAATGTGGGATTTTCCTG+TGG + chr5_1:61240147-61240166 Msa0741520:CDS 45.0%
GTAACAAATGCATGCCACCA+AGG + chr5_1:61240939-61240958 Msa0741520:intron 45.0%
AATGCATGCCACCAAGGAAT+TGG + chr5_1:61240945-61240964 Msa0741520:intron 45.0%
TCAGTTGACCAATTCCTTGG+TGG - chr5_1:61240956-61240975 None:intergenic 45.0%
!!! GTCTATTTTTGGTGGTACCC+CGG + chr5_1:61241650-61241669 Msa0741520:intron 45.0%
TACGAGCTTCTTGTCTCTCA+CGG + chr5_1:61242040-61242059 Msa0741520:intron 45.0%
TTGTCTCTCACGGAAGACTA+TGG + chr5_1:61242050-61242069 Msa0741520:intron 45.0%
TCACGGAAGACTATGGTGTT+GGG + chr5_1:61242057-61242076 Msa0741520:intron 45.0%
! GATATCCCCTTGTGAGTTGA+AGG - chr5_1:61242179-61242198 None:intergenic 45.0%
TCACAAGGGGATATCAAGCA+AGG + chr5_1:61242184-61242203 Msa0741520:intron 45.0%
CACAAGGGGATATCAAGCAA+GGG + chr5_1:61242185-61242204 Msa0741520:intron 45.0%
ACAAGGGGATATCAAGCAAG+GGG + chr5_1:61242186-61242205 Msa0741520:intron 45.0%
TGTGAGGAGCCTCATTAGAT+AGG + chr5_1:61242216-61242235 Msa0741520:intron 45.0%
AGCCTCATTAGATAGGTTGC+TGG + chr5_1:61242223-61242242 Msa0741520:intron 45.0%
GGGGGCCTAAAAAGATATAC+AGG + chr5_1:61242599-61242618 Msa0741520:intron 45.0%
! GGCCCCCTGTATATCTTTTT+AGG - chr5_1:61242607-61242626 None:intergenic 45.0%
GATATACAGGGGGCCTAAAA+AGG + chr5_1:61242612-61242631 Msa0741520:intron 45.0%
CGTAAAACCCTGATGTGATG+TGG - chr5_1:61242697-61242716 None:intergenic 45.0%
AGCTGTCTAAAGGGTGAATG+AGG - chr5_1:61242740-61242759 None:intergenic 45.0%
GCTGGTTGTAGCTGTCTAAA+GGG - chr5_1:61242749-61242768 None:intergenic 45.0%
CTTTAGACAGCTACAACCAG+CGG + chr5_1:61242748-61242767 Msa0741520:intron 45.0%
GAAACAGTTTCACCAGTACC+AGG + chr5_1:61242921-61242940 Msa0741520:intron 45.0%
TTTCACCAGTACCAGGTTGT+CGG + chr5_1:61242928-61242947 Msa0741520:CDS 45.0%
! GGATGTTCATCCTTTTCGGT+GGG - chr5_1:61242964-61242983 None:intergenic 45.0%
! AGGATGTTCATCCTTTTCGG+TGG - chr5_1:61242965-61242984 None:intergenic 45.0%
TATCCATGCAAAGGGAGACT+TGG + chr5_1:61243574-61243593 Msa0741520:intron 45.0%
AACATAGGGCCCGAATGAAT+TGG - chr5_1:61243797-61243816 None:intergenic 45.0%
ATTCATTCGGGCCCTATGTT+TGG + chr5_1:61243797-61243816 Msa0741520:intron 45.0%
! TACTTTTGTTGGGGAAGGGA+AGG + chr5_1:61244046-61244065 Msa0741520:intron 45.0%
TTGCGTTATCAGAGTCGTAC+TGG + chr5_1:61244479-61244498 Msa0741520:CDS 45.0%
! TACTACTCTAAACGGTGCTG+TGG + chr5_1:61244532-61244551 Msa0741520:CDS 45.0%
ACGAAATGGCATCTCGTCAT+AGG + chr5_1:61244567-61244586 Msa0741520:CDS 45.0%
CGAAATGGCATCTCGTCATA+GGG + chr5_1:61244568-61244587 Msa0741520:CDS 45.0%
TGGTGGCTGTCTTAATGATC+TGG - chr5_1:61244610-61244629 None:intergenic 45.0%
! TCCCTTTTGCACAGATTAGC+CGG - chr5_1:61244635-61244654 None:intergenic 45.0%
! CACCAGAGGGAACTTGATTT+TGG - chr5_1:61244681-61244700 None:intergenic 45.0%
AGAAGATTAGGCCACCAACT+AGG + chr5_1:61244705-61244724 Msa0741520:CDS 45.0%
!! GTTTTTAGGCTCCTAGTTGG+TGG - chr5_1:61244719-61244738 None:intergenic 45.0%
! CATAAACAGGTTGGGCTTCT+TGG - chr5_1:61244753-61244772 None:intergenic 45.0%
ATGCTCGTACTGAATGAGCT+AGG + chr5_1:61245073-61245092 Msa0741520:three_prime_UTR 45.0%
GGGAATGAACAAAGCTGTGT+TGG + chr5_1:61245106-61245125 Msa0741520:three_prime_UTR 45.0%
! GTAATTGTGTCCAGCCTTGT+AGG + chr5_1:61245128-61245147 Msa0741520:three_prime_UTR 45.0%
!! GGACTATTTCATGGTGCTGC+TGG + chr5_1:61239629-61239648 Msa0741520:CDS 50.0%
!! CATGGTGCTGCTGGTTTGTT+AGG + chr5_1:61239638-61239657 Msa0741520:CDS 50.0%
GCATGTAGTCGGCACATCTT+TGG - chr5_1:61240390-61240409 None:intergenic 50.0%
CGTCGTGAGCTTAGCTCAAT+TGG - chr5_1:61241704-61241723 None:intergenic 50.0%
ATTGAGCTAAGCTCACGACG+AGG + chr5_1:61241704-61241723 Msa0741520:intron 50.0%
CTCACGGAAGACTATGGTGT+TGG + chr5_1:61242056-61242075 Msa0741520:intron 50.0%
! CACGGAAGACTATGGTGTTG+GGG + chr5_1:61242058-61242077 Msa0741520:intron 50.0%
TCCACGTCCTTCAACTCACA+AGG + chr5_1:61242169-61242188 Msa0741520:intron 50.0%
CCACGTCCTTCAACTCACAA+GGG + chr5_1:61242170-61242189 Msa0741520:intron 50.0%
CACGTCCTTCAACTCACAAG+GGG + chr5_1:61242171-61242190 Msa0741520:intron 50.0%
AGCAAGGGGTTCACTTTGTG+AGG + chr5_1:61242200-61242219 Msa0741520:intron 50.0%
! CGCTGGTTGTAGCTGTCTAA+AGG - chr5_1:61242750-61242769 None:intergenic 50.0%
AAGAGCTCTTCCCACCGAAA+AGG + chr5_1:61242951-61242970 Msa0741520:CDS 50.0%
!! GAAGCTTTGGGCAACCAATG+AGG + chr5_1:61242999-61243018 Msa0741520:CDS 50.0%
GGATTTGGCACGAACCTCAT+TGG - chr5_1:61243016-61243035 None:intergenic 50.0%
CAAGCTCTACTTGCAATCGG+AGG - chr5_1:61244076-61244095 None:intergenic 50.0%
CATTAAGACAGCCACCATCC+CGG + chr5_1:61244613-61244632 Msa0741520:CDS 50.0%
! TTTGCACAGATTAGCCGGGA+TGG - chr5_1:61244630-61244649 None:intergenic 50.0%
TCCCGGCTAATCTGTGCAAA+AGG + chr5_1:61244630-61244649 Msa0741520:CDS 50.0%
!! CCCTTTTGCACAGATTAGCC+GGG - chr5_1:61244634-61244653 None:intergenic 50.0%
CCCGGCTAATCTGTGCAAAA+GGG + chr5_1:61244631-61244650 Msa0741520:CDS 50.0%
!! GTTGGGCTTCTTGGCTTTGT+AGG - chr5_1:61244744-61244763 None:intergenic 50.0%
GCTCATTCAGTACGAGCATC+TGG - chr5_1:61245072-61245091 None:intergenic 50.0%
CTACAAGGCAGCAGTTGCTC+CGG + chr5_1:61239142-61239161 Msa0741520:CDS 55.0%
TCAGGAGTGAGTCTTGGCTC+TGG + chr5_1:61239215-61239234 Msa0741520:CDS 55.0%
! CCCTTGTGAGTTGAAGGACG+TGG - chr5_1:61242173-61242192 None:intergenic 55.0%
TAGACAGCTACAACCAGCGG+CGG + chr5_1:61242751-61242770 Msa0741520:intron 55.0%
CTCTTCCGACAACCTGGTAC+TGG - chr5_1:61242936-61242955 None:intergenic 55.0%
GAAGAGCTCTTCCGACAACC+TGG - chr5_1:61242942-61242961 None:intergenic 55.0%
AGGCCAAGTCTCCCTTTGCA+TGG - chr5_1:61243580-61243599 None:intergenic 55.0%
! TTCGGGCCCTATGTTTGGTG+CGG + chr5_1:61243802-61243821 Msa0741520:intron 55.0%
TGGCATCTCGTCATAGGGTC+AGG + chr5_1:61244573-61244592 Msa0741520:CDS 55.0%
CGGAGCAACTGCTGCCTTGT+AGG - chr5_1:61239144-61239163 None:intergenic 60.0%
! GCACAGATTAGCCGGGATGG+TGG - chr5_1:61244627-61244646 None:intergenic 60.0%
GGCAGCAGTTGCTCCGGTTG+CGG + chr5_1:61239148-61239167 Msa0741520:CDS 65.0%
TCCGGTTGCGGCAGCTTCAC+CGG + chr5_1:61239160-61239179 Msa0741520:CDS 65.0%
TCCGGTGAAGCTGCCGCAAC+CGG - chr5_1:61239164-61239183 None:intergenic 65.0%
ACAGCTACAACCAGCGGCGG+CGG + chr5_1:61242754-61242773 Msa0741520:CDS 65.0%
AGATTGAGAACCGCCGCCGC+TGG - chr5_1:61242767-61242786 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 61238669 61245162 61238669 ID=Msa0741520;Name=Msa0741520
chr5_1 mRNA 61238669 61245162 61238669 ID=Msa0741520-mRNA-1;Parent=Msa0741520;Name=Msa0741520-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.75|0.6|1|1|1|5|387|751
chr5_1 exon 61238669 61240333 61238669 ID=Msa0741520-mRNA-1:exon:17694;Parent=Msa0741520-mRNA-1
chr5_1 exon 61242754 61242822 61242754 ID=Msa0741520-mRNA-1:exon:17695;Parent=Msa0741520-mRNA-1
chr5_1 exon 61242928 61243043 61242928 ID=Msa0741520-mRNA-1:exon:17696;Parent=Msa0741520-mRNA-1
chr5_1 exon 61243169 61243232 61243169 ID=Msa0741520-mRNA-1:exon:17697;Parent=Msa0741520-mRNA-1
chr5_1 exon 61244434 61245162 61244434 ID=Msa0741520-mRNA-1:exon:17698;Parent=Msa0741520-mRNA-1
chr5_1 CDS 61238669 61240333 61238669 ID=Msa0741520-mRNA-1:cds;Parent=Msa0741520-mRNA-1
chr5_1 CDS 61242754 61242822 61242754 ID=Msa0741520-mRNA-1:cds;Parent=Msa0741520-mRNA-1
chr5_1 CDS 61242928 61243043 61242928 ID=Msa0741520-mRNA-1:cds;Parent=Msa0741520-mRNA-1
chr5_1 CDS 61243169 61243232 61243169 ID=Msa0741520-mRNA-1:cds;Parent=Msa0741520-mRNA-1
chr5_1 CDS 61244434 61244775 61244434 ID=Msa0741520-mRNA-1:cds;Parent=Msa0741520-mRNA-1
chr5_1 three_prime_UTR 61244776 61245162 61244776 ID=Msa0741520-mRNA-1:three_prime_utr;Parent=Msa0741520-mRNA-1
Gene Sequence

>Msa0741520

ATGGTTTTGAAGGTTTTTTCCTTTTTGATTCTACTTGTGATATGCTCTTTTGCTGTGGAAGCCATTAACCACAATCACAATAGTCTCAAGAAGAATGGATCTTCTCTTGCTGCAATAAAGTTTCCTCAACATCCAAGTTTCAATGTTGTTTCTTCTTCTGAAGACACTGATTGTAGTTTCTCAAATTCAGACAAATTTGGAACTACGATGAAATCAAGTGAGGAAAGTGATGATCAAGGTGAAAAAACTGAAGCTTTTATAGCTGAAAATCCACACAACCAATCTGTGAAGTTTCATTTGAAACACATCTCAATGAAGAATGAAATTGAGCCAAAAAAATCTGTGATTGATTACACAATAAGAGATTTAACAAGAATTCAAACTCTTCATACAAGAGTCATTGAAAAGAAGAATCAAAACACAATTTCAAGGCTGCAAAAATCAACAAAGAAACAATCAAATTCAAAGCAGTCCTACAAGGCAGCAGTTGCTCCGGTTGCGGCAGCTTCACCGGAATATTCAAGTCAGCTTGTGGCAACTTTGGAATCAGGAGTGAGTCTTGGCTCTGGTGAGTATTTCATGGATGTGTTTATAGGTACACCACCTAAGCATTATTCTTTGATACTTGATACTGGTAGTGATCTCAATTGGATTCAATGTGTTCCTTGCATTGCTTGTTTTGAACAAAGTGGTCCATATTATGATCCTAAAGAATCTAGTTCTTTTGAGAATATAACATGTCATGATCCTAGGTGTAAATTAGTTTCATCACCAGATCCACCTAAGCCTTGTAAAGATGAGAATCAAACTTGTCCTTATTTCTACTGGTATGGTGATAGTTCCAATACAACTGGTGATTTTGCTTTGGAAACTTTTACTGTTAATCTCACCACTCCTAATGGAAAATCAGAACTCAAACATGTGGAAAATGTTATGTTTGGTTGTGGTCATTGGAATAGAGGACTATTTCATGGTGCTGCTGGTTTGTTAGGATTAGGAAGAGGACCATTATCATTTGCTTCTCAGCTTCAATCTATCTTTGGTCATTCCTTTTCATATTGTCTTGTGGATAGAAATAGTGACACAAGTGTTAGTAGCAAGTTGATTTTTGGTGAGGATAAAGAACTTCTTAGCCACCCTAATTTGAATTTCACTTCTTTTCTTGGTGGTGAAGAGAATTCTGTTGATACATTTTACTATGTTGGGATAAAATCTATTATGGTTGATGGTGAGGTGTTGAAGATACCAGAAGAAACTTGGCATTTGTCAAAAGAAGGTGGTGGTGGTGCAATAATTGATTCTGGAACAACTTTAACTTATTTTGCTGAACCTGCTTATGAGATTATCAAAGAGGCTTTCATGAAAAAGATTAAGGGTTATGAACTTGTTGAGGGCTTTCCACCTCTTAAGCCATGTTATAATGTGTCAGGCATTGAAAAAATGGAGCTACCTGATTTTGGGATATTATTTTCTGATGGAGCAATGTGGGATTTTCCTGTGGAGAATTACTTTATACAGATTGAGCCTAATGTTGTTTGTTTGGCTATTTTGGGGACTCCTAAGTCTGCTCTTTCAATTATTGGGAACTATCAGCAGCAGAATTTTCATATACTTTATGATATGAAGAAATCAAGACTTGGTTATGCACCAATGAAGTGTTCTGATACAGCTACAACCAGCGGCGGCGGTTCTCAATCTGAATCTGTGTTTGTCGCAAAAATGGTTAACGCTAAGTTTCACCAGTACCAGGTTGTCGGAAGAGCTCTTCCCACCGAAAAGGATGAACATCCTAAGATTTATCGTATGAAGCTTTGGGCAACCAATGAGGTTCGTGCCAAATCCAAATTCTGGTATTTCTTAAGGAAGTTGAAGAAGGTTAAGAAAAGCAATGGACAAGTTTTGGCAATCAATGAGATCTTTGAGAAAAATCCTACCAAGATTAAGAACTATGGAATTTGGTTGCGTTATCAGAGTCGTACTGGTTATCACAATATGTACAAGGAATACCGTGATACTACTCTAAACGGTGCTGTGGAGACAATGTACAACGAAATGGCATCTCGTCATAGGGTCAGGTTTCCTTGCATCCAGATCATTAAGACAGCCACCATCCCGGCTAATCTGTGCAAAAGGGAGAGCACTAAGCAGTTTCACAATTCCAAAATCAAGTTCCCTCTGGTGTACAAGAAGATTAGGCCACCAACTAGGAGCCTAAAAACAACCTACAAAGCCAAGAAGCCCAACCTGTTTATGTGA
Protein sequence

>Msa0741520

MVLKVFSFLILLVICSFAVEAINHNHNSLKKNGSSLAAIKFPQHPSFNVVSSSEDTDCSFSNSDKFGTTMKSSEESDDQGEKTEAFIAENPHNQSVKFHLKHISMKNEIEPKKSVIDYTIRDLTRIQTLHTRVIEKKNQNTISRLQKSTKKQSNSKQSYKAAVAPVAAASPEYSSQLVATLESGVSLGSGEYFMDVFIGTPPKHYSLILDTGSDLNWIQCVPCIACFEQSGPYYDPKESSSFENITCHDPRCKLVSSPDPPKPCKDENQTCPYFYWYGDSSNTTGDFALETFTVNLTTPNGKSELKHVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFASQLQSIFGHSFSYCLVDRNSDTSVSSKLIFGEDKELLSHPNLNFTSFLGGEENSVDTFYYVGIKSIMVDGEVLKIPEETWHLSKEGGGGAIIDSGTTLTYFAEPAYEIIKEAFMKKIKGYELVEGFPPLKPCYNVSGIEKMELPDFGILFSDGAMWDFPVENYFIQIEPNVVCLAILGTPKSALSIIGNYQQQNFHILYDMKKSRLGYAPMKCSDTATTSGGGSQSESVFVAKMVNAKFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVETMYNEMASRHRVRFPCIQIIKTATIPANLCKRESTKQFHNSKIKFPLVYKKIRPPTRSLKTTYKAKKPNLFM*