AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0385930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385930 MtrunA17_Chr3g0143911 99.797 492 1 0 1 492 1 492 0.0 1028
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385930 AT4G35090.1 87.398 492 62 0 1 492 1 492 0.0 920
Msa0385930 AT4G35090.3 87.090 488 63 0 5 492 5 492 0.0 910
Msa0385930 AT1G20630.1 85.569 492 71 0 1 492 1 492 0.0 895
Msa0385930 AT4G35090.2 87.553 474 59 0 1 474 1 474 0.0 889
Msa0385930 AT1G20620.1 78.455 492 106 0 1 492 1 492 0.0 843
Msa0385930 AT1G20620.6 78.234 487 106 0 6 492 65 551 0.0 833
Msa0385930 AT1G20620.5 77.033 492 106 1 1 492 1 485 0.0 822
Msa0385930 AT1G20620.2 78.282 419 91 0 1 419 1 419 0.0 715
Msa0385930 AT1G20620.4 76.393 377 89 0 116 492 1 377 0.0 637
Msa0385930 AT1G20620.7 77.818 275 61 0 116 390 1 275 7.34e-167 473

Find 188 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAGGGTCTCTCAAGGTTTC+AGG 0.120854 3_1:-89661502 None:intergenic
GAGAACATGTGAAGGCTTTC+TGG 0.167930 3_1:-89662249 None:intergenic
AACATGAGGCCTAGCATTTA+AGG 0.173184 3_1:+89663973 Msa0385930:CDS
GCGCTTACAATTCTCCTTTC+TGG 0.174679 3_1:+89660170 Msa0385930:CDS
ACTACGTCTGACATTATATT+AGG 0.208614 3_1:+89664315 Msa0385930:three_prime_UTR
ACTTATCAATGCAATCAATT+TGG 0.222368 3_1:-89664266 None:intergenic
GGATCCGTTCCCTATCAAAT+TGG 0.267128 3_1:-89661321 None:intergenic
GTTGGATCCTCCCACCTTAA+TGG 0.271983 3_1:-89662430 None:intergenic
CTTTCCCAGCCTTGTTGATC+AGG 0.273529 3_1:-89662344 None:intergenic
TGTTTGTTTGGATAATTTAA+AGG 0.280785 3_1:+89664056 Msa0385930:three_prime_UTR
TATAGGCACATGGATGGTTT+TGG 0.286155 3_1:+89662306 Msa0385930:CDS
ATTCTCCTGGATGTGGGACT+TGG 0.295541 3_1:-89662196 None:intergenic
CTGGCATGGACAACACGTTC+TGG 0.317458 3_1:-89661343 None:intergenic
TGGATGTGGGACTTGGGGTT+GGG 0.323157 3_1:-89662189 None:intergenic
TTAAGAGCATGGACCATATC+TGG 0.327136 3_1:-89662165 None:intergenic
TTCTCCTGGATGTGGGACTT+GGG 0.330541 3_1:-89662195 None:intergenic
CTGGATGTGGGACTTGGGGT+TGG 0.333029 3_1:-89662190 None:intergenic
GCAGGAAGTTGCAGATAGTT+TGG 0.333290 3_1:-89662783 None:intergenic
TGCTTGAAGTTGTTCTGCTT+TGG 0.342575 3_1:-89663586 None:intergenic
CTCCTTCCTGTTTGATGATG+TGG 0.344839 3_1:+89662269 Msa0385930:CDS
CAGGGTAACTTTGACCTTGT+TGG 0.356144 3_1:+89662099 Msa0385930:intron
CCTTTCTGGACTACAAATTC+CGG 0.359209 3_1:+89660184 Msa0385930:CDS
TTCATTAATTTCTACCTCTC+TGG 0.360898 3_1:-89661548 None:intergenic
TATGATAAAGGATGTTTGTT+TGG 0.363957 3_1:+89664044 Msa0385930:three_prime_UTR
CCCATGAAATCCGCAGCATC+TGG 0.368012 3_1:+89663785 Msa0385930:CDS
CAAATTCCGGTGCACCTGTT+TGG 0.371503 3_1:+89660197 Msa0385930:CDS
ACCCTTTGCACTTGCTCCCC+TGG 0.372101 3_1:-89661362 None:intergenic
CTGGAGAGCGATACCGATCT+TGG 0.372596 3_1:+89663611 Msa0385930:CDS
AAAAGCTTGCCCAATTTGAT+AGG 0.374612 3_1:+89661311 Msa0385930:CDS
AGTCCCACATCCAGGAGAAT+TGG 0.375895 3_1:+89662199 Msa0385930:CDS
CTGTCTTCTTCGTTCATGAC+GGG 0.379692 3_1:+89662133 Msa0385930:CDS
TGATAATCTTCCAAGAGAAT+TGG 0.382249 3_1:-89661280 None:intergenic
TTTGGCAGGTCCAATTCTCT+TGG 0.391620 3_1:+89661270 Msa0385930:intron
TCCAGATGCTGCGGATTTCA+TGG 0.392167 3_1:-89663786 None:intergenic
GTTGGAGGAAGAGGCCATTA+AGG 0.394703 3_1:+89662416 Msa0385930:CDS
TCAAATTTGTCTTCGTGAGC+AGG 0.405045 3_1:-89662537 None:intergenic
TTGCACTTGCTCCCCTGGCA+TGG 0.415695 3_1:-89661357 None:intergenic
TCCTTCCTGTTTGATGATGT+GGG 0.418017 3_1:+89662270 Msa0385930:CDS
GATGAGTTGTTGTTCCAAAC+AGG 0.420786 3_1:-89660211 None:intergenic
TGGGTGTCCCACAAGATTAT+AGG 0.422410 3_1:+89662289 Msa0385930:CDS
CCTTCAGCCCGTAGGTCGCC+TGG 0.422999 3_1:+89662608 Msa0385930:CDS
AATTTCAACATCTGCAACTC+TGG 0.423648 3_1:-89664020 None:intergenic
TGTCCTGCCATTATTGTGCC+TGG 0.427513 3_1:+89662684 Msa0385930:CDS
CTACGTCTGACATTATATTA+GGG 0.429863 3_1:+89664316 Msa0385930:three_prime_UTR
CCTGTCTTCTTCGTTCATGA+CGG 0.433221 3_1:+89662132 Msa0385930:CDS
ATTGTTGTGGTGAGCACACT+TGG 0.434174 3_1:-89662814 None:intergenic
GCAGATTTCCTACGAGCTCC+TGG 0.438797 3_1:+89661424 Msa0385930:CDS
AGGTCAATTACTTCCCTTCA+AGG 0.445115 3_1:+89663029 Msa0385930:intron
CTTGGAAGATTATCATCTTG+TGG 0.451741 3_1:+89661288 Msa0385930:CDS
ACCTCTAGATCCAACGGTTA+GGG 0.454007 3_1:-89660233 None:intergenic
GTTGGTAATGGTAGAGAGAA+AGG 0.456681 3_1:-89659944 None:intergenic
ATATACACCAGGCACAATAA+TGG 0.457625 3_1:-89662691 None:intergenic
ATGCAGGCTGATCGTTCTCT+TGG 0.464966 3_1:+89663928 Msa0385930:intron
TTCTCCAATTCTCCTGGATG+TGG 0.467363 3_1:-89662203 None:intergenic
CAAGGATTCTCCAATTCTCC+TGG 0.469085 3_1:-89662209 None:intergenic
CCATGTGCCTATAATCTTGT+GGG 0.470182 3_1:-89662296 None:intergenic
GAGGGTCTCTCAAGGTTTCA+GGG 0.471242 3_1:-89661501 None:intergenic
TTTCTCTGCATGCCGTGAAA+AGG 0.473118 3_1:+89663099 Msa0385930:CDS
TACCTCTAGATCCAACGGTT+AGG 0.473805 3_1:-89660234 None:intergenic
AAGATAGATTTCTCCGCAGA+TGG 0.473911 3_1:+89663734 Msa0385930:CDS
CAAGATCGGTATCGCTCTCC+AGG 0.473917 3_1:-89663610 None:intergenic
CTGGATCTCATACTGGTCTC+AGG 0.475961 3_1:+89663804 Msa0385930:CDS
GTTTCATGAATTTCATTCAC+AGG 0.477320 3_1:+89662847 Msa0385930:CDS
TGGCATGGACAACACGTTCT+GGG 0.477969 3_1:-89661342 None:intergenic
CAGAACGTGTTGTCCATGCC+AGG 0.477991 3_1:+89661344 Msa0385930:CDS
TCCTGTTCGTCATGCAGAAA+AGG 0.478892 3_1:+89663057 Msa0385930:CDS
GTACTGTTGTATACCTTGTA+TGG 0.480503 3_1:-89659974 None:intergenic
ATGTTGAAATTGTATGATAA+AGG 0.480801 3_1:+89664032 Msa0385930:three_prime_UTR
CGAACAGGATCATGCCTTGA+AGG 0.481337 3_1:-89663043 None:intergenic
CTATGTTCTTGTTCAAGACC+AGG 0.484090 3_1:-89662626 None:intergenic
TTATATTAGGGAGGAAAGTA+AGG 0.485579 3_1:+89664328 Msa0385930:three_prime_UTR
CAGAACAACTTCAAGCAGCC+TGG 0.486042 3_1:+89663592 Msa0385930:CDS
GATCCGTTCCCTATCAAATT+GGG 0.489050 3_1:-89661320 None:intergenic
TCTCCTGGATGTGGGACTTG+GGG 0.492998 3_1:-89662194 None:intergenic
TTTCCCAGCCTTGTTGATCA+GGG 0.494239 3_1:-89662343 None:intergenic
GAAAGGAGAATTGTAAGCGC+TGG 0.495605 3_1:-89660167 None:intergenic
GAGTGTGTTATTTATATATG+AGG 0.497128 3_1:+89659829 Msa0385930:five_prime_UTR
GTAGGAAATCTGCACAAGTC+AGG 0.497677 3_1:-89661414 None:intergenic
GTAATGGTAGAGAGAAAGGA+TGG 0.498638 3_1:-89659940 None:intergenic
GAGAAATTAGCAGTAGGAAT+GGG 0.501006 3_1:-89663082 None:intergenic
CAGGCGACCTACGGGCTGAA+GGG 0.503163 3_1:-89662607 None:intergenic
CTCTCTACCATTACCAACCA+TGG 0.503956 3_1:+89659949 Msa0385930:exon
GTTCAAGACCAGGCGACCTA+CGG 0.504173 3_1:-89662616 None:intergenic
TGGGGTTGGGTTTAAGAGCA+TGG 0.506473 3_1:-89662176 None:intergenic
CAGCAGCAATTGAATCATAC+AGG 0.508681 3_1:-89662473 None:intergenic
GGACACCCACATCATCAAAC+AGG 0.511274 3_1:-89662275 None:intergenic
ACCGATCTTGGGCACCCGAC+AGG 0.511670 3_1:+89663623 Msa0385930:CDS
CAGTGTACGTGAAATTTCAC+TGG 0.512177 3_1:+89662367 Msa0385930:CDS
GCACACTTGGGAGCATTAGC+AGG 0.512211 3_1:-89662801 None:intergenic
ACCTGTCGGGTGCCCAAGAT+CGG 0.512897 3_1:-89663624 None:intergenic
GCAGCATCTGGATCTCATAC+TGG 0.513786 3_1:+89663797 Msa0385930:CDS
ATGACAGGTGTCTGAACTCC+AGG 0.514052 3_1:-89661442 None:intergenic
GTATACCTTGTATGGATCCA+TGG 0.516916 3_1:-89659966 None:intergenic
TCACAACAACCTTAAATGCT+AGG 0.522425 3_1:-89663982 None:intergenic
TATTCCCTGATCAACAAGGC+TGG 0.522948 3_1:+89662339 Msa0385930:CDS
TTCAAGACCAGGCGACCTAC+GGG 0.524652 3_1:-89662615 None:intergenic
CAAGTCTTAGTTACATCAAG+TGG 0.525209 3_1:-89662567 None:intergenic
TTGAGTAGCATGGCTGTGGT+TGG 0.529136 3_1:-89662448 None:intergenic
TGGAGAGCGATACCGATCTT+GGG 0.535088 3_1:+89663612 Msa0385930:CDS
CGGATTTCATGGGTGACGCG+TGG 0.535385 3_1:-89663775 None:intergenic
CAACCCCAAGTCCCACATCC+AGG 0.536425 3_1:+89662191 Msa0385930:CDS
AGAGAAATTAGCAGTAGGAA+TGG 0.536458 3_1:-89663083 None:intergenic
AGAGAAAGGATGGAGGACGG+TGG 0.539677 3_1:-89659930 None:intergenic
CCAGGCGACCTACGGGCTGA+AGG 0.540862 3_1:-89662608 None:intergenic
GTAGAGAAACGCACAATGAC+AGG 0.540987 3_1:-89661457 None:intergenic
TCCATGTGCCTATAATCTTG+TGG 0.541036 3_1:-89662297 None:intergenic
CACTTGATGTAACTAAGACT+TGG 0.542839 3_1:+89662568 Msa0385930:CDS
CTGTATGATTCAATTGCTGC+TGG 0.545137 3_1:+89662474 Msa0385930:CDS
TATGGATCCATGGTTGGTAA+TGG 0.545450 3_1:-89659956 None:intergenic
TGAAGGGGTATAATGTCCTC+AGG 0.545718 3_1:-89662591 None:intergenic
GCCAGGGGAGCAAGTGCAAA+GGG 0.546598 3_1:+89661361 Msa0385930:CDS
AGCTCAACGAGTCACGTACA+TGG 0.546903 3_1:-89664127 None:intergenic
AAAGCTTGCCCAATTTGATA+GGG 0.548471 3_1:+89661312 Msa0385930:CDS
TCTCCAATTCTCCTGGATGT+GGG 0.550324 3_1:-89662202 None:intergenic
TGCCAGGGGAGCAAGTGCAA+AGG 0.551070 3_1:+89661360 Msa0385930:CDS
CCAGATGCTGCGGATTTCAT+GGG 0.552199 3_1:-89663785 None:intergenic
GAAGTGTCTGTTGGAGGAAG+AGG 0.554768 3_1:+89662407 Msa0385930:CDS
CCGTCATGAACGAAGAAGAC+AGG 0.555643 3_1:-89662132 None:intergenic
TTTCATTCACAGGGATGAAG+AGG 0.555667 3_1:+89662857 Msa0385930:CDS
TCCCTAACCGTTGGATCTAG+AGG 0.556180 3_1:+89660232 Msa0385930:CDS
GATTCACAGAGGCATAGACT+TGG 0.556685 3_1:+89662759 Msa0385930:CDS
TTGCCCAATTTGATAGGGAA+CGG 0.556792 3_1:+89661317 Msa0385930:CDS
TAGAGAGAAAGGATGGAGGA+CGG 0.560170 3_1:-89659933 None:intergenic
GTTGTTCCAAACAGGTGCAC+CGG 0.562996 3_1:-89660203 None:intergenic
AGGCGACCTACGGGCTGAAG+GGG 0.563132 3_1:-89662606 None:intergenic
AACAACTCATCCCTAACCGT+TGG 0.569919 3_1:+89660223 Msa0385930:CDS
GGAGAATTGTAAGCGCTGGA+TGG 0.570856 3_1:-89660163 None:intergenic
AATTGTAAGCGCTGGATGGA+CGG 0.572978 3_1:-89660159 None:intergenic
ATTCCCTGATCAACAAGGCT+GGG 0.574864 3_1:+89662340 Msa0385930:CDS
GAAAGTGAGAAAAGAAGTCA+AGG 0.576589 3_1:-89662227 None:intergenic
ACCTTGTATGGATCCATGGT+TGG 0.577182 3_1:-89659962 None:intergenic
CCGGAATTTGTAGTCCAGAA+AGG 0.579292 3_1:-89660184 None:intergenic
GGATTTCATGGGTGACGCGT+GGG 0.579795 3_1:-89663774 None:intergenic
ATGTGGTGTGAAGTGTCTGT+TGG 0.580105 3_1:+89662398 Msa0385930:CDS
GAACAGGATCATGCCTTGAA+GGG 0.580459 3_1:-89663042 None:intergenic
GGAGGAAGAGGCCATTAAGG+TGG 0.581156 3_1:+89662419 Msa0385930:CDS
ACCAACCATGGATCCATACA+AGG 0.581655 3_1:+89659961 Msa0385930:exon
TTCATGGGTGACGCGTGGGT+CGG 0.582291 3_1:-89663770 None:intergenic
TGAACAAACAGTTTCCACTC+AGG 0.583241 3_1:-89662504 None:intergenic
AGATAGATTTCTCCGCAGAT+GGG 0.587386 3_1:+89663735 Msa0385930:CDS
CAGACACTTCACACCACATG+TGG 0.589761 3_1:-89662394 None:intergenic
CAAGATTATAGGCACATGGA+TGG 0.589982 3_1:+89662300 Msa0385930:CDS
TAGATTTCTCCGCAGATGGG+TGG 0.591794 3_1:+89663738 Msa0385930:CDS
GAGGAAGAGGCCATTAAGGT+GGG 0.593020 3_1:+89662420 Msa0385930:CDS
TTGCATCTCATCTGAACATG+AGG 0.594906 3_1:+89663959 Msa0385930:CDS
CAGGAAAGTTGTTTCCAACA+AGG 0.596437 3_1:-89662113 None:intergenic
GGTCTTGAGTAGCATGGCTG+TGG 0.596746 3_1:-89662452 None:intergenic
ATGGTAGAGAGAAAGGATGG+AGG 0.597794 3_1:-89659937 None:intergenic
CCCACAAGATTATAGGCACA+TGG 0.598312 3_1:+89662296 Msa0385930:CDS
TGGTGTGAAGTGTCTGTTGG+AGG 0.598470 3_1:+89662401 Msa0385930:CDS
AGAACGTGTTGTCCATGCCA+GGG 0.598996 3_1:+89661345 Msa0385930:CDS
TTTCATGAATTTCATTCACA+GGG 0.601023 3_1:+89662848 Msa0385930:CDS
GAACGTGTTGTCCATGCCAG+GGG 0.604058 3_1:+89661346 Msa0385930:CDS
ACACCAGGCACAATAATGGC+AGG 0.606260 3_1:-89662687 None:intergenic
AAAACCTCGAGGGTCTCTCA+AGG 0.607779 3_1:-89661509 None:intergenic
ATGATAAGATGCTTCAAACC+AGG 0.609656 3_1:+89662721 Msa0385930:CDS
CACATATTCCCTGATCAACA+AGG 0.618103 3_1:+89662335 Msa0385930:CDS
ATTCACAGAGGCATAGACTT+GGG 0.621322 3_1:+89662760 Msa0385930:CDS
ATCAGCATAAGAGAAAATCC+TGG 0.623303 3_1:-89662739 None:intergenic
ATTATACCCCTTCAGCCCGT+AGG 0.626812 3_1:+89662600 Msa0385930:CDS
ATTTCACAGCAAAACCTCGA+GGG 0.627533 3_1:-89661519 None:intergenic
AGATATACCTCTAGATCCAA+CGG 0.631010 3_1:-89660239 None:intergenic
TTGTTGTGGTGAGCACACTT+GGG 0.632968 3_1:-89662813 None:intergenic
CATGCAGAGAAATTAGCAGT+AGG 0.633318 3_1:-89663088 None:intergenic
TGAAATTCATGAAACCCTCA+TGG 0.640371 3_1:-89662839 None:intergenic
TCTGAACTCCAGGAGCTCGT+AGG 0.643310 3_1:-89661432 None:intergenic
ACAGGAAGGAGAACATGTGA+AGG 0.645069 3_1:-89662257 None:intergenic
TGTGCCTGGTGTATATTACT+CGG 0.653190 3_1:+89662698 Msa0385930:CDS
CATACAGGTCTTGAGTAGCA+TGG 0.654493 3_1:-89662458 None:intergenic
TTTCACTGGAAGCCCACATG+TGG 0.658894 3_1:+89662381 Msa0385930:CDS
AAGTCTTAGTTACATCAAGT+GGG 0.661737 3_1:-89662566 None:intergenic
AACCCTCATGGTGATTGTTG+TGG 0.663659 3_1:-89662827 None:intergenic
CGTCTGACATTATATTAGGG+AGG 0.665248 3_1:+89664319 Msa0385930:three_prime_UTR
CACCACAACAATCACCATGA+GGG 0.667620 3_1:+89662825 Msa0385930:CDS
TCTACTGTCATTCATGAACG+TGG 0.669221 3_1:+89661475 Msa0385930:CDS
ACCCACATCATCAAACAGGA+AGG 0.673105 3_1:-89662271 None:intergenic
ATAAAGCATCCACCCATCTG+CGG 0.685814 3_1:-89663747 None:intergenic
AGTATGAGATCCAGATGCTG+CGG 0.691680 3_1:-89663795 None:intergenic
AATTTCACAGCAAAACCTCG+AGG 0.694899 3_1:-89661520 None:intergenic
CTGCTGGTAACTATCCTGAG+TGG 0.697296 3_1:+89662490 Msa0385930:CDS
AGACACTTCACACCACATGT+GGG 0.702081 3_1:-89662393 None:intergenic
TCATCCGAGTAATATACACC+AGG 0.707390 3_1:-89662702 None:intergenic
GAAGAGGCCATTAAGGTGGG+AGG 0.707656 3_1:+89662423 Msa0385930:CDS
TCTCTTATGCTGATTCACAG+AGG 0.714659 3_1:+89662748 Msa0385930:CDS
TCACCACAACAATCACCATG+AGG 0.719886 3_1:+89662824 Msa0385930:CDS
TGTAACTAAGACTTGGCCTG+AGG 0.723437 3_1:+89662575 Msa0385930:CDS
GAAACCTTGAGAGACCCTCG+AGG 0.734649 3_1:+89661505 Msa0385930:CDS
TGTGAAATTCTACACCAGAG+AGG 0.748378 3_1:+89661534 Msa0385930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAGAAAAAAGAAAAT+AGG + chr3_1:89659787-89659806 Msa0385930:five_prime_UTR 10.0%
!! AAAAGAATAATTTAAAGATA+TGG - chr3_1:89660323-89660342 None:intergenic 10.0%
!!! ACAACATTTTTTTTTAAATA+AGG - chr3_1:89663220-89663239 None:intergenic 10.0%
!! TGTTAAATTATATGATTTCA+CGG + chr3_1:89660380-89660399 Msa0385930:intron 15.0%
!!! GTTTTCATAAACTATAATAA+TGG + chr3_1:89660734-89660753 Msa0385930:intron 15.0%
!! TTTAATTAAATGCTACATTT+GGG - chr3_1:89661744-89661763 None:intergenic 15.0%
!! TAGCATTTAATTAAACAATT+TGG + chr3_1:89661749-89661768 Msa0385930:intron 15.0%
!!! TAAGAATATTTCACAAATTT+TGG - chr3_1:89663270-89663289 None:intergenic 15.0%
!!! AATCTATCAATTTGTTTTCT+TGG + chr3_1:89660098-89660117 Msa0385930:intron 20.0%
!! ATAAGTTGTTTATCCAAATA+TGG - chr3_1:89660496-89660515 None:intergenic 20.0%
!!! TTATATTATTTTACCCCTTT+TGG + chr3_1:89661252-89661271 Msa0385930:intron 20.0%
!! TTAATTAAATGCTACATTTG+GGG - chr3_1:89661743-89661762 None:intergenic 20.0%
!! GTTTAATTAAATGCTACATT+TGG - chr3_1:89661745-89661764 None:intergenic 20.0%
!! TTAATTAAACAATTTGGTCT+AGG + chr3_1:89661755-89661774 Msa0385930:intron 20.0%
!! TAATTAAACAATTTGGTCTA+GGG + chr3_1:89661756-89661775 Msa0385930:intron 20.0%
!! TTGAAATTTCAAAGTACAAA+GGG - chr3_1:89661856-89661875 None:intergenic 20.0%
!!! TTTGAAATTTCAAAGTACAA+AGG - chr3_1:89661857-89661876 None:intergenic 20.0%
!!! GACAATAATTGTTTTAAAAG+AGG + chr3_1:89662018-89662037 Msa0385930:intron 20.0%
!!! TGCAAATTAATTTGAAGTTT+AGG + chr3_1:89663398-89663417 Msa0385930:intron 20.0%
!! ATGTTGAAATTGTATGATAA+AGG + chr3_1:89664032-89664051 Msa0385930:three_prime_UTR 20.0%
!! TGTTTGTTTGGATAATTTAA+AGG + chr3_1:89664056-89664075 Msa0385930:three_prime_UTR 20.0%
!!! TTGCATTGATAAGTTTTATT+TGG + chr3_1:89664275-89664294 Msa0385930:three_prime_UTR 20.0%
!!! TTGATAAGTTTTATTTGGTT+AGG + chr3_1:89664280-89664299 Msa0385930:three_prime_UTR 20.0%
! AAAATAGGAGAGTGAAAAAA+GGG + chr3_1:89659802-89659821 Msa0385930:five_prime_UTR 25.0%
!!! GAGTGTGTTATTTATATATG+AGG + chr3_1:89659829-89659848 Msa0385930:five_prime_UTR 25.0%
! AAATATGCGCTTATAGTATA+AGG + chr3_1:89660470-89660489 Msa0385930:intron 25.0%
! TTATAGTATAAGGCCATATT+TGG + chr3_1:89660480-89660499 Msa0385930:intron 25.0%
! TGGTATATGATAGAATACTA+TGG + chr3_1:89660638-89660657 Msa0385930:intron 25.0%
! CAGTTATATCAAAAACAGTT+AGG - chr3_1:89660875-89660894 None:intergenic 25.0%
! TGATATAACTGAAGCTATAA+TGG + chr3_1:89660884-89660903 Msa0385930:intron 25.0%
! GATATAACTGAAGCTATAAT+GGG + chr3_1:89660885-89660904 Msa0385930:intron 25.0%
! AAGTTATGATATGTCATAAC+TGG - chr3_1:89660986-89661005 None:intergenic 25.0%
! GATTGTGTTGAAACTATTAT+CGG - chr3_1:89661689-89661708 None:intergenic 25.0%
! CTGTAATTATATTTAGTCAC+TGG - chr3_1:89661920-89661939 None:intergenic 25.0%
!!! TTGTTTTAAAAGAGGTGATA+CGG + chr3_1:89662026-89662045 Msa0385930:intron 25.0%
! TTTCATGAATTTCATTCACA+GGG + chr3_1:89662848-89662867 Msa0385930:CDS 25.0%
!! TATCACATTTAGAGTTATCA+TGG - chr3_1:89662948-89662967 None:intergenic 25.0%
! GAAGTAATTGACCTATAAAA+TGG - chr3_1:89663023-89663042 None:intergenic 25.0%
! AAAAATCTATGATCTTTCGT+TGG + chr3_1:89663303-89663322 Msa0385930:intron 25.0%
! TTAATATTTAACCAAGGTAG+TGG - chr3_1:89663373-89663392 None:intergenic 25.0%
! ACCTTGGTTAAATATTAAGT+TGG + chr3_1:89663375-89663394 Msa0385930:intron 25.0%
! ACCAACTTAATATTTAACCA+AGG - chr3_1:89663379-89663398 None:intergenic 25.0%
! TATAAAATAAATGACGAGTG+AGG + chr3_1:89663470-89663489 Msa0385930:intron 25.0%
! TATTGTTTAAACAGCTTTAC+TGG - chr3_1:89663511-89663530 None:intergenic 25.0%
! TGTTTAAACAATACCTGTAT+TGG + chr3_1:89663518-89663537 Msa0385930:intron 25.0%
! GTTTAAACAATACCTGTATT+GGG + chr3_1:89663519-89663538 Msa0385930:intron 25.0%
! TTTAAACAATACCTGTATTG+GGG + chr3_1:89663520-89663539 Msa0385930:intron 25.0%
!! TCATATCAGTATTTTGTAAC+AGG - chr3_1:89663651-89663670 None:intergenic 25.0%
! TATGATAAAGGATGTTTGTT+TGG + chr3_1:89664044-89664063 Msa0385930:three_prime_UTR 25.0%
! ACTTATCAATGCAATCAATT+TGG - chr3_1:89664269-89664288 None:intergenic 25.0%
!!! ATAAGTTTTATTTGGTTAGG+AGG + chr3_1:89664283-89664302 Msa0385930:three_prime_UTR 25.0%
GAAAATAGGAGAGTGAAAAA+AGG + chr3_1:89659801-89659820 Msa0385930:five_prime_UTR 30.0%
AAATAGGAGAGTGAAAAAAG+GGG + chr3_1:89659803-89659822 Msa0385930:five_prime_UTR 30.0%
AGAAGAAGAAGAAGAAGAAA+TGG - chr3_1:89659910-89659929 None:intergenic 30.0%
TAACAGTGATTAAACTTTGC+TGG - chr3_1:89660365-89660384 None:intergenic 30.0%
TGGATGTCATAACATTAAAC+TGG - chr3_1:89660418-89660437 None:intergenic 30.0%
!! ATGTTATCAGCTGTTTTCAT+AGG + chr3_1:89660794-89660813 Msa0385930:intron 30.0%
!! TCGTACATGTGATACTTTTT+AGG - chr3_1:89660824-89660843 None:intergenic 30.0%
ATGTTATTATGAGCAGCTTA+TGG + chr3_1:89660946-89660965 Msa0385930:intron 30.0%
GGCGTGGTTTATATAAAAAT+TGG - chr3_1:89661087-89661106 None:intergenic 30.0%
TCGTAATTAGTTATCACCAT+TGG + chr3_1:89661138-89661157 Msa0385930:intron 30.0%
TGTAAAGTTCAGGGTTAATT+TGG + chr3_1:89661197-89661216 Msa0385930:intron 30.0%
TGATAATCTTCCAAGAGAAT+TGG - chr3_1:89661283-89661302 None:intergenic 30.0%
TTCATTAATTTCTACCTCTC+TGG - chr3_1:89661551-89661570 None:intergenic 30.0%
TATTTAGTCGCTAGAAGATA+TGG - chr3_1:89661596-89661615 None:intergenic 30.0%
!!! GTGTTGTCTTCAATTTTTTC+AGG - chr3_1:89661799-89661818 None:intergenic 30.0%
TATCTTTACCTTCTAATCAC+AGG + chr3_1:89662080-89662099 Msa0385930:intron 30.0%
ATCTTTACCTTCTAATCACA+GGG + chr3_1:89662081-89662100 Msa0385930:intron 30.0%
AAGTCTTAGTTACATCAAGT+GGG - chr3_1:89662569-89662588 None:intergenic 30.0%
GTTTCATGAATTTCATTCAC+AGG + chr3_1:89662847-89662866 Msa0385930:CDS 30.0%
! AATCGAAACTAACCTTTTCA+CGG - chr3_1:89663114-89663133 None:intergenic 30.0%
GCAATCAATCGTAAAAATCA+CGG - chr3_1:89663193-89663212 None:intergenic 30.0%
!! TTGGTTGTTTCTAAAATGTG+TGG - chr3_1:89663251-89663270 None:intergenic 30.0%
TGATCAACATGAATTGTGTT+TGG + chr3_1:89663668-89663687 Msa0385930:intron 30.0%
!! GTTTGGTGATGTCTAATATT+TGG + chr3_1:89663685-89663704 Msa0385930:intron 30.0%
! TTCTTTGCCTTAATCTTTTC+AGG + chr3_1:89663710-89663729 Msa0385930:intron 30.0%
TATCTTGCCTGAAAAGATTA+AGG - chr3_1:89663720-89663739 None:intergenic 30.0%
AGCATATGAGCAAATAAGTA+GGG - chr3_1:89663892-89663911 None:intergenic 30.0%
ACTACGTCTGACATTATATT+AGG + chr3_1:89664315-89664334 Msa0385930:three_prime_UTR 30.0%
CTACGTCTGACATTATATTA+GGG + chr3_1:89664316-89664335 Msa0385930:three_prime_UTR 30.0%
TTATATTAGGGAGGAAAGTA+AGG + chr3_1:89664328-89664347 Msa0385930:three_prime_UTR 30.0%
GTACTGTTGTATACCTTGTA+TGG - chr3_1:89659977-89659996 None:intergenic 35.0%
AGATATACCTCTAGATCCAA+CGG - chr3_1:89660242-89660261 None:intergenic 35.0%
CGATTTAGAGATCAATGAGT+TGG + chr3_1:89660618-89660637 Msa0385930:intron 35.0%
AATAAGCTGAAAACAGCTCA+TGG + chr3_1:89660769-89660788 Msa0385930:intron 35.0%
TCAACTAAGCCTATACAAAC+AGG + chr3_1:89660849-89660868 Msa0385930:intron 35.0%
GCCACATTTAGTTGAGTATT+GGG + chr3_1:89661104-89661123 Msa0385930:intron 35.0%
! CCACATTTAGTTGAGTATTG+GGG + chr3_1:89661105-89661124 Msa0385930:intron 35.0%
! CACCATTGGTAATTACAACT+TGG + chr3_1:89661152-89661171 Msa0385930:intron 35.0%
TGAACTTTACAACAGACAGA+TGG - chr3_1:89661188-89661207 None:intergenic 35.0%
ATCTGTCTGTTGTAAAGTTC+AGG + chr3_1:89661187-89661206 Msa0385930:intron 35.0%
TCTGTCTGTTGTAAAGTTCA+GGG + chr3_1:89661188-89661207 Msa0385930:intron 35.0%
!! ATTATTTTACCCCTTTTGGC+AGG + chr3_1:89661256-89661275 Msa0385930:intron 35.0%
CTTGGAAGATTATCATCTTG+TGG + chr3_1:89661288-89661307 Msa0385930:CDS 35.0%
AAAAGCTTGCCCAATTTGAT+AGG + chr3_1:89661311-89661330 Msa0385930:CDS 35.0%
AAAGCTTGCCCAATTTGATA+GGG + chr3_1:89661312-89661331 Msa0385930:CDS 35.0%
TTAACCAACTCCAGTTTAGT+TGG + chr3_1:89661656-89661675 Msa0385930:intron 35.0%
TTTACCAACTAAACTGGAGT+TGG - chr3_1:89661663-89661682 None:intergenic 35.0%
AACAATTTGGTCTAGGGATT+TGG + chr3_1:89661762-89661781 Msa0385930:intron 35.0%
AAAGTTACCCTGTGATTAGA+AGG - chr3_1:89662091-89662110 None:intergenic 35.0%
GAAAGTGAGAAAAGAAGTCA+AGG - chr3_1:89662230-89662249 None:intergenic 35.0%
CAAGTCTTAGTTACATCAAG+TGG - chr3_1:89662570-89662589 None:intergenic 35.0%
CACTTGATGTAACTAAGACT+TGG + chr3_1:89662568-89662587 Msa0385930:CDS 35.0%
ATATACACCAGGCACAATAA+TGG - chr3_1:89662694-89662713 None:intergenic 35.0%
ATGATAAGATGCTTCAAACC+AGG + chr3_1:89662721-89662740 Msa0385930:CDS 35.0%
ATCAGCATAAGAGAAAATCC+TGG - chr3_1:89662742-89662761 None:intergenic 35.0%
TGAAATTCATGAAACCCTCA+TGG - chr3_1:89662842-89662861 None:intergenic 35.0%
GAGAAATTAGCAGTAGGAAT+GGG - chr3_1:89663085-89663104 None:intergenic 35.0%
AGAGAAATTAGCAGTAGGAA+TGG - chr3_1:89663086-89663105 None:intergenic 35.0%
TGACAAAGAAGCAGAGAAAT+AGG + chr3_1:89663346-89663365 Msa0385930:intron 35.0%
! ATTTTGTAACAGGAACCTGT+CGG - chr3_1:89663641-89663660 None:intergenic 35.0%
GAGCATATGAGCAAATAAGT+AGG - chr3_1:89663893-89663912 None:intergenic 35.0%
TTTGCTCATATGCTCTTTGT+TGG + chr3_1:89663898-89663917 Msa0385930:intron 35.0%
!!! CTTTGTTGGTTTTACTATGC+AGG + chr3_1:89663912-89663931 Msa0385930:intron 35.0%
TCACAACAACCTTAAATGCT+AGG - chr3_1:89663985-89664004 None:intergenic 35.0%
AATTTCAACATCTGCAACTC+TGG - chr3_1:89664023-89664042 None:intergenic 35.0%
GTAATGGTAGAGAGAAAGGA+TGG - chr3_1:89659943-89659962 None:intergenic 40.0%
!! GTTGGTAATGGTAGAGAGAA+AGG - chr3_1:89659947-89659966 None:intergenic 40.0%
!! TATGGATCCATGGTTGGTAA+TGG - chr3_1:89659959-89659978 None:intergenic 40.0%
GTATACCTTGTATGGATCCA+TGG - chr3_1:89659969-89659988 None:intergenic 40.0%
CCTTTCTGGACTACAAATTC+CGG + chr3_1:89660184-89660203 Msa0385930:CDS 40.0%
! GATGAGTTGTTGTTCCAAAC+AGG - chr3_1:89660214-89660233 None:intergenic 40.0%
GACATCCATGCATGTGATTA+AGG + chr3_1:89660430-89660449 Msa0385930:intron 40.0%
AAGAGCCTTAATCACATGCA+TGG - chr3_1:89660438-89660457 None:intergenic 40.0%
ACAGTTAGGCCTGTTTGTAT+AGG - chr3_1:89660861-89660880 None:intergenic 40.0%
AGCAATTGAGAGGGTTTACT+TGG - chr3_1:89661037-89661056 None:intergenic 40.0%
ATACTCAACTAAATGTGGCG+TGG - chr3_1:89661103-89661122 None:intergenic 40.0%
CGCCACATTTAGTTGAGTAT+TGG + chr3_1:89661103-89661122 Msa0385930:intron 40.0%
CCCCAATACTCAACTAAATG+TGG - chr3_1:89661108-89661127 None:intergenic 40.0%
CGCCAAGTTGTAATTACCAA+TGG - chr3_1:89661157-89661176 None:intergenic 40.0%
TTGCCCAATTTGATAGGGAA+CGG + chr3_1:89661317-89661336 Msa0385930:CDS 40.0%
GATCCGTTCCCTATCAAATT+GGG - chr3_1:89661323-89661342 None:intergenic 40.0%
TCTACTGTCATTCATGAACG+TGG + chr3_1:89661475-89661494 Msa0385930:CDS 40.0%
ATTTCACAGCAAAACCTCGA+GGG - chr3_1:89661522-89661541 None:intergenic 40.0%
AATTTCACAGCAAAACCTCG+AGG - chr3_1:89661523-89661542 None:intergenic 40.0%
TGTGAAATTCTACACCAGAG+AGG + chr3_1:89661534-89661553 Msa0385930:CDS 40.0%
! CGGCATTTTACCAACTAAAC+TGG - chr3_1:89661669-89661688 None:intergenic 40.0%
GAAGACAACACATGCATTGT+TGG + chr3_1:89661808-89661827 Msa0385930:intron 40.0%
ACAAAGGGTTTAGACAATGC+TGG - chr3_1:89661841-89661860 None:intergenic 40.0%
AAGTAGTTGCAGTTGTAACC+AGG + chr3_1:89661971-89661990 Msa0385930:intron 40.0%
AAGCAAATACACAAGCATCC+TGG - chr3_1:89661992-89662011 None:intergenic 40.0%
! CAGGAAAGTTGTTTCCAACA+AGG - chr3_1:89662116-89662135 None:intergenic 40.0%
! CGGGATGAATTTTCCAGATA+TGG + chr3_1:89662152-89662171 Msa0385930:CDS 40.0%
! TTAAGAGCATGGACCATATC+TGG - chr3_1:89662168-89662187 None:intergenic 40.0%
!! TCCTTCCTGTTTGATGATGT+GGG + chr3_1:89662270-89662289 Msa0385930:CDS 40.0%
CCATGTGCCTATAATCTTGT+GGG - chr3_1:89662299-89662318 None:intergenic 40.0%
TCCATGTGCCTATAATCTTG+TGG - chr3_1:89662300-89662319 None:intergenic 40.0%
CAAGATTATAGGCACATGGA+TGG + chr3_1:89662300-89662319 Msa0385930:CDS 40.0%
! TATAGGCACATGGATGGTTT+TGG + chr3_1:89662306-89662325 Msa0385930:CDS 40.0%
CACATATTCCCTGATCAACA+AGG + chr3_1:89662335-89662354 Msa0385930:CDS 40.0%
CAGTGTACGTGAAATTTCAC+TGG + chr3_1:89662367-89662386 Msa0385930:CDS 40.0%
CAGCAGCAATTGAATCATAC+AGG - chr3_1:89662476-89662495 None:intergenic 40.0%
CTGTATGATTCAATTGCTGC+TGG + chr3_1:89662474-89662493 Msa0385930:CDS 40.0%
TGAACAAACAGTTTCCACTC+AGG - chr3_1:89662507-89662526 None:intergenic 40.0%
TCAAATTTGTCTTCGTGAGC+AGG - chr3_1:89662540-89662559 None:intergenic 40.0%
CTATGTTCTTGTTCAAGACC+AGG - chr3_1:89662629-89662648 None:intergenic 40.0%
TGTGCCTGGTGTATATTACT+CGG + chr3_1:89662698-89662717 Msa0385930:CDS 40.0%
TCATCCGAGTAATATACACC+AGG - chr3_1:89662705-89662724 None:intergenic 40.0%
!! TCTCTTATGCTGATTCACAG+AGG + chr3_1:89662748-89662767 Msa0385930:CDS 40.0%
! ATTCACAGAGGCATAGACTT+GGG + chr3_1:89662760-89662779 Msa0385930:CDS 40.0%
TTTCATTCACAGGGATGAAG+AGG + chr3_1:89662857-89662876 Msa0385930:CDS 40.0%
!!! CTTGAGCTCTGCCATTTTAT+AGG + chr3_1:89663009-89663028 Msa0385930:intron 40.0%
AGGTCAATTACTTCCCTTCA+AGG + chr3_1:89663029-89663048 Msa0385930:intron 40.0%
CATGCAGAGAAATTAGCAGT+AGG - chr3_1:89663091-89663110 None:intergenic 40.0%
ATCGTAAAAATCACGGCTGA+TGG - chr3_1:89663186-89663205 None:intergenic 40.0%
CATACATTCTTCCCCAATAC+AGG - chr3_1:89663534-89663553 None:intergenic 40.0%
TGCTTGAAGTTGTTCTGCTT+TGG - chr3_1:89663589-89663608 None:intergenic 40.0%
! TTTTGTAACAGGAACCTGTC+GGG - chr3_1:89663640-89663659 None:intergenic 40.0%
AAGATAGATTTCTCCGCAGA+TGG + chr3_1:89663734-89663753 Msa0385930:CDS 40.0%
AGATAGATTTCTCCGCAGAT+GGG + chr3_1:89663735-89663754 Msa0385930:CDS 40.0%
TTGCATCTCATCTGAACATG+AGG + chr3_1:89663959-89663978 Msa0385930:CDS 40.0%
AACATGAGGCCTAGCATTTA+AGG + chr3_1:89663973-89663992 Msa0385930:CDS 40.0%
CGTCTGACATTATATTAGGG+AGG + chr3_1:89664319-89664338 Msa0385930:three_prime_UTR 40.0%
TAGAGAGAAAGGATGGAGGA+CGG - chr3_1:89659936-89659955 None:intergenic 45.0%
ATGGTAGAGAGAAAGGATGG+AGG - chr3_1:89659940-89659959 None:intergenic 45.0%
CTCTCTACCATTACCAACCA+TGG + chr3_1:89659949-89659968 Msa0385930:exon 45.0%
ACCAACCATGGATCCATACA+AGG + chr3_1:89659961-89659980 Msa0385930:exon 45.0%
ACCTTGTATGGATCCATGGT+TGG - chr3_1:89659965-89659984 None:intergenic 45.0%
!! AATTGTAAGCGCTGGATGGA+CGG - chr3_1:89660162-89660181 None:intergenic 45.0%
GAAAGGAGAATTGTAAGCGC+TGG - chr3_1:89660170-89660189 None:intergenic 45.0%
GCGCTTACAATTCTCCTTTC+TGG + chr3_1:89660170-89660189 Msa0385930:CDS 45.0%
CCGGAATTTGTAGTCCAGAA+AGG - chr3_1:89660187-89660206 None:intergenic 45.0%
AACAACTCATCCCTAACCGT+TGG + chr3_1:89660223-89660242 Msa0385930:CDS 45.0%
ACCTCTAGATCCAACGGTTA+GGG - chr3_1:89660236-89660255 None:intergenic 45.0%
TACCTCTAGATCCAACGGTT+AGG - chr3_1:89660237-89660256 None:intergenic 45.0%
! AAGCCTTATCCCACTATGTG+GGG - chr3_1:89660687-89660706 None:intergenic 45.0%
! CAAGCCTTATCCCACTATGT+GGG - chr3_1:89660688-89660707 None:intergenic 45.0%
! ATAGTGGGATAAGGCTTGGT+TGG + chr3_1:89660690-89660709 Msa0385930:intron 45.0%
CACACATGCAGCAATTGAGA+GGG - chr3_1:89661046-89661065 None:intergenic 45.0%
AGAATTGGACCTGCCAAAAG+GGG - chr3_1:89661268-89661287 None:intergenic 45.0%
GAGAATTGGACCTGCCAAAA+GGG - chr3_1:89661269-89661288 None:intergenic 45.0%
AGAGAATTGGACCTGCCAAA+AGG - chr3_1:89661270-89661289 None:intergenic 45.0%
TTTGGCAGGTCCAATTCTCT+TGG + chr3_1:89661270-89661289 Msa0385930:intron 45.0%
GGATCCGTTCCCTATCAAAT+TGG - chr3_1:89661324-89661343 None:intergenic 45.0%
GTAGGAAATCTGCACAAGTC+AGG - chr3_1:89661417-89661436 None:intergenic 45.0%
GTAGAGAAACGCACAATGAC+AGG - chr3_1:89661460-89661479 None:intergenic 45.0%
AAGAGGTGATACGGAACAGT+TGG + chr3_1:89662035-89662054 Msa0385930:intron 45.0%
CAGGGTAACTTTGACCTTGT+TGG + chr3_1:89662099-89662118 Msa0385930:intron 45.0%
CCTGTCTTCTTCGTTCATGA+CGG + chr3_1:89662132-89662151 Msa0385930:CDS 45.0%
CTGTCTTCTTCGTTCATGAC+GGG + chr3_1:89662133-89662152 Msa0385930:CDS 45.0%
TCTCCAATTCTCCTGGATGT+GGG - chr3_1:89662205-89662224 None:intergenic 45.0%
TTCTCCAATTCTCCTGGATG+TGG - chr3_1:89662206-89662225 None:intergenic 45.0%
CAAGGATTCTCCAATTCTCC+TGG - chr3_1:89662212-89662231 None:intergenic 45.0%
GAGAACATGTGAAGGCTTTC+TGG - chr3_1:89662252-89662271 None:intergenic 45.0%
ACAGGAAGGAGAACATGTGA+AGG - chr3_1:89662260-89662279 None:intergenic 45.0%
!! CTCCTTCCTGTTTGATGATG+TGG + chr3_1:89662269-89662288 Msa0385930:CDS 45.0%
ACCCACATCATCAAACAGGA+AGG - chr3_1:89662274-89662293 None:intergenic 45.0%
TGGGTGTCCCACAAGATTAT+AGG + chr3_1:89662289-89662308 Msa0385930:CDS 45.0%
CCCACAAGATTATAGGCACA+TGG + chr3_1:89662296-89662315 Msa0385930:CDS 45.0%
TATTCCCTGATCAACAAGGC+TGG + chr3_1:89662339-89662358 Msa0385930:CDS 45.0%
ATTCCCTGATCAACAAGGCT+GGG + chr3_1:89662340-89662359 Msa0385930:CDS 45.0%
!! TTTCCCAGCCTTGTTGATCA+GGG - chr3_1:89662346-89662365 None:intergenic 45.0%
AGACACTTCACACCACATGT+GGG - chr3_1:89662396-89662415 None:intergenic 45.0%
! ATGTGGTGTGAAGTGTCTGT+TGG + chr3_1:89662398-89662417 Msa0385930:CDS 45.0%
CATACAGGTCTTGAGTAGCA+TGG - chr3_1:89662461-89662480 None:intergenic 45.0%
TGTAACTAAGACTTGGCCTG+AGG + chr3_1:89662575-89662594 Msa0385930:CDS 45.0%
! TGAAGGGGTATAATGTCCTC+AGG - chr3_1:89662594-89662613 None:intergenic 45.0%
! GATTCACAGAGGCATAGACT+TGG + chr3_1:89662759-89662778 Msa0385930:CDS 45.0%
GCAGGAAGTTGCAGATAGTT+TGG - chr3_1:89662786-89662805 None:intergenic 45.0%
TTGTTGTGGTGAGCACACTT+GGG - chr3_1:89662816-89662835 None:intergenic 45.0%
ATTGTTGTGGTGAGCACACT+TGG - chr3_1:89662817-89662836 None:intergenic 45.0%
TCACCACAACAATCACCATG+AGG + chr3_1:89662824-89662843 Msa0385930:CDS 45.0%
CACCACAACAATCACCATGA+GGG + chr3_1:89662825-89662844 Msa0385930:CDS 45.0%
AACCCTCATGGTGATTGTTG+TGG - chr3_1:89662830-89662849 None:intergenic 45.0%
GAACAGGATCATGCCTTGAA+GGG - chr3_1:89663045-89663064 None:intergenic 45.0%
TCCTGTTCGTCATGCAGAAA+AGG + chr3_1:89663057-89663076 Msa0385930:CDS 45.0%
! ACCTTTTCTGCATGACGAAC+AGG - chr3_1:89663061-89663080 None:intergenic 45.0%
TTTCTCTGCATGCCGTGAAA+AGG + chr3_1:89663099-89663118 Msa0385930:CDS 45.0%
GAGAAATAGGTCCACTACCT+TGG + chr3_1:89663359-89663378 Msa0385930:intron 45.0%
! ATAAAGCATCCACCCATCTG+CGG - chr3_1:89663750-89663769 None:intergenic 45.0%
AGTATGAGATCCAGATGCTG+CGG - chr3_1:89663798-89663817 None:intergenic 45.0%
!! GGAGAATTGTAAGCGCTGGA+TGG - chr3_1:89660166-89660185 None:intergenic 50.0%
CAAATTCCGGTGCACCTGTT+TGG + chr3_1:89660197-89660216 Msa0385930:CDS 50.0%
GTTGTTCCAAACAGGTGCAC+CGG - chr3_1:89660206-89660225 None:intergenic 50.0%
TCCCTAACCGTTGGATCTAG+AGG + chr3_1:89660232-89660251 Msa0385930:CDS 50.0%
CTTATCCCACTATGTGGGGT+CGG - chr3_1:89660683-89660702 None:intergenic 50.0%
! CCAAGCCTTATCCCACTATG+TGG - chr3_1:89660689-89660708 None:intergenic 50.0%
! CCACATAGTGGGATAAGGCT+TGG + chr3_1:89660686-89660705 Msa0385930:intron 50.0%
GCACACATGCAGCAATTGAG+AGG - chr3_1:89661047-89661066 None:intergenic 50.0%
TGGCATGGACAACACGTTCT+GGG - chr3_1:89661345-89661364 None:intergenic 50.0%
AGAACGTGTTGTCCATGCCA+GGG + chr3_1:89661345-89661364 Msa0385930:CDS 50.0%
ATGACAGGTGTCTGAACTCC+AGG - chr3_1:89661445-89661464 None:intergenic 50.0%
GAGGGTCTCTCAAGGTTTCA+GGG - chr3_1:89661504-89661523 None:intergenic 50.0%
AAAACCTCGAGGGTCTCTCA+AGG - chr3_1:89661512-89661531 None:intergenic 50.0%
CCGTCATGAACGAAGAAGAC+AGG - chr3_1:89662135-89662154 None:intergenic 50.0%
TGGGGTTGGGTTTAAGAGCA+TGG - chr3_1:89662179-89662198 None:intergenic 50.0%
TTCTCCTGGATGTGGGACTT+GGG - chr3_1:89662198-89662217 None:intergenic 50.0%
ATTCTCCTGGATGTGGGACT+TGG - chr3_1:89662199-89662218 None:intergenic 50.0%
AGTCCCACATCCAGGAGAAT+TGG + chr3_1:89662199-89662218 Msa0385930:CDS 50.0%
GGACACCCACATCATCAAAC+AGG - chr3_1:89662278-89662297 None:intergenic 50.0%
!! CTTTCCCAGCCTTGTTGATC+AGG - chr3_1:89662347-89662366 None:intergenic 50.0%
TTTCACTGGAAGCCCACATG+TGG + chr3_1:89662381-89662400 Msa0385930:CDS 50.0%
CAGACACTTCACACCACATG+TGG - chr3_1:89662397-89662416 None:intergenic 50.0%
! TGGTGTGAAGTGTCTGTTGG+AGG + chr3_1:89662401-89662420 Msa0385930:CDS 50.0%
! GAAGTGTCTGTTGGAGGAAG+AGG + chr3_1:89662407-89662426 Msa0385930:CDS 50.0%
GTTGGAGGAAGAGGCCATTA+AGG + chr3_1:89662416-89662435 Msa0385930:CDS 50.0%
GAGGAAGAGGCCATTAAGGT+GGG + chr3_1:89662420-89662439 Msa0385930:CDS 50.0%
GTTGGATCCTCCCACCTTAA+TGG - chr3_1:89662433-89662452 None:intergenic 50.0%
TTGAGTAGCATGGCTGTGGT+TGG - chr3_1:89662451-89662470 None:intergenic 50.0%
CTGCTGGTAACTATCCTGAG+TGG + chr3_1:89662490-89662509 Msa0385930:CDS 50.0%
ATTATACCCCTTCAGCCCGT+AGG + chr3_1:89662600-89662619 Msa0385930:CDS 50.0%
TGTCCTGCCATTATTGTGCC+TGG + chr3_1:89662684-89662703 Msa0385930:CDS 50.0%
ACACCAGGCACAATAATGGC+AGG - chr3_1:89662690-89662709 None:intergenic 50.0%
CGAACAGGATCATGCCTTGA+AGG - chr3_1:89663046-89663065 None:intergenic 50.0%
CAGAACAACTTCAAGCAGCC+TGG + chr3_1:89663592-89663611 Msa0385930:CDS 50.0%
TGGAGAGCGATACCGATCTT+GGG + chr3_1:89663612-89663631 Msa0385930:CDS 50.0%
TAGATTTCTCCGCAGATGGG+TGG + chr3_1:89663738-89663757 Msa0385930:CDS 50.0%
CCAGATGCTGCGGATTTCAT+GGG - chr3_1:89663788-89663807 None:intergenic 50.0%
TCCAGATGCTGCGGATTTCA+TGG - chr3_1:89663789-89663808 None:intergenic 50.0%
GCAGCATCTGGATCTCATAC+TGG + chr3_1:89663797-89663816 Msa0385930:CDS 50.0%
! CTGGATCTCATACTGGTCTC+AGG + chr3_1:89663804-89663823 Msa0385930:CDS 50.0%
ATGCAGGCTGATCGTTCTCT+TGG + chr3_1:89663928-89663947 Msa0385930:intron 50.0%
AGCTCAACGAGTCACGTACA+TGG - chr3_1:89664130-89664149 None:intergenic 50.0%
AGAGAAAGGATGGAGGACGG+TGG - chr3_1:89659933-89659952 None:intergenic 55.0%
ACTATGTGGGGTCGGCTACA+TGG - chr3_1:89660675-89660694 None:intergenic 55.0%
ATGTAGCCGACCCCACATAG+TGG + chr3_1:89660674-89660693 Msa0385930:intron 55.0%
TGTAGCCGACCCCACATAGT+GGG + chr3_1:89660675-89660694 Msa0385930:intron 55.0%
! CGACCCCACATAGTGGGATA+AGG + chr3_1:89660681-89660700 Msa0385930:intron 55.0%
CTGGCATGGACAACACGTTC+TGG - chr3_1:89661346-89661365 None:intergenic 55.0%
CAGAACGTGTTGTCCATGCC+AGG + chr3_1:89661344-89661363 Msa0385930:CDS 55.0%
GAACGTGTTGTCCATGCCAG+GGG + chr3_1:89661346-89661365 Msa0385930:CDS 55.0%
GCAGATTTCCTACGAGCTCC+TGG + chr3_1:89661424-89661443 Msa0385930:CDS 55.0%
TCTGAACTCCAGGAGCTCGT+AGG - chr3_1:89661435-89661454 None:intergenic 55.0%
CGAGGGTCTCTCAAGGTTTC+AGG - chr3_1:89661505-89661524 None:intergenic 55.0%
GAAACCTTGAGAGACCCTCG+AGG + chr3_1:89661505-89661524 Msa0385930:CDS 55.0%
TGGATGTGGGACTTGGGGTT+GGG - chr3_1:89662192-89662211 None:intergenic 55.0%
TCTCCTGGATGTGGGACTTG+GGG - chr3_1:89662197-89662216 None:intergenic 55.0%
GGAGGAAGAGGCCATTAAGG+TGG + chr3_1:89662419-89662438 Msa0385930:CDS 55.0%
GAAGAGGCCATTAAGGTGGG+AGG + chr3_1:89662423-89662442 Msa0385930:CDS 55.0%
GGTCTTGAGTAGCATGGCTG+TGG - chr3_1:89662455-89662474 None:intergenic 55.0%
TTCAAGACCAGGCGACCTAC+GGG - chr3_1:89662618-89662637 None:intergenic 55.0%
GTTCAAGACCAGGCGACCTA+CGG - chr3_1:89662619-89662638 None:intergenic 55.0%
!! GCACACTTGGGAGCATTAGC+AGG - chr3_1:89662804-89662823 None:intergenic 55.0%
CAAGATCGGTATCGCTCTCC+AGG - chr3_1:89663613-89663632 None:intergenic 55.0%
CTGGAGAGCGATACCGATCT+TGG + chr3_1:89663611-89663630 Msa0385930:CDS 55.0%
GGATTTCATGGGTGACGCGT+GGG - chr3_1:89663777-89663796 None:intergenic 55.0%
CCCATGAAATCCGCAGCATC+TGG + chr3_1:89663785-89663804 Msa0385930:CDS 55.0%
TTGCACTTGCTCCCCTGGCA+TGG - chr3_1:89661360-89661379 None:intergenic 60.0%
TGCCAGGGGAGCAAGTGCAA+AGG + chr3_1:89661360-89661379 Msa0385930:CDS 60.0%
GCCAGGGGAGCAAGTGCAAA+GGG + chr3_1:89661361-89661380 Msa0385930:CDS 60.0%
ACCCTTTGCACTTGCTCCCC+TGG - chr3_1:89661365-89661384 None:intergenic 60.0%
CTGGATGTGGGACTTGGGGT+TGG - chr3_1:89662193-89662212 None:intergenic 60.0%
CAACCCCAAGTCCCACATCC+AGG + chr3_1:89662191-89662210 Msa0385930:CDS 60.0%
ACCTGTCGGGTGCCCAAGAT+CGG - chr3_1:89663627-89663646 None:intergenic 60.0%
TTCATGGGTGACGCGTGGGT+CGG - chr3_1:89663773-89663792 None:intergenic 60.0%
CGGATTTCATGGGTGACGCG+TGG - chr3_1:89663778-89663797 None:intergenic 60.0%
! AGGCGACCTACGGGCTGAAG+GGG - chr3_1:89662609-89662628 None:intergenic 65.0%
! CAGGCGACCTACGGGCTGAA+GGG - chr3_1:89662610-89662629 None:intergenic 65.0%
ACCGATCTTGGGCACCCGAC+AGG + chr3_1:89663623-89663642 Msa0385930:CDS 65.0%
! CCAGGCGACCTACGGGCTGA+AGG - chr3_1:89662611-89662630 None:intergenic 70.0%
CCTTCAGCCCGTAGGTCGCC+TGG + chr3_1:89662608-89662627 Msa0385930:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 89659779 89664371 89659779 ID=Msa0385930;Name=Msa0385930
chr3_1 mRNA 89659779 89664371 89659779 ID=Msa0385930-mRNA-1;Parent=Msa0385930;Name=Msa0385930-mRNA-1;_AED=0.09;_eAED=0.09;_QI=189|1|1|1|1|1|8|378|492
chr3_1 exon 89659779 89659982 89659779 ID=Msa0385930-mRNA-1:exon:24463;Parent=Msa0385930-mRNA-1
chr3_1 exon 89660157 89660253 89660157 ID=Msa0385930-mRNA-1:exon:24464;Parent=Msa0385930-mRNA-1
chr3_1 exon 89661278 89661555 89661278 ID=Msa0385930-mRNA-1:exon:24465;Parent=Msa0385930-mRNA-1
chr3_1 exon 89662102 89662878 89662102 ID=Msa0385930-mRNA-1:exon:24466;Parent=Msa0385930-mRNA-1
chr3_1 exon 89663031 89663120 89663031 ID=Msa0385930-mRNA-1:exon:24467;Parent=Msa0385930-mRNA-1
chr3_1 exon 89663577 89663644 89663577 ID=Msa0385930-mRNA-1:exon:24468;Parent=Msa0385930-mRNA-1
chr3_1 exon 89663732 89663825 89663732 ID=Msa0385930-mRNA-1:exon:24469;Parent=Msa0385930-mRNA-1
chr3_1 exon 89663934 89664371 89663934 ID=Msa0385930-mRNA-1:exon:24470;Parent=Msa0385930-mRNA-1
chr3_1 five_prime_UTR 89659779 89659967 89659779 ID=Msa0385930-mRNA-1:five_prime_utr;Parent=Msa0385930-mRNA-1
chr3_1 CDS 89659968 89659982 89659968 ID=Msa0385930-mRNA-1:cds;Parent=Msa0385930-mRNA-1
chr3_1 CDS 89660157 89660253 89660157 ID=Msa0385930-mRNA-1:cds;Parent=Msa0385930-mRNA-1
chr3_1 CDS 89661278 89661555 89661278 ID=Msa0385930-mRNA-1:cds;Parent=Msa0385930-mRNA-1
chr3_1 CDS 89662102 89662878 89662102 ID=Msa0385930-mRNA-1:cds;Parent=Msa0385930-mRNA-1
chr3_1 CDS 89663031 89663120 89663031 ID=Msa0385930-mRNA-1:cds;Parent=Msa0385930-mRNA-1
chr3_1 CDS 89663577 89663644 89663577 ID=Msa0385930-mRNA-1:cds;Parent=Msa0385930-mRNA-1
chr3_1 CDS 89663732 89663825 89663732 ID=Msa0385930-mRNA-1:cds;Parent=Msa0385930-mRNA-1
chr3_1 CDS 89663934 89663993 89663934 ID=Msa0385930-mRNA-1:cds;Parent=Msa0385930-mRNA-1
chr3_1 three_prime_UTR 89663994 89664371 89663994 ID=Msa0385930-mRNA-1:three_prime_utr;Parent=Msa0385930-mRNA-1
Gene Sequence

>Msa0385930

ATGGATCCATACAAGCACCGTCCATCCAGCGCTTACAATTCTCCTTTCTGGACTACAAATTCCGGTGCACCTGTTTGGAACAACAACTCATCCCTAACCGTTGGATCTAGAGGTCCAATTCTCTTGGAAGATTATCATCTTGTGGAAAAGCTTGCCCAATTTGATAGGGAACGGATCCCAGAACGTGTTGTCCATGCCAGGGGAGCAAGTGCAAAGGGTTTCTTTGAAGTCACACATGATATTTCGCACCTGACTTGTGCAGATTTCCTACGAGCTCCTGGAGTTCAGACACCTGTCATTGTGCGTTTCTCTACTGTCATTCATGAACGTGGCAGCCCTGAAACCTTGAGAGACCCTCGAGGTTTTGCTGTGAAATTCTACACCAGAGAGGGTAACTTTGACCTTGTTGGAAACAACTTTCCTGTCTTCTTCGTTCATGACGGGATGAATTTTCCAGATATGGTCCATGCTCTTAAACCCAACCCCAAGTCCCACATCCAGGAGAATTGGAGAATCCTTGACTTCTTTTCTCACTTTCCAGAAAGCCTTCACATGTTCTCCTTCCTGTTTGATGATGTGGGTGTCCCACAAGATTATAGGCACATGGATGGTTTTGGAGTTAACACATATTCCCTGATCAACAAGGCTGGGAAAGCAGTGTACGTGAAATTTCACTGGAAGCCCACATGTGGTGTGAAGTGTCTGTTGGAGGAAGAGGCCATTAAGGTGGGAGGATCCAACCACAGCCATGCTACTCAAGACCTGTATGATTCAATTGCTGCTGGTAACTATCCTGAGTGGAAACTGTTTGTTCAAACAATAGATCCTGCTCACGAAGACAAATTTGATTTTGACCCACTTGATGTAACTAAGACTTGGCCTGAGGACATTATACCCCTTCAGCCCGTAGGTCGCCTGGTCTTGAACAAGAACATAGACAATTTCTTTGCTGAGAATGAACAACTTGCATTTTGTCCTGCCATTATTGTGCCTGGTGTATATTACTCGGATGATAAGATGCTTCAAACCAGGATTTTCTCTTATGCTGATTCACAGAGGCATAGACTTGGGCCAAACTATCTGCAACTTCCTGCTAATGCTCCCAAGTGTGCTCACCACAACAATCACCATGAGGGTTTCATGAATTTCATTCACAGGGATGAAGAGGTCAATTACTTCCCTTCAAGGCATGATCCTGTTCGTCATGCAGAAAAGGTTCCCATTCCTACTGCTAATTTCTCTGCATGCCGTGAAAAGTGCAATATTCCAAAGCAGAACAACTTCAAGCAGCCTGGAGAGCGATACCGATCTTGGGCACCCGACAGGCAAGATAGATTTCTCCGCAGATGGGTGGATGCTTTATCCGACCCACGCGTCACCCATGAAATCCGCAGCATCTGGATCTCATACTGGTCTCAGGCTGATCGTTCTCTTGGACAAAAGATTGCATCTCATCTGAACATGAGGCCTAGCATTTAA
Protein sequence

>Msa0385930

MDPYKHRPSSAYNSPFWTTNSGAPVWNNNSSLTVGSRGPILLEDYHLVEKLAQFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVHDGMNFPDMVHALKPNPKSHIQENWRILDFFSHFPESLHMFSFLFDDVGVPQDYRHMDGFGVNTYSLINKAGKAVYVKFHWKPTCGVKCLLEEEAIKVGGSNHSHATQDLYDSIAAGNYPEWKLFVQTIDPAHEDKFDFDPLDVTKTWPEDIIPLQPVGRLVLNKNIDNFFAENEQLAFCPAIIVPGVYYSDDKMLQTRIFSYADSQRHRLGPNYLQLPANAPKCAHHNNHHEGFMNFIHRDEEVNYFPSRHDPVRHAEKVPIPTANFSACREKCNIPKQNNFKQPGERYRSWAPDRQDRFLRRWVDALSDPRVTHEIRSIWISYWSQADRSLGQKIASHLNMRPSI*