AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1428230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428230 MtrunA17_Chr1g0211281 93.728 287 5 1 1 274 1 287 0.0 528
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428230 AT2G20920.1 59.864 294 88 7 3 274 2 287 1.95e-105 308

Find 106 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAATCATCTCTCAGTTCT+TGG 0.239865 tig0026321:+50033 Msa1428230:CDS
CTCGTAGCCGGTGCTGTTGT+AGG 0.250905 tig0026321:+49929 Msa1428230:CDS
GTAGATATTGTCCCATTTCT+AGG 0.260172 tig0026321:+49977 Msa1428230:CDS
GTTAGTGAAATCATAATTCT+TGG 0.264371 tig0026321:+50267 Msa1428230:three_prime_UTR
ATGAAATGTAGTTGTTTATC+TGG 0.268008 tig0026321:+50459 Msa1428230:three_prime_UTR
TTATGCTGGGGCTGATGTTC+CGG 0.280484 tig0026321:+48626 Msa1428230:CDS
CTTATCTTGGCTGGTAGCTT+TGG 0.288436 tig0026321:+48651 Msa1428230:CDS
CGAAGAAGAGCCACTAAAAT+AGG 0.315687 tig0026321:-48592 None:intergenic
ACAGTGAAGGCTACTGTTAT+AGG 0.321766 tig0026321:+50152 Msa1428230:three_prime_UTR
GGTCTACAAGCTGGAGTATA+TGG 0.336678 tig0026321:+48552 Msa1428230:CDS
TGATGTTCCGGGACTTATCT+TGG 0.337818 tig0026321:+48638 Msa1428230:CDS
CTGCGAACCGGTGGTGGTCT+TGG 0.339944 tig0026321:-47809 None:intergenic
GAGGAGCGTGGGACCGGTTC+AGG 0.342637 tig0026321:+47895 Msa1428230:CDS
CAGTGAAGGCTACTGTTATA+GGG 0.344613 tig0026321:+50153 Msa1428230:three_prime_UTR
TGAAACTGGTGCTTTCTTCA+TGG 0.383086 tig0026321:-48502 None:intergenic
ATTTCACTAACAAGATCAAC+AGG 0.390058 tig0026321:-50255 None:intergenic
TATGCTGGGGCTGATGTTCC+GGG 0.398811 tig0026321:+48627 Msa1428230:CDS
TGCGAACCGGTGGTGGTCTT+GGG 0.401013 tig0026321:-47808 None:intergenic
AACCGTGGCCGCTACGTAGA+AGG 0.413617 tig0026321:+47855 Msa1428230:CDS
GGGGAGCGTATCCCTAGAAA+TGG 0.415453 tig0026321:-49989 None:intergenic
TCTCTTTACTTAATCTAGAC+AGG 0.417041 tig0026321:+50292 Msa1428230:three_prime_UTR
TCACCTTCCACCAGTGATCT+TGG 0.418919 tig0026321:+48531 Msa1428230:CDS
AAGGCTGTTGTTATAACAAT+AGG 0.421906 tig0026321:+49902 Msa1428230:CDS
TCTACAGCTGATGCGGCCAC+AGG 0.426313 tig0026321:-50187 None:intergenic
GCGCGCGAACTCGCCTGAAC+CGG 0.436685 tig0026321:-47908 None:intergenic
TAGGGTCAGTTGTAGAGAAC+TGG 0.448419 tig0026321:+49948 Msa1428230:CDS
AGTTGTAGAGAACTGGTTGC+AGG 0.463677 tig0026321:+49955 Msa1428230:CDS
TCTACGTAGCGGCCACGGTT+CGG 0.469629 tig0026321:-47852 None:intergenic
CTAAGGTAGACAGGAAAACT+TGG 0.474546 tig0026321:+50067 Msa1428230:exon
GAAAACGCACTGAAGCTGTT+AGG 0.474719 tig0026321:+47962 Msa1428230:CDS
GTTCCGGGACTTATCTTGGC+TGG 0.475158 tig0026321:+48642 Msa1428230:CDS
TCGTAGCCGGTGCTGTTGTA+GGG 0.487487 tig0026321:+49930 Msa1428230:CDS
ATCTTTCCCAAGACCACCAC+CGG 0.487703 tig0026321:+47802 Msa1428230:CDS
GTCAACGAGGAGCGTGGGAC+CGG 0.488203 tig0026321:+47889 Msa1428230:CDS
AGGTTAACTCAGCGGCGAGC+AGG 0.492386 tig0026321:+48390 Msa1428230:CDS
CCGCATCAGCTGTAGAGAAC+TGG 0.492954 tig0026321:+50194 Msa1428230:three_prime_UTR
TACTGTTATAGGGGTATAGC+TGG 0.493977 tig0026321:+50163 Msa1428230:three_prime_UTR
AAGATGAACCGGCAGAGATA+CGG 0.494662 tig0026321:-47784 None:intergenic
ACTTCGCTAACAACAGCAGC+AGG 0.498483 tig0026321:-50010 None:intergenic
GAAGGTGACTCAATTGAAAC+TGG 0.499493 tig0026321:-48516 None:intergenic
GAGATACGGTCGGACCGGAC+GGG 0.499884 tig0026321:-47770 None:intergenic
GAGGCATTGAACTATTAGCC+TGG 0.508666 tig0026321:-48464 None:intergenic
CATTTGCATGATCATGTCCA+AGG 0.516855 tig0026321:+50125 Msa1428230:three_prime_UTR
CTAATAGTTCAATGCCTCAA+TGG 0.518261 tig0026321:+48469 Msa1428230:CDS
TGTAAAACGTGTTCAGTCCC+AGG 0.519566 tig0026321:+48446 Msa1428230:CDS
TAGATATTGTCCCATTTCTA+GGG 0.520925 tig0026321:+49978 Msa1428230:CDS
CTCAGCACCGTTCGAGATGT+CGG 0.522136 tig0026321:+47937 Msa1428230:CDS
TCTTGGTTTCGCTATACCTA+AGG 0.523449 tig0026321:+50050 Msa1428230:CDS
CCTTGTATCAAAAGCAAACA+TGG 0.523516 tig0026321:+50327 Msa1428230:three_prime_UTR
TGGTCTTGGGAAAGATGAAC+CGG 0.528342 tig0026321:-47795 None:intergenic
ACTGAAGCTGTTAGGTGTAT+CGG 0.529175 tig0026321:+47970 Msa1428230:CDS
TCGCTATACCTAAGGTAGAC+AGG 0.529570 tig0026321:+50058 Msa1428230:exon
CGGTCCGACCGTATCTCTGC+CGG 0.529633 tig0026321:+47776 Msa1428230:CDS
TCAGCCCCAGCATAACCTGC+AGG 0.529775 tig0026321:-48618 None:intergenic
GCTGTTGTTATAACAATAGG+AGG 0.530149 tig0026321:+49905 Msa1428230:CDS
GACCGGACGGGGATAGTAGC+TGG 0.530833 tig0026321:-47758 None:intergenic
AACTGGTGCTTTCTTCATGG+TGG 0.533216 tig0026321:-48499 None:intergenic
ACGAGACTGCGAACCGGTGG+TGG 0.533492 tig0026321:-47815 None:intergenic
ACAATAGGAGGGCTCGTAGC+CGG 0.533690 tig0026321:+49917 Msa1428230:CDS
CAGCCCCAGCATAACCTGCA+GGG 0.534202 tig0026321:-48617 None:intergenic
AGTGATCTTGGTCTACAAGC+TGG 0.534395 tig0026321:+48543 Msa1428230:CDS
CACTCGTCAACGAGGAGCGT+GGG 0.536752 tig0026321:+47884 Msa1428230:CDS
CGGCAGAGATACGGTCGGAC+CGG 0.541076 tig0026321:-47775 None:intergenic
TAGCCTTCACTGTCAACCCT+TGG 0.542711 tig0026321:-50142 None:intergenic
GGCGCGAAGTATATCATCAA+AGG 0.548559 tig0026321:-48002 None:intergenic
AGAGATACGGTCGGACCGGA+CGG 0.551833 tig0026321:-47771 None:intergenic
TGGAGTATATGGTGCACTGA+TGG 0.556326 tig0026321:+48563 Msa1428230:CDS
AGGCATTGAACTATTAGCCT+GGG 0.559812 tig0026321:-48463 None:intergenic
GGCCACGGTTCGGTGAGGAT+CGG 0.561057 tig0026321:-47842 None:intergenic
CACCTTCTACGTAGCGGCCA+CGG 0.561943 tig0026321:-47857 None:intergenic
GGGAGCGTATCCCTAGAAAT+GGG 0.562434 tig0026321:-49988 None:intergenic
CACCAGCTACTATCCCCGTC+CGG 0.566811 tig0026321:+47756 Msa1428230:CDS
AGCTTGTAGACCAAGATCAC+TGG 0.567895 tig0026321:-48541 None:intergenic
AGATACGGTCGGACCGGACG+GGG 0.570930 tig0026321:-47769 None:intergenic
CTACCAGCCAAGATAAGTCC+CGG 0.574753 tig0026321:-48645 None:intergenic
CTACAGCTGATGCGGCCACA+GGG 0.576147 tig0026321:-50186 None:intergenic
AACTGACCCTACAACAGCAC+CGG 0.576918 tig0026321:-49936 None:intergenic
ATTTGCATGATCATGTCCAA+GGG 0.578012 tig0026321:+50126 Msa1428230:three_prime_UTR
AGCCCCAGCATAACCTGCAG+GGG 0.587242 tig0026321:-48616 None:intergenic
GGAGTATATGGTGCACTGAT+GGG 0.588659 tig0026321:+48564 Msa1428230:CDS
GACGGGGATAGTAGCTGGTG+TGG 0.596353 tig0026321:-47753 None:intergenic
GGTTTAACGAGACTGCGAAC+CGG 0.597083 tig0026321:-47821 None:intergenic
TGTCCAAGGGTTGACAGTGA+AGG 0.597959 tig0026321:+50139 Msa1428230:three_prime_UTR
TTCGCTAACAACAGCAGCAG+GGG 0.605157 tig0026321:-50008 None:intergenic
AGTGAAGGCTACTGTTATAG+GGG 0.611438 tig0026321:+50154 Msa1428230:three_prime_UTR
GCACTCGTCAACGAGGAGCG+TGG 0.612531 tig0026321:+47883 Msa1428230:CDS
GCCCCAGCATAACCTGCAGG+GGG 0.620500 tig0026321:-48615 None:intergenic
ATGACATGTTGCTTATGCAG+AGG 0.621680 tig0026321:+48370 Msa1428230:CDS
TTAATCTAGACAGGAAAACA+TGG 0.627995 tig0026321:+50301 Msa1428230:three_prime_UTR
CGTGGCCGCTACGTAGAAGG+TGG 0.636433 tig0026321:+47858 Msa1428230:CDS
CTTCGCTAACAACAGCAGCA+GGG 0.636870 tig0026321:-50009 None:intergenic
CCAGTTCTCTACAGCTGATG+CGG 0.638669 tig0026321:-50194 None:intergenic
ATGGTGGATTGCATCCATTG+AGG 0.641012 tig0026321:-48483 None:intergenic
TTGTAGACCAAGATCACTGG+TGG 0.661997 tig0026321:-48538 None:intergenic
AGACCAAGATCACTGGTGGA+AGG 0.664781 tig0026321:-48534 None:intergenic
AACCGATCCTCACCGAACCG+TGG 0.674182 tig0026321:+47840 Msa1428230:CDS
CTGTTGTTATAACAATAGGA+GGG 0.684835 tig0026321:+49906 Msa1428230:CDS
AAGCTGTTAGGTGTATCGGA+AGG 0.687616 tig0026321:+47974 Msa1428230:CDS
TTAACGAGACTGCGAACCGG+TGG 0.689656 tig0026321:-47818 None:intergenic
GTAGCGGCCACGGTTCGGTG+AGG 0.697717 tig0026321:-47847 None:intergenic
TTATGCAGAGGTTAACTCAG+CGG 0.705557 tig0026321:+48382 Msa1428230:CDS
TGCTTCCACCTTCTACGTAG+CGG 0.712698 tig0026321:-47863 None:intergenic
TAGGGGTATAGCTGGCCCTG+TGG 0.725216 tig0026321:+50171 Msa1428230:three_prime_UTR
GGTGGAAGCACTCGTCAACG+AGG 0.726269 tig0026321:+47876 Msa1428230:CDS
TGAACCGGCAGAGATACGGT+CGG 0.737243 tig0026321:-47780 None:intergenic
TTTCACTAACAAGATCAACA+GGG 0.765605 tig0026321:-50254 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTGATATTAAAAGTTT+TGG + tig0026321:49312-49331 Msa1428230:intron 15.0%
!! AATAAAAGTAAGCATTTAGA+TGG + tig0026321:48804-48823 Msa1428230:intron 20.0%
!! ATTATGAATGTCTACAAAAT+TGG - tig0026321:49172-49191 None:intergenic 20.0%
!!! TTTTGTAGACATTCATAATA+AGG + tig0026321:49173-49192 Msa1428230:intron 20.0%
!!! ACTTTTAATATCAAAAGTCT+GGG - tig0026321:49310-49329 None:intergenic 20.0%
!!! AACTTTTAATATCAAAAGTC+TGG - tig0026321:49311-49330 None:intergenic 20.0%
!! AAGTTGTTTATCTTAACAAA+TGG + tig0026321:49445-49464 Msa1428230:intron 20.0%
!!! TTTAACTTGAAGATAGAATT+TGG + tig0026321:49655-49674 Msa1428230:intron 20.0%
!!! TTAACTTGAAGATAGAATTT+GGG + tig0026321:49656-49675 Msa1428230:intron 20.0%
!! AAGCTAAAAATCAATTCTAA+AGG - tig0026321:49689-49708 None:intergenic 20.0%
! AAATAGCTTATAGCTTATAC+AGG - tig0026321:48166-48185 None:intergenic 25.0%
! TAATTCTATACACCTATTGA+TGG + tig0026321:48315-48334 Msa1428230:intron 25.0%
! ACCAAAAAGAATGTTAAGTT+AGG + tig0026321:48693-48712 Msa1428230:CDS 25.0%
!! ACCTAACTTAACATTCTTTT+TGG - tig0026321:48697-48716 None:intergenic 25.0%
! AAAGAATGTTAAGTTAGGTA+AGG + tig0026321:48698-48717 Msa1428230:intron 25.0%
! ACATTGATATTGTAATGCAA+TGG + tig0026321:48734-48753 Msa1428230:intron 25.0%
!! TAGAACTTTTCTTTCAACAA+AGG - tig0026321:48895-48914 None:intergenic 25.0%
! AATGTACAGTTTCAATAAGA+GGG - tig0026321:49045-49064 None:intergenic 25.0%
! AAATGTACAGTTTCAATAAG+AGG - tig0026321:49046-49065 None:intergenic 25.0%
! AGAAATGAAGTCTATTCAAT+AGG - tig0026321:49279-49298 None:intergenic 25.0%
!!! AGGGTTTTATTTACCTAATA+TGG + tig0026321:49386-49405 Msa1428230:intron 25.0%
!!! GAGATTGTTTCTGTATAAAA+TGG + tig0026321:49408-49427 Msa1428230:intron 25.0%
! TAGTTTAAGAAAGAGGTAAA+CGG - tig0026321:49517-49536 None:intergenic 25.0%
! CAAAATCAATTATACACCTT+TGG - tig0026321:49586-49605 None:intergenic 25.0%
!!! CAAAGGTGTATAATTGATTT+TGG + tig0026321:49584-49603 Msa1428230:intron 25.0%
!!! ATAATTGATTTTGGCATGTT+TGG + tig0026321:49593-49612 Msa1428230:intron 25.0%
!! CTTCAAGTTAAAATAAATCC+TGG - tig0026321:49647-49666 None:intergenic 25.0%
! TAACTTGAAGATAGAATTTG+GGG + tig0026321:49657-49676 Msa1428230:intron 25.0%
! GTTAGTGAAATCATAATTCT+TGG + tig0026321:50267-50286 Msa1428230:three_prime_UTR 25.0%
! ATGAAATGTAGTTGTTTATC+TGG + tig0026321:50459-50478 Msa1428230:three_prime_UTR 25.0%
TAACCTGAGAAATAGTTTCT+TGG - tig0026321:48060-48079 None:intergenic 30.0%
CAAATCAACAACAAGTAAAG+TGG - tig0026321:48085-48104 None:intergenic 30.0%
TACATGAATTTCAAGACCAT+GGG - tig0026321:48225-48244 None:intergenic 30.0%
! TGGAATTTCTGTGCATTTTT+AGG + tig0026321:48335-48354 Msa1428230:intron 30.0%
!! TGGAATTTTTGTTTCATGAG+TGG + tig0026321:48754-48773 Msa1428230:intron 30.0%
!! ATTCGTATTGACTTGTATCA+TGG + tig0026321:48781-48800 Msa1428230:intron 30.0%
TCAGTTTCACTAAAGTTATG+TGG + tig0026321:48949-48968 Msa1428230:intron 30.0%
! TCTAATGGATCTAATTCATG+TGG - tig0026321:48978-48997 None:intergenic 30.0%
! CCTATTGGTTAAAGTTCTAA+TGG - tig0026321:48993-49012 None:intergenic 30.0%
CCATTAGAACTTTAACCAAT+AGG + tig0026321:48990-49009 Msa1428230:intron 30.0%
ATGTACAGTTTCAATAAGAG+GGG - tig0026321:49044-49063 None:intergenic 30.0%
CTTATTGTTTCGACAAAGAA+TGG - tig0026321:49251-49270 None:intergenic 30.0%
CATTCTTTGTCGAAACAATA+AGG + tig0026321:49249-49268 Msa1428230:intron 30.0%
ATGAAGTCTATTCAATAGGT+TGG - tig0026321:49275-49294 None:intergenic 30.0%
ACAGAAACAATCTCCATATT+AGG - tig0026321:49402-49421 None:intergenic 30.0%
CTGAGAATAGTTTAAGAAAG+AGG - tig0026321:49524-49543 None:intergenic 30.0%
CAAGTTAAAATAAATCCTGG+AGG - tig0026321:49644-49663 None:intergenic 30.0%
AAAGCTATTCAGATGAAAGT+AGG - tig0026321:49728-49747 None:intergenic 30.0%
CCAAAAGGATTAAGTGTATT+TGG - tig0026321:49812-49831 None:intergenic 30.0%
! CCAAATACACTTAATCCTTT+TGG + tig0026321:49809-49828 Msa1428230:intron 30.0%
AAATGCTATGCTAATCCAAA+AGG - tig0026321:49827-49846 None:intergenic 30.0%
! ATAGAAAAGGGAAGTGTAAA+AGG - tig0026321:49872-49891 None:intergenic 30.0%
AAGGCTGTTGTTATAACAAT+AGG + tig0026321:49902-49921 Msa1428230:CDS 30.0%
CTGTTGTTATAACAATAGGA+GGG + tig0026321:49906-49925 Msa1428230:CDS 30.0%
TAGATATTGTCCCATTTCTA+GGG + tig0026321:49978-49997 Msa1428230:CDS 30.0%
! TGTAGAAATTGTCCCATTTT+TGG + tig0026321:50221-50240 Msa1428230:three_prime_UTR 30.0%
!! GTAGAAATTGTCCCATTTTT+GGG + tig0026321:50222-50241 Msa1428230:three_prime_UTR 30.0%
TTTCACTAACAAGATCAACA+GGG - tig0026321:50257-50276 None:intergenic 30.0%
ATTTCACTAACAAGATCAAC+AGG - tig0026321:50258-50277 None:intergenic 30.0%
TCTCTTTACTTAATCTAGAC+AGG + tig0026321:50292-50311 Msa1428230:three_prime_UTR 30.0%
TTAATCTAGACAGGAAAACA+TGG + tig0026321:50301-50320 Msa1428230:three_prime_UTR 30.0%
! ATCATACCTCAAGCATTTTT+AGG + tig0026321:50402-50421 Msa1428230:three_prime_UTR 30.0%
TTACATCCTAAAAATGCTTG+AGG - tig0026321:50411-50430 None:intergenic 30.0%
! AAGATGCAGATTTTATGTTC+AGG + tig0026321:50515-50534 Msa1428230:three_prime_UTR 30.0%
! AGATGCAGATTTTATGTTCA+GGG + tig0026321:50516-50535 Msa1428230:three_prime_UTR 30.0%
! TGACCAAGAAACTATTTCTC+AGG + tig0026321:48054-48073 Msa1428230:intron 35.0%
GTACATGAATTTCAAGACCA+TGG - tig0026321:48226-48245 None:intergenic 35.0%
! ACTGAAATTGTGAGGTATTC+AGG - tig0026321:48263-48282 None:intergenic 35.0%
AACTAGAGACTGAAATTGTG+AGG - tig0026321:48271-48290 None:intergenic 35.0%
TGCACAGAAATTCCATCAAT+AGG - tig0026321:48330-48349 None:intergenic 35.0%
CTAATAGTTCAATGCCTCAA+TGG + tig0026321:48469-48488 Msa1428230:CDS 35.0%
!! ATGGGTTTGACCTATTTTAG+TGG + tig0026321:48582-48601 Msa1428230:CDS 35.0%
!! CTTTTTGGTCATGAAGTACA+AGG - tig0026321:48682-48701 None:intergenic 35.0%
AAGCATTTAGATGGCCATAA+TGG + tig0026321:48813-48832 Msa1428230:intron 35.0%
AGCATTTAGATGGCCATAAT+GGG + tig0026321:48814-48833 Msa1428230:intron 35.0%
TTCAACAAAGGCAAACATGA+AGG - tig0026321:48883-48902 None:intergenic 35.0%
CTTTAACCAATAGGAGATAG+TGG + tig0026321:48999-49018 Msa1428230:intron 35.0%
TTCTAACCACTATCTCCTAT+TGG - tig0026321:49008-49027 None:intergenic 35.0%
TTCTTATACTGCTAATCTGC+TGG + tig0026321:49337-49356 Msa1428230:intron 35.0%
! ACAAATGGTACTTCTAGTTG+TGG + tig0026321:49460-49479 Msa1428230:intron 35.0%
! CAAATGGTACTTCTAGTTGT+GGG + tig0026321:49461-49480 Msa1428230:intron 35.0%
!!! TACACCTTTGGAGTCAATTT+TGG - tig0026321:49574-49593 None:intergenic 35.0%
! TTGGCATGTTTGGATGTTTT+CGG + tig0026321:49603-49622 Msa1428230:intron 35.0%
!! ATAGAATTGATTTTGCCTCC+AGG + tig0026321:49626-49645 Msa1428230:intron 35.0%
!! ATTAAGTGTATTTGGCTCTG+CGG - tig0026321:49804-49823 None:intergenic 35.0%
!!! TTCCCTTTTCTATTTCTGCA+GGG + tig0026321:49879-49898 Msa1428230:intron 35.0%
TTCCCTGCAGAAATAGAAAA+GGG - tig0026321:49884-49903 None:intergenic 35.0%
GCTGTTGTTATAACAATAGG+AGG + tig0026321:49905-49924 Msa1428230:CDS 35.0%
GTAGATATTGTCCCATTTCT+AGG + tig0026321:49977-49996 Msa1428230:CDS 35.0%
CATAATCATCTCTCAGTTCT+TGG + tig0026321:50033-50052 Msa1428230:CDS 35.0%
ATTTGCATGATCATGTCCAA+GGG + tig0026321:50126-50145 Msa1428230:three_prime_UTR 35.0%
!! CCATGTTTGCTTTTGATACA+AGG - tig0026321:50330-50349 None:intergenic 35.0%
CCTTGTATCAAAAGCAAACA+TGG + tig0026321:50327-50346 Msa1428230:three_prime_UTR 35.0%
! TTTTCAACCGACATCTCGAA+CGG - tig0026321:47947-47966 None:intergenic 40.0%
ACTGAAGCTGTTAGGTGTAT+CGG + tig0026321:47970-47989 Msa1428230:CDS 40.0%
! AGAAGCAACGATGGAGTTTT+TGG - tig0026321:48026-48045 None:intergenic 40.0%
ATCTTTGCAAGAAGCAACGA+TGG - tig0026321:48035-48054 None:intergenic 40.0%
!!! ATGCTTGAGTTTTTTGCCCA+TGG + tig0026321:48206-48225 Msa1428230:intron 40.0%
! TGAGGTATTCAGGACATCAA+GGG - tig0026321:48253-48272 None:intergenic 40.0%
!!! TTCTGTGCATTTTTAGGTCG+AGG + tig0026321:48341-48360 Msa1428230:intron 40.0%
! ATGACATGTTGCTTATGCAG+AGG + tig0026321:48370-48389 Msa1428230:CDS 40.0%
TTATGCAGAGGTTAACTCAG+CGG + tig0026321:48382-48401 Msa1428230:CDS 40.0%
!! AGGCATTGAACTATTAGCCT+GGG - tig0026321:48466-48485 None:intergenic 40.0%
TGAAACTGGTGCTTTCTTCA+TGG - tig0026321:48505-48524 None:intergenic 40.0%
GAAGGTGACTCAATTGAAAC+TGG - tig0026321:48519-48538 None:intergenic 40.0%
CGAAGAAGAGCCACTAAAAT+AGG - tig0026321:48595-48614 None:intergenic 40.0%
! ATTTAGATGGCCATAATGGG+TGG + tig0026321:48817-48836 Msa1428230:intron 40.0%
!! TTTAGATGGCCATAATGGGT+GGG + tig0026321:48818-48837 Msa1428230:intron 40.0%
TGAAGACACAAAGCAATGAG+TGG + tig0026321:49081-49100 Msa1428230:intron 40.0%
ATGAGTGGTATGAGTATGCA+AGG + tig0026321:49096-49115 Msa1428230:intron 40.0%
AATCTGCTGGATATTACTGC+TGG + tig0026321:49350-49369 Msa1428230:intron 40.0%
! AGAGCCAAAATTGACTCCAA+AGG + tig0026321:49567-49586 Msa1428230:intron 40.0%
! GAAAAGGGAAGTGTAAAAGG+AGG - tig0026321:49869-49888 None:intergenic 40.0%
!!! CTTCCCTTTTCTATTTCTGC+AGG + tig0026321:49878-49897 Msa1428230:intron 40.0%
CTTCCCTGCAGAAATAGAAA+AGG - tig0026321:49885-49904 None:intergenic 40.0%
!!! CTTTTCTATTTCTGCAGGGA+AGG + tig0026321:49883-49902 Msa1428230:intron 40.0%
TCTTGGTTTCGCTATACCTA+AGG + tig0026321:50050-50069 Msa1428230:CDS 40.0%
! CAAGTTTTCCTGTCTACCTT+AGG - tig0026321:50069-50088 None:intergenic 40.0%
CTAAGGTAGACAGGAAAACT+TGG + tig0026321:50067-50086 Msa1428230:exon 40.0%
CATTTGCATGATCATGTCCA+AGG + tig0026321:50125-50144 Msa1428230:three_prime_UTR 40.0%
ACAGTGAAGGCTACTGTTAT+AGG + tig0026321:50152-50171 Msa1428230:three_prime_UTR 40.0%
CAGTGAAGGCTACTGTTATA+GGG + tig0026321:50153-50172 Msa1428230:three_prime_UTR 40.0%
AGTGAAGGCTACTGTTATAG+GGG + tig0026321:50154-50173 Msa1428230:three_prime_UTR 40.0%
! TACTGTTATAGGGGTATAGC+TGG + tig0026321:50163-50182 Msa1428230:three_prime_UTR 40.0%
!! ATTGTCCCATTTTTGGGCAT+AGG + tig0026321:50228-50247 Msa1428230:three_prime_UTR 40.0%
GGAATCCTATGCCCAAAAAT+GGG - tig0026321:50236-50255 None:intergenic 40.0%
AAGATGAACCGGCAGAGATA+CGG - tig0026321:47787-47806 None:intergenic 45.0%
! TGGTCTTGGGAAAGATGAAC+CGG - tig0026321:47798-47817 None:intergenic 45.0%
GAAAACGCACTGAAGCTGTT+AGG + tig0026321:47962-47981 Msa1428230:CDS 45.0%
AAGCTGTTAGGTGTATCGGA+AGG + tig0026321:47974-47993 Msa1428230:CDS 45.0%
GGCGCGAAGTATATCATCAA+AGG - tig0026321:48005-48024 None:intergenic 45.0%
! GAGGTATTCAGGACATCAAG+GGG - tig0026321:48252-48271 None:intergenic 45.0%
! GTGAGGTATTCAGGACATCA+AGG - tig0026321:48254-48273 None:intergenic 45.0%
TGTAAAACGTGTTCAGTCCC+AGG + tig0026321:48446-48465 Msa1428230:CDS 45.0%
!! GAGGCATTGAACTATTAGCC+TGG - tig0026321:48467-48486 None:intergenic 45.0%
!! ATGGTGGATTGCATCCATTG+AGG - tig0026321:48486-48505 None:intergenic 45.0%
AACTGGTGCTTTCTTCATGG+TGG - tig0026321:48502-48521 None:intergenic 45.0%
TTGTAGACCAAGATCACTGG+TGG - tig0026321:48541-48560 None:intergenic 45.0%
AGCTTGTAGACCAAGATCAC+TGG - tig0026321:48544-48563 None:intergenic 45.0%
AGTGATCTTGGTCTACAAGC+TGG + tig0026321:48543-48562 Msa1428230:CDS 45.0%
GGTCTACAAGCTGGAGTATA+TGG + tig0026321:48552-48571 Msa1428230:CDS 45.0%
TGGAGTATATGGTGCACTGA+TGG + tig0026321:48563-48582 Msa1428230:CDS 45.0%
! GGAGTATATGGTGCACTGAT+GGG + tig0026321:48564-48583 Msa1428230:CDS 45.0%
TGATGTTCCGGGACTTATCT+TGG + tig0026321:48638-48657 Msa1428230:CDS 45.0%
CTTATCTTGGCTGGTAGCTT+TGG + tig0026321:48651-48670 Msa1428230:CDS 45.0%
TTGGTGCACTGTATGATGCA+AGG - tig0026321:49153-49172 None:intergenic 45.0%
!! TGCTGGTGTCTTTGAAGTGA+GGG + tig0026321:49367-49386 Msa1428230:intron 45.0%
! ATGGTACTTCTAGTTGTGGG+TGG + tig0026321:49464-49483 Msa1428230:intron 45.0%
TAGGGTCAGTTGTAGAGAAC+TGG + tig0026321:49948-49967 Msa1428230:CDS 45.0%
AGTTGTAGAGAACTGGTTGC+AGG + tig0026321:49955-49974 Msa1428230:CDS 45.0%
TCGCTATACCTAAGGTAGAC+AGG + tig0026321:50058-50077 Msa1428230:exon 45.0%
GGGAATCCTATGCCCAAAAA+TGG - tig0026321:50237-50256 None:intergenic 45.0%
! GCAGATTTTATGTTCAGGGC+TGG + tig0026321:50520-50539 Msa1428230:three_prime_UTR 45.0%
ATCTTTCCCAAGACCACCAC+CGG + tig0026321:47802-47821 Msa1428230:CDS 50.0%
GGTTTAACGAGACTGCGAAC+CGG - tig0026321:47824-47843 None:intergenic 50.0%
TGCTTCCACCTTCTACGTAG+CGG - tig0026321:47866-47885 None:intergenic 50.0%
TCACCTTCCACCAGTGATCT+TGG + tig0026321:48531-48550 Msa1428230:CDS 50.0%
AGACCAAGATCACTGGTGGA+AGG - tig0026321:48537-48556 None:intergenic 50.0%
TTATGCTGGGGCTGATGTTC+CGG + tig0026321:48626-48645 Msa1428230:CDS 50.0%
CTACCAGCCAAGATAAGTCC+CGG - tig0026321:48648-48667 None:intergenic 50.0%
TCCTACTCTCCCACCCATTA+TGG - tig0026321:48830-48849 None:intergenic 50.0%
!! CTGCTGGTGTCTTTGAAGTG+AGG + tig0026321:49366-49385 Msa1428230:intron 50.0%
AACTGACCCTACAACAGCAC+CGG - tig0026321:49939-49958 None:intergenic 50.0%
! GGGAGCGTATCCCTAGAAAT+GGG - tig0026321:49991-50010 None:intergenic 50.0%
TTCGCTAACAACAGCAGCAG+GGG - tig0026321:50011-50030 None:intergenic 50.0%
CTTCGCTAACAACAGCAGCA+GGG - tig0026321:50012-50031 None:intergenic 50.0%
ACTTCGCTAACAACAGCAGC+AGG - tig0026321:50013-50032 None:intergenic 50.0%
TGTCCAAGGGTTGACAGTGA+AGG + tig0026321:50139-50158 Msa1428230:three_prime_UTR 50.0%
TAGCCTTCACTGTCAACCCT+TGG - tig0026321:50145-50164 None:intergenic 50.0%
CCAGTTCTCTACAGCTGATG+CGG - tig0026321:50197-50216 None:intergenic 50.0%
TGAACCGGCAGAGATACGGT+CGG - tig0026321:47783-47802 None:intergenic 55.0%
TTAACGAGACTGCGAACCGG+TGG - tig0026321:47821-47840 None:intergenic 55.0%
CTCAGCACCGTTCGAGATGT+CGG + tig0026321:47937-47956 Msa1428230:CDS 55.0%
TATGCTGGGGCTGATGTTCC+GGG + tig0026321:48627-48646 Msa1428230:CDS 55.0%
GTTCCGGGACTTATCTTGGC+TGG + tig0026321:48642-48661 Msa1428230:CDS 55.0%
!! GCCATAATGGGTGGGAGAGT+AGG + tig0026321:48826-48845 Msa1428230:intron 55.0%
ACAATAGGAGGGCTCGTAGC+CGG + tig0026321:49917-49936 Msa1428230:CDS 55.0%
!! TCGTAGCCGGTGCTGTTGTA+GGG + tig0026321:49930-49949 Msa1428230:CDS 55.0%
! GGGGAGCGTATCCCTAGAAA+TGG - tig0026321:49992-50011 None:intergenic 55.0%
CCGCATCAGCTGTAGAGAAC+TGG + tig0026321:50194-50213 Msa1428230:three_prime_UTR 55.0%
GACGGGGATAGTAGCTGGTG+TGG - tig0026321:47756-47775 None:intergenic 60.0%
CACCAGCTACTATCCCCGTC+CGG + tig0026321:47756-47775 Msa1428230:CDS 60.0%
AGAGATACGGTCGGACCGGA+CGG - tig0026321:47774-47793 None:intergenic 60.0%
! TGCGAACCGGTGGTGGTCTT+GGG - tig0026321:47811-47830 None:intergenic 60.0%
AACCGATCCTCACCGAACCG+TGG + tig0026321:47840-47859 Msa1428230:CDS 60.0%
TCTACGTAGCGGCCACGGTT+CGG - tig0026321:47855-47874 None:intergenic 60.0%
AACCGTGGCCGCTACGTAGA+AGG + tig0026321:47855-47874 Msa1428230:CDS 60.0%
CACCTTCTACGTAGCGGCCA+CGG - tig0026321:47860-47879 None:intergenic 60.0%
!! GGTGGAAGCACTCGTCAACG+AGG + tig0026321:47876-47895 Msa1428230:CDS 60.0%
! CACTCGTCAACGAGGAGCGT+GGG + tig0026321:47884-47903 Msa1428230:CDS 60.0%
AGGTTAACTCAGCGGCGAGC+AGG + tig0026321:48390-48409 Msa1428230:CDS 60.0%
AGCCCCAGCATAACCTGCAG+GGG - tig0026321:48619-48638 None:intergenic 60.0%
CAGCCCCAGCATAACCTGCA+GGG - tig0026321:48620-48639 None:intergenic 60.0%
TCAGCCCCAGCATAACCTGC+AGG - tig0026321:48621-48640 None:intergenic 60.0%
!! CTCGTAGCCGGTGCTGTTGT+AGG + tig0026321:49929-49948 Msa1428230:CDS 60.0%
! TAGGGGTATAGCTGGCCCTG+TGG + tig0026321:50171-50190 Msa1428230:three_prime_UTR 60.0%
CTACAGCTGATGCGGCCACA+GGG - tig0026321:50189-50208 None:intergenic 60.0%
TCTACAGCTGATGCGGCCAC+AGG - tig0026321:50190-50209 None:intergenic 60.0%
GACCGGACGGGGATAGTAGC+TGG - tig0026321:47761-47780 None:intergenic 65.0%
AGATACGGTCGGACCGGACG+GGG - tig0026321:47772-47791 None:intergenic 65.0%
GAGATACGGTCGGACCGGAC+GGG - tig0026321:47773-47792 None:intergenic 65.0%
CGGCAGAGATACGGTCGGAC+CGG - tig0026321:47778-47797 None:intergenic 65.0%
CGGTCCGACCGTATCTCTGC+CGG + tig0026321:47776-47795 Msa1428230:CDS 65.0%
! CTGCGAACCGGTGGTGGTCT+TGG - tig0026321:47812-47831 None:intergenic 65.0%
ACGAGACTGCGAACCGGTGG+TGG - tig0026321:47818-47837 None:intergenic 65.0%
!! GGCCACGGTTCGGTGAGGAT+CGG - tig0026321:47845-47864 None:intergenic 65.0%
CGTGGCCGCTACGTAGAAGG+TGG + tig0026321:47858-47877 Msa1428230:CDS 65.0%
GCACTCGTCAACGAGGAGCG+TGG + tig0026321:47883-47902 Msa1428230:CDS 65.0%
! GTCAACGAGGAGCGTGGGAC+CGG + tig0026321:47889-47908 Msa1428230:CDS 65.0%
TCGCCCCCTGCAGGTTATGC+TGG + tig0026321:48612-48631 Msa1428230:CDS 65.0%
CGCCCCCTGCAGGTTATGCT+GGG + tig0026321:48613-48632 Msa1428230:CDS 65.0%
GCCCCCTGCAGGTTATGCTG+GGG + tig0026321:48614-48633 Msa1428230:CDS 65.0%
GCCCCAGCATAACCTGCAGG+GGG - tig0026321:48618-48637 None:intergenic 65.0%
!! GTAGCGGCCACGGTTCGGTG+AGG - tig0026321:47850-47869 None:intergenic 70.0%
! GAGGAGCGTGGGACCGGTTC+AGG + tig0026321:47895-47914 Msa1428230:CDS 70.0%
GCGCGCGAACTCGCCTGAAC+CGG - tig0026321:47911-47930 None:intergenic 70.0%
GGCTCTTCTTCGCCCCCTGC+AGG + tig0026321:48603-48622 Msa1428230:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0026321 gene 47746 50550 47746 ID=Msa1428230;Name=Msa1428230
tig0026321 mRNA 47746 50550 47746 ID=Msa1428230-mRNA-1;Parent=Msa1428230;Name=Msa1428230-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0.66|1|1|1|3|475|274
tig0026321 exon 47746 48036 47746 ID=Msa1428230-mRNA-1:exon:5820;Parent=Msa1428230-mRNA-1
tig0026321 exon 48357 48714 48357 ID=Msa1428230-mRNA-1:exon:5821;Parent=Msa1428230-mRNA-1
tig0026321 exon 49900 50550 49900 ID=Msa1428230-mRNA-1:exon:5822;Parent=Msa1428230-mRNA-1
tig0026321 CDS 47746 48036 47746 ID=Msa1428230-mRNA-1:cds;Parent=Msa1428230-mRNA-1
tig0026321 CDS 48357 48714 48357 ID=Msa1428230-mRNA-1:cds;Parent=Msa1428230-mRNA-1
tig0026321 CDS 49900 50075 49900 ID=Msa1428230-mRNA-1:cds;Parent=Msa1428230-mRNA-1
tig0026321 three_prime_UTR 50076 50550 50076 ID=Msa1428230-mRNA-1:three_prime_utr;Parent=Msa1428230-mRNA-1
Gene Sequence

>Msa1428230

ATGGCTGCCACACCAGCTACTATCCCCGTCCGGTCCGACCGTATCTCTGCCGGTTCATCTTTCCCAAGACCACCACCGGTTCGCAGTCTCGTTAAACCGATCCTCACCGAACCGTGGCCGCTACGTAGAAGGTGGAAGCACTCGTCAACGAGGAGCGTGGGACCGGTTCAGGCGAGTTCGCGCGCAGATGACTCAGCACCGTTCGAGATGTCGGTTGAAAACGCACTGAAGCTGTTAGGTGTATCGGAAGGTGCTTCCTTTGATGATATACTTCGCGCCAAAAACTCCATCGTCGAGGCTGCATATGACATGTTGCTTATGCAGAGGTTAACTCAGCGGCGAGCAGGAAAAGTAGTGAGCAGCAGTGTTCGTTATGCTGATGTAAAACGTGTTCAGTCCCAGGCTAATAGTTCAATGCCTCAATGGATGCAATCCACCATGAAGAAAGCACCAGTTTCAATTGAGTCACCTTCCACCAGTGATCTTGGTCTACAAGCTGGAGTATATGGTGCACTGATGGGTTTGACCTATTTTAGTGGCTCTTCTTCGCCCCCTGCAGGTTATGCTGGGGCTGATGTTCCGGGACTTATCTTGGCTGGTAGCTTTGGAGCTTCCTTGTACTTCATGACCAAAAAGAATGTTAAGTTAGGGAAGGCTGTTGTTATAACAATAGGAGGGCTCGTAGCCGGTGCTGTTGTAGGGTCAGTTGTAGAGAACTGGTTGCAGGTAGATATTGTCCCATTTCTAGGGATACGCTCCCCTGCTGCTGTTGTTAGCGAAGTCATAATCATCTCTCAGTTCTTGGTTTCGCTATACCTAAGGTAG

Protein sequence

>Msa1428230

MAATPATIPVRSDRISAGSSFPRPPPVRSLVKPILTEPWPLRRRWKHSSTRSVGPVQASSRADDSAPFEMSVENALKLLGVSEGASFDDILRAKNSIVEAAYDMLLMQRLTQRRAGKVVSSSVRYADVKRVQSQANSSMPQWMQSTMKKAPVSIESPSTSDLGLQAGVYGALMGLTYFSGSSSPPAGYAGADVPGLILAGSFGASLYFMTKKNVKLGKAVVITIGGLVAGAVVGSVVENWLQVDIVPFLGIRSPAAVVSEVIIISQFLVSLYLR*