AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0183310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183310 MtrunA17_Chr1g0211281 97.909 287 6 0 34 320 1 287 0.0 566
Msa0183310 MtrunA17_Chr4g0062111 24.215 223 142 4 67 283 15 216 3.20e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183310 AT2G20920.1 62.245 294 94 6 36 320 2 287 1.03e-112 328

Find 111 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAATCATCTCTCAGTTCT+TGG 0.239865 1_4:+72183966 Msa0183310:CDS
CTCGTAGCCGGTGCTGTTGT+AGG 0.250905 1_4:+72183862 Msa0183310:CDS
GTAGATATTGTCCCATTTCT+AGG 0.260172 1_4:+72183910 Msa0183310:CDS
GTTAGTGAAATCATAATTCT+TGG 0.264371 1_4:+72184200 Msa0183310:three_prime_UTR
ATGAAATGTAGTTGTTTATC+TGG 0.268008 1_4:+72184365 Msa0183310:three_prime_UTR
TTATGCTGGGGCTGATGTTC+CGG 0.280484 1_4:+72182559 Msa0183310:CDS
CTTATCTTGGCTGGTAGCTT+TGG 0.288436 1_4:+72182584 Msa0183310:CDS
ACAGTGAAGGCTACTGTTAT+AGG 0.321766 1_4:+72184085 Msa0183310:three_prime_UTR
AGAAATGTGAGGCTTGAAAT+TGG 0.324760 1_4:-72181640 None:intergenic
GGTCTACAAGCTGGAGTATA+TGG 0.336678 1_4:+72182485 Msa0183310:CDS
TGATGTTCCGGGACTTATCT+TGG 0.337818 1_4:+72182571 Msa0183310:CDS
CGAAGAAGAGCCACTAAAAT+AGG 0.339775 1_4:-72182525 None:intergenic
CTGCGAACCGGTGGTGGTCT+TGG 0.339944 1_4:-72181737 None:intergenic
GAGGAGCGTGGGACCGGTTC+AGG 0.342637 1_4:+72181823 Msa0183310:CDS
CAGTGAAGGCTACTGTTATA+GGG 0.344613 1_4:+72184086 Msa0183310:three_prime_UTR
TGAAACTGGTGCTTTCTTCA+TGG 0.383086 1_4:-72182435 None:intergenic
ATTTCACTAACAAGATCAAC+AGG 0.390058 1_4:-72184188 None:intergenic
TATGCTGGGGCTGATGTTCC+GGG 0.398811 1_4:+72182560 Msa0183310:CDS
TGCGAACCGGTGGTGGTCTT+GGG 0.401013 1_4:-72181736 None:intergenic
TAACCTGAGAAATAGTTTCT+TGG 0.402696 1_4:-72181985 None:intergenic
AACCGTGGCCGCTACGTAGA+AGG 0.413617 1_4:+72181783 Msa0183310:CDS
GGGGAGCGTATCCCTAGAAA+TGG 0.415453 1_4:-72183922 None:intergenic
TCACCTTCCACCAGTGATCT+TGG 0.418919 1_4:+72182464 Msa0183310:CDS
AAGGCTGTTGTTATAACAAT+AGG 0.421906 1_4:+72183835 Msa0183310:CDS
TCTACAGCTGATGCGGCCAC+AGG 0.426313 1_4:-72184120 None:intergenic
GCGCGCGAACTCGCCTGAAC+CGG 0.436685 1_4:-72181836 None:intergenic
TAGGGTCAGTTGTAGAGAAC+TGG 0.448419 1_4:+72183881 Msa0183310:CDS
ACATTTCTTCAACACACAAA+TGG 0.450514 1_4:+72181655 Msa0183310:CDS
AGTTGTAGAGAACTGGTTGC+AGG 0.463677 1_4:+72183888 Msa0183310:CDS
TCTACGTAGCGGCCACGGTT+CGG 0.469629 1_4:-72181780 None:intergenic
TGACCAAGAAACTATTTCTC+AGG 0.473361 1_4:+72181982 Msa0183310:CDS
CTAAGGTAGACAGGAAAACT+TGG 0.474546 1_4:+72184000 Msa0183310:exon
GAAAACGCACTGAAGCTGTT+AGG 0.474719 1_4:+72181890 Msa0183310:CDS
GTTCCGGGACTTATCTTGGC+TGG 0.475158 1_4:+72182575 Msa0183310:CDS
TCGTAGCCGGTGCTGTTGTA+GGG 0.487487 1_4:+72183863 Msa0183310:CDS
ATCTTTCCCAAGACCACCAC+CGG 0.487703 1_4:+72181730 Msa0183310:CDS
GTCAACGAGGAGCGTGGGAC+CGG 0.488203 1_4:+72181817 Msa0183310:CDS
AGGTTAACTCAGCGGCGAGC+AGG 0.492386 1_4:+72182323 Msa0183310:CDS
CCGCATCAGCTGTAGAGAAC+TGG 0.492954 1_4:+72184127 Msa0183310:three_prime_UTR
TACTGTTATAGGGGTATAGC+TGG 0.493977 1_4:+72184096 Msa0183310:three_prime_UTR
CCTTGTATCAAAAGCAAACA+TGG 0.494626 1_4:+72184233 Msa0183310:three_prime_UTR
AAGATGAACCGGCAGAGATA+CGG 0.494662 1_4:-72181712 None:intergenic
ACTTCGCTAACAACAGCAGC+AGG 0.498483 1_4:-72183943 None:intergenic
GAAGGTGACTCAATTGAAAC+TGG 0.499493 1_4:-72182449 None:intergenic
GAGATACGGTCGGACCGGAC+GGG 0.499884 1_4:-72181698 None:intergenic
GAGGCATTGAACTATTAGCC+TGG 0.508666 1_4:-72182397 None:intergenic
CATTTGCATGATCATGTCCA+AGG 0.516855 1_4:+72184058 Msa0183310:three_prime_UTR
CTAATAGTTCAATGCCTCAA+TGG 0.518261 1_4:+72182402 Msa0183310:CDS
TGTAAAACGTGTTCAGTCCC+AGG 0.519566 1_4:+72182379 Msa0183310:CDS
TAGATATTGTCCCATTTCTA+GGG 0.520925 1_4:+72183911 Msa0183310:CDS
CTCAGCACCGTTCGAGATGT+CGG 0.522136 1_4:+72181865 Msa0183310:CDS
TCTTGGTTTCGCTATACCTA+AGG 0.523449 1_4:+72183983 Msa0183310:CDS
TGGTCTTGGGAAAGATGAAC+CGG 0.528342 1_4:-72181723 None:intergenic
ACTGAAGCTGTTAGGTGTAT+CGG 0.529175 1_4:+72181898 Msa0183310:CDS
TCGCTATACCTAAGGTAGAC+AGG 0.529570 1_4:+72183991 Msa0183310:exon
CGGTCCGACCGTATCTCTGC+CGG 0.529633 1_4:+72181704 Msa0183310:CDS
TCAGCCCCAGCATAACCTGC+AGG 0.529775 1_4:-72182551 None:intergenic
GCTGTTGTTATAACAATAGG+AGG 0.530149 1_4:+72183838 Msa0183310:CDS
GACCGGACGGGGATAGTAGC+TGG 0.530833 1_4:-72181686 None:intergenic
AACTGGTGCTTTCTTCATGG+TGG 0.533216 1_4:-72182432 None:intergenic
ACGAGACTGCGAACCGGTGG+TGG 0.533492 1_4:-72181743 None:intergenic
ACAATAGGAGGGCTCGTAGC+CGG 0.533690 1_4:+72183850 Msa0183310:CDS
CAGCCCCAGCATAACCTGCA+GGG 0.534202 1_4:-72182550 None:intergenic
AGTGATCTTGGTCTACAAGC+TGG 0.534395 1_4:+72182476 Msa0183310:CDS
CACTCGTCAACGAGGAGCGT+GGG 0.536752 1_4:+72181812 Msa0183310:CDS
CGGCAGAGATACGGTCGGAC+CGG 0.541076 1_4:-72181703 None:intergenic
TAGCCTTCACTGTCAACCCT+TGG 0.542711 1_4:-72184075 None:intergenic
GGCGCGAAGTATATCATCAA+AGG 0.548559 1_4:-72181930 None:intergenic
AGAGATACGGTCGGACCGGA+CGG 0.551833 1_4:-72181699 None:intergenic
TGGAGTATATGGTGCACTGA+TGG 0.556326 1_4:+72182496 Msa0183310:CDS
AAGATGATTATTAGCATCAA+CGG 0.557664 1_4:+72181542 None:intergenic
AGGCATTGAACTATTAGCCT+GGG 0.559812 1_4:-72182396 None:intergenic
GGCCACGGTTCGGTGAGGAT+CGG 0.561057 1_4:-72181770 None:intergenic
CACCTTCTACGTAGCGGCCA+CGG 0.561943 1_4:-72181785 None:intergenic
GGGAGCGTATCCCTAGAAAT+GGG 0.562434 1_4:-72183921 None:intergenic
CACCAGCTACTATCCCCGTC+CGG 0.566811 1_4:+72181684 Msa0183310:CDS
AGCTTGTAGACCAAGATCAC+TGG 0.567895 1_4:-72182474 None:intergenic
AGATACGGTCGGACCGGACG+GGG 0.570930 1_4:-72181697 None:intergenic
CTACCAGCCAAGATAAGTCC+CGG 0.574753 1_4:-72182578 None:intergenic
CTACAGCTGATGCGGCCACA+GGG 0.576147 1_4:-72184119 None:intergenic
AACTGACCCTACAACAGCAC+CGG 0.576918 1_4:-72183869 None:intergenic
ATTTGCATGATCATGTCCAA+GGG 0.578012 1_4:+72184059 Msa0183310:three_prime_UTR
AGCCCCAGCATAACCTGCAG+GGG 0.587242 1_4:-72182549 None:intergenic
GGAGTATATGGTGCACTGAT+GGG 0.588659 1_4:+72182497 Msa0183310:CDS
GACGGGGATAGTAGCTGGTG+TGG 0.596353 1_4:-72181681 None:intergenic
GGTTTAACGAGACTGCGAAC+CGG 0.597083 1_4:-72181749 None:intergenic
TGTCCAAGGGTTGACAGTGA+AGG 0.597959 1_4:+72184072 Msa0183310:three_prime_UTR
TTCGCTAACAACAGCAGCAG+GGG 0.605157 1_4:-72183941 None:intergenic
ATCTTTGCAAGAAGCAACGA+TGG 0.607582 1_4:-72181960 None:intergenic
AGTGAAGGCTACTGTTATAG+GGG 0.611438 1_4:+72184087 Msa0183310:three_prime_UTR
GCACTCGTCAACGAGGAGCG+TGG 0.612531 1_4:+72181811 Msa0183310:CDS
GCCCCAGCATAACCTGCAGG+GGG 0.620500 1_4:-72182548 None:intergenic
ATGACATGTTGCTTATGCAG+AGG 0.621680 1_4:+72182303 Msa0183310:CDS
CGTGGCCGCTACGTAGAAGG+TGG 0.636433 1_4:+72181786 Msa0183310:CDS
CTTCGCTAACAACAGCAGCA+GGG 0.636870 1_4:-72183942 None:intergenic
CCAGTTCTCTACAGCTGATG+CGG 0.638669 1_4:-72184127 None:intergenic
ATGGTGGATTGCATCCATTG+AGG 0.641012 1_4:-72182416 None:intergenic
TTGTAGACCAAGATCACTGG+TGG 0.661997 1_4:-72182471 None:intergenic
AGACCAAGATCACTGGTGGA+AGG 0.664781 1_4:-72182467 None:intergenic
AACCGATCCTCACCGAACCG+TGG 0.674182 1_4:+72181768 Msa0183310:CDS
CTGTTGTTATAACAATAGGA+GGG 0.684835 1_4:+72183839 Msa0183310:CDS
AAGCTGTTAGGTGTATCGGA+AGG 0.687616 1_4:+72181902 Msa0183310:CDS
TTGTGTGTTGAAGAAATGTG+AGG 0.689449 1_4:-72181651 None:intergenic
TTAACGAGACTGCGAACCGG+TGG 0.689656 1_4:-72181746 None:intergenic
GTAGCGGCCACGGTTCGGTG+AGG 0.697717 1_4:-72181775 None:intergenic
TTATGCAGAGGTTAACTCAG+CGG 0.705557 1_4:+72182315 Msa0183310:CDS
TGCTTCCACCTTCTACGTAG+CGG 0.712698 1_4:-72181791 None:intergenic
TAGGGGTATAGCTGGCCCTG+TGG 0.725216 1_4:+72184104 Msa0183310:three_prime_UTR
GGTGGAAGCACTCGTCAACG+AGG 0.726269 1_4:+72181804 Msa0183310:CDS
TGAACCGGCAGAGATACGGT+CGG 0.737243 1_4:-72181708 None:intergenic
TTTCACTAACAAGATCAACA+GGG 0.765605 1_4:-72184187 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTGATATTAAAAGTTT+TGG + chr1_4:72183245-72183264 Msa0183310:intron 15.0%
!! AATAAAAGTAAGCATTTAGA+TGG + chr1_4:72182737-72182756 Msa0183310:intron 20.0%
!! ATTATGAATGTCTACAAAAT+TGG - chr1_4:72183105-72183124 None:intergenic 20.0%
!!! TTTTGTAGACATTCATAATA+AGG + chr1_4:72183106-72183125 Msa0183310:intron 20.0%
!!! ACTTTTAATATCAAAAGTCT+GGG - chr1_4:72183243-72183262 None:intergenic 20.0%
!!! AACTTTTAATATCAAAAGTC+TGG - chr1_4:72183244-72183263 None:intergenic 20.0%
!! AAGTTGTTTATCTTAACAAA+TGG + chr1_4:72183378-72183397 Msa0183310:intron 20.0%
!!! TTTAACTTGAAGATAGAATT+TGG + chr1_4:72183588-72183607 Msa0183310:intron 20.0%
!!! TTAACTTGAAGATAGAATTT+GGG + chr1_4:72183589-72183608 Msa0183310:intron 20.0%
!! AAGCTAAAAATCAATTCTAA+AGG - chr1_4:72183622-72183641 None:intergenic 20.0%
!! CTATTTCGATCTTTTCTTTT+TGG + chr1_4:72181581-72181600 Msa0183310:CDS 25.0%
! GCTTATATTATAGCTTATAC+AGG - chr1_4:72182094-72182113 None:intergenic 25.0%
! TAATTCTATACACCTATTGA+TGG + chr1_4:72182248-72182267 Msa0183310:intron 25.0%
! ACCAAAAAGAATGTTAAGTT+AGG + chr1_4:72182626-72182645 Msa0183310:CDS 25.0%
!! ACCTAACTTAACATTCTTTT+TGG - chr1_4:72182630-72182649 None:intergenic 25.0%
! AAAGAATGTTAAGTTAGGTA+AGG + chr1_4:72182631-72182650 Msa0183310:intron 25.0%
! ACATTGATATTGTAATGCAA+TGG + chr1_4:72182667-72182686 Msa0183310:intron 25.0%
!! TAGAACTTTTCTTTCAACAA+AGG - chr1_4:72182828-72182847 None:intergenic 25.0%
! AATGTACAGTTTCAATAAGA+GGG - chr1_4:72182978-72182997 None:intergenic 25.0%
! AAATGTACAGTTTCAATAAG+AGG - chr1_4:72182979-72182998 None:intergenic 25.0%
! AGAAATGAAGTCTATTCAAT+AGG - chr1_4:72183212-72183231 None:intergenic 25.0%
!!! AGGGTTTTATTTACCTAATA+TGG + chr1_4:72183319-72183338 Msa0183310:intron 25.0%
!!! GAGATTGTTTCTGTATAAAA+TGG + chr1_4:72183341-72183360 Msa0183310:intron 25.0%
! TAGTTTAAGAAAGAGGTAAA+CGG - chr1_4:72183450-72183469 None:intergenic 25.0%
! CAAAATCAATTATACACCTT+TGG - chr1_4:72183519-72183538 None:intergenic 25.0%
!!! CAAAGGTGTATAATTGATTT+TGG + chr1_4:72183517-72183536 Msa0183310:intron 25.0%
!!! ATAATTGATTTTGGCATGTT+TGG + chr1_4:72183526-72183545 Msa0183310:intron 25.0%
!! CTTCAAGTTAAAATAAATCC+TGG - chr1_4:72183580-72183599 None:intergenic 25.0%
! TAACTTGAAGATAGAATTTG+GGG + chr1_4:72183590-72183609 Msa0183310:intron 25.0%
! GTTAGTGAAATCATAATTCT+TGG + chr1_4:72184200-72184219 Msa0183310:three_prime_UTR 25.0%
! ATGAAATGTAGTTGTTTATC+TGG + chr1_4:72184365-72184384 Msa0183310:three_prime_UTR 25.0%
ACATTTCTTCAACACACAAA+TGG + chr1_4:72181655-72181674 Msa0183310:CDS 30.0%
TAACCTGAGAAATAGTTTCT+TGG - chr1_4:72181988-72182007 None:intergenic 30.0%
CAAATCAACAACAAGTAAAG+TGG - chr1_4:72182013-72182032 None:intergenic 30.0%
TACATGAATTTCAAGACCAT+GGG - chr1_4:72182158-72182177 None:intergenic 30.0%
! TGGAATTTCTGTGCATTTTT+AGG + chr1_4:72182268-72182287 Msa0183310:intron 30.0%
!! TGGAATTTTTGTTTCATGAG+TGG + chr1_4:72182687-72182706 Msa0183310:intron 30.0%
!! ATTCGTATTGACTTGTATCA+TGG + chr1_4:72182714-72182733 Msa0183310:intron 30.0%
TCAGTTTCACTAAAGTTATG+TGG + chr1_4:72182882-72182901 Msa0183310:intron 30.0%
! TCTAATGGATCTAATTCATG+TGG - chr1_4:72182911-72182930 None:intergenic 30.0%
! CCTATTGGTTAAAGTTCTAA+TGG - chr1_4:72182926-72182945 None:intergenic 30.0%
CCATTAGAACTTTAACCAAT+AGG + chr1_4:72182923-72182942 Msa0183310:intron 30.0%
ATGTACAGTTTCAATAAGAG+GGG - chr1_4:72182977-72182996 None:intergenic 30.0%
CTTATTGTTTCGACAAAGAA+TGG - chr1_4:72183184-72183203 None:intergenic 30.0%
CATTCTTTGTCGAAACAATA+AGG + chr1_4:72183182-72183201 Msa0183310:intron 30.0%
ATGAAGTCTATTCAATAGGT+TGG - chr1_4:72183208-72183227 None:intergenic 30.0%
ACAGAAACAATCTCCATATT+AGG - chr1_4:72183335-72183354 None:intergenic 30.0%
CTGAGAATAGTTTAAGAAAG+AGG - chr1_4:72183457-72183476 None:intergenic 30.0%
CAAGTTAAAATAAATCCTGG+AGG - chr1_4:72183577-72183596 None:intergenic 30.0%
AAAGCTATTCAGATGAAAGT+AGG - chr1_4:72183661-72183680 None:intergenic 30.0%
CCAAAAGGATTAAGTGTATT+TGG - chr1_4:72183745-72183764 None:intergenic 30.0%
! CCAAATACACTTAATCCTTT+TGG + chr1_4:72183742-72183761 Msa0183310:intron 30.0%
AAATGCTATGCTAATCCAAA+AGG - chr1_4:72183760-72183779 None:intergenic 30.0%
! ATAGAAAAGGGAAGTGTAAA+AGG - chr1_4:72183805-72183824 None:intergenic 30.0%
AAGGCTGTTGTTATAACAAT+AGG + chr1_4:72183835-72183854 Msa0183310:CDS 30.0%
CTGTTGTTATAACAATAGGA+GGG + chr1_4:72183839-72183858 Msa0183310:CDS 30.0%
TAGATATTGTCCCATTTCTA+GGG + chr1_4:72183911-72183930 Msa0183310:CDS 30.0%
! TGTAGAAATTGTCCCATTTT+TGG + chr1_4:72184154-72184173 Msa0183310:three_prime_UTR 30.0%
!! GTAGAAATTGTCCCATTTTT+GGG + chr1_4:72184155-72184174 Msa0183310:three_prime_UTR 30.0%
TTTCACTAACAAGATCAACA+GGG - chr1_4:72184190-72184209 None:intergenic 30.0%
ATTTCACTAACAAGATCAAC+AGG - chr1_4:72184191-72184210 None:intergenic 30.0%
! ATCATACCTCAAGCATTTTT+AGG + chr1_4:72184308-72184327 Msa0183310:three_prime_UTR 30.0%
TTACATCCTAAAAATGCTTG+AGG - chr1_4:72184317-72184336 None:intergenic 30.0%
! AAGATGCAGATTTTATGTTC+AGG + chr1_4:72184421-72184440 Msa0183310:three_prime_UTR 30.0%
! AGATGCAGATTTTATGTTCA+GGG + chr1_4:72184422-72184441 Msa0183310:three_prime_UTR 30.0%
AGAAATGTGAGGCTTGAAAT+TGG - chr1_4:72181643-72181662 None:intergenic 35.0%
TTGTGTGTTGAAGAAATGTG+AGG - chr1_4:72181654-72181673 None:intergenic 35.0%
! TGACCAAGAAACTATTTCTC+AGG + chr1_4:72181982-72182001 Msa0183310:CDS 35.0%
GTACATGAATTTCAAGACCA+TGG - chr1_4:72182159-72182178 None:intergenic 35.0%
! ACTGAAATTGTGAGGTATTC+AGG - chr1_4:72182196-72182215 None:intergenic 35.0%
AACTAGAGACTGAAATTGTG+AGG - chr1_4:72182204-72182223 None:intergenic 35.0%
TGCACAGAAATTCCATCAAT+AGG - chr1_4:72182263-72182282 None:intergenic 35.0%
CTAATAGTTCAATGCCTCAA+TGG + chr1_4:72182402-72182421 Msa0183310:CDS 35.0%
!! ATGGGTTTCACCTATTTTAG+TGG + chr1_4:72182515-72182534 Msa0183310:CDS 35.0%
!! CTTTTTGGTCATGAAGTACA+AGG - chr1_4:72182615-72182634 None:intergenic 35.0%
AAGCATTTAGATGGCCATAA+TGG + chr1_4:72182746-72182765 Msa0183310:intron 35.0%
AGCATTTAGATGGCCATAAT+GGG + chr1_4:72182747-72182766 Msa0183310:intron 35.0%
TTCAACAAAGGCAAACATGA+AGG - chr1_4:72182816-72182835 None:intergenic 35.0%
CTTTAACCAATAGGAGATAG+TGG + chr1_4:72182932-72182951 Msa0183310:intron 35.0%
TTCTAACCACTATCTCCTAT+TGG - chr1_4:72182941-72182960 None:intergenic 35.0%
TTCTTATACTGCTAATCTGC+TGG + chr1_4:72183270-72183289 Msa0183310:intron 35.0%
! ACAAATGGTACTTCTAGTTG+TGG + chr1_4:72183393-72183412 Msa0183310:intron 35.0%
! CAAATGGTACTTCTAGTTGT+GGG + chr1_4:72183394-72183413 Msa0183310:intron 35.0%
!!! TACACCTTTGGAGTCAATTT+TGG - chr1_4:72183507-72183526 None:intergenic 35.0%
! TTGGCATGTTTGGATGTTTT+CGG + chr1_4:72183536-72183555 Msa0183310:intron 35.0%
!! ATAGAATTGATTTTGCCTCC+AGG + chr1_4:72183559-72183578 Msa0183310:intron 35.0%
!! ATTAAGTGTATTTGGCTCTG+CGG - chr1_4:72183737-72183756 None:intergenic 35.0%
!!! TTCCCTTTTCTATTTCTGCA+GGG + chr1_4:72183812-72183831 Msa0183310:intron 35.0%
TTCCCTGCAGAAATAGAAAA+GGG - chr1_4:72183817-72183836 None:intergenic 35.0%
GCTGTTGTTATAACAATAGG+AGG + chr1_4:72183838-72183857 Msa0183310:CDS 35.0%
GTAGATATTGTCCCATTTCT+AGG + chr1_4:72183910-72183929 Msa0183310:CDS 35.0%
CATAATCATCTCTCAGTTCT+TGG + chr1_4:72183966-72183985 Msa0183310:CDS 35.0%
ATTTGCATGATCATGTCCAA+GGG + chr1_4:72184059-72184078 Msa0183310:three_prime_UTR 35.0%
!! CCATGTTTGCTTTTGATACA+AGG - chr1_4:72184236-72184255 None:intergenic 35.0%
CCTTGTATCAAAAGCAAACA+TGG + chr1_4:72184233-72184252 Msa0183310:three_prime_UTR 35.0%
! TTTTCAACCGACATCTCGAA+CGG - chr1_4:72181875-72181894 None:intergenic 40.0%
ACTGAAGCTGTTAGGTGTAT+CGG + chr1_4:72181898-72181917 Msa0183310:CDS 40.0%
! AGAAGCAACGATGGAGTTTT+TGG - chr1_4:72181954-72181973 None:intergenic 40.0%
ATCTTTGCAAGAAGCAACGA+TGG - chr1_4:72181963-72181982 None:intergenic 40.0%
!!! ATGCTTGAGTTTTTTGCCCA+TGG + chr1_4:72182139-72182158 Msa0183310:intron 40.0%
! TGAGGTATTCAGGACATCAA+GGG - chr1_4:72182186-72182205 None:intergenic 40.0%
!!! TTCTGTGCATTTTTAGGTCG+AGG + chr1_4:72182274-72182293 Msa0183310:intron 40.0%
! ATGACATGTTGCTTATGCAG+AGG + chr1_4:72182303-72182322 Msa0183310:CDS 40.0%
TTATGCAGAGGTTAACTCAG+CGG + chr1_4:72182315-72182334 Msa0183310:CDS 40.0%
!! AGGCATTGAACTATTAGCCT+GGG - chr1_4:72182399-72182418 None:intergenic 40.0%
TGAAACTGGTGCTTTCTTCA+TGG - chr1_4:72182438-72182457 None:intergenic 40.0%
GAAGGTGACTCAATTGAAAC+TGG - chr1_4:72182452-72182471 None:intergenic 40.0%
CGAAGAAGAGCCACTAAAAT+AGG - chr1_4:72182528-72182547 None:intergenic 40.0%
! ATTTAGATGGCCATAATGGG+TGG + chr1_4:72182750-72182769 Msa0183310:intron 40.0%
!! TTTAGATGGCCATAATGGGT+GGG + chr1_4:72182751-72182770 Msa0183310:intron 40.0%
TGAAGACACAAAGCAATGAG+TGG + chr1_4:72183014-72183033 Msa0183310:intron 40.0%
ATGAGTGGTATGAGTATGCA+AGG + chr1_4:72183029-72183048 Msa0183310:intron 40.0%
AATCTGCTGGATATTACTGC+TGG + chr1_4:72183283-72183302 Msa0183310:intron 40.0%
! AGAGCCAAAATTGACTCCAA+AGG + chr1_4:72183500-72183519 Msa0183310:intron 40.0%
! GAAAAGGGAAGTGTAAAAGG+AGG - chr1_4:72183802-72183821 None:intergenic 40.0%
!!! CTTCCCTTTTCTATTTCTGC+AGG + chr1_4:72183811-72183830 Msa0183310:intron 40.0%
CTTCCCTGCAGAAATAGAAA+AGG - chr1_4:72183818-72183837 None:intergenic 40.0%
!!! CTTTTCTATTTCTGCAGGGA+AGG + chr1_4:72183816-72183835 Msa0183310:intron 40.0%
TCTTGGTTTCGCTATACCTA+AGG + chr1_4:72183983-72184002 Msa0183310:CDS 40.0%
! CAAGTTTTCCTGTCTACCTT+AGG - chr1_4:72184002-72184021 None:intergenic 40.0%
CTAAGGTAGACAGGAAAACT+TGG + chr1_4:72184000-72184019 Msa0183310:exon 40.0%
CATTTGCATGATCATGTCCA+AGG + chr1_4:72184058-72184077 Msa0183310:three_prime_UTR 40.0%
ACAGTGAAGGCTACTGTTAT+AGG + chr1_4:72184085-72184104 Msa0183310:three_prime_UTR 40.0%
CAGTGAAGGCTACTGTTATA+GGG + chr1_4:72184086-72184105 Msa0183310:three_prime_UTR 40.0%
AGTGAAGGCTACTGTTATAG+GGG + chr1_4:72184087-72184106 Msa0183310:three_prime_UTR 40.0%
! TACTGTTATAGGGGTATAGC+TGG + chr1_4:72184096-72184115 Msa0183310:three_prime_UTR 40.0%
!! ATTGTCCCATTTTTGGGCAT+AGG + chr1_4:72184161-72184180 Msa0183310:three_prime_UTR 40.0%
GGAATCCTATGCCCAAAAAT+GGG - chr1_4:72184169-72184188 None:intergenic 40.0%
AAGATGAACCGGCAGAGATA+CGG - chr1_4:72181715-72181734 None:intergenic 45.0%
! TGGTCTTGGGAAAGATGAAC+CGG - chr1_4:72181726-72181745 None:intergenic 45.0%
GAAAACGCACTGAAGCTGTT+AGG + chr1_4:72181890-72181909 Msa0183310:CDS 45.0%
AAGCTGTTAGGTGTATCGGA+AGG + chr1_4:72181902-72181921 Msa0183310:CDS 45.0%
GGCGCGAAGTATATCATCAA+AGG - chr1_4:72181933-72181952 None:intergenic 45.0%
! GAGGTATTCAGGACATCAAG+GGG - chr1_4:72182185-72182204 None:intergenic 45.0%
! GTGAGGTATTCAGGACATCA+AGG - chr1_4:72182187-72182206 None:intergenic 45.0%
TGTAAAACGTGTTCAGTCCC+AGG + chr1_4:72182379-72182398 Msa0183310:CDS 45.0%
!! GAGGCATTGAACTATTAGCC+TGG - chr1_4:72182400-72182419 None:intergenic 45.0%
!! ATGGTGGATTGCATCCATTG+AGG - chr1_4:72182419-72182438 None:intergenic 45.0%
AACTGGTGCTTTCTTCATGG+TGG - chr1_4:72182435-72182454 None:intergenic 45.0%
TTGTAGACCAAGATCACTGG+TGG - chr1_4:72182474-72182493 None:intergenic 45.0%
AGCTTGTAGACCAAGATCAC+TGG - chr1_4:72182477-72182496 None:intergenic 45.0%
AGTGATCTTGGTCTACAAGC+TGG + chr1_4:72182476-72182495 Msa0183310:CDS 45.0%
GGTCTACAAGCTGGAGTATA+TGG + chr1_4:72182485-72182504 Msa0183310:CDS 45.0%
TGGAGTATATGGTGCACTGA+TGG + chr1_4:72182496-72182515 Msa0183310:CDS 45.0%
! GGAGTATATGGTGCACTGAT+GGG + chr1_4:72182497-72182516 Msa0183310:CDS 45.0%
TGATGTTCCGGGACTTATCT+TGG + chr1_4:72182571-72182590 Msa0183310:CDS 45.0%
CTTATCTTGGCTGGTAGCTT+TGG + chr1_4:72182584-72182603 Msa0183310:CDS 45.0%
TTGGTGCACTGTATGATGCA+AGG - chr1_4:72183086-72183105 None:intergenic 45.0%
!! TGCTGGTGTCTTTGAAGTGA+GGG + chr1_4:72183300-72183319 Msa0183310:intron 45.0%
! ATGGTACTTCTAGTTGTGGG+TGG + chr1_4:72183397-72183416 Msa0183310:intron 45.0%
TAGGGTCAGTTGTAGAGAAC+TGG + chr1_4:72183881-72183900 Msa0183310:CDS 45.0%
AGTTGTAGAGAACTGGTTGC+AGG + chr1_4:72183888-72183907 Msa0183310:CDS 45.0%
TCGCTATACCTAAGGTAGAC+AGG + chr1_4:72183991-72184010 Msa0183310:exon 45.0%
GGGAATCCTATGCCCAAAAA+TGG - chr1_4:72184170-72184189 None:intergenic 45.0%
! GCAGATTTTATGTTCAGGGC+TGG + chr1_4:72184426-72184445 Msa0183310:three_prime_UTR 45.0%
ATCTTTCCCAAGACCACCAC+CGG + chr1_4:72181730-72181749 Msa0183310:CDS 50.0%
GGTTTAACGAGACTGCGAAC+CGG - chr1_4:72181752-72181771 None:intergenic 50.0%
TGCTTCCACCTTCTACGTAG+CGG - chr1_4:72181794-72181813 None:intergenic 50.0%
TCACCTTCCACCAGTGATCT+TGG + chr1_4:72182464-72182483 Msa0183310:CDS 50.0%
AGACCAAGATCACTGGTGGA+AGG - chr1_4:72182470-72182489 None:intergenic 50.0%
TTATGCTGGGGCTGATGTTC+CGG + chr1_4:72182559-72182578 Msa0183310:CDS 50.0%
CTACCAGCCAAGATAAGTCC+CGG - chr1_4:72182581-72182600 None:intergenic 50.0%
TCCTACTCTCCCACCCATTA+TGG - chr1_4:72182763-72182782 None:intergenic 50.0%
!! CTGCTGGTGTCTTTGAAGTG+AGG + chr1_4:72183299-72183318 Msa0183310:intron 50.0%
AACTGACCCTACAACAGCAC+CGG - chr1_4:72183872-72183891 None:intergenic 50.0%
! GGGAGCGTATCCCTAGAAAT+GGG - chr1_4:72183924-72183943 None:intergenic 50.0%
TTCGCTAACAACAGCAGCAG+GGG - chr1_4:72183944-72183963 None:intergenic 50.0%
CTTCGCTAACAACAGCAGCA+GGG - chr1_4:72183945-72183964 None:intergenic 50.0%
ACTTCGCTAACAACAGCAGC+AGG - chr1_4:72183946-72183965 None:intergenic 50.0%
TGTCCAAGGGTTGACAGTGA+AGG + chr1_4:72184072-72184091 Msa0183310:three_prime_UTR 50.0%
TAGCCTTCACTGTCAACCCT+TGG - chr1_4:72184078-72184097 None:intergenic 50.0%
CCAGTTCTCTACAGCTGATG+CGG - chr1_4:72184130-72184149 None:intergenic 50.0%
TGAACCGGCAGAGATACGGT+CGG - chr1_4:72181711-72181730 None:intergenic 55.0%
TTAACGAGACTGCGAACCGG+TGG - chr1_4:72181749-72181768 None:intergenic 55.0%
CTCAGCACCGTTCGAGATGT+CGG + chr1_4:72181865-72181884 Msa0183310:CDS 55.0%
TATGCTGGGGCTGATGTTCC+GGG + chr1_4:72182560-72182579 Msa0183310:CDS 55.0%
GTTCCGGGACTTATCTTGGC+TGG + chr1_4:72182575-72182594 Msa0183310:CDS 55.0%
!! GCCATAATGGGTGGGAGAGT+AGG + chr1_4:72182759-72182778 Msa0183310:intron 55.0%
ACAATAGGAGGGCTCGTAGC+CGG + chr1_4:72183850-72183869 Msa0183310:CDS 55.0%
!! TCGTAGCCGGTGCTGTTGTA+GGG + chr1_4:72183863-72183882 Msa0183310:CDS 55.0%
! GGGGAGCGTATCCCTAGAAA+TGG - chr1_4:72183925-72183944 None:intergenic 55.0%
CCGCATCAGCTGTAGAGAAC+TGG + chr1_4:72184127-72184146 Msa0183310:three_prime_UTR 55.0%
GACGGGGATAGTAGCTGGTG+TGG - chr1_4:72181684-72181703 None:intergenic 60.0%
CACCAGCTACTATCCCCGTC+CGG + chr1_4:72181684-72181703 Msa0183310:CDS 60.0%
AGAGATACGGTCGGACCGGA+CGG - chr1_4:72181702-72181721 None:intergenic 60.0%
! TGCGAACCGGTGGTGGTCTT+GGG - chr1_4:72181739-72181758 None:intergenic 60.0%
AACCGATCCTCACCGAACCG+TGG + chr1_4:72181768-72181787 Msa0183310:CDS 60.0%
TCTACGTAGCGGCCACGGTT+CGG - chr1_4:72181783-72181802 None:intergenic 60.0%
AACCGTGGCCGCTACGTAGA+AGG + chr1_4:72181783-72181802 Msa0183310:CDS 60.0%
CACCTTCTACGTAGCGGCCA+CGG - chr1_4:72181788-72181807 None:intergenic 60.0%
!! GGTGGAAGCACTCGTCAACG+AGG + chr1_4:72181804-72181823 Msa0183310:CDS 60.0%
! CACTCGTCAACGAGGAGCGT+GGG + chr1_4:72181812-72181831 Msa0183310:CDS 60.0%
AGGTTAACTCAGCGGCGAGC+AGG + chr1_4:72182323-72182342 Msa0183310:CDS 60.0%
AGCCCCAGCATAACCTGCAG+GGG - chr1_4:72182552-72182571 None:intergenic 60.0%
CAGCCCCAGCATAACCTGCA+GGG - chr1_4:72182553-72182572 None:intergenic 60.0%
TCAGCCCCAGCATAACCTGC+AGG - chr1_4:72182554-72182573 None:intergenic 60.0%
!! CTCGTAGCCGGTGCTGTTGT+AGG + chr1_4:72183862-72183881 Msa0183310:CDS 60.0%
! TAGGGGTATAGCTGGCCCTG+TGG + chr1_4:72184104-72184123 Msa0183310:three_prime_UTR 60.0%
CTACAGCTGATGCGGCCACA+GGG - chr1_4:72184122-72184141 None:intergenic 60.0%
TCTACAGCTGATGCGGCCAC+AGG - chr1_4:72184123-72184142 None:intergenic 60.0%
GACCGGACGGGGATAGTAGC+TGG - chr1_4:72181689-72181708 None:intergenic 65.0%
AGATACGGTCGGACCGGACG+GGG - chr1_4:72181700-72181719 None:intergenic 65.0%
GAGATACGGTCGGACCGGAC+GGG - chr1_4:72181701-72181720 None:intergenic 65.0%
CGGCAGAGATACGGTCGGAC+CGG - chr1_4:72181706-72181725 None:intergenic 65.0%
CGGTCCGACCGTATCTCTGC+CGG + chr1_4:72181704-72181723 Msa0183310:CDS 65.0%
! CTGCGAACCGGTGGTGGTCT+TGG - chr1_4:72181740-72181759 None:intergenic 65.0%
ACGAGACTGCGAACCGGTGG+TGG - chr1_4:72181746-72181765 None:intergenic 65.0%
!! GGCCACGGTTCGGTGAGGAT+CGG - chr1_4:72181773-72181792 None:intergenic 65.0%
CGTGGCCGCTACGTAGAAGG+TGG + chr1_4:72181786-72181805 Msa0183310:CDS 65.0%
GCACTCGTCAACGAGGAGCG+TGG + chr1_4:72181811-72181830 Msa0183310:CDS 65.0%
! GTCAACGAGGAGCGTGGGAC+CGG + chr1_4:72181817-72181836 Msa0183310:CDS 65.0%
TCGCCCCCTGCAGGTTATGC+TGG + chr1_4:72182545-72182564 Msa0183310:CDS 65.0%
CGCCCCCTGCAGGTTATGCT+GGG + chr1_4:72182546-72182565 Msa0183310:CDS 65.0%
GCCCCCTGCAGGTTATGCTG+GGG + chr1_4:72182547-72182566 Msa0183310:CDS 65.0%
GCCCCAGCATAACCTGCAGG+GGG - chr1_4:72182551-72182570 None:intergenic 65.0%
!! GTAGCGGCCACGGTTCGGTG+AGG - chr1_4:72181778-72181797 None:intergenic 70.0%
! GAGGAGCGTGGGACCGGTTC+AGG + chr1_4:72181823-72181842 Msa0183310:CDS 70.0%
GCGCGCGAACTCGCCTGAAC+CGG - chr1_4:72181839-72181858 None:intergenic 70.0%
GGCTCTTCTTCGCCCCCTGC+AGG + chr1_4:72182536-72182555 Msa0183310:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 72181546 72184456 72181546 ID=Msa0183310;Name=Msa0183310
chr1_4 mRNA 72181546 72184456 72181546 ID=Msa0183310-mRNA-1;Parent=Msa0183310;Name=Msa0183310-mRNA-1;_AED=0.01;_eAED=0.01;_QI=29|1|1|1|1|1|3|448|320
chr1_4 exon 72181546 72182003 72181546 ID=Msa0183310-mRNA-1:exon:24278;Parent=Msa0183310-mRNA-1
chr1_4 exon 72182290 72182647 72182290 ID=Msa0183310-mRNA-1:exon:24279;Parent=Msa0183310-mRNA-1
chr1_4 exon 72183833 72184456 72183833 ID=Msa0183310-mRNA-1:exon:24280;Parent=Msa0183310-mRNA-1
chr1_4 five_prime_UTR 72181546 72181574 72181546 ID=Msa0183310-mRNA-1:five_prime_utr;Parent=Msa0183310-mRNA-1
chr1_4 CDS 72181575 72182003 72181575 ID=Msa0183310-mRNA-1:cds;Parent=Msa0183310-mRNA-1
chr1_4 CDS 72182290 72182647 72182290 ID=Msa0183310-mRNA-1:cds;Parent=Msa0183310-mRNA-1
chr1_4 CDS 72183833 72184008 72183833 ID=Msa0183310-mRNA-1:cds;Parent=Msa0183310-mRNA-1
chr1_4 three_prime_UTR 72184009 72184456 72184009 ID=Msa0183310-mRNA-1:three_prime_utr;Parent=Msa0183310-mRNA-1
Gene Sequence

>Msa0183310

ATGAAACTATTTCGATCTTTTCTTTTTGGCTTTATTTTATTTTCTTTTCATTTTTATTCGTCACTCCAATTTCAAGCCTCACATTTCTTCAACACACAAATGGCTGCCACACCAGCTACTATCCCCGTCCGGTCCGACCGTATCTCTGCCGGTTCATCTTTCCCAAGACCACCACCGGTTCGCAGTCTCGTTAAACCGATCCTCACCGAACCGTGGCCGCTACGTAGAAGGTGGAAGCACTCGTCAACGAGGAGCGTGGGACCGGTTCAGGCGAGTTCGCGCGCAGATGACTCAGCACCGTTCGAGATGTCGGTTGAAAACGCACTGAAGCTGTTAGGTGTATCGGAAGGTGCTTCCTTTGATGATATACTTCGCGCCAAAAACTCCATCGTTGCTTCTTGCAAAGATGACCAAGAAACTATTTCTCAGGTCGAGGCTGCATATGACATGTTGCTTATGCAGAGGTTAACTCAGCGGCGAGCAGGAAAAGTAGTGAGCAGCAGTGTTCGTTATGCTGATGTAAAACGTGTTCAGTCCCAGGCTAATAGTTCAATGCCTCAATGGATGCAATCCACCATGAAGAAAGCACCAGTTTCAATTGAGTCACCTTCCACCAGTGATCTTGGTCTACAAGCTGGAGTATATGGTGCACTGATGGGTTTCACCTATTTTAGTGGCTCTTCTTCGCCCCCTGCAGGTTATGCTGGGGCTGATGTTCCGGGACTTATCTTGGCTGGTAGCTTTGGAGCTTCCTTGTACTTCATGACCAAAAAGAATGTTAAGTTAGGGAAGGCTGTTGTTATAACAATAGGAGGGCTCGTAGCCGGTGCTGTTGTAGGGTCAGTTGTAGAGAACTGGTTGCAGGTAGATATTGTCCCATTTCTAGGGATACGCTCCCCTGCTGCTGTTGTTAGCGAAGTCATAATCATCTCTCAGTTCTTGGTTTCGCTATACCTAAGGTAG

Protein sequence

>Msa0183310

MKLFRSFLFGFILFSFHFYSSLQFQASHFFNTQMAATPATIPVRSDRISAGSSFPRPPPVRSLVKPILTEPWPLRRRWKHSSTRSVGPVQASSRADDSAPFEMSVENALKLLGVSEGASFDDILRAKNSIVASCKDDQETISQVEAAYDMLLMQRLTQRRAGKVVSSSVRYADVKRVQSQANSSMPQWMQSTMKKAPVSIESPSTSDLGLQAGVYGALMGFTYFSGSSSPPAGYAGADVPGLILAGSFGASLYFMTKKNVKLGKAVVITIGGLVAGAVVGSVVENWLQVDIVPFLGIRSPAAVVSEVIIISQFLVSLYLR*