Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748180 | sp|Q8VYE2|TIM50_ARATH | 60.289 | 277 | 106 | 2 | 116 | 389 | 81 | 356 | 1.81e-119 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748180 | G7K4N6 | 90.164 | 366 | 34 | 1 | 30 | 395 | 1 | 364 | 0.0 | 606 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0743920 | Msa0748180 | 0.994941 | 1.459108e-211 | -8.615850e-47 |
| Msa0748180 | Msa0864230 | 0.994392 | 7.089436e-207 | -8.615850e-47 |
| Msa0748180 | Msa1071040 | 0.807880 | 4.072200e-50 | -8.615850e-47 |
| Msa0748180 | Msa1159030 | 0.809079 | 2.259147e-50 | -8.615850e-47 |
| Msa0748180 | Msa1163980 | 0.817818 | 2.706748e-52 | -8.615850e-47 |
| Msa0748180 | Msa1428870 | 0.943716 | 7.277545e-103 | -8.615850e-47 |
| Msa0139110 | Msa0748180 | 0.995515 | 4.812047e-217 | -8.615850e-47 |
| Msa0149980 | Msa0748180 | 0.803274 | 3.769457e-49 | -8.615850e-47 |
| Msa0252470 | Msa0748180 | 0.814338 | 1.621039e-51 | -8.615850e-47 |
| Msa0291960 | Msa0748180 | 0.812648 | 3.813775e-51 | -8.615850e-47 |
| Msa0333220 | Msa0748180 | 0.821815 | 3.304326e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748180 | MtrunA17_Chr5g0446321 | 90.164 | 366 | 34 | 1 | 30 | 395 | 1 | 364 | 0.0 | 606 |
| Msa0748180 | MtrunA17_Chr3g0078241 | 34.973 | 183 | 95 | 6 | 212 | 374 | 282 | 460 | 4.91e-20 | 92.0 |
| Msa0748180 | MtrunA17_Chr2g0303951 | 32.973 | 185 | 104 | 6 | 211 | 379 | 286 | 466 | 3.32e-19 | 89.7 |
| Msa0748180 | MtrunA17_Chr5g0419741 | 30.526 | 190 | 100 | 5 | 224 | 396 | 126 | 300 | 2.58e-17 | 82.4 |
| Msa0748180 | MtrunA17_Chr3g0122541 | 31.293 | 147 | 82 | 4 | 215 | 342 | 268 | 414 | 1.55e-14 | 75.5 |
| Msa0748180 | MtrunA17_Chr2g0284551 | 30.573 | 157 | 90 | 2 | 203 | 343 | 91 | 244 | 3.21e-14 | 72.8 |
| Msa0748180 | MtrunA17_Chr3g0113611 | 28.671 | 143 | 96 | 4 | 246 | 386 | 129 | 267 | 1.41e-12 | 67.8 |
| Msa0748180 | MtrunA17_Chr5g0437111 | 28.244 | 131 | 90 | 3 | 246 | 374 | 155 | 283 | 9.23e-12 | 65.9 |
| Msa0748180 | MtrunA17_Chr3g0122521 | 32.632 | 95 | 63 | 1 | 249 | 342 | 59 | 153 | 3.96e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748180 | AT1G55900.2 | 60.215 | 279 | 107 | 2 | 116 | 391 | 81 | 358 | 1.02e-120 | 356 |
| Msa0748180 | AT1G55900.1 | 60.289 | 277 | 106 | 2 | 116 | 389 | 81 | 356 | 1.84e-120 | 355 |
| Msa0748180 | AT5G11860.3 | 29.834 | 181 | 105 | 5 | 213 | 374 | 99 | 276 | 2.08e-17 | 82.8 |
| Msa0748180 | AT5G11860.5 | 29.834 | 181 | 105 | 5 | 213 | 374 | 99 | 276 | 2.08e-17 | 82.8 |
| Msa0748180 | AT5G11860.1 | 29.834 | 181 | 105 | 5 | 213 | 374 | 99 | 276 | 2.08e-17 | 82.8 |
| Msa0748180 | AT5G11860.4 | 29.834 | 181 | 105 | 5 | 213 | 374 | 99 | 276 | 2.08e-17 | 82.8 |
| Msa0748180 | AT5G11860.2 | 29.834 | 181 | 105 | 5 | 213 | 374 | 99 | 276 | 2.08e-17 | 82.8 |
| Msa0748180 | AT5G45700.1 | 31.638 | 177 | 98 | 5 | 224 | 381 | 99 | 271 | 4.92e-15 | 75.5 |
| Msa0748180 | AT1G29780.1 | 31.169 | 154 | 88 | 4 | 224 | 360 | 51 | 203 | 1.44e-14 | 73.2 |
| Msa0748180 | AT5G46410.2 | 31.737 | 167 | 95 | 5 | 224 | 374 | 285 | 448 | 1.50e-14 | 75.9 |
| Msa0748180 | AT5G46410.3 | 31.737 | 167 | 95 | 5 | 224 | 374 | 282 | 445 | 1.58e-14 | 75.5 |
| Msa0748180 | AT5G46410.1 | 31.737 | 167 | 95 | 5 | 224 | 374 | 282 | 445 | 1.58e-14 | 75.5 |
| Msa0748180 | AT3G55960.1 | 30.075 | 133 | 85 | 4 | 246 | 374 | 155 | 283 | 1.23e-13 | 71.6 |
| Msa0748180 | AT1G29770.1 | 29.032 | 155 | 91 | 4 | 224 | 360 | 104 | 257 | 4.91e-12 | 66.6 |
Find 146 sgRNAs with CRISPR-Local
Find 426 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATATTTGATTTCTAAAA+TGG | 0.149532 | 5_2:-1314141 | Msa0748180:three_prime_UTR |
| GCAATAAAATCCTAAAATTT+AGG | 0.175512 | 5_2:+1314081 | None:intergenic |
| GTCTGCACCCATGGCTTAAT+AGG | 0.239907 | 5_2:+1315552 | None:intergenic |
| AGAATCGAGATCGGAGAATT+TGG | 0.254120 | 5_2:+1320198 | None:intergenic |
| AAACATTGATTCACTACATT+TGG | 0.275640 | 5_2:-1316453 | Msa0748180:CDS |
| GGATCCAGCCTTTCTATAAC+AGG | 0.280220 | 5_2:+1316009 | None:intergenic |
| ACCCGGAGTTGATGCCTTCT+TGG | 0.287511 | 5_2:-1316189 | Msa0748180:CDS |
| TAAAGCAGTAGAGCTTTATT+TGG | 0.300211 | 5_2:-1316705 | Msa0748180:CDS |
| TCTTCACTTTCATTTCAAAC+TGG | 0.317230 | 5_2:+1314199 | None:intergenic |
| TGCTCCTGAGGAAGCAAATC+TGG | 0.325320 | 5_2:+1316508 | None:intergenic |
| TGAGGAAATTCCAGCGGTTA+GGG | 0.343277 | 5_2:+1319961 | None:intergenic |
| GGGGAAGCGGTGGAAGAAAA+AGG | 0.345345 | 5_2:+1319981 | None:intergenic |
| CCTTCCAGATTTGCTTCCTC+AGG | 0.348453 | 5_2:-1316512 | Msa0748180:CDS |
| GGCCTACATAATTCTGTTGT+CGG | 0.351425 | 5_2:-1314384 | Msa0748180:three_prime_UTR |
| AAGAGGTTCAGGTAGGGTTT+TGG | 0.354118 | 5_2:+1320266 | None:intergenic |
| ACCGGCTACGGCGGTGGTTC+CGG | 0.354192 | 5_2:+1319914 | None:intergenic |
| AGCTCAGTTCTTTGAAATAG+TGG | 0.368246 | 5_2:-1316159 | Msa0748180:CDS |
| TTGGAGAGACATTGTTGTTA+TGG | 0.371901 | 5_2:+1320217 | None:intergenic |
| AAATGAAATGAAAGAGGTTC+AGG | 0.372153 | 5_2:+1320255 | None:intergenic |
| GAGAAACATGGAGGAGGTTG+AGG | 0.375735 | 5_2:+1320122 | None:intergenic |
| GAGACCTGCTACTAAGTATC+AGG | 0.375953 | 5_2:-1315959 | Msa0748180:CDS |
| GGAGGAGGAGTGGCGGAAGA+AGG | 0.377139 | 5_2:+1320011 | None:intergenic |
| ATGGTTCAAGACTCTAGTTC+AGG | 0.377307 | 5_2:+1314415 | None:intergenic |
| GTAGCGGAAGAGGGAGGAGG+TGG | 0.379260 | 5_2:+1320041 | None:intergenic |
| GAATGCTTAAATTTCCGTTA+AGG | 0.385398 | 5_2:-1314302 | Msa0748180:three_prime_UTR |
| ACTCTTGTTCAAGTTTCAAT+TGG | 0.392948 | 5_2:-1314253 | Msa0748180:three_prime_UTR |
| GGAGGAGTGGCGGAAGAAGG+TGG | 0.394550 | 5_2:+1320014 | None:intergenic |
| GAAGAGGGAGGAGGTGGAGA+AGG | 0.401258 | 5_2:+1320047 | None:intergenic |
| AGGTGGAGGAGTAGCGGAAG+AGG | 0.403611 | 5_2:+1320031 | None:intergenic |
| TCCAAATGATGCAGGAAAAC+CGG | 0.404155 | 5_2:-1314612 | Msa0748180:intron |
| TACGGCGGTGGTTCCGGTTA+AGG | 0.406728 | 5_2:+1319920 | None:intergenic |
| TTGAGGAAATTCCAGCGGTT+AGG | 0.408146 | 5_2:+1319960 | None:intergenic |
| GTGCAAACTTCTGTAATTTG+AGG | 0.410329 | 5_2:+1314276 | None:intergenic |
| AGGATCTTTCAAAACTAAAC+AGG | 0.413308 | 5_2:-1315644 | Msa0748180:CDS |
| GTAATTTGAGGAGTCCTTAA+CGG | 0.414369 | 5_2:+1314288 | None:intergenic |
| CGAACCGTAAGAGGCGTAAC+CGG | 0.415603 | 5_2:+1319896 | None:intergenic |
| GCTGCCATCGGTGCCTTAAC+CGG | 0.417543 | 5_2:-1319933 | Msa0748180:CDS |
| GAAGGAGTGGCAGAAGGAGG+AGG | 0.419573 | 5_2:+1320065 | None:intergenic |
| GGTTTATTGAAGAACACGTT+AGG | 0.429285 | 5_2:-1316673 | Msa0748180:CDS |
| GTATACAGATGAACAGAATA+TGG | 0.431740 | 5_2:-1316135 | Msa0748180:intron |
| ATAGAACACTAATTTAGATA+TGG | 0.431852 | 5_2:-1314114 | Msa0748180:three_prime_UTR |
| TCTGCACCCATGGCTTAATA+GGG | 0.437365 | 5_2:+1315553 | None:intergenic |
| AAATTTAGGTTGGTTGTTGA+AGG | 0.444026 | 5_2:-1314744 | Msa0748180:intron |
| CACCGATGGCAGCGTATTTG+AGG | 0.444864 | 5_2:+1319943 | None:intergenic |
| AGGAGGAGGTGGAGGAGGAG+TGG | 0.447975 | 5_2:+1320001 | None:intergenic |
| CAGGCGTTTCAAATTGCATA+AGG | 0.448133 | 5_2:-1315293 | Msa0748180:CDS |
| GGAGTAGCGGAAGAGGGAGG+AGG | 0.449116 | 5_2:+1320038 | None:intergenic |
| AGGAGGTGGAGGAGGAGTGG+CGG | 0.449841 | 5_2:+1320004 | None:intergenic |
| TGGATCCTAAGCACTGCATT+AGG | 0.453716 | 5_2:-1315993 | Msa0748180:CDS |
| ATTCCAGCGGTTAGGGGAAG+CGG | 0.455791 | 5_2:+1319968 | None:intergenic |
| GGTGGAGGAGTAGCGGAAGA+GGG | 0.456550 | 5_2:+1320032 | None:intergenic |
| TTATATCAGCCGGGCTAGTA+CGG | 0.463174 | 5_2:+1315365 | None:intergenic |
| GGGAGGAGGTGGAGAAGGAG+TGG | 0.463546 | 5_2:+1320052 | None:intergenic |
| AGTAGCAGCAGGAGCGGCGG+TGG | 0.464184 | 5_2:+1320097 | None:intergenic |
| GGTGGAGAAGGAGTGGCAGA+AGG | 0.464320 | 5_2:+1320059 | None:intergenic |
| CCATCCTGATACTTAGTAGC+AGG | 0.468851 | 5_2:+1315955 | None:intergenic |
| GGAGTGGCAGAAGGAGGAGG+AGG | 0.468973 | 5_2:+1320068 | None:intergenic |
| AGGAGGTTGAGGAGTGACTT+TGG | 0.474619 | 5_2:+1320133 | None:intergenic |
| TTATGCTTGCAGAAATTTCA+AGG | 0.477158 | 5_2:-1318169 | Msa0748180:intron |
| GGAGAAGGAGTGGCAGAAGG+AGG | 0.479566 | 5_2:+1320062 | None:intergenic |
| CCAGAGGCGTCTCTGTCCTC+CGG | 0.480081 | 5_2:+1314593 | None:intergenic |
| GGCGTAACCGGCTACGGCGG+TGG | 0.481279 | 5_2:+1319908 | None:intergenic |
| AGCACTGGTCTTATATCAGC+CGG | 0.483378 | 5_2:+1315355 | None:intergenic |
| CTTCACTTTCATTTCAAACT+GGG | 0.483745 | 5_2:+1314200 | None:intergenic |
| GGAAGGAGCTTGTCTGTGTA+TGG | 0.485204 | 5_2:+1316529 | None:intergenic |
| CACTCGGAATATCACATCCT+TGG | 0.486830 | 5_2:+1315323 | None:intergenic |
| TTAATAGGGACACAGTTCTC+AGG | 0.487617 | 5_2:+1315567 | None:intergenic |
| CTAAGCACTGCATTAGGTAC+AGG | 0.494989 | 5_2:-1315987 | Msa0748180:CDS |
| TTGCATTTGCAAAATGAAGT+TGG | 0.498368 | 5_2:-1314171 | Msa0748180:three_prime_UTR |
| TTGTAGACCCTGTTATAGAA+AGG | 0.499591 | 5_2:-1316017 | Msa0748180:CDS |
| GCAAAAGTTATGTACTTAAG+TGG | 0.505360 | 5_2:-1315615 | Msa0748180:CDS |
| GCTTGGCTTGGTGGAGACGC+CGG | 0.505360 | 5_2:+1320288 | None:intergenic |
| TTCAGTATTGTTACTTCCAG+AGG | 0.505530 | 5_2:+1314577 | None:intergenic |
| TAAAGCTCTACTGCTTTAGC+AGG | 0.507689 | 5_2:+1316710 | None:intergenic |
| AAAGCTTAACAGAGTTGATC+CGG | 0.510006 | 5_2:-1320307 | None:intergenic |
| AGACCCTGTTATAGAAAGGC+TGG | 0.510757 | 5_2:-1316013 | Msa0748180:CDS |
| TTCCAAGAAGGCATCAACTC+CGG | 0.511667 | 5_2:+1316187 | None:intergenic |
| CCTTGGTAAGACTGCAGCAC+TGG | 0.513048 | 5_2:+1315340 | None:intergenic |
| GGAGGAGTAGCGGAAGAGGG+AGG | 0.513402 | 5_2:+1320035 | None:intergenic |
| TATATCAGCCGGGCTAGTAC+GGG | 0.517337 | 5_2:+1315366 | None:intergenic |
| TCTTTATCAGTCTGCACCCA+TGG | 0.518730 | 5_2:+1315543 | None:intergenic |
| GTAATGTGCAGCTTATAGTT+CGG | 0.523902 | 5_2:-1319744 | Msa0748180:intron |
| CCGGAGGACAGAGACGCCTC+TGG | 0.524054 | 5_2:-1314593 | Msa0748180:CDS |
| TTATAGTTCGGACGAAATTG+AGG | 0.524378 | 5_2:-1319732 | Msa0748180:CDS |
| TCCAAGAAGGCATCAACTCC+GGG | 0.525377 | 5_2:+1316188 | None:intergenic |
| GTAGCCGGTTACGCCTCTTA+CGG | 0.529718 | 5_2:-1319900 | Msa0748180:intron |
| TGAATGAAATGAAATGAAAG+AGG | 0.529892 | 5_2:+1320249 | None:intergenic |
| GGACACAGTTCTCAGGTTGT+AGG | 0.531104 | 5_2:+1315574 | None:intergenic |
| TAAAGATGATACAGCTCTTG+TGG | 0.533851 | 5_2:-1315526 | Msa0748180:CDS |
| CTGTACCTAATGCAGTGCTT+AGG | 0.536001 | 5_2:+1315988 | None:intergenic |
| TCGAGAGAAGTAGCTCCATC+AGG | 0.536228 | 5_2:+1319668 | None:intergenic |
| GGAGGTGAATGAGTAGCAGC+AGG | 0.536311 | 5_2:+1320086 | None:intergenic |
| AGCTTTATTTGGATGCAAGA+AGG | 0.537430 | 5_2:-1316694 | Msa0748180:CDS |
| ATATTCCGAGTGAATTCCTC+AGG | 0.538760 | 5_2:-1315312 | Msa0748180:CDS |
| GGAGTGGCGGAAGAAGGTGG+AGG | 0.539928 | 5_2:+1320017 | None:intergenic |
| GTTTATTGAAGAACACGTTA+GGG | 0.542013 | 5_2:-1316672 | Msa0748180:intron |
| GTATACTCAACTGCAGTGAC+AGG | 0.543024 | 5_2:-1318142 | Msa0748180:intron |
| CTTGCAGAAATTTCAAGGGA+TGG | 0.544133 | 5_2:-1318164 | Msa0748180:intron |
| GAAATGAAAGAGGTTCAGGT+AGG | 0.550193 | 5_2:+1320259 | None:intergenic |
| ACCGGAACCACCGCCGTAGC+CGG | 0.551106 | 5_2:-1319915 | Msa0748180:CDS |
| TGGTTCAAGACTCTAGTTCA+GGG | 0.553194 | 5_2:+1314416 | None:intergenic |
| CCACCGCTTCCCCTAACCGC+TGG | 0.553504 | 5_2:-1319971 | Msa0748180:CDS |
| TATGCTTGCAGAAATTTCAA+GGG | 0.560032 | 5_2:-1318168 | Msa0748180:intron |
| GTGACTTTGGCGAAGCGGAA+TGG | 0.560847 | 5_2:+1320146 | None:intergenic |
| GTAGGCAACTTTCTAAAGCA+TGG | 0.562469 | 5_2:+1315592 | None:intergenic |
| CCTGCTACTAAGTATCAGGA+TGG | 0.566998 | 5_2:-1315955 | Msa0748180:CDS |
| CTGTGTCCCTATTAAGCCAT+GGG | 0.571381 | 5_2:-1315559 | Msa0748180:CDS |
| TTCCTCAAATACGCTGCCAT+CGG | 0.575985 | 5_2:-1319945 | Msa0748180:CDS |
| TGAATGAGTAGCAGCAGGAG+CGG | 0.576769 | 5_2:+1320091 | None:intergenic |
| ATCAGGTGGAGTGTACTTAG+CGG | 0.577775 | 5_2:+1319685 | None:intergenic |
| GCTAAGTACACTCCACCTGA+TGG | 0.578725 | 5_2:-1319683 | Msa0748180:CDS |
| AGTTATTGCCCGTACTAGCC+CGG | 0.582795 | 5_2:-1315374 | Msa0748180:CDS |
| TTTGAAATGAAAGTGAAGAG+TGG | 0.583317 | 5_2:-1314195 | Msa0748180:three_prime_UTR |
| AAATGAAAGAGGTTCAGGTA+GGG | 0.586182 | 5_2:+1320260 | None:intergenic |
| ATTGATTCACTACATTTGGA+CGG | 0.591226 | 5_2:-1316449 | Msa0748180:intron |
| GAGGAATGCACTTACACTCA+AGG | 0.594742 | 5_2:+1315490 | None:intergenic |
| GTAAGAGGCGTAACCGGCTA+CGG | 0.595627 | 5_2:+1319902 | None:intergenic |
| ATGTGAAGCGAGATACAAGC+TGG | 0.600307 | 5_2:-1316226 | Msa0748180:intron |
| GGAAGAAGGTGGAGGAGTAG+CGG | 0.600482 | 5_2:+1320025 | None:intergenic |
| ACTGTGTCCCTATTAAGCCA+TGG | 0.604101 | 5_2:-1315560 | Msa0748180:CDS |
| TACCGACAACAGAATTATGT+AGG | 0.612471 | 5_2:+1314382 | None:intergenic |
| CGACGGAGAAGAATCGAGAT+CGG | 0.613375 | 5_2:+1320189 | None:intergenic |
| TTGAAGCCACTGCAAAATCG+AGG | 0.614160 | 5_2:-1314481 | Msa0748180:three_prime_UTR |
| GGTTCCGGTTAAGGCACCGA+TGG | 0.615001 | 5_2:+1319929 | None:intergenic |
| CCTGAGGAAGCAAATCTGGA+AGG | 0.622399 | 5_2:+1316512 | None:intergenic |
| ATGCACTTACACTCAAGGAA+TGG | 0.623566 | 5_2:+1315495 | None:intergenic |
| CGATGACGATGATGCTGCGA+CGG | 0.623580 | 5_2:+1320172 | None:intergenic |
| GTGGATGAGAAACATGGAGG+AGG | 0.623914 | 5_2:+1320116 | None:intergenic |
| CTGAGCTAGATGTTCCAAGA+AGG | 0.625883 | 5_2:+1316175 | None:intergenic |
| AGAGAAGTAGCTCCATCAGG+TGG | 0.626174 | 5_2:+1319671 | None:intergenic |
| GCACTGGTCTTATATCAGCC+GGG | 0.635398 | 5_2:+1315356 | None:intergenic |
| GAGGAGTGACTTTGGCGAAG+CGG | 0.636601 | 5_2:+1320141 | None:intergenic |
| ATGAGTAGCAGCAGGAGCGG+CGG | 0.640320 | 5_2:+1320094 | None:intergenic |
| GCGGCGGTGGATGAGAAACA+TGG | 0.643040 | 5_2:+1320110 | None:intergenic |
| CCAGCGGTTAGGGGAAGCGG+TGG | 0.643133 | 5_2:+1319971 | None:intergenic |
| CTGCTACTAAGTATCAGGAT+GGG | 0.644510 | 5_2:-1315954 | Msa0748180:CDS |
| GTGAACACATGTTGCTCCTG+AGG | 0.649088 | 5_2:+1316496 | None:intergenic |
| GAGGAAATTCCAGCGGTTAG+GGG | 0.651443 | 5_2:+1319962 | None:intergenic |
| AAACGCCTGAGGAATTCACT+CGG | 0.654658 | 5_2:+1315307 | None:intergenic |
| GATCCAGCCTTTCTATAACA+GGG | 0.661553 | 5_2:+1316010 | None:intergenic |
| CGTATTTGAGGAAATTCCAG+CGG | 0.669655 | 5_2:+1319955 | None:intergenic |
| CCAGTGCTGCAGTCTTACCA+AGG | 0.672246 | 5_2:-1315340 | Msa0748180:CDS |
| TATGCAATTTGAAACGCCTG+AGG | 0.679211 | 5_2:+1315296 | None:intergenic |
| AAATGATGCAGGAAAACCGG+AGG | 0.687211 | 5_2:-1314609 | Msa0748180:intron |
| AGAGGCGTAACCGGCTACGG+CGG | 0.690683 | 5_2:+1319905 | None:intergenic |
| GCGGTGGATGAGAAACATGG+AGG | 0.755481 | 5_2:+1320113 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATTATATATTTAA+AGG | + | chr5_2:1316280-1316299 | None:intergenic | 0.0% |
| !!! | TTTTATGATATGATAATTAA+CGG | - | chr5_2:1316884-1316903 | Msa0748180:intron | 10.0% |
| !! | TTATTATAATAATATTGACA+CGG | - | chr5_2:1317495-1317514 | Msa0748180:intron | 10.0% |
| !!! | TTAACTGATTTAAAAAATTT+GGG | - | chr5_2:1319096-1319115 | Msa0748180:intron | 10.0% |
| !!! | AATATATTTGATTTCTAAAA+TGG | - | chr5_2:1320198-1320217 | Msa0748180:CDS | 10.0% |
| !! | TAACATATTAAAATGACTAA+AGG | + | chr5_2:1315608-1315627 | None:intergenic | 15.0% |
| !!! | ATTTTTACTGTTTTGTTTAT+TGG | - | chr5_2:1316012-1316031 | Msa0748180:CDS | 15.0% |
| !! | TCATAGAAATATCTATTATA+CGG | - | chr5_2:1317121-1317140 | Msa0748180:intron | 15.0% |
| !! | TATTATAATAATATTGACAC+GGG | - | chr5_2:1317496-1317515 | Msa0748180:intron | 15.0% |
| !! | AAATATCAAATATCTTTGAA+TGG | - | chr5_2:1317952-1317971 | Msa0748180:intron | 15.0% |
| !! | AATATCAAATATCTTTGAAT+GGG | - | chr5_2:1317953-1317972 | Msa0748180:intron | 15.0% |
| !! | ATTAATGCTATGAAAATTTA+TGG | - | chr5_2:1317986-1318005 | Msa0748180:intron | 15.0% |
| !! | AGTAAAAATCAACATTATAT+AGG | + | chr5_2:1318083-1318102 | None:intergenic | 15.0% |
| !!! | TGTTGATTTTTACTTTTATT+TGG | - | chr5_2:1318089-1318108 | Msa0748180:intron | 15.0% |
| !!! | CTTAACTGATTTAAAAAATT+TGG | - | chr5_2:1319095-1319114 | Msa0748180:intron | 15.0% |
| !! | CTAAATTTATATCATATGTA+AGG | + | chr5_2:1319583-1319602 | None:intergenic | 15.0% |
| !! | CTTACATATGATATAAATTT+AGG | - | chr5_2:1319581-1319600 | Msa0748180:intron | 15.0% |
| !!! | AAATCTACATTTTATCTATT+TGG | + | chr5_2:1319894-1319913 | None:intergenic | 15.0% |
| !!! | AGTAATAAAACCTAAATTTT+AGG | - | chr5_2:1320248-1320267 | Msa0748180:CDS | 15.0% |
| !! | TATTTATTTGTTTGATGAAG+TGG | - | chr5_2:1315309-1315328 | Msa0748180:CDS | 20.0% |
| !!! | TTTTGTTTCTTGTTTTTAGT+CGG | + | chr5_2:1315857-1315876 | None:intergenic | 20.0% |
| !! | TAACATATTAAACTGACTAA+AGG | + | chr5_2:1316113-1316132 | None:intergenic | 20.0% |
| !! | AGTCAGTTTAATATGTTAAT+AGG | - | chr5_2:1316115-1316134 | Msa0748180:intron | 20.0% |
| !! | TATCTTATATCAGTATTGTT+CGG | - | chr5_2:1316252-1316271 | Msa0748180:intron | 20.0% |
| !! | TAATCATATCAATATGTAGT+AGG | - | chr5_2:1316810-1316829 | Msa0748180:intron | 20.0% |
| !! | AATCATATCAATATGTAGTA+GGG | - | chr5_2:1316811-1316830 | Msa0748180:intron | 20.0% |
| !! | ATTATAATAATATTGACACG+GGG | - | chr5_2:1317497-1317516 | Msa0748180:intron | 20.0% |
| !!! | ATATTTTTATATCCCCAAAA+CGG | + | chr5_2:1317938-1317957 | None:intergenic | 20.0% |
| !!! | AATTACATTTTATAGTTCAC+AGG | - | chr5_2:1319263-1319282 | Msa0748180:intron | 20.0% |
| !! | TCAAAAATGAGATACAAAAA+TGG | - | chr5_2:1319421-1319440 | Msa0748180:intron | 20.0% |
| !! | CAAAAATGAGATACAAAAAT+GGG | - | chr5_2:1319422-1319441 | Msa0748180:intron | 20.0% |
| !! | AAAAATGAGATACAAAAATG+GGG | - | chr5_2:1319423-1319442 | Msa0748180:intron | 20.0% |
| !! | AAATCCAGATATTAAATGAT+TGG | + | chr5_2:1319465-1319484 | None:intergenic | 20.0% |
| !! | CATATGATATAAATTTAGGT+TGG | - | chr5_2:1319585-1319604 | Msa0748180:intron | 20.0% |
| !! | ATAGAACACTAATTTAGATA+TGG | - | chr5_2:1320225-1320244 | Msa0748180:CDS | 20.0% |
| !! | GCAATAAAATCCTAAAATTT+AGG | + | chr5_2:1320261-1320280 | None:intergenic | 20.0% |
| ! | TGAATGAAATGAAATGAAAG+AGG | + | chr5_2:1314093-1314112 | None:intergenic | 25.0% |
| !!! | CGAATTTTTGTTTGATGAAA+TGG | - | chr5_2:1314811-1314830 | Msa0748180:intron | 25.0% |
| !! | ATTTTCTTACATTACTACCA+GGG | - | chr5_2:1314912-1314931 | Msa0748180:intron | 25.0% |
| ! | CCAATAAATTGACAAAATGT+GGG | + | chr5_2:1315396-1315415 | None:intergenic | 25.0% |
| ! | TCCAATAAATTGACAAAATG+TGG | + | chr5_2:1315397-1315416 | None:intergenic | 25.0% |
| !! | ACATTTTGTCAATTTATTGG+AGG | - | chr5_2:1315396-1315415 | Msa0748180:intron | 25.0% |
| ! | GACTAAAAACAAGAAACAAA+AGG | - | chr5_2:1315856-1315875 | Msa0748180:intron | 25.0% |
| ! | ATATCAACCTACTAATGTTA+AGG | + | chr5_2:1316141-1316160 | None:intergenic | 25.0% |
| ! | CAATACTGATATAAGATAAG+TGG | + | chr5_2:1316250-1316269 | None:intergenic | 25.0% |
| ! | AAATCACAAAAGAGATTTAG+TGG | + | chr5_2:1316734-1316753 | None:intergenic | 25.0% |
| ! | ATCATATCAATATGTAGTAG+GGG | - | chr5_2:1316812-1316831 | Msa0748180:intron | 25.0% |
| ! | TTGGTTTAGTTGTATTGTTA+AGG | - | chr5_2:1317200-1317219 | Msa0748180:intron | 25.0% |
| ! | TTTAGTTGTATTGTTAAGGA+GGG | - | chr5_2:1317204-1317223 | Msa0748180:intron | 25.0% |
| !!! | TGCCTTTTAAAATCATTAGA+CGG | - | chr5_2:1317367-1317386 | Msa0748180:intron | 25.0% |
| ! | TCTTGTAGAAGAATCAAATT+TGG | + | chr5_2:1317532-1317551 | None:intergenic | 25.0% |
| ! | TACACATGTACAAACTAATT+TGG | + | chr5_2:1317558-1317577 | None:intergenic | 25.0% |
| !! | TGCTTTTACTTCTCTAATTT+TGG | - | chr5_2:1317698-1317717 | Msa0748180:intron | 25.0% |
| ! | ATTAAAAGTTTAACACAAGG+TGG | + | chr5_2:1317755-1317774 | None:intergenic | 25.0% |
| ! | AGCATTAAAAGTTTAACACA+AGG | + | chr5_2:1317758-1317777 | None:intergenic | 25.0% |
| !! | GTGTTAAACTTTTAATGCTT+TGG | - | chr5_2:1317759-1317778 | Msa0748180:intron | 25.0% |
| !!! | AAACATTGATTCACTACATT+TGG | - | chr5_2:1317886-1317905 | Msa0748180:intron | 25.0% |
| ! | CAGTATCAAAATAAAATGAC+AGG | + | chr5_2:1318610-1318629 | None:intergenic | 25.0% |
| ! | TCATTTAAATACATCTCAAG+AGG | + | chr5_2:1318871-1318890 | None:intergenic | 25.0% |
| ! | ATAACAAAAGAACAAAACCT+TGG | + | chr5_2:1319135-1319154 | None:intergenic | 25.0% |
| ! | AAATGTAATTAACCAGACAA+GGG | + | chr5_2:1319253-1319272 | None:intergenic | 25.0% |
| ! | AAAATGTAATTAACCAGACA+AGG | + | chr5_2:1319254-1319273 | None:intergenic | 25.0% |
| !!! | TGCATATTTTGGCTTTTTTT+CGG | - | chr5_2:1319396-1319415 | Msa0748180:intron | 25.0% |
| ! | TATCATATGTAAGGTGAATT+AGG | + | chr5_2:1319574-1319593 | None:intergenic | 25.0% |
| !!! | GCTAAACAGGAATTTTTTTT+AGG | - | chr5_2:1319645-1319664 | Msa0748180:intron | 25.0% |
| AAATGAAATGAAAGAGGTTC+AGG | + | chr5_2:1314087-1314106 | None:intergenic | 30.0% | |
| ! | TTTCTTGAATCGTATTGATC+TGG | - | chr5_2:1314521-1314540 | Msa0748180:exon | 30.0% |
| ! | CATTTTCTTACATTACTACC+AGG | - | chr5_2:1314911-1314930 | Msa0748180:intron | 30.0% |
| AATTATGACAAAACTCAGCA+TGG | - | chr5_2:1314959-1314978 | Msa0748180:intron | 30.0% | |
| ATTCACTGTAATCACATATG+TGG | - | chr5_2:1315184-1315203 | Msa0748180:intron | 30.0% | |
| TTCACTGTAATCACATATGT+GGG | - | chr5_2:1315185-1315204 | Msa0748180:intron | 30.0% | |
| ! | CCCACATTTTGTCAATTTAT+TGG | - | chr5_2:1315393-1315412 | Msa0748180:intron | 30.0% |
| TTGGATGTAACACTTTGATA+TGG | - | chr5_2:1315429-1315448 | Msa0748180:intron | 30.0% | |
| TAATAGACCTCAACATTAGT+AGG | - | chr5_2:1315626-1315645 | Msa0748180:CDS | 30.0% | |
| AAACAAAAGGCCTAAAAACA+GGG | - | chr5_2:1315869-1315888 | Msa0748180:intron | 30.0% | |
| GACTAAAAACAGGAAACAAA+AGG | - | chr5_2:1315899-1315918 | Msa0748180:intron | 30.0% | |
| AAACAAAAGGCCTAAAAACA+GGG | - | chr5_2:1315869-1315888 | Msa0748180:intron | 30.0% | |
| TTAAGTTCATGTTGCATAAG+AGG | + | chr5_2:1315981-1316000 | None:intergenic | 30.0% | |
| ! | GTTTATTGGAATTCCTTTTG+TGG | - | chr5_2:1316026-1316045 | Msa0748180:intron | 30.0% |
| TAATAGGCCTTAACATTAGT+AGG | - | chr5_2:1316131-1316150 | Msa0748180:intron | 30.0% | |
| TTATGCTTGCAGAAATTTCA+AGG | - | chr5_2:1316170-1316189 | Msa0748180:CDS | 30.0% | |
| TATGCTTGCAGAAATTTCAA+GGG | - | chr5_2:1316171-1316190 | Msa0748180:CDS | 30.0% | |
| TGTAAAAGTGATCCTTCTTT+CGG | + | chr5_2:1316611-1316630 | None:intergenic | 30.0% | |
| AAGTACAAACATGAATCGAA+TGG | - | chr5_2:1316699-1316718 | Msa0748180:CDS | 30.0% | |
| ! | GTGATTTTGTGTAGTTATCT+TGG | - | chr5_2:1316747-1316766 | Msa0748180:intron | 30.0% |
| GTTTAGTTGTATTGTTAAGG+AGG | - | chr5_2:1317203-1317222 | Msa0748180:intron | 30.0% | |
| ACAAATCCAAAAATCAAACG+TGG | - | chr5_2:1317279-1317298 | Msa0748180:intron | 30.0% | |
| !! | ATTATGCCACGTTTGATTTT+TGG | + | chr5_2:1317288-1317307 | None:intergenic | 30.0% |
| CCAATTTAATTCTAATGCAC+CGG | - | chr5_2:1317326-1317345 | Msa0748180:intron | 30.0% | |
| AAGTTTCCTCAAAATCAAAC+CGG | + | chr5_2:1317348-1317367 | None:intergenic | 30.0% | |
| ! | TGCCGTCTAATGATTTTAAA+AGG | + | chr5_2:1317372-1317391 | None:intergenic | 30.0% |
| ! | ATCATTAGACGGCATATTTT+AGG | - | chr5_2:1317378-1317397 | Msa0748180:intron | 30.0% |
| AACGAAATCTCCTAAAAGTA+TGG | - | chr5_2:1317434-1317453 | Msa0748180:intron | 30.0% | |
| ! | ATGTGATATGCCATACTTTT+AGG | + | chr5_2:1317447-1317466 | None:intergenic | 30.0% |
| !! | TAAAGCAGTAGAGCTTTATT+TGG | - | chr5_2:1317634-1317653 | Msa0748180:intron | 30.0% |
| GTTTATTGAAGAACACGTTA+GGG | - | chr5_2:1317667-1317686 | Msa0748180:intron | 30.0% | |
| GTGGAAAAACATGAAAAGAA+AGG | + | chr5_2:1317736-1317755 | None:intergenic | 30.0% | |
| ! | ATTGATTCACTACATTTGGA+CGG | - | chr5_2:1317890-1317909 | Msa0748180:intron | 30.0% |
| GTATACAGATGAACAGAATA+TGG | - | chr5_2:1318204-1318223 | Msa0748180:intron | 30.0% | |
| ! | TTGTTTCTCTGTATTCTGAA+TGG | - | chr5_2:1318237-1318256 | Msa0748180:intron | 30.0% |
| ATGTCTTTAGTATGTTCTTC+AGG | + | chr5_2:1318562-1318581 | None:intergenic | 30.0% | |
| AAAATGACAGGAAAAAGCAA+AGG | + | chr5_2:1318598-1318617 | None:intergenic | 30.0% | |
| !! | ATTTTGATACTGCACAAATG+TGG | - | chr5_2:1318618-1318637 | Msa0748180:intron | 30.0% |
| AGGATCTTTCAAAACTAAAC+AGG | - | chr5_2:1318695-1318714 | Msa0748180:intron | 30.0% | |
| ! | CTTAAGTACATAACTTTTGC+AGG | + | chr5_2:1318724-1318743 | None:intergenic | 30.0% |
| GCAAAAGTTATGTACTTAAG+TGG | - | chr5_2:1318724-1318743 | Msa0748180:intron | 30.0% | |
| CAATAACTGCATATGGATAA+TGG | + | chr5_2:1318953-1318972 | None:intergenic | 30.0% | |
| ! | TTTTCCATTACAAATCTGTG+AGG | - | chr5_2:1319297-1319316 | Msa0748180:intron | 30.0% |
| TTGCTTCTATTATTGCTGTA+TGG | - | chr5_2:1319321-1319340 | Msa0748180:intron | 30.0% | |
| TTGATGCAAAAGTTAAGTAG+AGG | - | chr5_2:1319373-1319392 | Msa0748180:intron | 30.0% | |
| !! | TTAAGTAGAGGTGCATATTT+TGG | - | chr5_2:1319385-1319404 | Msa0748180:intron | 30.0% |
| ! | ACGTGAAGTTAATTTTCTTG+TGG | - | chr5_2:1319512-1319531 | Msa0748180:intron | 30.0% |
| !! | AAATTTAGGTTGGTTGTTGA+AGG | - | chr5_2:1319595-1319614 | Msa0748180:intron | 30.0% |
| ! | ACAAATAGTTGATGCTAAAC+AGG | - | chr5_2:1319632-1319651 | Msa0748180:intron | 30.0% |
| AAACACCAGAGTAAAAATGT+TGG | + | chr5_2:1319707-1319726 | None:intergenic | 30.0% | |
| !!! | AGTCTTGAACCATCATTTTT+TGG | - | chr5_2:1319934-1319953 | Msa0748180:CDS | 30.0% |
| TTATGTAGGCCAAAAAATGA+TGG | + | chr5_2:1319946-1319965 | None:intergenic | 30.0% | |
| GAATGCTTAAATTTCCGTTA+AGG | - | chr5_2:1320037-1320056 | Msa0748180:CDS | 30.0% | |
| ! | ACTCTTGTTCAAGTTTCAAT+TGG | - | chr5_2:1320086-1320105 | Msa0748180:CDS | 30.0% |
| CTTCACTTTCATTTCAAACT+GGG | + | chr5_2:1320142-1320161 | None:intergenic | 30.0% | |
| TCTTCACTTTCATTTCAAAC+TGG | + | chr5_2:1320143-1320162 | None:intergenic | 30.0% | |
| ! | TTTGAAATGAAAGTGAAGAG+TGG | - | chr5_2:1320144-1320163 | Msa0748180:CDS | 30.0% |
| TTGCATTTGCAAAATGAAGT+TGG | - | chr5_2:1320168-1320187 | Msa0748180:CDS | 30.0% | |
| AAATGAAAGAGGTTCAGGTA+GGG | + | chr5_2:1314082-1314101 | None:intergenic | 35.0% | |
| ! | TTGGAGAGACATTGTTGTTA+TGG | + | chr5_2:1314125-1314144 | None:intergenic | 35.0% |
| AGAAAAATACGAACCGTAAG+AGG | + | chr5_2:1314455-1314474 | None:intergenic | 35.0% | |
| CAGTGAAAACAGAAATGAAG+AGG | + | chr5_2:1314482-1314501 | None:intergenic | 35.0% | |
| GTAATGTGCAGCTTATAGTT+CGG | - | chr5_2:1314595-1314614 | Msa0748180:CDS | 35.0% | |
| TTATAGTTCGGACGAAATTG+AGG | - | chr5_2:1314607-1314626 | Msa0748180:intron | 35.0% | |
| ! | ATATCTTCGAACAGAAGTGT+CGG | + | chr5_2:1314857-1314876 | None:intergenic | 35.0% |
| TTATAATCTATCACACTCCC+TGG | + | chr5_2:1314932-1314951 | None:intergenic | 35.0% | |
| TGTTCATGTTTGTGCTTCAT+AGG | + | chr5_2:1315114-1315133 | None:intergenic | 35.0% | |
| ACAAACATGAACATCGAACA+CGG | - | chr5_2:1315121-1315140 | Msa0748180:intron | 35.0% | |
| TTGTCAATTTATTGGAGGTG+TGG | - | chr5_2:1315401-1315420 | Msa0748180:intron | 35.0% | |
| GATGTAACACTTTGATATGG+TGG | - | chr5_2:1315432-1315451 | Msa0748180:intron | 35.0% | |
| TCTGCATTGTTTGAATGTGA+TGG | - | chr5_2:1315570-1315589 | Msa0748180:CDS | 35.0% | |
| ATGTCAACCTACTAATGTTG+AGG | + | chr5_2:1315636-1315655 | None:intergenic | 35.0% | |
| AAACCACATCACCAACATAA+GGG | - | chr5_2:1315826-1315845 | Msa0748180:intron | 35.0% | |
| GAAACAAAAGGCCTAAAAAC+AGG | - | chr5_2:1315868-1315887 | Msa0748180:intron | 35.0% | |
| GAAACAAAAGGCCTAAAAAC+AGG | - | chr5_2:1315868-1315887 | Msa0748180:intron | 35.0% | |
| !! | GTATGTTGTTCCCTGTTTTT+AGG | + | chr5_2:1315925-1315944 | None:intergenic | 35.0% |
| ! | ACAGCACTATTGCTTAGTTT+TGG | - | chr5_2:1316049-1316068 | Msa0748180:intron | 35.0% |
| TGTTGCGTATACATGAACAT+TGG | - | chr5_2:1316342-1316361 | Msa0748180:intron | 35.0% | |
| TGGAACTAAATGGCATATGA+TGG | + | chr5_2:1316369-1316388 | None:intergenic | 35.0% | |
| CATACCCTTGACCTAAATAA+GGG | - | chr5_2:1316387-1316406 | Msa0748180:intron | 35.0% | |
| ! | ACTTCCCTTATTTAGGTCAA+GGG | + | chr5_2:1316394-1316413 | None:intergenic | 35.0% |
| TAAAAGTGATCCTTCTTTCG+GGG | + | chr5_2:1316609-1316628 | None:intergenic | 35.0% | |
| GTAAAAGTGATCCTTCTTTC+GGG | + | chr5_2:1316610-1316629 | None:intergenic | 35.0% | |
| TTGTGTAGTTATCTTGGCTA+TGG | - | chr5_2:1316753-1316772 | Msa0748180:intron | 35.0% | |
| ATTACCAGTGTTGTCAATTG+TGG | + | chr5_2:1317066-1317085 | None:intergenic | 35.0% | |
| ! | TGTACAGAGTACAGTTCTTT+TGG | + | chr5_2:1317100-1317119 | None:intergenic | 35.0% |
| TAACTAGCAAAGAAGTCAAG+TGG | - | chr5_2:1317174-1317193 | Msa0748180:intron | 35.0% | |
| AACTAGCAAAGAAGTCAAGT+GGG | - | chr5_2:1317175-1317194 | Msa0748180:intron | 35.0% | |
| ATCAAACGTGGCATAATTCT+TGG | - | chr5_2:1317291-1317310 | Msa0748180:intron | 35.0% | |
| TCAAACGTGGCATAATTCTT+GGG | - | chr5_2:1317292-1317311 | Msa0748180:intron | 35.0% | |
| CCGGTGCATTAGAATTAAAT+TGG | + | chr5_2:1317329-1317348 | None:intergenic | 35.0% | |
| GGCACTAAAATATTACATGC+AGG | + | chr5_2:1317611-1317630 | None:intergenic | 35.0% | |
| !! | AGCTTTATTTGGATGCAAGA+AGG | - | chr5_2:1317645-1317664 | Msa0748180:intron | 35.0% |
| GGTTTATTGAAGAACACGTT+AGG | - | chr5_2:1317666-1317685 | Msa0748180:intron | 35.0% | |
| !! | AGCTCAGTTCTTTGAAATAG+TGG | - | chr5_2:1318180-1318199 | Msa0748180:intron | 35.0% |
| TTGTAGACCCTGTTATAGAA+AGG | - | chr5_2:1318322-1318341 | Msa0748180:intron | 35.0% | |
| TAAAGATGATACAGCTCTTG+TGG | - | chr5_2:1318813-1318832 | Msa0748180:intron | 35.0% | |
| CAATCCTCACAGATTTGTAA+TGG | + | chr5_2:1319304-1319323 | None:intergenic | 35.0% | |
| CTTCTATTATTGCTGTATGG+TGG | - | chr5_2:1319324-1319343 | Msa0748180:intron | 35.0% | |
| AGCGCCAATCATTTAATATC+TGG | - | chr5_2:1319458-1319477 | Msa0748180:intron | 35.0% | |
| ! | TTCAGTATTGTTACTTCCAG+AGG | + | chr5_2:1319765-1319784 | None:intergenic | 35.0% |
| TACCGACAACAGAATTATGT+AGG | + | chr5_2:1319960-1319979 | None:intergenic | 35.0% | |
| GTAATTTGAGGAGTCCTTAA+CGG | + | chr5_2:1320054-1320073 | None:intergenic | 35.0% | |
| GTGCAAACTTCTGTAATTTG+AGG | + | chr5_2:1320066-1320085 | None:intergenic | 35.0% | |
| GAAATGAAAGAGGTTCAGGT+AGG | + | chr5_2:1314083-1314102 | None:intergenic | 40.0% | |
| AGAATCGAGATCGGAGAATT+TGG | + | chr5_2:1314144-1314163 | None:intergenic | 40.0% | |
| CGTATTTGAGGAAATTCCAG+CGG | + | chr5_2:1314387-1314406 | None:intergenic | 40.0% | |
| CTAGCGTGAATTGTTGTGTT+TGG | - | chr5_2:1315087-1315106 | Msa0748180:intron | 40.0% | |
| ! | GCACTGACACTTCTAATTGA+AGG | + | chr5_2:1315257-1315276 | None:intergenic | 40.0% |
| CGAGTTGCAAAATTTGTGTG+TGG | - | chr5_2:1315357-1315376 | Msa0748180:CDS | 40.0% | |
| ! | TATTGGAGGTGTGGTATCTT+TGG | - | chr5_2:1315410-1315429 | Msa0748180:intron | 40.0% |
| !! | TATGTTGGTGATGTGGTTTG+TGG | + | chr5_2:1315825-1315844 | None:intergenic | 40.0% |
| CAAACCACATCACCAACATA+AGG | - | chr5_2:1315825-1315844 | Msa0748180:intron | 40.0% | |
| !! | GTCAGTTGTTCCCTGTTTTT+AGG | + | chr5_2:1315882-1315901 | None:intergenic | 40.0% |
| GGGAACAACTGACTAAAAAC+AGG | - | chr5_2:1315889-1315908 | Msa0748180:intron | 40.0% | |
| !!! | CTTAGTTTTGGAGCTTTGCA+TGG | - | chr5_2:1316061-1316080 | Msa0748180:intron | 40.0% |
| !!! | TTTTGGAGCTTTGCATGGTT+AGG | - | chr5_2:1316066-1316085 | Msa0748180:intron | 40.0% |
| CTTGCAGAAATTTCAAGGGA+TGG | - | chr5_2:1316175-1316194 | Msa0748180:CDS | 40.0% | |
| TGGCGTACAGAATAAAGCTA+GGG | + | chr5_2:1316230-1316249 | None:intergenic | 40.0% | |
| ! | GTCAAGGGTATGGAACTAAA+TGG | + | chr5_2:1316379-1316398 | None:intergenic | 40.0% |
| ! | CCTTATTTAGGTCAAGGGTA+TGG | + | chr5_2:1316389-1316408 | None:intergenic | 40.0% |
| CCATACCCTTGACCTAAATA+AGG | - | chr5_2:1316386-1316405 | Msa0748180:intron | 40.0% | |
| ! | GACTTCCCTTATTTAGGTCA+AGG | + | chr5_2:1316395-1316414 | None:intergenic | 40.0% |
| ! | CCTAAGGACTTCCCTTATTT+AGG | + | chr5_2:1316401-1316420 | None:intergenic | 40.0% |
| CCTAAATAAGGGAAGTCCTT+AGG | - | chr5_2:1316398-1316417 | Msa0748180:intron | 40.0% | |
| ! | TGTTTTCTCCAAGTTGCCTA+AGG | + | chr5_2:1316417-1316436 | None:intergenic | 40.0% |
| GTGGGAAAGTTAAAGTGAGA+GGG | - | chr5_2:1316473-1316492 | Msa0748180:CDS | 40.0% | |
| TGTTCCTGCTTTGCATGAAA+GGG | - | chr5_2:1316574-1316593 | Msa0748180:intron | 40.0% | |
| CGATTCATGTTTGTACTTGC+AGG | + | chr5_2:1316697-1316716 | None:intergenic | 40.0% | |
| GCAAGCAGCAATTTATCCAT+GGG | + | chr5_2:1316839-1316858 | None:intergenic | 40.0% | |
| TGCAAGCAGCAATTTATCCA+TGG | + | chr5_2:1316840-1316859 | None:intergenic | 40.0% | |
| !! | TGTGGATAGCGGAAATTTGT+GGG | + | chr5_2:1317048-1317067 | None:intergenic | 40.0% |
| !! | TTGTGGATAGCGGAAATTTG+TGG | + | chr5_2:1317049-1317068 | None:intergenic | 40.0% |
| GTGTTGTCAATTGTGGATAG+CGG | + | chr5_2:1317059-1317078 | None:intergenic | 40.0% | |
| CTATCCACAATTGACAACAC+TGG | - | chr5_2:1317059-1317078 | Msa0748180:intron | 40.0% | |
| TCCTCTGTAGCATTTGATCA+GGG | - | chr5_2:1317146-1317165 | Msa0748180:intron | 40.0% | |
| !!! | AATGCACCGGTTTGATTTTG+AGG | - | chr5_2:1317339-1317358 | Msa0748180:intron | 40.0% |
| TAAAGCTCTACTGCTTTAGC+AGG | + | chr5_2:1317632-1317651 | None:intergenic | 40.0% | |
| ! | TGTATGGTTCTGTATAACCC+TGG | + | chr5_2:1317797-1317816 | None:intergenic | 40.0% |
| !! | TGGCAGACTTTTAAAAGACC+CGG | - | chr5_2:1318133-1318152 | Msa0748180:intron | 40.0% |
| GATCCAGCCTTTCTATAACA+GGG | + | chr5_2:1318332-1318351 | None:intergenic | 40.0% | |
| CTGCTACTAAGTATCAGGAT+GGG | - | chr5_2:1318385-1318404 | Msa0748180:intron | 40.0% | |
| ! | TTTTTCCCTTTGCCTGTCAT+TGG | - | chr5_2:1318671-1318690 | Msa0748180:intron | 40.0% |
| !! | GTAGGCAACTTTCTAAAGCA+TGG | + | chr5_2:1318750-1318769 | None:intergenic | 40.0% |
| TTAATAGGGACACAGTTCTC+AGG | + | chr5_2:1318775-1318794 | None:intergenic | 40.0% | |
| ATGCACTTACACTCAAGGAA+TGG | + | chr5_2:1318847-1318866 | None:intergenic | 40.0% | |
| !! | CTGCATATGGATAATGGAGA+AGG | + | chr5_2:1318947-1318966 | None:intergenic | 40.0% |
| ATATTCCGAGTGAATTCCTC+AGG | - | chr5_2:1319027-1319046 | Msa0748180:intron | 40.0% | |
| ! | TATGCAATTTGAAACGCCTG+AGG | + | chr5_2:1319046-1319065 | None:intergenic | 40.0% |
| CAGGCGTTTCAAATTGCATA+AGG | - | chr5_2:1319046-1319065 | Msa0748180:intron | 40.0% | |
| TGGGAACTATATTGCAACCA+AGG | - | chr5_2:1319115-1319134 | Msa0748180:intron | 40.0% | |
| GTAATTAACCAGACAAGGGT+GGG | + | chr5_2:1319249-1319268 | None:intergenic | 40.0% | |
| TGTAATTAACCAGACAAGGG+TGG | + | chr5_2:1319250-1319269 | None:intergenic | 40.0% | |
| ! | ATTATTGCTGTATGGTGGTG+TGG | - | chr5_2:1319329-1319348 | Msa0748180:intron | 40.0% |
| ! | TTATTGCTGTATGGTGGTGT+GGG | - | chr5_2:1319330-1319349 | Msa0748180:intron | 40.0% |
| TGAATTAGGAGTGACATGGT+GGG | + | chr5_2:1319560-1319579 | None:intergenic | 40.0% | |
| AAGGTGAATTAGGAGTGACA+TGG | + | chr5_2:1319564-1319583 | None:intergenic | 40.0% | |
| ATGTTGGCGGAAATAAGACA+GGG | + | chr5_2:1319691-1319710 | None:intergenic | 40.0% | |
| AATGTTGGCGGAAATAAGAC+AGG | + | chr5_2:1319692-1319711 | None:intergenic | 40.0% | |
| ! | TTCCGCCAACATTTTTACTC+TGG | - | chr5_2:1319699-1319718 | Msa0748180:CDS | 40.0% |
| CACCAGAGTAAAAATGTTGG+CGG | + | chr5_2:1319704-1319723 | None:intergenic | 40.0% | |
| ! | TGGTGTTTTCCAAATGATGC+AGG | - | chr5_2:1319719-1319738 | Msa0748180:CDS | 40.0% |
| TCCAAATGATGCAGGAAAAC+CGG | - | chr5_2:1319727-1319746 | Msa0748180:CDS | 40.0% | |
| ! | TGGTTCAAGACTCTAGTTCA+GGG | + | chr5_2:1319926-1319945 | None:intergenic | 40.0% |
| ! | ATGGTTCAAGACTCTAGTTC+AGG | + | chr5_2:1319927-1319946 | None:intergenic | 40.0% |
| GGCCTACATAATTCTGTTGT+CGG | - | chr5_2:1319955-1319974 | Msa0748180:CDS | 40.0% | |
| ! | AAGAGGTTCAGGTAGGGTTT+TGG | + | chr5_2:1314076-1314095 | None:intergenic | 45.0% |
| TGAGGAAATTCCAGCGGTTA+GGG | + | chr5_2:1314381-1314400 | None:intergenic | 45.0% | |
| TTGAGGAAATTCCAGCGGTT+AGG | + | chr5_2:1314382-1314401 | None:intergenic | 45.0% | |
| TTCCTCAAATACGCTGCCAT+CGG | - | chr5_2:1314394-1314413 | Msa0748180:three_prime_UTR | 45.0% | |
| ATCAGGTGGAGTGTACTTAG+CGG | + | chr5_2:1314657-1314676 | None:intergenic | 45.0% | |
| ! | CACATATGTGGGTGTCATGT+CGG | - | chr5_2:1315196-1315215 | Msa0748180:intron | 45.0% |
| TATTGGACAGTGACACGTGT+TGG | - | chr5_2:1315219-1315238 | Msa0748180:intron | 45.0% | |
| !! | TAGAAGTGTCAGTGCTACAG+AGG | - | chr5_2:1315262-1315281 | Msa0748180:intron | 45.0% |
| AACCAAGCATAAGACGAGCA+AGG | - | chr5_2:1315766-1315785 | Msa0748180:intron | 45.0% | |
| !! | GTTCCCTTATGTTGGTGATG+TGG | + | chr5_2:1315832-1315851 | None:intergenic | 45.0% |
| AGTCGGTTGTTCCCTTATGT+TGG | + | chr5_2:1315840-1315859 | None:intergenic | 45.0% | |
| GCAATAGTGCTGTCCACAAA+AGG | + | chr5_2:1316042-1316061 | None:intergenic | 45.0% | |
| GTATACTCAACTGCAGTGAC+AGG | - | chr5_2:1316197-1316216 | Msa0748180:CDS | 45.0% | |
| GGCGTACAGAATAAAGCTAG+GGG | + | chr5_2:1316229-1316248 | None:intergenic | 45.0% | |
| GTGGCGTACAGAATAAAGCT+AGG | + | chr5_2:1316231-1316250 | None:intergenic | 45.0% | |
| ACTTGGAGAAAACATGTGCC+TGG | - | chr5_2:1316423-1316442 | Msa0748180:intron | 45.0% | |
| CTTTCCCACCTCTATCCATT+CGG | + | chr5_2:1316462-1316481 | None:intergenic | 45.0% | |
| GGTGGGAAAGTTAAAGTGAG+AGG | - | chr5_2:1316472-1316491 | Msa0748180:CDS | 45.0% | |
| TCCTCTCAGGATAACTGCTT+GGG | + | chr5_2:1316499-1316518 | None:intergenic | 45.0% | |
| TATCCTGAGAGGAGTTGAGA+AGG | - | chr5_2:1316506-1316525 | Msa0748180:CDS | 45.0% | |
| ATCCTGAGAGGAGTTGAGAA+GGG | - | chr5_2:1316507-1316526 | Msa0748180:CDS | 45.0% | |
| AGGAGTTGAGAAGGGAGTTA+GGG | - | chr5_2:1316515-1316534 | Msa0748180:CDS | 45.0% | |
| CTGTTCCTGCTTTGCATGAA+AGG | - | chr5_2:1316573-1316592 | Msa0748180:intron | 45.0% | |
| GTTCCTGCTTTGCATGAAAG+GGG | - | chr5_2:1316575-1316594 | Msa0748180:intron | 45.0% | |
| !! | CTTTGCATGAAAGGGGTACT+TGG | - | chr5_2:1316582-1316601 | Msa0748180:intron | 45.0% |
| ! | AGTCAAGGGCGGTATGTTTT+GGG | + | chr5_2:1316638-1316657 | None:intergenic | 45.0% |
| AATATGTAGTAGGGGTCCCA+TGG | - | chr5_2:1316820-1316839 | Msa0748180:intron | 45.0% | |
| CTGATCAAATGCTACAGAGG+AGG | + | chr5_2:1317147-1317166 | None:intergenic | 45.0% | |
| CTCCTCTGTAGCATTTGATC+AGG | - | chr5_2:1317145-1317164 | Msa0748180:intron | 45.0% | |
| CAAAGAAGTCAAGTGGGCAT+TGG | - | chr5_2:1317181-1317200 | Msa0748180:intron | 45.0% | |
| GTTGTATTGTTAAGGAGGGC+TGG | - | chr5_2:1317208-1317227 | Msa0748180:intron | 45.0% | |
| TATAACCCTGGAAGGAAGCA+TGG | + | chr5_2:1317785-1317804 | None:intergenic | 45.0% | |
| ! | TGGTTCTGTATAACCCTGGA+AGG | + | chr5_2:1317793-1317812 | None:intergenic | 45.0% |
| ! | AACCTCACATGCACCGTTTT+GGG | - | chr5_2:1317922-1317941 | Msa0748180:intron | 45.0% |
| ATGTGAAGCGAGATACAAGC+TGG | - | chr5_2:1318113-1318132 | Msa0748180:intron | 45.0% | |
| !! | TTCCAAGAAGGCATCAACTC+CGG | + | chr5_2:1318155-1318174 | None:intergenic | 45.0% |
| CTGAGCTAGATGTTCCAAGA+AGG | + | chr5_2:1318167-1318186 | None:intergenic | 45.0% | |
| AGACCCTGTTATAGAAAGGC+TGG | - | chr5_2:1318326-1318345 | Msa0748180:intron | 45.0% | |
| GGATCCAGCCTTTCTATAAC+AGG | + | chr5_2:1318333-1318352 | None:intergenic | 45.0% | |
| ! | TGGATCCTAAGCACTGCATT+AGG | - | chr5_2:1318346-1318365 | Msa0748180:intron | 45.0% |
| CTGTACCTAATGCAGTGCTT+AGG | + | chr5_2:1318354-1318373 | None:intergenic | 45.0% | |
| ! | CTAAGCACTGCATTAGGTAC+AGG | - | chr5_2:1318352-1318371 | Msa0748180:intron | 45.0% |
| GAGACCTGCTACTAAGTATC+AGG | - | chr5_2:1318380-1318399 | Msa0748180:intron | 45.0% | |
| CCATCCTGATACTTAGTAGC+AGG | + | chr5_2:1318387-1318406 | None:intergenic | 45.0% | |
| CCTGCTACTAAGTATCAGGA+TGG | - | chr5_2:1318384-1318403 | Msa0748180:intron | 45.0% | |
| TGAAAGATCCTGCCAATGAC+AGG | + | chr5_2:1318686-1318705 | None:intergenic | 45.0% | |
| ACTGTGTCCCTATTAAGCCA+TGG | - | chr5_2:1318779-1318798 | Msa0748180:intron | 45.0% | |
| CTGTGTCCCTATTAAGCCAT+GGG | - | chr5_2:1318780-1318799 | Msa0748180:intron | 45.0% | |
| TCTGCACCCATGGCTTAATA+GGG | + | chr5_2:1318789-1318808 | None:intergenic | 45.0% | |
| TCTTTATCAGTCTGCACCCA+TGG | + | chr5_2:1318799-1318818 | None:intergenic | 45.0% | |
| GAGGAATGCACTTACACTCA+AGG | + | chr5_2:1318852-1318871 | None:intergenic | 45.0% | |
| GTACGGGCAATAACTGCATA+TGG | + | chr5_2:1318960-1318979 | None:intergenic | 45.0% | |
| !! | TTATATCAGCCGGGCTAGTA+CGG | + | chr5_2:1318977-1318996 | None:intergenic | 45.0% |
| !! | AGCACTGGTCTTATATCAGC+CGG | + | chr5_2:1318987-1319006 | None:intergenic | 45.0% |
| CACTCGGAATATCACATCCT+TGG | + | chr5_2:1319019-1319038 | None:intergenic | 45.0% | |
| AAACGCCTGAGGAATTCACT+CGG | + | chr5_2:1319035-1319054 | None:intergenic | 45.0% | |
| GTGAATTAGGAGTGACATGG+TGG | + | chr5_2:1319561-1319580 | None:intergenic | 45.0% | |
| ! | TCCGGTTTTCCTGCATCATT+TGG | + | chr5_2:1319731-1319750 | None:intergenic | 45.0% |
| AAATGATGCAGGAAAACCGG+AGG | - | chr5_2:1319730-1319749 | Msa0748180:CDS | 45.0% | |
| TTGAAGCCACTGCAAAATCG+AGG | - | chr5_2:1319858-1319877 | Msa0748180:intron | 45.0% | |
| ! | ATCACTCCTCGATTTTGCAG+TGG | + | chr5_2:1319867-1319886 | None:intergenic | 45.0% |
| !!! | TAAATATATAATTAATTTTG+AGG | - | chr5_2:1316281-1316300 | Msa0748180:intron | 5.0% |
| !!! | GTTCAGGTAGGGTTTTGGCT+TGG | + | chr5_2:1314071-1314090 | None:intergenic | 50.0% |
| CGACGGAGAAGAATCGAGAT+CGG | + | chr5_2:1314153-1314172 | None:intergenic | 50.0% | |
| AGGAGGTTGAGGAGTGACTT+TGG | + | chr5_2:1314209-1314228 | None:intergenic | 50.0% | |
| GAGAAACATGGAGGAGGTTG+AGG | + | chr5_2:1314220-1314239 | None:intergenic | 50.0% | |
| GTGGATGAGAAACATGGAGG+AGG | + | chr5_2:1314226-1314245 | None:intergenic | 50.0% | |
| TGAATGAGTAGCAGCAGGAG+CGG | + | chr5_2:1314251-1314270 | None:intergenic | 50.0% | |
| GAAGAAAAAGGAGGAGGTGG+AGG | + | chr5_2:1314349-1314368 | None:intergenic | 50.0% | |
| GTGGAAGAAAAAGGAGGAGG+TGG | + | chr5_2:1314352-1314371 | None:intergenic | 50.0% | |
| GAAGCGGTGGAAGAAAAAGG+AGG | + | chr5_2:1314358-1314377 | None:intergenic | 50.0% | |
| GAGGAAATTCCAGCGGTTAG+GGG | + | chr5_2:1314380-1314399 | None:intergenic | 50.0% | |
| GCTAAGTACACTCCACCTGA+TGG | - | chr5_2:1314656-1314675 | Msa0748180:intron | 50.0% | |
| AGAGAAGTAGCTCCATCAGG+TGG | + | chr5_2:1314671-1314690 | None:intergenic | 50.0% | |
| TCGAGAGAAGTAGCTCCATC+AGG | + | chr5_2:1314674-1314693 | None:intergenic | 50.0% | |
| ! | TGTGGGTGTCATGTCGGTAT+TGG | - | chr5_2:1315202-1315221 | Msa0748180:intron | 50.0% |
| CAGTGACACGTGTTGGACAT+CGG | - | chr5_2:1315226-1315245 | Msa0748180:intron | 50.0% | |
| GTGGCTCTTCGAATACGAAC+TGG | - | chr5_2:1315328-1315347 | Msa0748180:CDS | 50.0% | |
| TACTCAACTGCAGTGACAGG+TGG | - | chr5_2:1316200-1316219 | Msa0748180:CDS | 50.0% | |
| ACTCAACTGCAGTGACAGGT+GGG | - | chr5_2:1316201-1316220 | Msa0748180:CDS | 50.0% | |
| GTGTCTCTTCCCTTGGACTT+CGG | - | chr5_2:1316316-1316335 | Msa0748180:intron | 50.0% | |
| TGTCTCTTCCCTTGGACTTC+GGG | - | chr5_2:1316317-1316336 | Msa0748180:intron | 50.0% | |
| GCAACATTCCCGAAGTCCAA+GGG | + | chr5_2:1316328-1316347 | None:intergenic | 50.0% | |
| AGGGAAGTCCTTAGGCAACT+TGG | - | chr5_2:1316406-1316425 | Msa0748180:intron | 50.0% | |
| AAAACATGTGCCTGGCGTGT+GGG | - | chr5_2:1316431-1316450 | Msa0748180:intron | 50.0% | |
| GAGTCCGAATGGATAGAGGT+GGG | - | chr5_2:1316455-1316474 | Msa0748180:CDS | 50.0% | |
| CTCCTCTCAGGATAACTGCT+TGG | + | chr5_2:1316500-1316519 | None:intergenic | 50.0% | |
| GAGGAGTTGAGAAGGGAGTT+AGG | - | chr5_2:1316514-1316533 | Msa0748180:CDS | 50.0% | |
| AGGGAAAAGAACCTCCCACT+AGG | - | chr5_2:1316534-1316553 | Msa0748180:CDS | 50.0% | |
| GAAAAGAACCTCCCACTAGG+TGG | - | chr5_2:1316537-1316556 | Msa0748180:CDS | 50.0% | |
| CCTTCCTCAAACCACCTAGT+GGG | + | chr5_2:1316551-1316570 | None:intergenic | 50.0% | |
| CCACTAGGTGGTTTGAGGAA+GGG | - | chr5_2:1316549-1316568 | Msa0748180:intron | 50.0% | |
| CACTAGGTGGTTTGAGGAAG+GGG | - | chr5_2:1316550-1316569 | Msa0748180:intron | 50.0% | |
| GTACCCCTTTCATGCAAAGC+AGG | + | chr5_2:1316581-1316600 | None:intergenic | 50.0% | |
| ! | CAGTCAAGGGCGGTATGTTT+TGG | + | chr5_2:1316639-1316658 | None:intergenic | 50.0% |
| CAAAACATACCGCCCTTGAC+TGG | - | chr5_2:1316637-1316656 | Msa0748180:intron | 50.0% | |
| ! | AGTGTTGTTCCAGTCAAGGG+CGG | + | chr5_2:1316649-1316668 | None:intergenic | 50.0% |
| ! | GGCAGTGTTGTTCCAGTCAA+GGG | + | chr5_2:1316652-1316671 | None:intergenic | 50.0% |
| ! | TGGCAGTGTTGTTCCAGTCA+AGG | + | chr5_2:1316653-1316672 | None:intergenic | 50.0% |
| TGACTGGAACAACACTGCCA+AGG | - | chr5_2:1316653-1316672 | Msa0748180:intron | 50.0% | |
| GACTGGAACAACACTGCCAA+GGG | - | chr5_2:1316654-1316673 | Msa0748180:intron | 50.0% | |
| AACACTGCCAAGGGTAGGAA+TGG | - | chr5_2:1316663-1316682 | Msa0748180:intron | 50.0% | |
| AGTACGACCATTCCTACCCT+TGG | + | chr5_2:1316673-1316692 | None:intergenic | 50.0% | |
| GCTGCTTGCATATGCGCATT+AGG | - | chr5_2:1316850-1316869 | Msa0748180:intron | 50.0% | |
| GTTATGCTGCGATGTCGTAG+CGG | - | chr5_2:1316943-1316962 | Msa0748180:intron | 50.0% | |
| GCCCTGATCAAATGCTACAG+AGG | + | chr5_2:1317150-1317169 | None:intergenic | 50.0% | |
| TTTGGCCATGCTTCCTTCCA+GGG | - | chr5_2:1317777-1317796 | Msa0748180:intron | 50.0% | |
| GGAAGGAGCTTGTCTGTGTA+TGG | + | chr5_2:1317813-1317832 | None:intergenic | 50.0% | |
| CCTGAGGAAGCAAATCTGGA+AGG | + | chr5_2:1317830-1317849 | None:intergenic | 50.0% | |
| ! | CCTTCCAGATTTGCTTCCTC+AGG | - | chr5_2:1317827-1317846 | Msa0748180:intron | 50.0% |
| TGCTCCTGAGGAAGCAAATC+TGG | + | chr5_2:1317834-1317853 | None:intergenic | 50.0% | |
| GTGAACACATGTTGCTCCTG+AGG | + | chr5_2:1317846-1317865 | None:intergenic | 50.0% | |
| ! | CAACCTCACATGCACCGTTT+TGG | - | chr5_2:1317921-1317940 | Msa0748180:intron | 50.0% |
| ! | ACCTCACATGCACCGTTTTG+GGG | - | chr5_2:1317923-1317942 | Msa0748180:intron | 50.0% |
| !! | TCCAAGAAGGCATCAACTCC+GGG | + | chr5_2:1318154-1318173 | None:intergenic | 50.0% |
| TCCTGCCAATGACAGGCAAA+GGG | + | chr5_2:1318679-1318698 | None:intergenic | 50.0% | |
| ATCCTGCCAATGACAGGCAA+AGG | + | chr5_2:1318680-1318699 | None:intergenic | 50.0% | |
| ! | GGACACAGTTCTCAGGTTGT+AGG | + | chr5_2:1318768-1318787 | None:intergenic | 50.0% |
| GTCTGCACCCATGGCTTAAT+AGG | + | chr5_2:1318790-1318809 | None:intergenic | 50.0% | |
| AGTTATTGCCCGTACTAGCC+CGG | - | chr5_2:1318965-1318984 | Msa0748180:intron | 50.0% | |
| !! | TATATCAGCCGGGCTAGTAC+GGG | + | chr5_2:1318976-1318995 | None:intergenic | 50.0% |
| !! | GCACTGGTCTTATATCAGCC+GGG | + | chr5_2:1318986-1319005 | None:intergenic | 50.0% |
| ! | TGTATGGTGGTGTGGGACAA+GGG | - | chr5_2:1319337-1319356 | Msa0748180:intron | 50.0% |
| !!! | AGGGTTTTGGCTTGGCTTGG+TGG | + | chr5_2:1314063-1314082 | None:intergenic | 55.0% |
| !!! | GGTAGGGTTTTGGCTTGGCT+TGG | + | chr5_2:1314066-1314085 | None:intergenic | 55.0% |
| CGATGACGATGATGCTGCGA+CGG | + | chr5_2:1314170-1314189 | None:intergenic | 55.0% | |
| GTGACTTTGGCGAAGCGGAA+TGG | + | chr5_2:1314196-1314215 | None:intergenic | 55.0% | |
| GAGGAGTGACTTTGGCGAAG+CGG | + | chr5_2:1314201-1314220 | None:intergenic | 55.0% | |
| GCGGTGGATGAGAAACATGG+AGG | + | chr5_2:1314229-1314248 | None:intergenic | 55.0% | |
| GGAGGTGAATGAGTAGCAGC+AGG | + | chr5_2:1314256-1314275 | None:intergenic | 55.0% | |
| GGAAGAAGGTGGAGGAGTAG+CGG | + | chr5_2:1314317-1314336 | None:intergenic | 55.0% | |
| GAAAAAGGAGGAGGTGGAGG+AGG | + | chr5_2:1314346-1314365 | None:intergenic | 55.0% | |
| GCGGTGGAAGAAAAAGGAGG+AGG | + | chr5_2:1314355-1314374 | None:intergenic | 55.0% | |
| GGGGAAGCGGTGGAAGAAAA+AGG | + | chr5_2:1314361-1314380 | None:intergenic | 55.0% | |
| ATTCCAGCGGTTAGGGGAAG+CGG | + | chr5_2:1314374-1314393 | None:intergenic | 55.0% | |
| CACCGATGGCAGCGTATTTG+AGG | + | chr5_2:1314399-1314418 | None:intergenic | 55.0% | |
| ! | GTAAGAGGCGTAACCGGCTA+CGG | + | chr5_2:1314440-1314459 | None:intergenic | 55.0% |
| GTAGCCGGTTACGCCTCTTA+CGG | - | chr5_2:1314439-1314458 | Msa0748180:three_prime_UTR | 55.0% | |
| ! | CGAACCGTAAGAGGCGTAAC+CGG | + | chr5_2:1314446-1314465 | None:intergenic | 55.0% |
| CGCCTTGCTCGTCTTATGCT+TGG | + | chr5_2:1315771-1315790 | None:intergenic | 55.0% | |
| CATGCGAGTGTCTCTTCCCT+TGG | - | chr5_2:1316309-1316328 | Msa0748180:intron | 55.0% | |
| CGCAACATTCCCGAAGTCCA+AGG | + | chr5_2:1316329-1316348 | None:intergenic | 55.0% | |
| GAAAACATGTGCCTGGCGTG+TGG | - | chr5_2:1316430-1316449 | Msa0748180:intron | 55.0% | |
| CGAGTCCGAATGGATAGAGG+TGG | - | chr5_2:1316454-1316473 | Msa0748180:CDS | 55.0% | |
| GCCCAAGCAGTTATCCTGAG+AGG | - | chr5_2:1316495-1316514 | Msa0748180:CDS | 55.0% | |
| CTCCCTTCTCAACTCCTCTC+AGG | + | chr5_2:1316512-1316531 | None:intergenic | 55.0% | |
| ACCTCCCACTAGGTGGTTTG+AGG | - | chr5_2:1316544-1316563 | Msa0748180:CDS | 55.0% | |
| TCCTCAAACCACCTAGTGGG+AGG | + | chr5_2:1316548-1316567 | None:intergenic | 55.0% | |
| CCCACTAGGTGGTTTGAGGA+AGG | - | chr5_2:1316548-1316567 | Msa0748180:intron | 55.0% | |
| CCCTTCCTCAAACCACCTAG+TGG | + | chr5_2:1316552-1316571 | None:intergenic | 55.0% | |
| GGTACTTGGTCCCCGAAAGA+AGG | - | chr5_2:1316596-1316615 | Msa0748180:intron | 55.0% | |
| GGAACAACACTGCCAAGGGT+AGG | - | chr5_2:1316658-1316677 | Msa0748180:intron | 55.0% | |
| CTTTGGCCATGCTTCCTTCC+AGG | - | chr5_2:1317776-1317795 | Msa0748180:intron | 55.0% | |
| TCCCCAAAACGGTGCATGTG+AGG | + | chr5_2:1317927-1317946 | None:intergenic | 55.0% | |
| !! | ACCCGGAGTTGATGCCTTCT+TGG | - | chr5_2:1318150-1318169 | Msa0748180:CDS | 55.0% |
| TCCCTTTGCCTGTCATTGGC+AGG | - | chr5_2:1318675-1318694 | Msa0748180:intron | 55.0% | |
| CCTTGGTAAGACTGCAGCAC+TGG | + | chr5_2:1319002-1319021 | None:intergenic | 55.0% | |
| CCAGTGCTGCAGTCTTACCA+AGG | - | chr5_2:1318999-1319018 | Msa0748180:intron | 55.0% | |
| AAACTACGCCCACCCTTGTC+TGG | - | chr5_2:1319238-1319257 | Msa0748180:intron | 55.0% | |
| ! | CTGTATGGTGGTGTGGGACA+AGG | - | chr5_2:1319336-1319355 | Msa0748180:intron | 55.0% |
| GCGGCGGTGGATGAGAAACA+TGG | + | chr5_2:1314232-1314251 | None:intergenic | 60.0% | |
| ATGAGTAGCAGCAGGAGCGG+CGG | + | chr5_2:1314248-1314267 | None:intergenic | 60.0% | |
| GAAGGAGTGGCAGAAGGAGG+AGG | + | chr5_2:1314277-1314296 | None:intergenic | 60.0% | |
| GGAGAAGGAGTGGCAGAAGG+AGG | + | chr5_2:1314280-1314299 | None:intergenic | 60.0% | |
| GGTGGAGAAGGAGTGGCAGA+AGG | + | chr5_2:1314283-1314302 | None:intergenic | 60.0% | |
| GAAGAGGGAGGAGGTGGAGA+AGG | + | chr5_2:1314295-1314314 | None:intergenic | 60.0% | |
| ! | GGTGGAGGAGTAGCGGAAGA+GGG | + | chr5_2:1314310-1314329 | None:intergenic | 60.0% |
| ! | AGGTGGAGGAGTAGCGGAAG+AGG | + | chr5_2:1314311-1314330 | None:intergenic | 60.0% |
| ! | GCTGCCATCGGTGCCTTAAC+CGG | - | chr5_2:1314406-1314425 | Msa0748180:three_prime_UTR | 60.0% |
| !! | GGTTCCGGTTAAGGCACCGA+TGG | + | chr5_2:1314413-1314432 | None:intergenic | 60.0% |
| TACGGCGGTGGTTCCGGTTA+AGG | + | chr5_2:1314422-1314441 | None:intergenic | 60.0% | |
| GGGCGAGTCCGAATGGATAG+AGG | - | chr5_2:1316451-1316470 | Msa0748180:CDS | 60.0% | |
| GTGTGGGACAAGGGACAGTC+TGG | - | chr5_2:1319346-1319365 | Msa0748180:intron | 60.0% | |
| !! | GCTTGGCTTGGTGGAGACGC+CGG | + | chr5_2:1314054-1314073 | None:intergenic | 65.0% |
| GGAGTGGCAGAAGGAGGAGG+AGG | + | chr5_2:1314274-1314293 | None:intergenic | 65.0% | |
| GGGAGGAGGTGGAGAAGGAG+TGG | + | chr5_2:1314290-1314309 | None:intergenic | 65.0% | |
| ! | GTAGCGGAAGAGGGAGGAGG+TGG | + | chr5_2:1314301-1314320 | None:intergenic | 65.0% |
| ! | GGAGTAGCGGAAGAGGGAGG+AGG | + | chr5_2:1314304-1314323 | None:intergenic | 65.0% |
| ! | GGAGGAGTAGCGGAAGAGGG+AGG | + | chr5_2:1314307-1314326 | None:intergenic | 65.0% |
| ! | GGAGTGGCGGAAGAAGGTGG+AGG | + | chr5_2:1314325-1314344 | None:intergenic | 65.0% |
| ! | GGAGGAGTGGCGGAAGAAGG+TGG | + | chr5_2:1314328-1314347 | None:intergenic | 65.0% |
| ! | GGAGGAGGAGTGGCGGAAGA+AGG | + | chr5_2:1314331-1314350 | None:intergenic | 65.0% |
| AGGAGGTGGAGGAGGAGTGG+CGG | + | chr5_2:1314338-1314357 | None:intergenic | 65.0% | |
| AGGAGGAGGTGGAGGAGGAG+TGG | + | chr5_2:1314341-1314360 | None:intergenic | 65.0% | |
| ! | AGAGGCGTAACCGGCTACGG+CGG | + | chr5_2:1314437-1314456 | None:intergenic | 65.0% |
| !! | CCAGAGGCGTCTCTGTCCTC+CGG | + | chr5_2:1319749-1319768 | None:intergenic | 65.0% |
| AGTAGCAGCAGGAGCGGCGG+TGG | + | chr5_2:1314245-1314264 | None:intergenic | 70.0% | |
| CCAGCGGTTAGGGGAAGCGG+TGG | + | chr5_2:1314371-1314390 | None:intergenic | 70.0% | |
| CCACCGCTTCCCCTAACCGC+TGG | - | chr5_2:1314368-1314387 | Msa0748180:three_prime_UTR | 70.0% | |
| ACCGGAACCACCGCCGTAGC+CGG | - | chr5_2:1314424-1314443 | Msa0748180:three_prime_UTR | 70.0% | |
| ACCGGCTACGGCGGTGGTTC+CGG | + | chr5_2:1314428-1314447 | None:intergenic | 70.0% | |
| TTCGGACTCGCCCACACGCC+AGG | + | chr5_2:1316444-1316463 | None:intergenic | 70.0% | |
| GGCGTGTGGGCGAGTCCGAA+TGG | - | chr5_2:1316444-1316463 | Msa0748180:intron | 70.0% | |
| CCGGAGGACAGAGACGCCTC+TGG | - | chr5_2:1319746-1319765 | Msa0748180:intron | 70.0% | |
| GGCGTAACCGGCTACGGCGG+TGG | + | chr5_2:1314434-1314453 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 1314046 | 1320315 | 1314046 | ID=Msa0748180;Name=Msa0748180 |
| chr5_2 | mRNA | 1314046 | 1320315 | 1314046 | ID=Msa0748180-mRNA-1;Parent=Msa0748180;Name=Msa0748180-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.8|0.81|0.90|0.8|0.81|11|480|430 |
| chr5_2 | exon | 1314046 | 1314620 | 1314046 | ID=Msa0748180-mRNA-1:exon:368;Parent=Msa0748180-mRNA-1 |
| chr5_2 | exon | 1314745 | 1314758 | 1314745 | ID=Msa0748180-mRNA-1:exon:367;Parent=Msa0748180-mRNA-1 |
| chr5_2 | exon | 1315292 | 1315394 | 1315292 | ID=Msa0748180-mRNA-1:exon:366;Parent=Msa0748180-mRNA-1 |
| chr5_2 | exon | 1315505 | 1315664 | 1315505 | ID=Msa0748180-mRNA-1:exon:365;Parent=Msa0748180-mRNA-1 |
| chr5_2 | exon | 1315942 | 1316040 | 1315942 | ID=Msa0748180-mRNA-1:exon:364;Parent=Msa0748180-mRNA-1 |
| chr5_2 | exon | 1316136 | 1316240 | 1316136 | ID=Msa0748180-mRNA-1:exon:363;Parent=Msa0748180-mRNA-1 |
| chr5_2 | exon | 1316450 | 1316563 | 1316450 | ID=Msa0748180-mRNA-1:exon:362;Parent=Msa0748180-mRNA-1 |
| chr5_2 | exon | 1316673 | 1316734 | 1316673 | ID=Msa0748180-mRNA-1:exon:361;Parent=Msa0748180-mRNA-1 |
| chr5_2 | exon | 1318143 | 1318179 | 1318143 | ID=Msa0748180-mRNA-1:exon:360;Parent=Msa0748180-mRNA-1 |
| chr5_2 | exon | 1319667 | 1319755 | 1319667 | ID=Msa0748180-mRNA-1:exon:359;Parent=Msa0748180-mRNA-1 |
| chr5_2 | exon | 1319901 | 1320315 | 1319901 | ID=Msa0748180-mRNA-1:exon:358;Parent=Msa0748180-mRNA-1 |
| chr5_2 | CDS | 1319901 | 1320315 | 1319901 | ID=Msa0748180-mRNA-1:cds;Parent=Msa0748180-mRNA-1 |
| chr5_2 | CDS | 1319667 | 1319755 | 1319667 | ID=Msa0748180-mRNA-1:cds;Parent=Msa0748180-mRNA-1 |
| chr5_2 | CDS | 1318143 | 1318179 | 1318143 | ID=Msa0748180-mRNA-1:cds;Parent=Msa0748180-mRNA-1 |
| chr5_2 | CDS | 1316673 | 1316734 | 1316673 | ID=Msa0748180-mRNA-1:cds;Parent=Msa0748180-mRNA-1 |
| chr5_2 | CDS | 1316450 | 1316563 | 1316450 | ID=Msa0748180-mRNA-1:cds;Parent=Msa0748180-mRNA-1 |
| chr5_2 | CDS | 1316136 | 1316240 | 1316136 | ID=Msa0748180-mRNA-1:cds;Parent=Msa0748180-mRNA-1 |
| chr5_2 | CDS | 1315942 | 1316040 | 1315942 | ID=Msa0748180-mRNA-1:cds;Parent=Msa0748180-mRNA-1 |
| chr5_2 | CDS | 1315505 | 1315664 | 1315505 | ID=Msa0748180-mRNA-1:cds;Parent=Msa0748180-mRNA-1 |
| chr5_2 | CDS | 1315292 | 1315394 | 1315292 | ID=Msa0748180-mRNA-1:cds;Parent=Msa0748180-mRNA-1 |
| chr5_2 | CDS | 1314745 | 1314758 | 1314745 | ID=Msa0748180-mRNA-1:cds;Parent=Msa0748180-mRNA-1 |
| chr5_2 | CDS | 1314526 | 1314620 | 1314526 | ID=Msa0748180-mRNA-1:cds;Parent=Msa0748180-mRNA-1 |
| chr5_2 | three_prime_UTR | 1314046 | 1314525 | 1314046 | ID=Msa0748180-mRNA-1:three_prime_utr;Parent=Msa0748180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
