Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743920 | XP_003617793.1 | 90.164 | 366 | 34 | 1 | 30 | 395 | 1 | 364 | 0.0 | 606 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743920 | sp|Q8VYE2|TIM50_ARATH | 60.289 | 277 | 106 | 2 | 116 | 389 | 81 | 356 | 1.81e-119 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743920 | G7K4N6 | 90.164 | 366 | 34 | 1 | 30 | 395 | 1 | 364 | 0.0 | 606 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0743920 | Msa0748180 | 0.994941 | 1.459108e-211 | -8.615850e-47 |
| Msa0743920 | Msa0864230 | 0.995351 | 2.059333e-215 | -8.615850e-47 |
| Msa0743920 | Msa1071040 | 0.805904 | 1.065731e-49 | -8.615850e-47 |
| Msa0743920 | Msa1115190 | 0.801806 | 7.569203e-49 | -8.615850e-47 |
| Msa0743920 | Msa1159030 | 0.806216 | 9.160661e-50 | -8.615850e-47 |
| Msa0743920 | Msa1163980 | 0.820590 | 6.328354e-53 | -8.615850e-47 |
| Msa0743920 | Msa1428870 | 0.937408 | 3.640328e-98 | -8.615850e-47 |
| Msa0139110 | Msa0743920 | 0.998437 | 4.772780e-265 | -8.615850e-47 |
| Msa0149980 | Msa0743920 | 0.807991 | 3.857017e-50 | -8.615850e-47 |
| Msa0252470 | Msa0743920 | 0.803438 | 3.485870e-49 | -8.615850e-47 |
| Msa0291960 | Msa0743920 | 0.816128 | 6.486746e-52 | -8.615850e-47 |
| Msa0333220 | Msa0743920 | 0.809626 | 1.724604e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743920 | MtrunA17_Chr5g0446321 | 90.164 | 366 | 34 | 1 | 30 | 395 | 1 | 364 | 0.0 | 606 |
| Msa0743920 | MtrunA17_Chr3g0078241 | 34.973 | 183 | 95 | 6 | 212 | 374 | 282 | 460 | 4.91e-20 | 92.0 |
| Msa0743920 | MtrunA17_Chr2g0303951 | 32.973 | 185 | 104 | 6 | 211 | 379 | 286 | 466 | 3.32e-19 | 89.7 |
| Msa0743920 | MtrunA17_Chr5g0419741 | 30.526 | 190 | 100 | 5 | 224 | 396 | 126 | 300 | 2.58e-17 | 82.4 |
| Msa0743920 | MtrunA17_Chr3g0122541 | 31.293 | 147 | 82 | 4 | 215 | 342 | 268 | 414 | 1.55e-14 | 75.5 |
| Msa0743920 | MtrunA17_Chr2g0284551 | 30.573 | 157 | 90 | 2 | 203 | 343 | 91 | 244 | 3.21e-14 | 72.8 |
| Msa0743920 | MtrunA17_Chr3g0113611 | 28.671 | 143 | 96 | 4 | 246 | 386 | 129 | 267 | 1.41e-12 | 67.8 |
| Msa0743920 | MtrunA17_Chr5g0437111 | 28.244 | 131 | 90 | 3 | 246 | 374 | 155 | 283 | 9.23e-12 | 65.9 |
| Msa0743920 | MtrunA17_Chr3g0122521 | 32.632 | 95 | 63 | 1 | 249 | 342 | 59 | 153 | 3.96e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743920 | AT1G55900.2 | 60.215 | 279 | 107 | 2 | 116 | 391 | 81 | 358 | 1.02e-120 | 356 |
| Msa0743920 | AT1G55900.1 | 60.289 | 277 | 106 | 2 | 116 | 389 | 81 | 356 | 1.84e-120 | 355 |
| Msa0743920 | AT5G11860.3 | 29.834 | 181 | 105 | 5 | 213 | 374 | 99 | 276 | 2.08e-17 | 82.8 |
| Msa0743920 | AT5G11860.5 | 29.834 | 181 | 105 | 5 | 213 | 374 | 99 | 276 | 2.08e-17 | 82.8 |
| Msa0743920 | AT5G11860.1 | 29.834 | 181 | 105 | 5 | 213 | 374 | 99 | 276 | 2.08e-17 | 82.8 |
| Msa0743920 | AT5G11860.4 | 29.834 | 181 | 105 | 5 | 213 | 374 | 99 | 276 | 2.08e-17 | 82.8 |
| Msa0743920 | AT5G11860.2 | 29.834 | 181 | 105 | 5 | 213 | 374 | 99 | 276 | 2.08e-17 | 82.8 |
| Msa0743920 | AT5G45700.1 | 31.638 | 177 | 98 | 5 | 224 | 381 | 99 | 271 | 4.92e-15 | 75.5 |
| Msa0743920 | AT1G29780.1 | 31.169 | 154 | 88 | 4 | 224 | 360 | 51 | 203 | 1.44e-14 | 73.2 |
| Msa0743920 | AT5G46410.2 | 31.737 | 167 | 95 | 5 | 224 | 374 | 285 | 448 | 1.50e-14 | 75.9 |
| Msa0743920 | AT5G46410.3 | 31.737 | 167 | 95 | 5 | 224 | 374 | 282 | 445 | 1.58e-14 | 75.5 |
| Msa0743920 | AT5G46410.1 | 31.737 | 167 | 95 | 5 | 224 | 374 | 282 | 445 | 1.58e-14 | 75.5 |
| Msa0743920 | AT3G55960.1 | 30.075 | 133 | 85 | 4 | 246 | 374 | 155 | 283 | 1.23e-13 | 71.6 |
| Msa0743920 | AT1G29770.1 | 29.032 | 155 | 91 | 4 | 224 | 360 | 104 | 257 | 4.91e-12 | 66.6 |
Find 146 sgRNAs with CRISPR-Local
Find 427 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATATTTGATTTCTAAAA+TGG | 0.149532 | 5_1:-64495022 | Msa0743920:three_prime_UTR |
| GCAATAAAATCCTAAAATTT+AGG | 0.175512 | 5_1:+64494962 | None:intergenic |
| GTCTGCACCCATGGCTTAAT+AGG | 0.239907 | 5_1:+64496435 | None:intergenic |
| AGAATCGAGATCGGAGAATT+TGG | 0.254120 | 5_1:+64501087 | None:intergenic |
| AAACATTGATTCACTACATT+TGG | 0.275640 | 5_1:-64497336 | Msa0743920:CDS |
| GGATCCAGCCTTTCTATAAC+AGG | 0.280220 | 5_1:+64496892 | None:intergenic |
| ACCCGGAGTTGATGCCTTCT+TGG | 0.287511 | 5_1:-64497072 | Msa0743920:CDS |
| TAAAGCAGTAGAGCTTTATT+TGG | 0.300211 | 5_1:-64497588 | Msa0743920:CDS |
| TCTTCACTTTCATTTCAAAC+TGG | 0.317230 | 5_1:+64495080 | None:intergenic |
| TGCTCCTGAGGAAGCAAATC+TGG | 0.325320 | 5_1:+64497391 | None:intergenic |
| TGAGGAAATTCCAGCGGTTA+GGG | 0.343277 | 5_1:+64500850 | None:intergenic |
| GGGGAAGCGGTGGAAGAAAA+AGG | 0.345345 | 5_1:+64500870 | None:intergenic |
| CCTTCCAGATTTGCTTCCTC+AGG | 0.348453 | 5_1:-64497395 | Msa0743920:CDS |
| GGCCTACATAATTCTGTTGT+CGG | 0.351425 | 5_1:-64495265 | Msa0743920:three_prime_UTR |
| AAGAGGTTCAGGTAGGGTTT+TGG | 0.354118 | 5_1:+64501155 | None:intergenic |
| ACCGGCTACGGCGGTGGTTC+CGG | 0.354192 | 5_1:+64500803 | None:intergenic |
| AGCTCAGTTCTTTGAAATAG+TGG | 0.368246 | 5_1:-64497042 | Msa0743920:CDS |
| TTGGAGAGACATTGTTGTTA+TGG | 0.371901 | 5_1:+64501106 | None:intergenic |
| AAATGAAATGAAAGAGGTTC+AGG | 0.372153 | 5_1:+64501144 | None:intergenic |
| GAGAAACATGGAGGAGGTTG+AGG | 0.375735 | 5_1:+64501011 | None:intergenic |
| GAGACCTGCTACTAAGTATC+AGG | 0.375953 | 5_1:-64496842 | Msa0743920:CDS |
| GGAGGAGGAGTGGCGGAAGA+AGG | 0.377139 | 5_1:+64500900 | None:intergenic |
| ATGGTTCAAGACTCTAGTTC+AGG | 0.377307 | 5_1:+64495296 | None:intergenic |
| GTAGCGGAAGAGGGAGGAGG+TGG | 0.379260 | 5_1:+64500930 | None:intergenic |
| GAATGCTTAAATTTCCGTTA+AGG | 0.385398 | 5_1:-64495183 | Msa0743920:three_prime_UTR |
| ACTCTTGTTCAAGTTTCAAT+TGG | 0.392948 | 5_1:-64495134 | Msa0743920:three_prime_UTR |
| GGAGGAGTGGCGGAAGAAGG+TGG | 0.394550 | 5_1:+64500903 | None:intergenic |
| GAAGAGGGAGGAGGTGGAGA+AGG | 0.401258 | 5_1:+64500936 | None:intergenic |
| AGGTGGAGGAGTAGCGGAAG+AGG | 0.403611 | 5_1:+64500920 | None:intergenic |
| TCCAAATGATGCAGGAAAAC+CGG | 0.404155 | 5_1:-64495493 | Msa0743920:intron |
| TACGGCGGTGGTTCCGGTTA+AGG | 0.406728 | 5_1:+64500809 | None:intergenic |
| TTGAGGAAATTCCAGCGGTT+AGG | 0.408146 | 5_1:+64500849 | None:intergenic |
| GTGCAAACTTCTGTAATTTG+AGG | 0.410329 | 5_1:+64495157 | None:intergenic |
| AGGATCTTTCAAAACTAAAC+AGG | 0.413308 | 5_1:-64496527 | Msa0743920:CDS |
| GTAATTTGAGGAGTCCTTAA+CGG | 0.414369 | 5_1:+64495169 | None:intergenic |
| CGAACCGTAAGAGGCGTAAC+CGG | 0.415603 | 5_1:+64500785 | None:intergenic |
| GCTGCCATCGGTGCCTTAAC+CGG | 0.417543 | 5_1:-64500822 | Msa0743920:CDS |
| GAAGGAGTGGCAGAAGGAGG+AGG | 0.419573 | 5_1:+64500954 | None:intergenic |
| GGTTTATTGAAGAACACGTT+AGG | 0.429285 | 5_1:-64497556 | Msa0743920:CDS |
| GTATACAGATGAACAGAATA+TGG | 0.431740 | 5_1:-64497018 | Msa0743920:intron |
| ATAGAACACTAATTTAGATA+TGG | 0.431852 | 5_1:-64494995 | Msa0743920:three_prime_UTR |
| TCTGCACCCATGGCTTAATA+GGG | 0.437365 | 5_1:+64496436 | None:intergenic |
| AAATTTAGGTTGGTTGTTGA+AGG | 0.444026 | 5_1:-64495626 | Msa0743920:intron |
| CACCGATGGCAGCGTATTTG+AGG | 0.444864 | 5_1:+64500832 | None:intergenic |
| AGGAGGAGGTGGAGGAGGAG+TGG | 0.447975 | 5_1:+64500890 | None:intergenic |
| CAGGCGTTTCAAATTGCATA+AGG | 0.448133 | 5_1:-64496176 | Msa0743920:CDS |
| GGAGTAGCGGAAGAGGGAGG+AGG | 0.449116 | 5_1:+64500927 | None:intergenic |
| AGGAGGTGGAGGAGGAGTGG+CGG | 0.449841 | 5_1:+64500893 | None:intergenic |
| TGGATCCTAAGCACTGCATT+AGG | 0.453716 | 5_1:-64496876 | Msa0743920:CDS |
| ATTCCAGCGGTTAGGGGAAG+CGG | 0.455791 | 5_1:+64500857 | None:intergenic |
| GGTGGAGGAGTAGCGGAAGA+GGG | 0.456550 | 5_1:+64500921 | None:intergenic |
| TTATATCAGCCGGGCTAGTA+CGG | 0.463174 | 5_1:+64496248 | None:intergenic |
| GGGAGGAGGTGGAGAAGGAG+TGG | 0.463546 | 5_1:+64500941 | None:intergenic |
| AGTAGCAGCAGGAGCGGCGG+TGG | 0.464184 | 5_1:+64500986 | None:intergenic |
| GGTGGAGAAGGAGTGGCAGA+AGG | 0.464320 | 5_1:+64500948 | None:intergenic |
| CCATCCTGATACTTAGTAGC+AGG | 0.468851 | 5_1:+64496838 | None:intergenic |
| GGAGTGGCAGAAGGAGGAGG+AGG | 0.468973 | 5_1:+64500957 | None:intergenic |
| AGGAGGTTGAGGAGTGACTT+TGG | 0.474619 | 5_1:+64501022 | None:intergenic |
| TTATGCTTGCAGAAATTTCA+AGG | 0.477158 | 5_1:-64499058 | Msa0743920:intron |
| GGAGAAGGAGTGGCAGAAGG+AGG | 0.479566 | 5_1:+64500951 | None:intergenic |
| CCAGAGGCGTCTCTGTCCTC+CGG | 0.480081 | 5_1:+64495474 | None:intergenic |
| GGCGTAACCGGCTACGGCGG+TGG | 0.481279 | 5_1:+64500797 | None:intergenic |
| AGCACTGGTCTTATATCAGC+CGG | 0.483378 | 5_1:+64496238 | None:intergenic |
| CTTCACTTTCATTTCAAACT+GGG | 0.483745 | 5_1:+64495081 | None:intergenic |
| GGAAGGAGCTTGTCTGTGTA+TGG | 0.485204 | 5_1:+64497412 | None:intergenic |
| CACTCGGAATATCACATCCT+TGG | 0.486830 | 5_1:+64496206 | None:intergenic |
| TTAATAGGGACACAGTTCTC+AGG | 0.487617 | 5_1:+64496450 | None:intergenic |
| CTAAGCACTGCATTAGGTAC+AGG | 0.494989 | 5_1:-64496870 | Msa0743920:CDS |
| TTGCATTTGCAAAATGAAGT+TGG | 0.498368 | 5_1:-64495052 | Msa0743920:three_prime_UTR |
| TTGTAGACCCTGTTATAGAA+AGG | 0.499591 | 5_1:-64496900 | Msa0743920:CDS |
| GCAAAAGTTATGTACTTAAG+TGG | 0.505360 | 5_1:-64496498 | Msa0743920:CDS |
| GCTTGGCTTGGTGGAGACGC+CGG | 0.505360 | 5_1:+64501177 | None:intergenic |
| TTCAGTATTGTTACTTCCAG+AGG | 0.505530 | 5_1:+64495458 | None:intergenic |
| TAAAGCTCTACTGCTTTAGC+AGG | 0.507689 | 5_1:+64497593 | None:intergenic |
| AAAGCTTAACAGAGTTGATC+CGG | 0.510006 | 5_1:-64501196 | None:intergenic |
| AGACCCTGTTATAGAAAGGC+TGG | 0.510757 | 5_1:-64496896 | Msa0743920:CDS |
| TTCCAAGAAGGCATCAACTC+CGG | 0.511667 | 5_1:+64497070 | None:intergenic |
| CCTTGGTAAGACTGCAGCAC+TGG | 0.513048 | 5_1:+64496223 | None:intergenic |
| GGAGGAGTAGCGGAAGAGGG+AGG | 0.513402 | 5_1:+64500924 | None:intergenic |
| TATATCAGCCGGGCTAGTAC+GGG | 0.517337 | 5_1:+64496249 | None:intergenic |
| TCTTTATCAGTCTGCACCCA+TGG | 0.518730 | 5_1:+64496426 | None:intergenic |
| GTAATGTGCAGCTTATAGTT+CGG | 0.523902 | 5_1:-64500633 | Msa0743920:intron |
| CCGGAGGACAGAGACGCCTC+TGG | 0.524054 | 5_1:-64495474 | Msa0743920:CDS |
| TTATAGTTCGGACGAAATTG+AGG | 0.524378 | 5_1:-64500621 | Msa0743920:CDS |
| TCCAAGAAGGCATCAACTCC+GGG | 0.525377 | 5_1:+64497071 | None:intergenic |
| GTAGCCGGTTACGCCTCTTA+CGG | 0.529718 | 5_1:-64500789 | Msa0743920:intron |
| TGAATGAAATGAAATGAAAG+AGG | 0.529892 | 5_1:+64501138 | None:intergenic |
| GGACACAGTTCTCAGGTTGT+AGG | 0.531104 | 5_1:+64496457 | None:intergenic |
| TAAAGATGATACAGCTCTTG+TGG | 0.533851 | 5_1:-64496409 | Msa0743920:CDS |
| CTGTACCTAATGCAGTGCTT+AGG | 0.536001 | 5_1:+64496871 | None:intergenic |
| TCGAGAGAAGTAGCTCCATC+AGG | 0.536228 | 5_1:+64500557 | None:intergenic |
| GGAGGTGAATGAGTAGCAGC+AGG | 0.536311 | 5_1:+64500975 | None:intergenic |
| AGCTTTATTTGGATGCAAGA+AGG | 0.537430 | 5_1:-64497577 | Msa0743920:CDS |
| ATATTCCGAGTGAATTCCTC+AGG | 0.538760 | 5_1:-64496195 | Msa0743920:CDS |
| GGAGTGGCGGAAGAAGGTGG+AGG | 0.539928 | 5_1:+64500906 | None:intergenic |
| GTTTATTGAAGAACACGTTA+GGG | 0.542013 | 5_1:-64497555 | Msa0743920:intron |
| GTATACTCAACTGCAGTGAC+AGG | 0.543024 | 5_1:-64499031 | Msa0743920:intron |
| CTTGCAGAAATTTCAAGGGA+TGG | 0.544133 | 5_1:-64499053 | Msa0743920:intron |
| GAAATGAAAGAGGTTCAGGT+AGG | 0.550193 | 5_1:+64501148 | None:intergenic |
| ACCGGAACCACCGCCGTAGC+CGG | 0.551106 | 5_1:-64500804 | Msa0743920:CDS |
| TGGTTCAAGACTCTAGTTCA+GGG | 0.553194 | 5_1:+64495297 | None:intergenic |
| CCACCGCTTCCCCTAACCGC+TGG | 0.553504 | 5_1:-64500860 | Msa0743920:CDS |
| TATGCTTGCAGAAATTTCAA+GGG | 0.560032 | 5_1:-64499057 | Msa0743920:intron |
| GTGACTTTGGCGAAGCGGAA+TGG | 0.560847 | 5_1:+64501035 | None:intergenic |
| GTAGGCAACTTTCTAAAGCA+TGG | 0.562469 | 5_1:+64496475 | None:intergenic |
| CCTGCTACTAAGTATCAGGA+TGG | 0.566998 | 5_1:-64496838 | Msa0743920:CDS |
| CTGTGTCCCTATTAAGCCAT+GGG | 0.571381 | 5_1:-64496442 | Msa0743920:CDS |
| TTCCTCAAATACGCTGCCAT+CGG | 0.575985 | 5_1:-64500834 | Msa0743920:CDS |
| TGAATGAGTAGCAGCAGGAG+CGG | 0.576769 | 5_1:+64500980 | None:intergenic |
| ATCAGGTGGAGTGTACTTAG+CGG | 0.577775 | 5_1:+64500574 | None:intergenic |
| GCTAAGTACACTCCACCTGA+TGG | 0.578725 | 5_1:-64500572 | Msa0743920:CDS |
| AGTTATTGCCCGTACTAGCC+CGG | 0.582795 | 5_1:-64496257 | Msa0743920:CDS |
| TTTGAAATGAAAGTGAAGAG+TGG | 0.583317 | 5_1:-64495076 | Msa0743920:three_prime_UTR |
| AAATGAAAGAGGTTCAGGTA+GGG | 0.586182 | 5_1:+64501149 | None:intergenic |
| ATTGATTCACTACATTTGGA+CGG | 0.591226 | 5_1:-64497332 | Msa0743920:intron |
| GAGGAATGCACTTACACTCA+AGG | 0.594742 | 5_1:+64496373 | None:intergenic |
| GTAAGAGGCGTAACCGGCTA+CGG | 0.595627 | 5_1:+64500791 | None:intergenic |
| ATGTGAAGCGAGATACAAGC+TGG | 0.600307 | 5_1:-64497109 | Msa0743920:intron |
| GGAAGAAGGTGGAGGAGTAG+CGG | 0.600482 | 5_1:+64500914 | None:intergenic |
| ACTGTGTCCCTATTAAGCCA+TGG | 0.604101 | 5_1:-64496443 | Msa0743920:CDS |
| TACCGACAACAGAATTATGT+AGG | 0.612471 | 5_1:+64495263 | None:intergenic |
| CGACGGAGAAGAATCGAGAT+CGG | 0.613375 | 5_1:+64501078 | None:intergenic |
| TTGAAGCCACTGCAAAATCG+AGG | 0.614160 | 5_1:-64495362 | Msa0743920:three_prime_UTR |
| GGTTCCGGTTAAGGCACCGA+TGG | 0.615001 | 5_1:+64500818 | None:intergenic |
| CCTGAGGAAGCAAATCTGGA+AGG | 0.622399 | 5_1:+64497395 | None:intergenic |
| ATGCACTTACACTCAAGGAA+TGG | 0.623566 | 5_1:+64496378 | None:intergenic |
| CGATGACGATGATGCTGCGA+CGG | 0.623580 | 5_1:+64501061 | None:intergenic |
| GTGGATGAGAAACATGGAGG+AGG | 0.623914 | 5_1:+64501005 | None:intergenic |
| CTGAGCTAGATGTTCCAAGA+AGG | 0.625883 | 5_1:+64497058 | None:intergenic |
| AGAGAAGTAGCTCCATCAGG+TGG | 0.626174 | 5_1:+64500560 | None:intergenic |
| GCACTGGTCTTATATCAGCC+GGG | 0.635398 | 5_1:+64496239 | None:intergenic |
| GAGGAGTGACTTTGGCGAAG+CGG | 0.636601 | 5_1:+64501030 | None:intergenic |
| ATGAGTAGCAGCAGGAGCGG+CGG | 0.640320 | 5_1:+64500983 | None:intergenic |
| GCGGCGGTGGATGAGAAACA+TGG | 0.643040 | 5_1:+64500999 | None:intergenic |
| CCAGCGGTTAGGGGAAGCGG+TGG | 0.643133 | 5_1:+64500860 | None:intergenic |
| CTGCTACTAAGTATCAGGAT+GGG | 0.644510 | 5_1:-64496837 | Msa0743920:CDS |
| GTGAACACATGTTGCTCCTG+AGG | 0.649088 | 5_1:+64497379 | None:intergenic |
| GAGGAAATTCCAGCGGTTAG+GGG | 0.651443 | 5_1:+64500851 | None:intergenic |
| AAACGCCTGAGGAATTCACT+CGG | 0.654658 | 5_1:+64496190 | None:intergenic |
| GATCCAGCCTTTCTATAACA+GGG | 0.661553 | 5_1:+64496893 | None:intergenic |
| CGTATTTGAGGAAATTCCAG+CGG | 0.669655 | 5_1:+64500844 | None:intergenic |
| CCAGTGCTGCAGTCTTACCA+AGG | 0.672246 | 5_1:-64496223 | Msa0743920:CDS |
| TATGCAATTTGAAACGCCTG+AGG | 0.679211 | 5_1:+64496179 | None:intergenic |
| AAATGATGCAGGAAAACCGG+AGG | 0.687211 | 5_1:-64495490 | Msa0743920:intron |
| AGAGGCGTAACCGGCTACGG+CGG | 0.690683 | 5_1:+64500794 | None:intergenic |
| GCGGTGGATGAGAAACATGG+AGG | 0.755481 | 5_1:+64501002 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATTATATATTTAA+AGG | + | chr5_1:64497161-64497180 | None:intergenic | 0.0% |
| !!! | TTTTATGATATGATAATTAA+CGG | - | chr5_1:64497765-64497784 | Msa0743920:intron | 10.0% |
| !! | TTATTATAATAATATTGACA+CGG | - | chr5_1:64498382-64498401 | Msa0743920:intron | 10.0% |
| !!! | TTAACTGATTTAAAAAATTT+GGG | - | chr5_1:64499983-64500002 | Msa0743920:intron | 10.0% |
| !!! | AATATATTTGATTTCTAAAA+TGG | - | chr5_1:64501087-64501106 | Msa0743920:CDS | 10.0% |
| !! | TAACATATTAAATTGACTAA+AGG | + | chr5_1:64496489-64496508 | None:intergenic | 15.0% |
| !! | AGTCAATTTAATATGTTAAT+AGG | - | chr5_1:64496491-64496510 | Msa0743920:CDS | 15.0% |
| !!! | ATTTTTACTGTTTTGTTTAT+TGG | - | chr5_1:64496893-64496912 | Msa0743920:CDS | 15.0% |
| !! | TCATAGAAATATCTATTATA+CGG | - | chr5_1:64498002-64498021 | Msa0743920:intron | 15.0% |
| !! | TATTATAATAATATTGACAC+GGG | - | chr5_1:64498383-64498402 | Msa0743920:intron | 15.0% |
| !! | AAATATCAAATATCTTTGAA+TGG | - | chr5_1:64498839-64498858 | Msa0743920:intron | 15.0% |
| !! | AATATCAAATATCTTTGAAT+GGG | - | chr5_1:64498840-64498859 | Msa0743920:intron | 15.0% |
| !! | ATTAATGCTATGAAAATTTA+TGG | - | chr5_1:64498873-64498892 | Msa0743920:intron | 15.0% |
| !! | AGTAAAAATCAACATTATAT+AGG | + | chr5_1:64498970-64498989 | None:intergenic | 15.0% |
| !!! | TGTTGATTTTTACTTTTATT+TGG | - | chr5_1:64498976-64498995 | Msa0743920:intron | 15.0% |
| !!! | CTTAACTGATTTAAAAAATT+TGG | - | chr5_1:64499982-64500001 | Msa0743920:intron | 15.0% |
| !! | CTAAATTTATATCATATGTA+AGG | + | chr5_1:64500471-64500490 | None:intergenic | 15.0% |
| !! | CTTACATATGATATAAATTT+AGG | - | chr5_1:64500469-64500488 | Msa0743920:intron | 15.0% |
| !!! | AAATCTACATTTTATCTATT+TGG | + | chr5_1:64500783-64500802 | None:intergenic | 15.0% |
| !!! | AGTAATAAAACCTAAATTTT+AGG | - | chr5_1:64501137-64501156 | Msa0743920:CDS | 15.0% |
| !! | TATTTATTTGTTTGATGAAG+TGG | - | chr5_1:64496190-64496209 | Msa0743920:CDS | 20.0% |
| !!! | TTTTGTTTCTTGTTTTTAGT+CGG | + | chr5_1:64496738-64496757 | None:intergenic | 20.0% |
| !! | TAACATATTAAACTGACTAA+AGG | + | chr5_1:64496994-64497013 | None:intergenic | 20.0% |
| !! | AGTCAGTTTAATATGTTAAT+AGG | - | chr5_1:64496996-64497015 | Msa0743920:intron | 20.0% |
| !! | TATCTTATATCAGTATTGTT+CGG | - | chr5_1:64497133-64497152 | Msa0743920:intron | 20.0% |
| !! | TAATCATATCAATATGTAGT+AGG | - | chr5_1:64497691-64497710 | Msa0743920:intron | 20.0% |
| !! | AATCATATCAATATGTAGTA+GGG | - | chr5_1:64497692-64497711 | Msa0743920:intron | 20.0% |
| !! | ATTATAATAATATTGACACG+GGG | - | chr5_1:64498384-64498403 | Msa0743920:intron | 20.0% |
| !!! | ATATTTTTATATCCCCAAAA+CGG | + | chr5_1:64498825-64498844 | None:intergenic | 20.0% |
| !!! | AATTACATTTTATAGTTCAC+AGG | - | chr5_1:64500151-64500170 | Msa0743920:intron | 20.0% |
| !! | TCAAAAATGAGATACAAAAA+TGG | - | chr5_1:64500309-64500328 | Msa0743920:intron | 20.0% |
| !! | CAAAAATGAGATACAAAAAT+GGG | - | chr5_1:64500310-64500329 | Msa0743920:intron | 20.0% |
| !! | AAAAATGAGATACAAAAATG+GGG | - | chr5_1:64500311-64500330 | Msa0743920:intron | 20.0% |
| !! | AAATCCAGATATTAAATGAT+TGG | + | chr5_1:64500353-64500372 | None:intergenic | 20.0% |
| !! | CATATGATATAAATTTAGGT+TGG | - | chr5_1:64500473-64500492 | Msa0743920:intron | 20.0% |
| !!! | CTAAACAGGAATTTTTTTTT+AGG | - | chr5_1:64500534-64500553 | Msa0743920:intron | 20.0% |
| !! | ATAGAACACTAATTTAGATA+TGG | - | chr5_1:64501114-64501133 | Msa0743920:CDS | 20.0% |
| !! | GCAATAAAATCCTAAAATTT+AGG | + | chr5_1:64501150-64501169 | None:intergenic | 20.0% |
| ! | TGAATGAAATGAAATGAAAG+AGG | + | chr5_1:64494974-64494993 | None:intergenic | 25.0% |
| !!! | CGAATTTTTGTTTGATGAAA+TGG | - | chr5_1:64495692-64495711 | Msa0743920:intron | 25.0% |
| !! | ATTTTCTTACATTACTACCA+GGG | - | chr5_1:64495793-64495812 | Msa0743920:intron | 25.0% |
| ! | CCAATAAATTGACAAAATGT+GGG | + | chr5_1:64496277-64496296 | None:intergenic | 25.0% |
| ! | TCCAATAAATTGACAAAATG+TGG | + | chr5_1:64496278-64496297 | None:intergenic | 25.0% |
| !! | ACATTTTGTCAATTTATTGG+AGG | - | chr5_1:64496277-64496296 | Msa0743920:intron | 25.0% |
| ! | GACTAAAAACAAGAAACAAA+AGG | - | chr5_1:64496737-64496756 | Msa0743920:intron | 25.0% |
| ! | ATATCAACCTACTAATGTTA+AGG | + | chr5_1:64497022-64497041 | None:intergenic | 25.0% |
| ! | CAATACTGATATAAGATAAG+TGG | + | chr5_1:64497131-64497150 | None:intergenic | 25.0% |
| ! | AAATCACAAAAGAGATTTAG+TGG | + | chr5_1:64497615-64497634 | None:intergenic | 25.0% |
| ! | ATCATATCAATATGTAGTAG+GGG | - | chr5_1:64497693-64497712 | Msa0743920:intron | 25.0% |
| ! | TTGGTTTAGTTGTATTGTTA+AGG | - | chr5_1:64498081-64498100 | Msa0743920:intron | 25.0% |
| ! | TTTAGTTGTATTGTTAAGGA+GGG | - | chr5_1:64498085-64498104 | Msa0743920:intron | 25.0% |
| !!! | TGCCTTTTAAAATCATTAGA+CGG | - | chr5_1:64498254-64498273 | Msa0743920:intron | 25.0% |
| ! | TCTTGTAGAAGAATCAAATT+TGG | + | chr5_1:64498419-64498438 | None:intergenic | 25.0% |
| ! | TACACATGTACAAACTAATT+TGG | + | chr5_1:64498445-64498464 | None:intergenic | 25.0% |
| !! | TGCTTTTACTTCTCTAATTT+TGG | - | chr5_1:64498585-64498604 | Msa0743920:intron | 25.0% |
| ! | ATTAAAAGTTTAACACAAGG+TGG | + | chr5_1:64498642-64498661 | None:intergenic | 25.0% |
| ! | AGCATTAAAAGTTTAACACA+AGG | + | chr5_1:64498645-64498664 | None:intergenic | 25.0% |
| !! | GTGTTAAACTTTTAATGCTT+TGG | - | chr5_1:64498646-64498665 | Msa0743920:intron | 25.0% |
| !!! | AAACATTGATTCACTACATT+TGG | - | chr5_1:64498773-64498792 | Msa0743920:intron | 25.0% |
| ! | CAGTATCAAAATAAAATGAC+AGG | + | chr5_1:64499497-64499516 | None:intergenic | 25.0% |
| ! | TCATTTAAATACATCTCAAG+AGG | + | chr5_1:64499758-64499777 | None:intergenic | 25.0% |
| ! | TAACAAAAGAACAAAAACCT+TGG | + | chr5_1:64500022-64500041 | None:intergenic | 25.0% |
| ! | AAATGTAATTAACCAGACAA+GGG | + | chr5_1:64500141-64500160 | None:intergenic | 25.0% |
| ! | AAAATGTAATTAACCAGACA+AGG | + | chr5_1:64500142-64500161 | None:intergenic | 25.0% |
| !!! | TGCATATTTTGGCTTTTTTT+CGG | - | chr5_1:64500284-64500303 | Msa0743920:intron | 25.0% |
| !! | AAGTGAAGTTAATTTTCTTG+TGG | - | chr5_1:64500400-64500419 | Msa0743920:intron | 25.0% |
| ! | TATCATATGTAAGGTGAATT+AGG | + | chr5_1:64500462-64500481 | None:intergenic | 25.0% |
| AAATGAAATGAAAGAGGTTC+AGG | + | chr5_1:64494968-64494987 | None:intergenic | 30.0% | |
| ! | TTTCTTGAATCGTATTGATC+TGG | - | chr5_1:64495402-64495421 | Msa0743920:exon | 30.0% |
| ! | CATTTTCTTACATTACTACC+AGG | - | chr5_1:64495792-64495811 | Msa0743920:intron | 30.0% |
| AATTATGACAAAACTCAGCA+TGG | - | chr5_1:64495840-64495859 | Msa0743920:intron | 30.0% | |
| ATTCACTGTAATCACATATG+TGG | - | chr5_1:64496065-64496084 | Msa0743920:intron | 30.0% | |
| TTCACTGTAATCACATATGT+GGG | - | chr5_1:64496066-64496085 | Msa0743920:intron | 30.0% | |
| ! | CCCACATTTTGTCAATTTAT+TGG | - | chr5_1:64496274-64496293 | Msa0743920:intron | 30.0% |
| TTGGATGTAACACTTTGATA+TGG | - | chr5_1:64496310-64496329 | Msa0743920:intron | 30.0% | |
| AAACAAAAGGCCTAAAAACA+GGG | - | chr5_1:64496750-64496769 | Msa0743920:intron | 30.0% | |
| GACTAAAAACAGGAAACAAA+AGG | - | chr5_1:64496780-64496799 | Msa0743920:intron | 30.0% | |
| AAACAAAAGGCCTAAAAACA+GGG | - | chr5_1:64496750-64496769 | Msa0743920:intron | 30.0% | |
| TTAAGTTCATGTTGCATAAG+AGG | + | chr5_1:64496862-64496881 | None:intergenic | 30.0% | |
| ! | GTTTATTGGAATTCCTTTTG+TGG | - | chr5_1:64496907-64496926 | Msa0743920:intron | 30.0% |
| TAATAGGCCTTAACATTAGT+AGG | - | chr5_1:64497012-64497031 | Msa0743920:intron | 30.0% | |
| TTATGCTTGCAGAAATTTCA+AGG | - | chr5_1:64497051-64497070 | Msa0743920:CDS | 30.0% | |
| TATGCTTGCAGAAATTTCAA+GGG | - | chr5_1:64497052-64497071 | Msa0743920:CDS | 30.0% | |
| TGTAAAAGTGATCCTTCTTT+CGG | + | chr5_1:64497492-64497511 | None:intergenic | 30.0% | |
| AAGTACAAACATGAATCGAA+TGG | - | chr5_1:64497580-64497599 | Msa0743920:CDS | 30.0% | |
| ! | GTGATTTTGTGTAGTTATCT+TGG | - | chr5_1:64497628-64497647 | Msa0743920:intron | 30.0% |
| GTTTAGTTGTATTGTTAAGG+AGG | - | chr5_1:64498084-64498103 | Msa0743920:intron | 30.0% | |
| ACAAATCCAAAAATCAAACG+TGG | - | chr5_1:64498165-64498184 | Msa0743920:intron | 30.0% | |
| !! | ATTATGCCACGTTTGATTTT+TGG | + | chr5_1:64498174-64498193 | None:intergenic | 30.0% |
| CCAATTTAATTCTAATGCAC+CGG | - | chr5_1:64498212-64498231 | Msa0743920:intron | 30.0% | |
| AGTTTCCTCAAAATCAAAAC+CGG | + | chr5_1:64498234-64498253 | None:intergenic | 30.0% | |
| ! | TGCCGTCTAATGATTTTAAA+AGG | + | chr5_1:64498259-64498278 | None:intergenic | 30.0% |
| ! | ATCATTAGACGGCATATTTT+AGG | - | chr5_1:64498265-64498284 | Msa0743920:intron | 30.0% |
| AACGAAATCTCCTAAAAGTA+TGG | - | chr5_1:64498321-64498340 | Msa0743920:intron | 30.0% | |
| ! | ATGTGATATGCCATACTTTT+AGG | + | chr5_1:64498334-64498353 | None:intergenic | 30.0% |
| !! | TAAAGCAGTAGAGCTTTATT+TGG | - | chr5_1:64498521-64498540 | Msa0743920:intron | 30.0% |
| GTTTATTGAAGAACACGTTA+GGG | - | chr5_1:64498554-64498573 | Msa0743920:intron | 30.0% | |
| GTGGAAAAACATGAAAAGAA+AGG | + | chr5_1:64498623-64498642 | None:intergenic | 30.0% | |
| ! | ATTGATTCACTACATTTGGA+CGG | - | chr5_1:64498777-64498796 | Msa0743920:intron | 30.0% |
| GTATACAGATGAACAGAATA+TGG | - | chr5_1:64499091-64499110 | Msa0743920:intron | 30.0% | |
| ! | TTGTTTCTCTGTATTCTGAA+TGG | - | chr5_1:64499124-64499143 | Msa0743920:intron | 30.0% |
| ATGTCTTTAGTATGTTCTTC+AGG | + | chr5_1:64499449-64499468 | None:intergenic | 30.0% | |
| AAAATGACAGGAAAAAGCAA+AGG | + | chr5_1:64499485-64499504 | None:intergenic | 30.0% | |
| !! | ATTTTGATACTGCACAAATG+TGG | - | chr5_1:64499505-64499524 | Msa0743920:intron | 30.0% |
| AGGATCTTTCAAAACTAAAC+AGG | - | chr5_1:64499582-64499601 | Msa0743920:intron | 30.0% | |
| ! | CTTAAGTACATAACTTTTGC+AGG | + | chr5_1:64499611-64499630 | None:intergenic | 30.0% |
| GCAAAAGTTATGTACTTAAG+TGG | - | chr5_1:64499611-64499630 | Msa0743920:intron | 30.0% | |
| CAATAACTGCATATGGATAA+TGG | + | chr5_1:64499840-64499859 | None:intergenic | 30.0% | |
| ! | TTTTCCATTACAAATCTGTG+AGG | - | chr5_1:64500185-64500204 | Msa0743920:intron | 30.0% |
| TTGCTTCTATTATTGCTGTA+TGG | - | chr5_1:64500209-64500228 | Msa0743920:intron | 30.0% | |
| TTGATGCAAAAGTTAAGTAG+AGG | - | chr5_1:64500261-64500280 | Msa0743920:intron | 30.0% | |
| !! | TTAAGTAGAGGTGCATATTT+TGG | - | chr5_1:64500273-64500292 | Msa0743920:intron | 30.0% |
| !! | AAATTTAGGTTGGTTGTTGA+AGG | - | chr5_1:64500483-64500502 | Msa0743920:intron | 30.0% |
| ! | ACAAATAGTTGATGCTAAAC+AGG | - | chr5_1:64500520-64500539 | Msa0743920:intron | 30.0% |
| AAACACCAGAGTAAAAATGT+TGG | + | chr5_1:64500596-64500615 | None:intergenic | 30.0% | |
| !!! | AGTCTTGAACCATCATTTTT+TGG | - | chr5_1:64500823-64500842 | Msa0743920:CDS | 30.0% |
| TTATGTAGGCCAAAAAATGA+TGG | + | chr5_1:64500835-64500854 | None:intergenic | 30.0% | |
| GAATGCTTAAATTTCCGTTA+AGG | - | chr5_1:64500926-64500945 | Msa0743920:CDS | 30.0% | |
| ! | ACTCTTGTTCAAGTTTCAAT+TGG | - | chr5_1:64500975-64500994 | Msa0743920:CDS | 30.0% |
| CTTCACTTTCATTTCAAACT+GGG | + | chr5_1:64501031-64501050 | None:intergenic | 30.0% | |
| TCTTCACTTTCATTTCAAAC+TGG | + | chr5_1:64501032-64501051 | None:intergenic | 30.0% | |
| ! | TTTGAAATGAAAGTGAAGAG+TGG | - | chr5_1:64501033-64501052 | Msa0743920:CDS | 30.0% |
| TTGCATTTGCAAAATGAAGT+TGG | - | chr5_1:64501057-64501076 | Msa0743920:CDS | 30.0% | |
| AAATGAAAGAGGTTCAGGTA+GGG | + | chr5_1:64494963-64494982 | None:intergenic | 35.0% | |
| ! | TTGGAGAGACATTGTTGTTA+TGG | + | chr5_1:64495006-64495025 | None:intergenic | 35.0% |
| AGAAAAATACGAACCGTAAG+AGG | + | chr5_1:64495336-64495355 | None:intergenic | 35.0% | |
| CAGTGAAAACAGAAATGAAG+AGG | + | chr5_1:64495363-64495382 | None:intergenic | 35.0% | |
| GTAATGTGCAGCTTATAGTT+CGG | - | chr5_1:64495476-64495495 | Msa0743920:CDS | 35.0% | |
| TTATAGTTCGGACGAAATTG+AGG | - | chr5_1:64495488-64495507 | Msa0743920:intron | 35.0% | |
| TTATAATCTATCACACTCCC+TGG | + | chr5_1:64495813-64495832 | None:intergenic | 35.0% | |
| TGTTCATGTTTGTGCTTCAT+AGG | + | chr5_1:64495995-64496014 | None:intergenic | 35.0% | |
| ACAAACATGAACATCGAACA+CGG | - | chr5_1:64496002-64496021 | Msa0743920:intron | 35.0% | |
| TTGTCAATTTATTGGAGGTG+TGG | - | chr5_1:64496282-64496301 | Msa0743920:intron | 35.0% | |
| GATGTAACACTTTGATATGG+TGG | - | chr5_1:64496313-64496332 | Msa0743920:intron | 35.0% | |
| TCTGCATTGTTTGAATGTGA+TGG | - | chr5_1:64496451-64496470 | Msa0743920:CDS | 35.0% | |
| TAATAGGCCTCAACATTAGT+AGG | - | chr5_1:64496507-64496526 | Msa0743920:CDS | 35.0% | |
| ATGTCAACCTACTAATGTTG+AGG | + | chr5_1:64496517-64496536 | None:intergenic | 35.0% | |
| AAACCACATCACCAACATAA+GGG | - | chr5_1:64496707-64496726 | Msa0743920:intron | 35.0% | |
| GAAACAAAAGGCCTAAAAAC+AGG | - | chr5_1:64496749-64496768 | Msa0743920:intron | 35.0% | |
| GAAACAAAAGGCCTAAAAAC+AGG | - | chr5_1:64496749-64496768 | Msa0743920:intron | 35.0% | |
| !! | GTATGTTGTTCCCTGTTTTT+AGG | + | chr5_1:64496806-64496825 | None:intergenic | 35.0% |
| ! | ACAGCACTATTGCTTAGTTT+TGG | - | chr5_1:64496930-64496949 | Msa0743920:intron | 35.0% |
| TGTTGCGTATACATGAACAT+TGG | - | chr5_1:64497223-64497242 | Msa0743920:intron | 35.0% | |
| TGGAACTAAATGGCATATGA+TGG | + | chr5_1:64497250-64497269 | None:intergenic | 35.0% | |
| CATACCCTTGACCTAAATAA+GGG | - | chr5_1:64497268-64497287 | Msa0743920:intron | 35.0% | |
| ! | ACTTCCCTTATTTAGGTCAA+GGG | + | chr5_1:64497275-64497294 | None:intergenic | 35.0% |
| TAAAAGTGATCCTTCTTTCG+GGG | + | chr5_1:64497490-64497509 | None:intergenic | 35.0% | |
| GTAAAAGTGATCCTTCTTTC+GGG | + | chr5_1:64497491-64497510 | None:intergenic | 35.0% | |
| TTGTGTAGTTATCTTGGCTA+TGG | - | chr5_1:64497634-64497653 | Msa0743920:intron | 35.0% | |
| ATTACCAGTGTTGTCAATTG+TGG | + | chr5_1:64497947-64497966 | None:intergenic | 35.0% | |
| ! | TGTACAGAGTACAGTTCTTT+TGG | + | chr5_1:64497981-64498000 | None:intergenic | 35.0% |
| TAACTAGCAAAGAAGTCAAG+TGG | - | chr5_1:64498055-64498074 | Msa0743920:intron | 35.0% | |
| AACTAGCAAAGAAGTCAAGT+GGG | - | chr5_1:64498056-64498075 | Msa0743920:intron | 35.0% | |
| ATCAAACGTGGCATAATTCT+TGG | - | chr5_1:64498177-64498196 | Msa0743920:intron | 35.0% | |
| TCAAACGTGGCATAATTCTT+GGG | - | chr5_1:64498178-64498197 | Msa0743920:intron | 35.0% | |
| CCGGTGCATTAGAATTAAAT+TGG | + | chr5_1:64498215-64498234 | None:intergenic | 35.0% | |
| GGCACTAAAATATTACATGC+AGG | + | chr5_1:64498498-64498517 | None:intergenic | 35.0% | |
| !! | AGCTTTATTTGGATGCAAGA+AGG | - | chr5_1:64498532-64498551 | Msa0743920:intron | 35.0% |
| GGTTTATTGAAGAACACGTT+AGG | - | chr5_1:64498553-64498572 | Msa0743920:intron | 35.0% | |
| !! | AGCTCAGTTCTTTGAAATAG+TGG | - | chr5_1:64499067-64499086 | Msa0743920:intron | 35.0% |
| TTGTAGACCCTGTTATAGAA+AGG | - | chr5_1:64499209-64499228 | Msa0743920:intron | 35.0% | |
| TAAAGATGATACAGCTCTTG+TGG | - | chr5_1:64499700-64499719 | Msa0743920:intron | 35.0% | |
| CAATCCTCACAGATTTGTAA+TGG | + | chr5_1:64500192-64500211 | None:intergenic | 35.0% | |
| CTTCTATTATTGCTGTATGG+TGG | - | chr5_1:64500212-64500231 | Msa0743920:intron | 35.0% | |
| AGCGCCAATCATTTAATATC+TGG | - | chr5_1:64500346-64500365 | Msa0743920:intron | 35.0% | |
| ! | TTCAGTATTGTTACTTCCAG+AGG | + | chr5_1:64500654-64500673 | None:intergenic | 35.0% |
| TACCGACAACAGAATTATGT+AGG | + | chr5_1:64500849-64500868 | None:intergenic | 35.0% | |
| GTAATTTGAGGAGTCCTTAA+CGG | + | chr5_1:64500943-64500962 | None:intergenic | 35.0% | |
| GTGCAAACTTCTGTAATTTG+AGG | + | chr5_1:64500955-64500974 | None:intergenic | 35.0% | |
| GAAATGAAAGAGGTTCAGGT+AGG | + | chr5_1:64494964-64494983 | None:intergenic | 40.0% | |
| AGAATCGAGATCGGAGAATT+TGG | + | chr5_1:64495025-64495044 | None:intergenic | 40.0% | |
| CGTATTTGAGGAAATTCCAG+CGG | + | chr5_1:64495268-64495287 | None:intergenic | 40.0% | |
| ! | ATGTCTTCGAACAGAAGTGT+CGG | + | chr5_1:64495738-64495757 | None:intergenic | 40.0% |
| CTAGCGTGAATTGTTGTGTT+TGG | - | chr5_1:64495968-64495987 | Msa0743920:intron | 40.0% | |
| ! | GCACTGACACTTCTAATTGA+AGG | + | chr5_1:64496138-64496157 | None:intergenic | 40.0% |
| CGAGTTGCAAAATTTGTGTG+TGG | - | chr5_1:64496238-64496257 | Msa0743920:CDS | 40.0% | |
| ! | TATTGGAGGTGTGGTATCTT+TGG | - | chr5_1:64496291-64496310 | Msa0743920:intron | 40.0% |
| !! | TATGTTGGTGATGTGGTTTG+TGG | + | chr5_1:64496706-64496725 | None:intergenic | 40.0% |
| CAAACCACATCACCAACATA+AGG | - | chr5_1:64496706-64496725 | Msa0743920:intron | 40.0% | |
| !! | GTCAGTTGTTCCCTGTTTTT+AGG | + | chr5_1:64496763-64496782 | None:intergenic | 40.0% |
| GGGAACAACTGACTAAAAAC+AGG | - | chr5_1:64496770-64496789 | Msa0743920:intron | 40.0% | |
| !!! | CTTAGTTTTGGAGCTTTGCA+TGG | - | chr5_1:64496942-64496961 | Msa0743920:intron | 40.0% |
| !!! | TTTTGGAGCTTTGCATGGTT+AGG | - | chr5_1:64496947-64496966 | Msa0743920:intron | 40.0% |
| CTTGCAGAAATTTCAAGGGA+TGG | - | chr5_1:64497056-64497075 | Msa0743920:CDS | 40.0% | |
| TGGCGTACAGAATAAAGCTA+GGG | + | chr5_1:64497111-64497130 | None:intergenic | 40.0% | |
| ! | GTCAAGGGTATGGAACTAAA+TGG | + | chr5_1:64497260-64497279 | None:intergenic | 40.0% |
| ! | CCTTATTTAGGTCAAGGGTA+TGG | + | chr5_1:64497270-64497289 | None:intergenic | 40.0% |
| CCATACCCTTGACCTAAATA+AGG | - | chr5_1:64497267-64497286 | Msa0743920:intron | 40.0% | |
| ! | GACTTCCCTTATTTAGGTCA+AGG | + | chr5_1:64497276-64497295 | None:intergenic | 40.0% |
| ! | CCTAAGGACTTCCCTTATTT+AGG | + | chr5_1:64497282-64497301 | None:intergenic | 40.0% |
| CCTAAATAAGGGAAGTCCTT+AGG | - | chr5_1:64497279-64497298 | Msa0743920:intron | 40.0% | |
| GTGGGAAAGTTAAAGTGAGA+GGG | - | chr5_1:64497354-64497373 | Msa0743920:CDS | 40.0% | |
| AGTTCCTGCTTTGCATGAAA+GGG | - | chr5_1:64497455-64497474 | Msa0743920:intron | 40.0% | |
| CGATTCATGTTTGTACTTGC+AGG | + | chr5_1:64497578-64497597 | None:intergenic | 40.0% | |
| GCAAGCAGCAATTTATCCAT+GGG | + | chr5_1:64497720-64497739 | None:intergenic | 40.0% | |
| TGCAAGCAGCAATTTATCCA+TGG | + | chr5_1:64497721-64497740 | None:intergenic | 40.0% | |
| !! | TGTGGATAGCGGAAATTTGT+GGG | + | chr5_1:64497929-64497948 | None:intergenic | 40.0% |
| !! | TTGTGGATAGCGGAAATTTG+TGG | + | chr5_1:64497930-64497949 | None:intergenic | 40.0% |
| GTGTTGTCAATTGTGGATAG+CGG | + | chr5_1:64497940-64497959 | None:intergenic | 40.0% | |
| CTATCCACAATTGACAACAC+TGG | - | chr5_1:64497940-64497959 | Msa0743920:intron | 40.0% | |
| TCCTCTGTAGCATTTGATCA+GGG | - | chr5_1:64498027-64498046 | Msa0743920:intron | 40.0% | |
| !!! | ATGCACCGGTTTTGATTTTG+AGG | - | chr5_1:64498226-64498245 | Msa0743920:intron | 40.0% |
| TAAAGCTCTACTGCTTTAGC+AGG | + | chr5_1:64498519-64498538 | None:intergenic | 40.0% | |
| ! | TGTATGGTTCTGTATAACCC+TGG | + | chr5_1:64498684-64498703 | None:intergenic | 40.0% |
| !! | TGGCAGACTTTTAAAAGACC+CGG | - | chr5_1:64499020-64499039 | Msa0743920:intron | 40.0% |
| GATCCAGCCTTTCTATAACA+GGG | + | chr5_1:64499219-64499238 | None:intergenic | 40.0% | |
| CTGCTACTAAGTATCAGGAT+GGG | - | chr5_1:64499272-64499291 | Msa0743920:intron | 40.0% | |
| ! | TTTTTCCCTTTGCCTGTCAT+TGG | - | chr5_1:64499558-64499577 | Msa0743920:intron | 40.0% |
| !! | GTAGGCAACTTTCTAAAGCA+TGG | + | chr5_1:64499637-64499656 | None:intergenic | 40.0% |
| TTAATAGGGACACAGTTCTC+AGG | + | chr5_1:64499662-64499681 | None:intergenic | 40.0% | |
| ATGCACTTACACTCAAGGAA+TGG | + | chr5_1:64499734-64499753 | None:intergenic | 40.0% | |
| !! | CTGCATATGGATAATGGAGA+AGG | + | chr5_1:64499834-64499853 | None:intergenic | 40.0% |
| ATATTCCGAGTGAATTCCTC+AGG | - | chr5_1:64499914-64499933 | Msa0743920:intron | 40.0% | |
| ! | TATGCAATTTGAAACGCCTG+AGG | + | chr5_1:64499933-64499952 | None:intergenic | 40.0% |
| CAGGCGTTTCAAATTGCATA+AGG | - | chr5_1:64499933-64499952 | Msa0743920:intron | 40.0% | |
| TGGGAACTATATTGCAACCA+AGG | - | chr5_1:64500002-64500021 | Msa0743920:intron | 40.0% | |
| GTAATTAACCAGACAAGGGT+GGG | + | chr5_1:64500137-64500156 | None:intergenic | 40.0% | |
| TGTAATTAACCAGACAAGGG+TGG | + | chr5_1:64500138-64500157 | None:intergenic | 40.0% | |
| ! | ATTATTGCTGTATGGTGGTG+TGG | - | chr5_1:64500217-64500236 | Msa0743920:intron | 40.0% |
| ! | TTATTGCTGTATGGTGGTGT+GGG | - | chr5_1:64500218-64500237 | Msa0743920:intron | 40.0% |
| TGAATTAGGAGTGACATGGT+GGG | + | chr5_1:64500448-64500467 | None:intergenic | 40.0% | |
| AAGGTGAATTAGGAGTGACA+TGG | + | chr5_1:64500452-64500471 | None:intergenic | 40.0% | |
| ATGTTGGCGGAAATAAGACA+GGG | + | chr5_1:64500580-64500599 | None:intergenic | 40.0% | |
| AATGTTGGCGGAAATAAGAC+AGG | + | chr5_1:64500581-64500600 | None:intergenic | 40.0% | |
| ! | TTCCGCCAACATTTTTACTC+TGG | - | chr5_1:64500588-64500607 | Msa0743920:CDS | 40.0% |
| CACCAGAGTAAAAATGTTGG+CGG | + | chr5_1:64500593-64500612 | None:intergenic | 40.0% | |
| ! | TGGTGTTTTCCAAATGATGC+AGG | - | chr5_1:64500608-64500627 | Msa0743920:CDS | 40.0% |
| TCCAAATGATGCAGGAAAAC+CGG | - | chr5_1:64500616-64500635 | Msa0743920:CDS | 40.0% | |
| ! | TGGTTCAAGACTCTAGTTCA+GGG | + | chr5_1:64500815-64500834 | None:intergenic | 40.0% |
| ! | ATGGTTCAAGACTCTAGTTC+AGG | + | chr5_1:64500816-64500835 | None:intergenic | 40.0% |
| GGCCTACATAATTCTGTTGT+CGG | - | chr5_1:64500844-64500863 | Msa0743920:CDS | 40.0% | |
| ! | AAGAGGTTCAGGTAGGGTTT+TGG | + | chr5_1:64494957-64494976 | None:intergenic | 45.0% |
| TGAGGAAATTCCAGCGGTTA+GGG | + | chr5_1:64495262-64495281 | None:intergenic | 45.0% | |
| TTGAGGAAATTCCAGCGGTT+AGG | + | chr5_1:64495263-64495282 | None:intergenic | 45.0% | |
| TTCCTCAAATACGCTGCCAT+CGG | - | chr5_1:64495275-64495294 | Msa0743920:three_prime_UTR | 45.0% | |
| ATCAGGTGGAGTGTACTTAG+CGG | + | chr5_1:64495538-64495557 | None:intergenic | 45.0% | |
| ! | CACATATGTGGGTGTCATGT+CGG | - | chr5_1:64496077-64496096 | Msa0743920:intron | 45.0% |
| TATTGGACAGTGACACGTGT+TGG | - | chr5_1:64496100-64496119 | Msa0743920:intron | 45.0% | |
| !! | TAGAAGTGTCAGTGCTACAG+AGG | - | chr5_1:64496143-64496162 | Msa0743920:intron | 45.0% |
| AACCAAGCATAAGACGAGCA+AGG | - | chr5_1:64496647-64496666 | Msa0743920:intron | 45.0% | |
| !! | GTTCCCTTATGTTGGTGATG+TGG | + | chr5_1:64496713-64496732 | None:intergenic | 45.0% |
| AGTCGGTTGTTCCCTTATGT+TGG | + | chr5_1:64496721-64496740 | None:intergenic | 45.0% | |
| GCAATAGTGCTGTCCACAAA+AGG | + | chr5_1:64496923-64496942 | None:intergenic | 45.0% | |
| GTATACTCAACTGCAGTGAC+AGG | - | chr5_1:64497078-64497097 | Msa0743920:CDS | 45.0% | |
| GGCGTACAGAATAAAGCTAG+GGG | + | chr5_1:64497110-64497129 | None:intergenic | 45.0% | |
| GTGGCGTACAGAATAAAGCT+AGG | + | chr5_1:64497112-64497131 | None:intergenic | 45.0% | |
| TGCTTTCTCCAAGTTGCCTA+AGG | + | chr5_1:64497298-64497317 | None:intergenic | 45.0% | |
| CTTTCCCACCACTATCCATT+CGG | + | chr5_1:64497343-64497362 | None:intergenic | 45.0% | |
| GGTGGGAAAGTTAAAGTGAG+AGG | - | chr5_1:64497353-64497372 | Msa0743920:CDS | 45.0% | |
| TCCTCTCAGGATAACTGCTT+GGG | + | chr5_1:64497380-64497399 | None:intergenic | 45.0% | |
| TATCCTGAGAGGAGTTGAGA+AGG | - | chr5_1:64497387-64497406 | Msa0743920:CDS | 45.0% | |
| ATCCTGAGAGGAGTTGAGAA+GGG | - | chr5_1:64497388-64497407 | Msa0743920:CDS | 45.0% | |
| AGGAGTTGAGAAGGGAGTTA+GGG | - | chr5_1:64497396-64497415 | Msa0743920:CDS | 45.0% | |
| CAGTTCCTGCTTTGCATGAA+AGG | - | chr5_1:64497454-64497473 | Msa0743920:intron | 45.0% | |
| GTTCCTGCTTTGCATGAAAG+GGG | - | chr5_1:64497456-64497475 | Msa0743920:intron | 45.0% | |
| !! | CTTTGCATGAAAGGGGTACT+TGG | - | chr5_1:64497463-64497482 | Msa0743920:intron | 45.0% |
| ! | AGTCAAGGGCGGTATGTTTT+GGG | + | chr5_1:64497519-64497538 | None:intergenic | 45.0% |
| AATATGTAGTAGGGGTCCCA+TGG | - | chr5_1:64497701-64497720 | Msa0743920:intron | 45.0% | |
| CTGATCAAATGCTACAGAGG+AGG | + | chr5_1:64498028-64498047 | None:intergenic | 45.0% | |
| CTCCTCTGTAGCATTTGATC+AGG | - | chr5_1:64498026-64498045 | Msa0743920:intron | 45.0% | |
| CAAAGAAGTCAAGTGGGCAT+TGG | - | chr5_1:64498062-64498081 | Msa0743920:intron | 45.0% | |
| GTTGTATTGTTAAGGAGGGC+TGG | - | chr5_1:64498089-64498108 | Msa0743920:intron | 45.0% | |
| TATAACCCTGGAAGGAAGCA+TGG | + | chr5_1:64498672-64498691 | None:intergenic | 45.0% | |
| ! | TGGTTCTGTATAACCCTGGA+AGG | + | chr5_1:64498680-64498699 | None:intergenic | 45.0% |
| ! | AACCTCACATGCACCGTTTT+GGG | - | chr5_1:64498809-64498828 | Msa0743920:intron | 45.0% |
| ATGTGAAGCGAGATACAAGC+TGG | - | chr5_1:64499000-64499019 | Msa0743920:intron | 45.0% | |
| !! | TTCCAAGAAGGCATCAACTC+CGG | + | chr5_1:64499042-64499061 | None:intergenic | 45.0% |
| CTGAGCTAGATGTTCCAAGA+AGG | + | chr5_1:64499054-64499073 | None:intergenic | 45.0% | |
| AGACCCTGTTATAGAAAGGC+TGG | - | chr5_1:64499213-64499232 | Msa0743920:intron | 45.0% | |
| GGATCCAGCCTTTCTATAAC+AGG | + | chr5_1:64499220-64499239 | None:intergenic | 45.0% | |
| ! | TGGATCCTAAGCACTGCATT+AGG | - | chr5_1:64499233-64499252 | Msa0743920:intron | 45.0% |
| CTGTACCTAATGCAGTGCTT+AGG | + | chr5_1:64499241-64499260 | None:intergenic | 45.0% | |
| ! | CTAAGCACTGCATTAGGTAC+AGG | - | chr5_1:64499239-64499258 | Msa0743920:intron | 45.0% |
| GAGACCTGCTACTAAGTATC+AGG | - | chr5_1:64499267-64499286 | Msa0743920:intron | 45.0% | |
| CCATCCTGATACTTAGTAGC+AGG | + | chr5_1:64499274-64499293 | None:intergenic | 45.0% | |
| CCTGCTACTAAGTATCAGGA+TGG | - | chr5_1:64499271-64499290 | Msa0743920:intron | 45.0% | |
| TGAAAGATCCTGCCAATGAC+AGG | + | chr5_1:64499573-64499592 | None:intergenic | 45.0% | |
| ACTGTGTCCCTATTAAGCCA+TGG | - | chr5_1:64499666-64499685 | Msa0743920:intron | 45.0% | |
| CTGTGTCCCTATTAAGCCAT+GGG | - | chr5_1:64499667-64499686 | Msa0743920:intron | 45.0% | |
| TCTGCACCCATGGCTTAATA+GGG | + | chr5_1:64499676-64499695 | None:intergenic | 45.0% | |
| TCTTTATCAGTCTGCACCCA+TGG | + | chr5_1:64499686-64499705 | None:intergenic | 45.0% | |
| GAGGAATGCACTTACACTCA+AGG | + | chr5_1:64499739-64499758 | None:intergenic | 45.0% | |
| GTACGGGCAATAACTGCATA+TGG | + | chr5_1:64499847-64499866 | None:intergenic | 45.0% | |
| !! | TTATATCAGCCGGGCTAGTA+CGG | + | chr5_1:64499864-64499883 | None:intergenic | 45.0% |
| !! | AGCACTGGTCTTATATCAGC+CGG | + | chr5_1:64499874-64499893 | None:intergenic | 45.0% |
| CACTCGGAATATCACATCCT+TGG | + | chr5_1:64499906-64499925 | None:intergenic | 45.0% | |
| AAACGCCTGAGGAATTCACT+CGG | + | chr5_1:64499922-64499941 | None:intergenic | 45.0% | |
| GTGAATTAGGAGTGACATGG+TGG | + | chr5_1:64500449-64500468 | None:intergenic | 45.0% | |
| ! | TCCGGTTTTCCTGCATCATT+TGG | + | chr5_1:64500620-64500639 | None:intergenic | 45.0% |
| AAATGATGCAGGAAAACCGG+AGG | - | chr5_1:64500619-64500638 | Msa0743920:CDS | 45.0% | |
| TTGAAGCCACTGCAAAATCG+AGG | - | chr5_1:64500747-64500766 | Msa0743920:intron | 45.0% | |
| ! | ATCACTCCTCGATTTTGCAG+TGG | + | chr5_1:64500756-64500775 | None:intergenic | 45.0% |
| !!! | TAAATATATAATTAATTTTG+AGG | - | chr5_1:64497162-64497181 | Msa0743920:intron | 5.0% |
| !!! | GTTCAGGTAGGGTTTTGGCT+TGG | + | chr5_1:64494952-64494971 | None:intergenic | 50.0% |
| CGACGGAGAAGAATCGAGAT+CGG | + | chr5_1:64495034-64495053 | None:intergenic | 50.0% | |
| AGGAGGTTGAGGAGTGACTT+TGG | + | chr5_1:64495090-64495109 | None:intergenic | 50.0% | |
| GAGAAACATGGAGGAGGTTG+AGG | + | chr5_1:64495101-64495120 | None:intergenic | 50.0% | |
| GTGGATGAGAAACATGGAGG+AGG | + | chr5_1:64495107-64495126 | None:intergenic | 50.0% | |
| TGAATGAGTAGCAGCAGGAG+CGG | + | chr5_1:64495132-64495151 | None:intergenic | 50.0% | |
| GAAGAAAAAGGAGGAGGTGG+AGG | + | chr5_1:64495230-64495249 | None:intergenic | 50.0% | |
| GTGGAAGAAAAAGGAGGAGG+TGG | + | chr5_1:64495233-64495252 | None:intergenic | 50.0% | |
| GAAGCGGTGGAAGAAAAAGG+AGG | + | chr5_1:64495239-64495258 | None:intergenic | 50.0% | |
| GAGGAAATTCCAGCGGTTAG+GGG | + | chr5_1:64495261-64495280 | None:intergenic | 50.0% | |
| GCTAAGTACACTCCACCTGA+TGG | - | chr5_1:64495537-64495556 | Msa0743920:intron | 50.0% | |
| AGAGAAGTAGCTCCATCAGG+TGG | + | chr5_1:64495552-64495571 | None:intergenic | 50.0% | |
| TCGAGAGAAGTAGCTCCATC+AGG | + | chr5_1:64495555-64495574 | None:intergenic | 50.0% | |
| ! | TGTGGGTGTCATGTCGGTAT+TGG | - | chr5_1:64496083-64496102 | Msa0743920:intron | 50.0% |
| CAGTGACACGTGTTGGACAT+CGG | - | chr5_1:64496107-64496126 | Msa0743920:intron | 50.0% | |
| GTGGCTCTTCGAATACGAAC+TGG | - | chr5_1:64496209-64496228 | Msa0743920:CDS | 50.0% | |
| TACTCAACTGCAGTGACAGG+TGG | - | chr5_1:64497081-64497100 | Msa0743920:CDS | 50.0% | |
| ACTCAACTGCAGTGACAGGT+GGG | - | chr5_1:64497082-64497101 | Msa0743920:CDS | 50.0% | |
| CATGTGAGTGTCTCTTCCCT+TGG | - | chr5_1:64497190-64497209 | Msa0743920:intron | 50.0% | |
| GTGTCTCTTCCCTTGGACTT+CGG | - | chr5_1:64497197-64497216 | Msa0743920:intron | 50.0% | |
| TGTCTCTTCCCTTGGACTTC+GGG | - | chr5_1:64497198-64497217 | Msa0743920:intron | 50.0% | |
| GCAACATTCCCGAAGTCCAA+GGG | + | chr5_1:64497209-64497228 | None:intergenic | 50.0% | |
| AGGGAAGTCCTTAGGCAACT+TGG | - | chr5_1:64497287-64497306 | Msa0743920:intron | 50.0% | |
| ! | ACTTGGAGAAAGCATGTGCC+TGG | - | chr5_1:64497304-64497323 | Msa0743920:intron | 50.0% |
| ! | GAGTCCGAATGGATAGTGGT+GGG | - | chr5_1:64497336-64497355 | Msa0743920:CDS | 50.0% |
| CTCCTCTCAGGATAACTGCT+TGG | + | chr5_1:64497381-64497400 | None:intergenic | 50.0% | |
| GAGGAGTTGAGAAGGGAGTT+AGG | - | chr5_1:64497395-64497414 | Msa0743920:CDS | 50.0% | |
| AGGGAAAAGAACCTCCCACT+AGG | - | chr5_1:64497415-64497434 | Msa0743920:CDS | 50.0% | |
| GAAAAGAACCTCCCACTAGG+TGG | - | chr5_1:64497418-64497437 | Msa0743920:CDS | 50.0% | |
| CCTTCCTCAAACCACCTAGT+GGG | + | chr5_1:64497432-64497451 | None:intergenic | 50.0% | |
| CCACTAGGTGGTTTGAGGAA+GGG | - | chr5_1:64497430-64497449 | Msa0743920:intron | 50.0% | |
| CACTAGGTGGTTTGAGGAAG+GGG | - | chr5_1:64497431-64497450 | Msa0743920:intron | 50.0% | |
| GTACCCCTTTCATGCAAAGC+AGG | + | chr5_1:64497462-64497481 | None:intergenic | 50.0% | |
| ! | CAGTCAAGGGCGGTATGTTT+TGG | + | chr5_1:64497520-64497539 | None:intergenic | 50.0% |
| CAAAACATACCGCCCTTGAC+TGG | - | chr5_1:64497518-64497537 | Msa0743920:intron | 50.0% | |
| ! | AGTGTTGTTCCAGTCAAGGG+CGG | + | chr5_1:64497530-64497549 | None:intergenic | 50.0% |
| ! | GGCAGTGTTGTTCCAGTCAA+GGG | + | chr5_1:64497533-64497552 | None:intergenic | 50.0% |
| ! | TGGCAGTGTTGTTCCAGTCA+AGG | + | chr5_1:64497534-64497553 | None:intergenic | 50.0% |
| TGACTGGAACAACACTGCCA+AGG | - | chr5_1:64497534-64497553 | Msa0743920:intron | 50.0% | |
| GACTGGAACAACACTGCCAA+GGG | - | chr5_1:64497535-64497554 | Msa0743920:intron | 50.0% | |
| AACACTGCCAAGGGTAGGAA+TGG | - | chr5_1:64497544-64497563 | Msa0743920:intron | 50.0% | |
| AGTACGACCATTCCTACCCT+TGG | + | chr5_1:64497554-64497573 | None:intergenic | 50.0% | |
| GCTGCTTGCATATGCGCATT+AGG | - | chr5_1:64497731-64497750 | Msa0743920:intron | 50.0% | |
| GTTATGCTGCGATGTCGTAG+CGG | - | chr5_1:64497824-64497843 | Msa0743920:intron | 50.0% | |
| GCCCTGATCAAATGCTACAG+AGG | + | chr5_1:64498031-64498050 | None:intergenic | 50.0% | |
| TTTGGCCATGCTTCCTTCCA+GGG | - | chr5_1:64498664-64498683 | Msa0743920:intron | 50.0% | |
| GGAAGGAGCTTGTCTGTGTA+TGG | + | chr5_1:64498700-64498719 | None:intergenic | 50.0% | |
| CCTGAGGAAGCAAATCTGGA+AGG | + | chr5_1:64498717-64498736 | None:intergenic | 50.0% | |
| ! | CCTTCCAGATTTGCTTCCTC+AGG | - | chr5_1:64498714-64498733 | Msa0743920:intron | 50.0% |
| TGCTCCTGAGGAAGCAAATC+TGG | + | chr5_1:64498721-64498740 | None:intergenic | 50.0% | |
| GTGAACACATGTTGCTCCTG+AGG | + | chr5_1:64498733-64498752 | None:intergenic | 50.0% | |
| ! | CAACCTCACATGCACCGTTT+TGG | - | chr5_1:64498808-64498827 | Msa0743920:intron | 50.0% |
| ! | ACCTCACATGCACCGTTTTG+GGG | - | chr5_1:64498810-64498829 | Msa0743920:intron | 50.0% |
| !! | TCCAAGAAGGCATCAACTCC+GGG | + | chr5_1:64499041-64499060 | None:intergenic | 50.0% |
| TCCTGCCAATGACAGGCAAA+GGG | + | chr5_1:64499566-64499585 | None:intergenic | 50.0% | |
| ATCCTGCCAATGACAGGCAA+AGG | + | chr5_1:64499567-64499586 | None:intergenic | 50.0% | |
| ! | GGACACAGTTCTCAGGTTGT+AGG | + | chr5_1:64499655-64499674 | None:intergenic | 50.0% |
| GTCTGCACCCATGGCTTAAT+AGG | + | chr5_1:64499677-64499696 | None:intergenic | 50.0% | |
| AGTTATTGCCCGTACTAGCC+CGG | - | chr5_1:64499852-64499871 | Msa0743920:intron | 50.0% | |
| !! | TATATCAGCCGGGCTAGTAC+GGG | + | chr5_1:64499863-64499882 | None:intergenic | 50.0% |
| !! | GCACTGGTCTTATATCAGCC+GGG | + | chr5_1:64499873-64499892 | None:intergenic | 50.0% |
| ! | TGTATGGTGGTGTGGGACAA+GGG | - | chr5_1:64500225-64500244 | Msa0743920:intron | 50.0% |
| !!! | AGGGTTTTGGCTTGGCTTGG+TGG | + | chr5_1:64494944-64494963 | None:intergenic | 55.0% |
| !!! | GGTAGGGTTTTGGCTTGGCT+TGG | + | chr5_1:64494947-64494966 | None:intergenic | 55.0% |
| CGATGACGATGATGCTGCGA+CGG | + | chr5_1:64495051-64495070 | None:intergenic | 55.0% | |
| GTGACTTTGGCGAAGCGGAA+TGG | + | chr5_1:64495077-64495096 | None:intergenic | 55.0% | |
| GAGGAGTGACTTTGGCGAAG+CGG | + | chr5_1:64495082-64495101 | None:intergenic | 55.0% | |
| GCGGTGGATGAGAAACATGG+AGG | + | chr5_1:64495110-64495129 | None:intergenic | 55.0% | |
| GGAGGTGAATGAGTAGCAGC+AGG | + | chr5_1:64495137-64495156 | None:intergenic | 55.0% | |
| GGAAGAAGGTGGAGGAGTAG+CGG | + | chr5_1:64495198-64495217 | None:intergenic | 55.0% | |
| GAAAAAGGAGGAGGTGGAGG+AGG | + | chr5_1:64495227-64495246 | None:intergenic | 55.0% | |
| GCGGTGGAAGAAAAAGGAGG+AGG | + | chr5_1:64495236-64495255 | None:intergenic | 55.0% | |
| GGGGAAGCGGTGGAAGAAAA+AGG | + | chr5_1:64495242-64495261 | None:intergenic | 55.0% | |
| ATTCCAGCGGTTAGGGGAAG+CGG | + | chr5_1:64495255-64495274 | None:intergenic | 55.0% | |
| CACCGATGGCAGCGTATTTG+AGG | + | chr5_1:64495280-64495299 | None:intergenic | 55.0% | |
| ! | GTAAGAGGCGTAACCGGCTA+CGG | + | chr5_1:64495321-64495340 | None:intergenic | 55.0% |
| GTAGCCGGTTACGCCTCTTA+CGG | - | chr5_1:64495320-64495339 | Msa0743920:three_prime_UTR | 55.0% | |
| ! | CGAACCGTAAGAGGCGTAAC+CGG | + | chr5_1:64495327-64495346 | None:intergenic | 55.0% |
| CGCCTTGCTCGTCTTATGCT+TGG | + | chr5_1:64496652-64496671 | None:intergenic | 55.0% | |
| CGCAACATTCCCGAAGTCCA+AGG | + | chr5_1:64497210-64497229 | None:intergenic | 55.0% | |
| AAAGCATGTGCCTGGCGTGT+GGG | - | chr5_1:64497312-64497331 | Msa0743920:intron | 55.0% | |
| ! | CGAGTCCGAATGGATAGTGG+TGG | - | chr5_1:64497335-64497354 | Msa0743920:CDS | 55.0% |
| GCCCAAGCAGTTATCCTGAG+AGG | - | chr5_1:64497376-64497395 | Msa0743920:CDS | 55.0% | |
| CTCCCTTCTCAACTCCTCTC+AGG | + | chr5_1:64497393-64497412 | None:intergenic | 55.0% | |
| ACCTCCCACTAGGTGGTTTG+AGG | - | chr5_1:64497425-64497444 | Msa0743920:CDS | 55.0% | |
| TCCTCAAACCACCTAGTGGG+AGG | + | chr5_1:64497429-64497448 | None:intergenic | 55.0% | |
| CCCACTAGGTGGTTTGAGGA+AGG | - | chr5_1:64497429-64497448 | Msa0743920:intron | 55.0% | |
| CCCTTCCTCAAACCACCTAG+TGG | + | chr5_1:64497433-64497452 | None:intergenic | 55.0% | |
| GGTACTTGGTCCCCGAAAGA+AGG | - | chr5_1:64497477-64497496 | Msa0743920:intron | 55.0% | |
| GGAACAACACTGCCAAGGGT+AGG | - | chr5_1:64497539-64497558 | Msa0743920:intron | 55.0% | |
| CTTTGGCCATGCTTCCTTCC+AGG | - | chr5_1:64498663-64498682 | Msa0743920:intron | 55.0% | |
| TCCCCAAAACGGTGCATGTG+AGG | + | chr5_1:64498814-64498833 | None:intergenic | 55.0% | |
| !! | ACCCGGAGTTGATGCCTTCT+TGG | - | chr5_1:64499037-64499056 | Msa0743920:CDS | 55.0% |
| TCCCTTTGCCTGTCATTGGC+AGG | - | chr5_1:64499562-64499581 | Msa0743920:intron | 55.0% | |
| CCTTGGTAAGACTGCAGCAC+TGG | + | chr5_1:64499889-64499908 | None:intergenic | 55.0% | |
| CCAGTGCTGCAGTCTTACCA+AGG | - | chr5_1:64499886-64499905 | Msa0743920:intron | 55.0% | |
| AAACTACGCCCACCCTTGTC+TGG | - | chr5_1:64500126-64500145 | Msa0743920:intron | 55.0% | |
| ! | CTGTATGGTGGTGTGGGACA+AGG | - | chr5_1:64500224-64500243 | Msa0743920:intron | 55.0% |
| GCGGCGGTGGATGAGAAACA+TGG | + | chr5_1:64495113-64495132 | None:intergenic | 60.0% | |
| ATGAGTAGCAGCAGGAGCGG+CGG | + | chr5_1:64495129-64495148 | None:intergenic | 60.0% | |
| GAAGGAGTGGCAGAAGGAGG+AGG | + | chr5_1:64495158-64495177 | None:intergenic | 60.0% | |
| GGAGAAGGAGTGGCAGAAGG+AGG | + | chr5_1:64495161-64495180 | None:intergenic | 60.0% | |
| GGTGGAGAAGGAGTGGCAGA+AGG | + | chr5_1:64495164-64495183 | None:intergenic | 60.0% | |
| GAAGAGGGAGGAGGTGGAGA+AGG | + | chr5_1:64495176-64495195 | None:intergenic | 60.0% | |
| ! | GGTGGAGGAGTAGCGGAAGA+GGG | + | chr5_1:64495191-64495210 | None:intergenic | 60.0% |
| ! | AGGTGGAGGAGTAGCGGAAG+AGG | + | chr5_1:64495192-64495211 | None:intergenic | 60.0% |
| ! | GCTGCCATCGGTGCCTTAAC+CGG | - | chr5_1:64495287-64495306 | Msa0743920:three_prime_UTR | 60.0% |
| !! | GGTTCCGGTTAAGGCACCGA+TGG | + | chr5_1:64495294-64495313 | None:intergenic | 60.0% |
| TACGGCGGTGGTTCCGGTTA+AGG | + | chr5_1:64495303-64495322 | None:intergenic | 60.0% | |
| ! | GAAAGCATGTGCCTGGCGTG+TGG | - | chr5_1:64497311-64497330 | Msa0743920:intron | 60.0% |
| GGGCGAGTCCGAATGGATAG+TGG | - | chr5_1:64497332-64497351 | Msa0743920:intron | 60.0% | |
| GTGTGGGACAAGGGACAGTC+TGG | - | chr5_1:64500234-64500253 | Msa0743920:intron | 60.0% | |
| !! | GCTTGGCTTGGTGGAGACGC+CGG | + | chr5_1:64494935-64494954 | None:intergenic | 65.0% |
| GGAGTGGCAGAAGGAGGAGG+AGG | + | chr5_1:64495155-64495174 | None:intergenic | 65.0% | |
| GGGAGGAGGTGGAGAAGGAG+TGG | + | chr5_1:64495171-64495190 | None:intergenic | 65.0% | |
| ! | GTAGCGGAAGAGGGAGGAGG+TGG | + | chr5_1:64495182-64495201 | None:intergenic | 65.0% |
| ! | GGAGTAGCGGAAGAGGGAGG+AGG | + | chr5_1:64495185-64495204 | None:intergenic | 65.0% |
| ! | GGAGGAGTAGCGGAAGAGGG+AGG | + | chr5_1:64495188-64495207 | None:intergenic | 65.0% |
| ! | GGAGTGGCGGAAGAAGGTGG+AGG | + | chr5_1:64495206-64495225 | None:intergenic | 65.0% |
| ! | GGAGGAGTGGCGGAAGAAGG+TGG | + | chr5_1:64495209-64495228 | None:intergenic | 65.0% |
| ! | GGAGGAGGAGTGGCGGAAGA+AGG | + | chr5_1:64495212-64495231 | None:intergenic | 65.0% |
| AGGAGGTGGAGGAGGAGTGG+CGG | + | chr5_1:64495219-64495238 | None:intergenic | 65.0% | |
| AGGAGGAGGTGGAGGAGGAG+TGG | + | chr5_1:64495222-64495241 | None:intergenic | 65.0% | |
| ! | AGAGGCGTAACCGGCTACGG+CGG | + | chr5_1:64495318-64495337 | None:intergenic | 65.0% |
| !! | CCAGAGGCGTCTCTGTCCTC+CGG | + | chr5_1:64500638-64500657 | None:intergenic | 65.0% |
| AGTAGCAGCAGGAGCGGCGG+TGG | + | chr5_1:64495126-64495145 | None:intergenic | 70.0% | |
| CCAGCGGTTAGGGGAAGCGG+TGG | + | chr5_1:64495252-64495271 | None:intergenic | 70.0% | |
| CCACCGCTTCCCCTAACCGC+TGG | - | chr5_1:64495249-64495268 | Msa0743920:three_prime_UTR | 70.0% | |
| ACCGGAACCACCGCCGTAGC+CGG | - | chr5_1:64495305-64495324 | Msa0743920:three_prime_UTR | 70.0% | |
| ACCGGCTACGGCGGTGGTTC+CGG | + | chr5_1:64495309-64495328 | None:intergenic | 70.0% | |
| TTCGGACTCGCCCACACGCC+AGG | + | chr5_1:64497325-64497344 | None:intergenic | 70.0% | |
| GGCGTGTGGGCGAGTCCGAA+TGG | - | chr5_1:64497325-64497344 | Msa0743920:intron | 70.0% | |
| CCGGAGGACAGAGACGCCTC+TGG | - | chr5_1:64500635-64500654 | Msa0743920:intron | 70.0% | |
| GGCGTAACCGGCTACGGCGG+TGG | + | chr5_1:64495315-64495334 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 64494927 | 64501204 | 64494927 | ID=Msa0743920;Name=Msa0743920 |
| chr5_1 | mRNA | 64494927 | 64501204 | 64494927 | ID=Msa0743920-mRNA-1;Parent=Msa0743920;Name=Msa0743920-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.8|0.81|0.90|0.8|0.81|11|480|430 |
| chr5_1 | exon | 64494927 | 64495501 | 64494927 | ID=Msa0743920-mRNA-1:exon:19090;Parent=Msa0743920-mRNA-1 |
| chr5_1 | exon | 64495627 | 64495640 | 64495627 | ID=Msa0743920-mRNA-1:exon:19089;Parent=Msa0743920-mRNA-1 |
| chr5_1 | exon | 64496175 | 64496277 | 64496175 | ID=Msa0743920-mRNA-1:exon:19088;Parent=Msa0743920-mRNA-1 |
| chr5_1 | exon | 64496388 | 64496547 | 64496388 | ID=Msa0743920-mRNA-1:exon:19087;Parent=Msa0743920-mRNA-1 |
| chr5_1 | exon | 64496825 | 64496923 | 64496825 | ID=Msa0743920-mRNA-1:exon:19086;Parent=Msa0743920-mRNA-1 |
| chr5_1 | exon | 64497019 | 64497123 | 64497019 | ID=Msa0743920-mRNA-1:exon:19085;Parent=Msa0743920-mRNA-1 |
| chr5_1 | exon | 64497333 | 64497446 | 64497333 | ID=Msa0743920-mRNA-1:exon:19084;Parent=Msa0743920-mRNA-1 |
| chr5_1 | exon | 64497556 | 64497617 | 64497556 | ID=Msa0743920-mRNA-1:exon:19083;Parent=Msa0743920-mRNA-1 |
| chr5_1 | exon | 64499032 | 64499068 | 64499032 | ID=Msa0743920-mRNA-1:exon:19082;Parent=Msa0743920-mRNA-1 |
| chr5_1 | exon | 64500556 | 64500644 | 64500556 | ID=Msa0743920-mRNA-1:exon:19081;Parent=Msa0743920-mRNA-1 |
| chr5_1 | exon | 64500790 | 64501204 | 64500790 | ID=Msa0743920-mRNA-1:exon:19080;Parent=Msa0743920-mRNA-1 |
| chr5_1 | CDS | 64500790 | 64501204 | 64500790 | ID=Msa0743920-mRNA-1:cds;Parent=Msa0743920-mRNA-1 |
| chr5_1 | CDS | 64500556 | 64500644 | 64500556 | ID=Msa0743920-mRNA-1:cds;Parent=Msa0743920-mRNA-1 |
| chr5_1 | CDS | 64499032 | 64499068 | 64499032 | ID=Msa0743920-mRNA-1:cds;Parent=Msa0743920-mRNA-1 |
| chr5_1 | CDS | 64497556 | 64497617 | 64497556 | ID=Msa0743920-mRNA-1:cds;Parent=Msa0743920-mRNA-1 |
| chr5_1 | CDS | 64497333 | 64497446 | 64497333 | ID=Msa0743920-mRNA-1:cds;Parent=Msa0743920-mRNA-1 |
| chr5_1 | CDS | 64497019 | 64497123 | 64497019 | ID=Msa0743920-mRNA-1:cds;Parent=Msa0743920-mRNA-1 |
| chr5_1 | CDS | 64496825 | 64496923 | 64496825 | ID=Msa0743920-mRNA-1:cds;Parent=Msa0743920-mRNA-1 |
| chr5_1 | CDS | 64496388 | 64496547 | 64496388 | ID=Msa0743920-mRNA-1:cds;Parent=Msa0743920-mRNA-1 |
| chr5_1 | CDS | 64496175 | 64496277 | 64496175 | ID=Msa0743920-mRNA-1:cds;Parent=Msa0743920-mRNA-1 |
| chr5_1 | CDS | 64495627 | 64495640 | 64495627 | ID=Msa0743920-mRNA-1:cds;Parent=Msa0743920-mRNA-1 |
| chr5_1 | CDS | 64495407 | 64495501 | 64495407 | ID=Msa0743920-mRNA-1:cds;Parent=Msa0743920-mRNA-1 |
| chr5_1 | three_prime_UTR | 64494927 | 64495406 | 64494927 | ID=Msa0743920-mRNA-1:three_prime_utr;Parent=Msa0743920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
