Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139110 | XP_003617793.1 | 90.164 | 366 | 34 | 1 | 30 | 395 | 1 | 364 | 0.0 | 606 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139110 | sp|Q8VYE2|TIM50_ARATH | 60.289 | 277 | 106 | 2 | 116 | 389 | 81 | 356 | 1.81e-119 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139110 | G7K4N6 | 90.164 | 366 | 34 | 1 | 30 | 395 | 1 | 364 | 0.0 | 606 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0139110 | Msa0149980 | 0.807816 | 4.202294e-50 | -8.615850e-47 |
| Msa0139110 | Msa0252470 | 0.803089 | 4.117831e-49 | -8.615850e-47 |
| Msa0139110 | Msa0291960 | 0.814143 | 1.789902e-51 | -8.615850e-47 |
| Msa0139110 | Msa0333220 | 0.810716 | 1.003649e-50 | -8.615850e-47 |
| Msa0139110 | Msa0743920 | 0.998437 | 4.772780e-265 | -8.615850e-47 |
| Msa0139110 | Msa0748180 | 0.995515 | 4.812047e-217 | -8.615850e-47 |
| Msa0139110 | Msa0864230 | 0.994816 | 1.868582e-210 | -8.615850e-47 |
| Msa0139110 | Msa1071040 | 0.802967 | 4.363639e-49 | -8.615850e-47 |
| Msa0139110 | Msa1115190 | 0.801506 | 8.720440e-49 | -8.615850e-47 |
| Msa0139110 | Msa1159030 | 0.804503 | 2.093484e-49 | -8.615850e-47 |
| Msa0139110 | Msa1163980 | 0.819403 | 1.183125e-52 | -8.615850e-47 |
| Msa0139110 | Msa1428870 | 0.939099 | 2.243470e-99 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139110 | MtrunA17_Chr5g0446321 | 90.164 | 366 | 34 | 1 | 30 | 395 | 1 | 364 | 0.0 | 606 |
| Msa0139110 | MtrunA17_Chr3g0078241 | 34.973 | 183 | 95 | 6 | 212 | 374 | 282 | 460 | 4.91e-20 | 92.0 |
| Msa0139110 | MtrunA17_Chr2g0303951 | 32.973 | 185 | 104 | 6 | 211 | 379 | 286 | 466 | 3.32e-19 | 89.7 |
| Msa0139110 | MtrunA17_Chr5g0419741 | 30.526 | 190 | 100 | 5 | 224 | 396 | 126 | 300 | 2.58e-17 | 82.4 |
| Msa0139110 | MtrunA17_Chr3g0122541 | 31.293 | 147 | 82 | 4 | 215 | 342 | 268 | 414 | 1.55e-14 | 75.5 |
| Msa0139110 | MtrunA17_Chr2g0284551 | 30.573 | 157 | 90 | 2 | 203 | 343 | 91 | 244 | 3.21e-14 | 72.8 |
| Msa0139110 | MtrunA17_Chr3g0113611 | 28.671 | 143 | 96 | 4 | 246 | 386 | 129 | 267 | 1.41e-12 | 67.8 |
| Msa0139110 | MtrunA17_Chr5g0437111 | 28.244 | 131 | 90 | 3 | 246 | 374 | 155 | 283 | 9.23e-12 | 65.9 |
| Msa0139110 | MtrunA17_Chr3g0122521 | 32.632 | 95 | 63 | 1 | 249 | 342 | 59 | 153 | 3.96e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139110 | AT1G55900.2 | 60.215 | 279 | 107 | 2 | 116 | 391 | 81 | 358 | 1.02e-120 | 356 |
| Msa0139110 | AT1G55900.1 | 60.289 | 277 | 106 | 2 | 116 | 389 | 81 | 356 | 1.84e-120 | 355 |
| Msa0139110 | AT5G11860.3 | 29.834 | 181 | 105 | 5 | 213 | 374 | 99 | 276 | 2.08e-17 | 82.8 |
| Msa0139110 | AT5G11860.5 | 29.834 | 181 | 105 | 5 | 213 | 374 | 99 | 276 | 2.08e-17 | 82.8 |
| Msa0139110 | AT5G11860.1 | 29.834 | 181 | 105 | 5 | 213 | 374 | 99 | 276 | 2.08e-17 | 82.8 |
| Msa0139110 | AT5G11860.4 | 29.834 | 181 | 105 | 5 | 213 | 374 | 99 | 276 | 2.08e-17 | 82.8 |
| Msa0139110 | AT5G11860.2 | 29.834 | 181 | 105 | 5 | 213 | 374 | 99 | 276 | 2.08e-17 | 82.8 |
| Msa0139110 | AT5G45700.1 | 31.638 | 177 | 98 | 5 | 224 | 381 | 99 | 271 | 4.92e-15 | 75.5 |
| Msa0139110 | AT1G29780.1 | 31.169 | 154 | 88 | 4 | 224 | 360 | 51 | 203 | 1.44e-14 | 73.2 |
| Msa0139110 | AT5G46410.2 | 31.737 | 167 | 95 | 5 | 224 | 374 | 285 | 448 | 1.50e-14 | 75.9 |
| Msa0139110 | AT5G46410.3 | 31.737 | 167 | 95 | 5 | 224 | 374 | 282 | 445 | 1.58e-14 | 75.5 |
| Msa0139110 | AT5G46410.1 | 31.737 | 167 | 95 | 5 | 224 | 374 | 282 | 445 | 1.58e-14 | 75.5 |
| Msa0139110 | AT3G55960.1 | 30.075 | 133 | 85 | 4 | 246 | 374 | 155 | 283 | 1.23e-13 | 71.6 |
| Msa0139110 | AT1G29770.1 | 29.032 | 155 | 91 | 4 | 224 | 360 | 104 | 257 | 4.91e-12 | 66.6 |
Find 146 sgRNAs with CRISPR-Local
Find 427 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATATTTGATTTCTAAAA+TGG | 0.149532 | 1_3:-72380890 | Msa0139110:three_prime_UTR |
| GCAATAAAATCCTAAAATTT+AGG | 0.175512 | 1_3:+72380830 | None:intergenic |
| GTCTGCACCCATGGCTTAAT+AGG | 0.239907 | 1_3:+72382302 | None:intergenic |
| AGAATCGAGATCGGAGAATT+TGG | 0.254120 | 1_3:+72386944 | None:intergenic |
| AAACATTGATTCACTACATT+TGG | 0.275640 | 1_3:-72383203 | Msa0139110:CDS |
| GGATCCAGCCTTTCTATAAC+AGG | 0.280220 | 1_3:+72382759 | None:intergenic |
| ACCCGGAGTTGATGCCTTCT+TGG | 0.287511 | 1_3:-72382939 | Msa0139110:CDS |
| TAAAGCAGTAGAGCTTTATT+TGG | 0.300211 | 1_3:-72383455 | Msa0139110:CDS |
| TCTTCACTTTCATTTCAAAC+TGG | 0.317230 | 1_3:+72380948 | None:intergenic |
| TGCTCCTGAGGAAGCAAATC+TGG | 0.325320 | 1_3:+72383258 | None:intergenic |
| TGAGGAAATTCCAGCGGTTA+GGG | 0.343277 | 1_3:+72386707 | None:intergenic |
| GGGGAAGCGGTGGAAGAAAA+AGG | 0.345345 | 1_3:+72386727 | None:intergenic |
| CCTTCCAGATTTGCTTCCTC+AGG | 0.348453 | 1_3:-72383262 | Msa0139110:CDS |
| GGCCTACATAATTCTGTTGT+CGG | 0.351425 | 1_3:-72381133 | Msa0139110:three_prime_UTR |
| AAGAGGTTCAGGTAGGGTTT+TGG | 0.354118 | 1_3:+72387012 | None:intergenic |
| ACCGGCTACGGCGGTGGTTC+CGG | 0.354192 | 1_3:+72386660 | None:intergenic |
| AGCTCAGTTCTTTGAAATAG+TGG | 0.368246 | 1_3:-72382909 | Msa0139110:CDS |
| TTGGAGAGACATTGTTGTTA+TGG | 0.371901 | 1_3:+72386963 | None:intergenic |
| AAATGAAATGAAAGAGGTTC+AGG | 0.372153 | 1_3:+72387001 | None:intergenic |
| GAGAAACATGGAGGAGGTTG+AGG | 0.375735 | 1_3:+72386868 | None:intergenic |
| GAGACCTGCTACTAAGTATC+AGG | 0.375953 | 1_3:-72382709 | Msa0139110:CDS |
| GGAGGAGGAGTGGCGGAAGA+AGG | 0.377139 | 1_3:+72386757 | None:intergenic |
| ATGGTTCAAGACTCTAGTTC+AGG | 0.377307 | 1_3:+72381164 | None:intergenic |
| GTAGCGGAAGAGGGAGGAGG+TGG | 0.379260 | 1_3:+72386787 | None:intergenic |
| GAATGCTTAAATTTCCGTTA+AGG | 0.385398 | 1_3:-72381051 | Msa0139110:three_prime_UTR |
| ACTCTTGTTCAAGTTTCAAT+TGG | 0.392948 | 1_3:-72381002 | Msa0139110:three_prime_UTR |
| GGAGGAGTGGCGGAAGAAGG+TGG | 0.394550 | 1_3:+72386760 | None:intergenic |
| GAAGAGGGAGGAGGTGGAGA+AGG | 0.401258 | 1_3:+72386793 | None:intergenic |
| AGGTGGAGGAGTAGCGGAAG+AGG | 0.403611 | 1_3:+72386777 | None:intergenic |
| TCCAAATGATGCAGGAAAAC+CGG | 0.404155 | 1_3:-72381361 | Msa0139110:intron |
| TACGGCGGTGGTTCCGGTTA+AGG | 0.406728 | 1_3:+72386666 | None:intergenic |
| TTGAGGAAATTCCAGCGGTT+AGG | 0.408146 | 1_3:+72386706 | None:intergenic |
| GTGCAAACTTCTGTAATTTG+AGG | 0.410329 | 1_3:+72381025 | None:intergenic |
| AGGATCTTTCAAAACTAAAC+AGG | 0.413308 | 1_3:-72382394 | Msa0139110:CDS |
| GTAATTTGAGGAGTCCTTAA+CGG | 0.414369 | 1_3:+72381037 | None:intergenic |
| CGAACCGTAAGAGGCGTAAC+CGG | 0.415603 | 1_3:+72386642 | None:intergenic |
| GCTGCCATCGGTGCCTTAAC+CGG | 0.417543 | 1_3:-72386679 | Msa0139110:CDS |
| GAAGGAGTGGCAGAAGGAGG+AGG | 0.419573 | 1_3:+72386811 | None:intergenic |
| GGTTTATTGAAGAACACGTT+AGG | 0.429285 | 1_3:-72383423 | Msa0139110:CDS |
| GTATACAGATGAACAGAATA+TGG | 0.431740 | 1_3:-72382885 | Msa0139110:intron |
| ATAGAACACTAATTTAGATA+TGG | 0.431852 | 1_3:-72380863 | Msa0139110:three_prime_UTR |
| TCTGCACCCATGGCTTAATA+GGG | 0.437365 | 1_3:+72382303 | None:intergenic |
| AAATTTAGGTTGGTTGTTGA+AGG | 0.444026 | 1_3:-72381494 | Msa0139110:intron |
| CACCGATGGCAGCGTATTTG+AGG | 0.444864 | 1_3:+72386689 | None:intergenic |
| AGGAGGAGGTGGAGGAGGAG+TGG | 0.447975 | 1_3:+72386747 | None:intergenic |
| CAGGCGTTTCAAATTGCATA+AGG | 0.448133 | 1_3:-72382043 | Msa0139110:CDS |
| GGAGTAGCGGAAGAGGGAGG+AGG | 0.449116 | 1_3:+72386784 | None:intergenic |
| AGGAGGTGGAGGAGGAGTGG+CGG | 0.449841 | 1_3:+72386750 | None:intergenic |
| TGGATCCTAAGCACTGCATT+AGG | 0.453716 | 1_3:-72382743 | Msa0139110:CDS |
| ATTCCAGCGGTTAGGGGAAG+CGG | 0.455791 | 1_3:+72386714 | None:intergenic |
| GGTGGAGGAGTAGCGGAAGA+GGG | 0.456550 | 1_3:+72386778 | None:intergenic |
| TTATATCAGCCGGGCTAGTA+CGG | 0.463174 | 1_3:+72382115 | None:intergenic |
| GGGAGGAGGTGGAGAAGGAG+TGG | 0.463546 | 1_3:+72386798 | None:intergenic |
| AGTAGCAGCAGGAGCGGCGG+TGG | 0.464184 | 1_3:+72386843 | None:intergenic |
| GGTGGAGAAGGAGTGGCAGA+AGG | 0.464320 | 1_3:+72386805 | None:intergenic |
| CCATCCTGATACTTAGTAGC+AGG | 0.468851 | 1_3:+72382705 | None:intergenic |
| GGAGTGGCAGAAGGAGGAGG+AGG | 0.468973 | 1_3:+72386814 | None:intergenic |
| AGGAGGTTGAGGAGTGACTT+TGG | 0.474619 | 1_3:+72386879 | None:intergenic |
| TTATGCTTGCAGAAATTTCA+AGG | 0.477158 | 1_3:-72384919 | Msa0139110:intron |
| GGAGAAGGAGTGGCAGAAGG+AGG | 0.479566 | 1_3:+72386808 | None:intergenic |
| CCAGAGGCGTCTCTGTCCTC+CGG | 0.480081 | 1_3:+72381342 | None:intergenic |
| GGCGTAACCGGCTACGGCGG+TGG | 0.481279 | 1_3:+72386654 | None:intergenic |
| AGCACTGGTCTTATATCAGC+CGG | 0.483378 | 1_3:+72382105 | None:intergenic |
| CTTCACTTTCATTTCAAACT+GGG | 0.483745 | 1_3:+72380949 | None:intergenic |
| GGAAGGAGCTTGTCTGTGTA+TGG | 0.485204 | 1_3:+72383279 | None:intergenic |
| CACTCGGAATATCACATCCT+TGG | 0.486830 | 1_3:+72382073 | None:intergenic |
| TTAATAGGGACACAGTTCTC+AGG | 0.487617 | 1_3:+72382317 | None:intergenic |
| CTAAGCACTGCATTAGGTAC+AGG | 0.494989 | 1_3:-72382737 | Msa0139110:CDS |
| TTGCATTTGCAAAATGAAGT+TGG | 0.498368 | 1_3:-72380920 | Msa0139110:three_prime_UTR |
| TTGTAGACCCTGTTATAGAA+AGG | 0.499591 | 1_3:-72382767 | Msa0139110:CDS |
| GCAAAAGTTATGTACTTAAG+TGG | 0.505360 | 1_3:-72382365 | Msa0139110:CDS |
| GCTTGGCTTGGTGGAGACGC+CGG | 0.505360 | 1_3:+72387034 | None:intergenic |
| TTCAGTATTGTTACTTCCAG+AGG | 0.505530 | 1_3:+72381326 | None:intergenic |
| TAAAGCTCTACTGCTTTAGC+AGG | 0.507689 | 1_3:+72383460 | None:intergenic |
| AAAGCTTAACAGAGTTGATC+CGG | 0.510006 | 1_3:-72387053 | None:intergenic |
| AGACCCTGTTATAGAAAGGC+TGG | 0.510757 | 1_3:-72382763 | Msa0139110:CDS |
| TTCCAAGAAGGCATCAACTC+CGG | 0.511667 | 1_3:+72382937 | None:intergenic |
| CCTTGGTAAGACTGCAGCAC+TGG | 0.513048 | 1_3:+72382090 | None:intergenic |
| GGAGGAGTAGCGGAAGAGGG+AGG | 0.513402 | 1_3:+72386781 | None:intergenic |
| TATATCAGCCGGGCTAGTAC+GGG | 0.517337 | 1_3:+72382116 | None:intergenic |
| TCTTTATCAGTCTGCACCCA+TGG | 0.518730 | 1_3:+72382293 | None:intergenic |
| GTAATGTGCAGCTTATAGTT+CGG | 0.523902 | 1_3:-72386490 | Msa0139110:intron |
| CCGGAGGACAGAGACGCCTC+TGG | 0.524054 | 1_3:-72381342 | Msa0139110:CDS |
| TTATAGTTCGGACGAAATTG+AGG | 0.524378 | 1_3:-72386478 | Msa0139110:CDS |
| TCCAAGAAGGCATCAACTCC+GGG | 0.525377 | 1_3:+72382938 | None:intergenic |
| GTAGCCGGTTACGCCTCTTA+CGG | 0.529718 | 1_3:-72386646 | Msa0139110:intron |
| TGAATGAAATGAAATGAAAG+AGG | 0.529892 | 1_3:+72386995 | None:intergenic |
| GGACACAGTTCTCAGGTTGT+AGG | 0.531104 | 1_3:+72382324 | None:intergenic |
| TAAAGATGATACAGCTCTTG+TGG | 0.533851 | 1_3:-72382276 | Msa0139110:CDS |
| CTGTACCTAATGCAGTGCTT+AGG | 0.536001 | 1_3:+72382738 | None:intergenic |
| TCGAGAGAAGTAGCTCCATC+AGG | 0.536228 | 1_3:+72386414 | None:intergenic |
| GGAGGTGAATGAGTAGCAGC+AGG | 0.536311 | 1_3:+72386832 | None:intergenic |
| AGCTTTATTTGGATGCAAGA+AGG | 0.537430 | 1_3:-72383444 | Msa0139110:CDS |
| ATATTCCGAGTGAATTCCTC+AGG | 0.538760 | 1_3:-72382062 | Msa0139110:CDS |
| GGAGTGGCGGAAGAAGGTGG+AGG | 0.539928 | 1_3:+72386763 | None:intergenic |
| GTTTATTGAAGAACACGTTA+GGG | 0.542013 | 1_3:-72383422 | Msa0139110:intron |
| GTATACTCAACTGCAGTGAC+AGG | 0.543024 | 1_3:-72384892 | Msa0139110:intron |
| CTTGCAGAAATTTCAAGGGA+TGG | 0.544133 | 1_3:-72384914 | Msa0139110:intron |
| GAAATGAAAGAGGTTCAGGT+AGG | 0.550193 | 1_3:+72387005 | None:intergenic |
| ACCGGAACCACCGCCGTAGC+CGG | 0.551106 | 1_3:-72386661 | Msa0139110:CDS |
| TGGTTCAAGACTCTAGTTCA+GGG | 0.553194 | 1_3:+72381165 | None:intergenic |
| CCACCGCTTCCCCTAACCGC+TGG | 0.553504 | 1_3:-72386717 | Msa0139110:CDS |
| TATGCTTGCAGAAATTTCAA+GGG | 0.560032 | 1_3:-72384918 | Msa0139110:intron |
| GTGACTTTGGCGAAGCGGAA+TGG | 0.560847 | 1_3:+72386892 | None:intergenic |
| GTAGGCAACTTTCTAAAGCA+TGG | 0.562469 | 1_3:+72382342 | None:intergenic |
| CCTGCTACTAAGTATCAGGA+TGG | 0.566998 | 1_3:-72382705 | Msa0139110:CDS |
| CTGTGTCCCTATTAAGCCAT+GGG | 0.571381 | 1_3:-72382309 | Msa0139110:CDS |
| TTCCTCAAATACGCTGCCAT+CGG | 0.575985 | 1_3:-72386691 | Msa0139110:CDS |
| TGAATGAGTAGCAGCAGGAG+CGG | 0.576769 | 1_3:+72386837 | None:intergenic |
| ATCAGGTGGAGTGTACTTAG+CGG | 0.577775 | 1_3:+72386431 | None:intergenic |
| GCTAAGTACACTCCACCTGA+TGG | 0.578725 | 1_3:-72386429 | Msa0139110:CDS |
| AGTTATTGCCCGTACTAGCC+CGG | 0.582795 | 1_3:-72382124 | Msa0139110:CDS |
| TTTGAAATGAAAGTGAAGAG+TGG | 0.583317 | 1_3:-72380944 | Msa0139110:three_prime_UTR |
| AAATGAAAGAGGTTCAGGTA+GGG | 0.586182 | 1_3:+72387006 | None:intergenic |
| ATTGATTCACTACATTTGGA+CGG | 0.591226 | 1_3:-72383199 | Msa0139110:intron |
| GAGGAATGCACTTACACTCA+AGG | 0.594742 | 1_3:+72382240 | None:intergenic |
| GTAAGAGGCGTAACCGGCTA+CGG | 0.595627 | 1_3:+72386648 | None:intergenic |
| ATGTGAAGCGAGATACAAGC+TGG | 0.600307 | 1_3:-72382976 | Msa0139110:intron |
| GGAAGAAGGTGGAGGAGTAG+CGG | 0.600482 | 1_3:+72386771 | None:intergenic |
| ACTGTGTCCCTATTAAGCCA+TGG | 0.604101 | 1_3:-72382310 | Msa0139110:CDS |
| TACCGACAACAGAATTATGT+AGG | 0.612471 | 1_3:+72381131 | None:intergenic |
| CGACGGAGAAGAATCGAGAT+CGG | 0.613375 | 1_3:+72386935 | None:intergenic |
| TTGAAGCCACTGCAAAATCG+AGG | 0.614160 | 1_3:-72381230 | Msa0139110:three_prime_UTR |
| GGTTCCGGTTAAGGCACCGA+TGG | 0.615001 | 1_3:+72386675 | None:intergenic |
| CCTGAGGAAGCAAATCTGGA+AGG | 0.622399 | 1_3:+72383262 | None:intergenic |
| ATGCACTTACACTCAAGGAA+TGG | 0.623566 | 1_3:+72382245 | None:intergenic |
| CGATGACGATGATGCTGCGA+CGG | 0.623580 | 1_3:+72386918 | None:intergenic |
| GTGGATGAGAAACATGGAGG+AGG | 0.623914 | 1_3:+72386862 | None:intergenic |
| CTGAGCTAGATGTTCCAAGA+AGG | 0.625883 | 1_3:+72382925 | None:intergenic |
| AGAGAAGTAGCTCCATCAGG+TGG | 0.626174 | 1_3:+72386417 | None:intergenic |
| GCACTGGTCTTATATCAGCC+GGG | 0.635398 | 1_3:+72382106 | None:intergenic |
| GAGGAGTGACTTTGGCGAAG+CGG | 0.636601 | 1_3:+72386887 | None:intergenic |
| ATGAGTAGCAGCAGGAGCGG+CGG | 0.640320 | 1_3:+72386840 | None:intergenic |
| GCGGCGGTGGATGAGAAACA+TGG | 0.643040 | 1_3:+72386856 | None:intergenic |
| CCAGCGGTTAGGGGAAGCGG+TGG | 0.643133 | 1_3:+72386717 | None:intergenic |
| CTGCTACTAAGTATCAGGAT+GGG | 0.644510 | 1_3:-72382704 | Msa0139110:CDS |
| GTGAACACATGTTGCTCCTG+AGG | 0.649088 | 1_3:+72383246 | None:intergenic |
| GAGGAAATTCCAGCGGTTAG+GGG | 0.651443 | 1_3:+72386708 | None:intergenic |
| AAACGCCTGAGGAATTCACT+CGG | 0.654658 | 1_3:+72382057 | None:intergenic |
| GATCCAGCCTTTCTATAACA+GGG | 0.661553 | 1_3:+72382760 | None:intergenic |
| CGTATTTGAGGAAATTCCAG+CGG | 0.669655 | 1_3:+72386701 | None:intergenic |
| CCAGTGCTGCAGTCTTACCA+AGG | 0.672246 | 1_3:-72382090 | Msa0139110:CDS |
| TATGCAATTTGAAACGCCTG+AGG | 0.679211 | 1_3:+72382046 | None:intergenic |
| AAATGATGCAGGAAAACCGG+AGG | 0.687211 | 1_3:-72381358 | Msa0139110:intron |
| AGAGGCGTAACCGGCTACGG+CGG | 0.690683 | 1_3:+72386651 | None:intergenic |
| GCGGTGGATGAGAAACATGG+AGG | 0.755481 | 1_3:+72386859 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATTATATATTTAA+AGG | + | chr1_3:72383025-72383044 | None:intergenic | 0.0% |
| !!! | TTTTATGATATGATAATTAA+CGG | - | chr1_3:72383628-72383647 | Msa0139110:intron | 10.0% |
| !! | TTATTATAATAATATTGACA+CGG | - | chr1_3:72384240-72384259 | Msa0139110:intron | 10.0% |
| !!! | TTAACTGATTTAAAAAATTT+GGG | - | chr1_3:72385841-72385860 | Msa0139110:intron | 10.0% |
| !!! | AATATATTTGATTTCTAAAA+TGG | - | chr1_3:72386944-72386963 | Msa0139110:CDS | 10.0% |
| !! | TAACATATTAAAATGACTAA+AGG | + | chr1_3:72382353-72382372 | None:intergenic | 15.0% |
| !!! | ATTTTTACTGTTTTGTTTAT+TGG | - | chr1_3:72382757-72382776 | Msa0139110:CDS | 15.0% |
| !! | TCATAGAAATATCTATTATA+CGG | - | chr1_3:72383865-72383884 | Msa0139110:intron | 15.0% |
| !! | TATTATAATAATATTGACAC+GGG | - | chr1_3:72384241-72384260 | Msa0139110:intron | 15.0% |
| !! | AAATATCAAATATCTTTGAA+TGG | - | chr1_3:72384697-72384716 | Msa0139110:intron | 15.0% |
| !! | AATATCAAATATCTTTGAAT+GGG | - | chr1_3:72384698-72384717 | Msa0139110:intron | 15.0% |
| !! | ATTAATGCTATGAAAATTTA+TGG | - | chr1_3:72384731-72384750 | Msa0139110:intron | 15.0% |
| !! | AGTAAAAATCAACATTATAT+AGG | + | chr1_3:72384828-72384847 | None:intergenic | 15.0% |
| !!! | TGTTGATTTTTACTTTTATT+TGG | - | chr1_3:72384834-72384853 | Msa0139110:intron | 15.0% |
| !!! | CTTAACTGATTTAAAAAATT+TGG | - | chr1_3:72385840-72385859 | Msa0139110:intron | 15.0% |
| !! | CTAAATTTATATCATATGTA+AGG | + | chr1_3:72386328-72386347 | None:intergenic | 15.0% |
| !! | CTTACATATGATATAAATTT+AGG | - | chr1_3:72386326-72386345 | Msa0139110:intron | 15.0% |
| !!! | AAATCTACATTTTATCTATT+TGG | + | chr1_3:72386640-72386659 | None:intergenic | 15.0% |
| !!! | AGTAATAAAACCTAAATTTT+AGG | - | chr1_3:72386994-72387013 | Msa0139110:CDS | 15.0% |
| !! | TATTTATTTGTTTGATGAAG+TGG | - | chr1_3:72382058-72382077 | Msa0139110:CDS | 20.0% |
| !!! | TTTTGTTTCTTGTTTTTAGT+CGG | + | chr1_3:72382602-72382621 | None:intergenic | 20.0% |
| !! | TAACATATTAAACTGACTAA+AGG | + | chr1_3:72382858-72382877 | None:intergenic | 20.0% |
| !! | AGTCAGTTTAATATGTTAAT+AGG | - | chr1_3:72382860-72382879 | Msa0139110:intron | 20.0% |
| !! | TATCTTATATCAGTATTGTT+CGG | - | chr1_3:72382997-72383016 | Msa0139110:intron | 20.0% |
| !! | TAATCATATCAATATGTAGT+AGG | - | chr1_3:72383554-72383573 | Msa0139110:intron | 20.0% |
| !! | AATCATATCAATATGTAGTA+GGG | - | chr1_3:72383555-72383574 | Msa0139110:intron | 20.0% |
| !! | ATTATAATAATATTGACACG+GGG | - | chr1_3:72384242-72384261 | Msa0139110:intron | 20.0% |
| !!! | ATATTTTTATATCCCCAAAA+CGG | + | chr1_3:72384683-72384702 | None:intergenic | 20.0% |
| !!! | AATTACATTTTATAGTTCAC+AGG | - | chr1_3:72386008-72386027 | Msa0139110:intron | 20.0% |
| !! | TCAAAAATGAGATACAAAAA+TGG | - | chr1_3:72386166-72386185 | Msa0139110:intron | 20.0% |
| !! | CAAAAATGAGATACAAAAAT+GGG | - | chr1_3:72386167-72386186 | Msa0139110:intron | 20.0% |
| !! | AAAAATGAGATACAAAAATG+GGG | - | chr1_3:72386168-72386187 | Msa0139110:intron | 20.0% |
| !! | AAATCCAGATATTAAATGAT+TGG | + | chr1_3:72386210-72386229 | None:intergenic | 20.0% |
| !! | CATATGATATAAATTTAGGT+TGG | - | chr1_3:72386330-72386349 | Msa0139110:intron | 20.0% |
| !!! | CTAAACAGGAATTTTTTTTT+AGG | - | chr1_3:72386391-72386410 | Msa0139110:intron | 20.0% |
| !! | ATAGAACACTAATTTAGATA+TGG | - | chr1_3:72386971-72386990 | Msa0139110:CDS | 20.0% |
| !! | GCAATAAAATCCTAAAATTT+AGG | + | chr1_3:72387007-72387026 | None:intergenic | 20.0% |
| ! | TGAATGAAATGAAATGAAAG+AGG | + | chr1_3:72380842-72380861 | None:intergenic | 25.0% |
| !!! | CGAATTTTTGTTTGATGAAA+TGG | - | chr1_3:72381560-72381579 | Msa0139110:intron | 25.0% |
| !! | ATTTTCTTACATTACTACCA+GGG | - | chr1_3:72381661-72381680 | Msa0139110:intron | 25.0% |
| ! | CCAATAAATTGACAAAATGT+GGG | + | chr1_3:72382141-72382160 | None:intergenic | 25.0% |
| ! | TCCAATAAATTGACAAAATG+TGG | + | chr1_3:72382142-72382161 | None:intergenic | 25.0% |
| !! | ACATTTTGTCAATTTATTGG+AGG | - | chr1_3:72382141-72382160 | Msa0139110:intron | 25.0% |
| ! | GACTAAAAACAAGAAACAAA+AGG | - | chr1_3:72382601-72382620 | Msa0139110:intron | 25.0% |
| ! | ATATCAACCTACTAATGTTA+AGG | + | chr1_3:72382886-72382905 | None:intergenic | 25.0% |
| ! | CAATACTGATATAAGATAAG+TGG | + | chr1_3:72382995-72383014 | None:intergenic | 25.0% |
| ! | AAATCACAAAAGAGATTTAG+TGG | + | chr1_3:72383478-72383497 | None:intergenic | 25.0% |
| ! | ATCATATCAATATGTAGTAG+GGG | - | chr1_3:72383556-72383575 | Msa0139110:intron | 25.0% |
| ! | TTGGTTTAGTTGTATTGTTA+AGG | - | chr1_3:72383944-72383963 | Msa0139110:intron | 25.0% |
| ! | TTTAGTTGTATTGTTAAGGA+GGG | - | chr1_3:72383948-72383967 | Msa0139110:intron | 25.0% |
| !!! | TGCCTTTTAAAATCATTAGA+CGG | - | chr1_3:72384112-72384131 | Msa0139110:intron | 25.0% |
| ! | TCTTGTAGAAGAATCAAATT+TGG | + | chr1_3:72384277-72384296 | None:intergenic | 25.0% |
| ! | TACACATGTACAAACTAATT+TGG | + | chr1_3:72384303-72384322 | None:intergenic | 25.0% |
| !! | TGCTTTTACTTCTCTAATTT+TGG | - | chr1_3:72384443-72384462 | Msa0139110:intron | 25.0% |
| ! | ATTAAAAGTTTAACACAAGG+TGG | + | chr1_3:72384500-72384519 | None:intergenic | 25.0% |
| ! | AGCATTAAAAGTTTAACACA+AGG | + | chr1_3:72384503-72384522 | None:intergenic | 25.0% |
| !! | GTGTTAAACTTTTAATGCTT+TGG | - | chr1_3:72384504-72384523 | Msa0139110:intron | 25.0% |
| !!! | AAACATTGATTCACTACATT+TGG | - | chr1_3:72384631-72384650 | Msa0139110:intron | 25.0% |
| ! | CAGTATCAAAATAAAATGAC+AGG | + | chr1_3:72385355-72385374 | None:intergenic | 25.0% |
| ! | TCATTTAAATACATCTCAAG+AGG | + | chr1_3:72385616-72385635 | None:intergenic | 25.0% |
| ! | ATAACAAAAGAACAAAACCT+TGG | + | chr1_3:72385880-72385899 | None:intergenic | 25.0% |
| ! | AAATGTAATTAACCAGACAA+GGG | + | chr1_3:72385998-72386017 | None:intergenic | 25.0% |
| ! | AAAATGTAATTAACCAGACA+AGG | + | chr1_3:72385999-72386018 | None:intergenic | 25.0% |
| !!! | TGCATATTTTGGCTTTTTTT+CGG | - | chr1_3:72386141-72386160 | Msa0139110:intron | 25.0% |
| ! | TATCATATGTAAGGTGAATT+AGG | + | chr1_3:72386319-72386338 | None:intergenic | 25.0% |
| AAATGAAATGAAAGAGGTTC+AGG | + | chr1_3:72380836-72380855 | None:intergenic | 30.0% | |
| ! | TTTCTTGAATCGTATTGATC+TGG | - | chr1_3:72381270-72381289 | Msa0139110:exon | 30.0% |
| ! | CATTTTCTTACATTACTACC+AGG | - | chr1_3:72381660-72381679 | Msa0139110:intron | 30.0% |
| AATTATGACAAAACTCAGCA+TGG | - | chr1_3:72381708-72381727 | Msa0139110:intron | 30.0% | |
| ATTCACTGTAATCACATATG+TGG | - | chr1_3:72381933-72381952 | Msa0139110:intron | 30.0% | |
| TTCACTGTAATCACATATGT+GGG | - | chr1_3:72381934-72381953 | Msa0139110:intron | 30.0% | |
| ! | CCCACATTTTGTCAATTTAT+TGG | - | chr1_3:72382138-72382157 | Msa0139110:intron | 30.0% |
| TTGGATGTAACACTTTGATA+TGG | - | chr1_3:72382174-72382193 | Msa0139110:intron | 30.0% | |
| TAATAGACCTCAACATTAGT+AGG | - | chr1_3:72382371-72382390 | Msa0139110:CDS | 30.0% | |
| AAACAAAAGGCCTAAAAACA+GGG | - | chr1_3:72382614-72382633 | Msa0139110:intron | 30.0% | |
| GACTAAAAACAGGAAACAAA+AGG | - | chr1_3:72382644-72382663 | Msa0139110:intron | 30.0% | |
| AAACAAAAGGCCTAAAAACA+GGG | - | chr1_3:72382614-72382633 | Msa0139110:intron | 30.0% | |
| TTAAGTTCATGTTGCATAAG+AGG | + | chr1_3:72382726-72382745 | None:intergenic | 30.0% | |
| ! | GTTTATTGGAATTCCTTTTG+TGG | - | chr1_3:72382771-72382790 | Msa0139110:CDS | 30.0% |
| TAATAGGCCTTAACATTAGT+AGG | - | chr1_3:72382876-72382895 | Msa0139110:intron | 30.0% | |
| TTATGCTTGCAGAAATTTCA+AGG | - | chr1_3:72382915-72382934 | Msa0139110:CDS | 30.0% | |
| TATGCTTGCAGAAATTTCAA+GGG | - | chr1_3:72382916-72382935 | Msa0139110:CDS | 30.0% | |
| TGTAAAAGTGATCCTTCTTT+CGG | + | chr1_3:72383355-72383374 | None:intergenic | 30.0% | |
| AAGTACAAACATGAATCGAA+TGG | - | chr1_3:72383443-72383462 | Msa0139110:CDS | 30.0% | |
| ! | GTGATTTTGTGTAGTTATCT+TGG | - | chr1_3:72383491-72383510 | Msa0139110:intron | 30.0% |
| GTTTAGTTGTATTGTTAAGG+AGG | - | chr1_3:72383947-72383966 | Msa0139110:intron | 30.0% | |
| ACAAATCCAAAAATCAAACG+TGG | - | chr1_3:72384023-72384042 | Msa0139110:intron | 30.0% | |
| !! | ATTATGCCACGTTTGATTTT+TGG | + | chr1_3:72384032-72384051 | None:intergenic | 30.0% |
| CCAATTTAATTCTAATGCAC+CGG | - | chr1_3:72384070-72384089 | Msa0139110:intron | 30.0% | |
| AGTTTCCTCAAAATCAAAAC+CGG | + | chr1_3:72384092-72384111 | None:intergenic | 30.0% | |
| ! | TGCCGTCTAATGATTTTAAA+AGG | + | chr1_3:72384117-72384136 | None:intergenic | 30.0% |
| ! | ATCATTAGACGGCATATTTT+AGG | - | chr1_3:72384123-72384142 | Msa0139110:intron | 30.0% |
| AACGAAATCTCCTAAAAGTA+TGG | - | chr1_3:72384179-72384198 | Msa0139110:intron | 30.0% | |
| ! | ATGTGATATGCCATACTTTT+AGG | + | chr1_3:72384192-72384211 | None:intergenic | 30.0% |
| !! | TAAAGCAGTAGAGCTTTATT+TGG | - | chr1_3:72384379-72384398 | Msa0139110:intron | 30.0% |
| GTTTATTGAAGAACACGTTA+GGG | - | chr1_3:72384412-72384431 | Msa0139110:intron | 30.0% | |
| GTGGAAAAACATGAAAAGAA+AGG | + | chr1_3:72384481-72384500 | None:intergenic | 30.0% | |
| ! | ATTGATTCACTACATTTGGA+CGG | - | chr1_3:72384635-72384654 | Msa0139110:intron | 30.0% |
| GTATACAGATGAACAGAATA+TGG | - | chr1_3:72384949-72384968 | Msa0139110:intron | 30.0% | |
| ! | TTGTTTCTCTGTATTCTGAA+TGG | - | chr1_3:72384982-72385001 | Msa0139110:intron | 30.0% |
| ATGTCTTTAGTATGTTCTTC+AGG | + | chr1_3:72385307-72385326 | None:intergenic | 30.0% | |
| AAAATGACAGGAAAAAGCAA+AGG | + | chr1_3:72385343-72385362 | None:intergenic | 30.0% | |
| !! | ATTTTGATACTGCACAAATG+TGG | - | chr1_3:72385363-72385382 | Msa0139110:intron | 30.0% |
| AGGATCTTTCAAAACTAAAC+AGG | - | chr1_3:72385440-72385459 | Msa0139110:intron | 30.0% | |
| ! | CTTAAGTACATAACTTTTGC+AGG | + | chr1_3:72385469-72385488 | None:intergenic | 30.0% |
| GCAAAAGTTATGTACTTAAG+TGG | - | chr1_3:72385469-72385488 | Msa0139110:intron | 30.0% | |
| CAATAACTGCATATGGATAA+TGG | + | chr1_3:72385698-72385717 | None:intergenic | 30.0% | |
| ! | TTTTCCATTACAAATCTGTG+AGG | - | chr1_3:72386042-72386061 | Msa0139110:intron | 30.0% |
| TTGCTTCTATTATTGCTGTA+TGG | - | chr1_3:72386066-72386085 | Msa0139110:intron | 30.0% | |
| TTGATGCAAAAGTTAAGTAG+AGG | - | chr1_3:72386118-72386137 | Msa0139110:intron | 30.0% | |
| !! | TTAAGTAGAGGTGCATATTT+TGG | - | chr1_3:72386130-72386149 | Msa0139110:intron | 30.0% |
| ! | ACGTGAAGTTAATTTTCTTG+TGG | - | chr1_3:72386257-72386276 | Msa0139110:intron | 30.0% |
| !! | AAATTTAGGTTGGTTGTTGA+AGG | - | chr1_3:72386340-72386359 | Msa0139110:intron | 30.0% |
| ! | ACAAATAGTTGATGCTAAAC+AGG | - | chr1_3:72386377-72386396 | Msa0139110:intron | 30.0% |
| AAACACCAGAGTAAAAATGT+TGG | + | chr1_3:72386453-72386472 | None:intergenic | 30.0% | |
| !!! | AGTCTTGAACCATCATTTTT+TGG | - | chr1_3:72386680-72386699 | Msa0139110:CDS | 30.0% |
| TTATGTAGGCCAAAAAATGA+TGG | + | chr1_3:72386692-72386711 | None:intergenic | 30.0% | |
| GAATGCTTAAATTTCCGTTA+AGG | - | chr1_3:72386783-72386802 | Msa0139110:CDS | 30.0% | |
| ! | ACTCTTGTTCAAGTTTCAAT+TGG | - | chr1_3:72386832-72386851 | Msa0139110:CDS | 30.0% |
| CTTCACTTTCATTTCAAACT+GGG | + | chr1_3:72386888-72386907 | None:intergenic | 30.0% | |
| TCTTCACTTTCATTTCAAAC+TGG | + | chr1_3:72386889-72386908 | None:intergenic | 30.0% | |
| ! | TTTGAAATGAAAGTGAAGAG+TGG | - | chr1_3:72386890-72386909 | Msa0139110:CDS | 30.0% |
| TTGCATTTGCAAAATGAAGT+TGG | - | chr1_3:72386914-72386933 | Msa0139110:CDS | 30.0% | |
| AAATGAAAGAGGTTCAGGTA+GGG | + | chr1_3:72380831-72380850 | None:intergenic | 35.0% | |
| ! | TTGGAGAGACATTGTTGTTA+TGG | + | chr1_3:72380874-72380893 | None:intergenic | 35.0% |
| AGAAAAATACGAACCGTAAG+AGG | + | chr1_3:72381204-72381223 | None:intergenic | 35.0% | |
| CAGTGAAAACAGAAATGAAG+AGG | + | chr1_3:72381231-72381250 | None:intergenic | 35.0% | |
| GTAATGTGCAGCTTATAGTT+CGG | - | chr1_3:72381344-72381363 | Msa0139110:CDS | 35.0% | |
| TTATAGTTCGGACGAAATTG+AGG | - | chr1_3:72381356-72381375 | Msa0139110:intron | 35.0% | |
| TTATAATCTATCACACTCCC+TGG | + | chr1_3:72381681-72381700 | None:intergenic | 35.0% | |
| TGTTCATGTTTGTGCTTCAT+AGG | + | chr1_3:72381863-72381882 | None:intergenic | 35.0% | |
| ACAAACATGAACATCGAACA+CGG | - | chr1_3:72381870-72381889 | Msa0139110:intron | 35.0% | |
| TGAGTTGCAAAATTTGTGTG+TGG | - | chr1_3:72382102-72382121 | Msa0139110:CDS | 35.0% | |
| TTGTCAATTTATTGGAGGTG+TGG | - | chr1_3:72382146-72382165 | Msa0139110:intron | 35.0% | |
| GATGTAACACTTTGATATGG+TGG | - | chr1_3:72382177-72382196 | Msa0139110:intron | 35.0% | |
| TCTGCATTGTTTGAATGTGA+TGG | - | chr1_3:72382315-72382334 | Msa0139110:CDS | 35.0% | |
| ATGTCAACCTACTAATGTTG+AGG | + | chr1_3:72382381-72382400 | None:intergenic | 35.0% | |
| AAACCACATCACCAACATAA+GGG | - | chr1_3:72382571-72382590 | Msa0139110:intron | 35.0% | |
| GAAACAAAAGGCCTAAAAAC+AGG | - | chr1_3:72382613-72382632 | Msa0139110:intron | 35.0% | |
| GAAACAAAAGGCCTAAAAAC+AGG | - | chr1_3:72382613-72382632 | Msa0139110:intron | 35.0% | |
| !! | GTATGTTGTTCCCTGTTTTT+AGG | + | chr1_3:72382670-72382689 | None:intergenic | 35.0% |
| ! | ACAGCACTATTGCTTAGTTT+TGG | - | chr1_3:72382794-72382813 | Msa0139110:intron | 35.0% |
| TGTTGCGTATACATGAACAT+TGG | - | chr1_3:72383087-72383106 | Msa0139110:intron | 35.0% | |
| TGGAACTAAATGGCATATGA+TGG | + | chr1_3:72383114-72383133 | None:intergenic | 35.0% | |
| CATACCCTTGACCTAAATAA+GGG | - | chr1_3:72383132-72383151 | Msa0139110:intron | 35.0% | |
| ! | ACTTCCCTTATTTAGGTCAA+GGG | + | chr1_3:72383139-72383158 | None:intergenic | 35.0% |
| TAAAAGTGATCCTTCTTTCG+GGG | + | chr1_3:72383353-72383372 | None:intergenic | 35.0% | |
| GTAAAAGTGATCCTTCTTTC+GGG | + | chr1_3:72383354-72383373 | None:intergenic | 35.0% | |
| TTGTGTAGTTATCTTGGCTA+TGG | - | chr1_3:72383497-72383516 | Msa0139110:intron | 35.0% | |
| ATTACCAGTGTTGTCAATTG+TGG | + | chr1_3:72383810-72383829 | None:intergenic | 35.0% | |
| ! | TGTACAGAGTACAGTTCTTT+TGG | + | chr1_3:72383844-72383863 | None:intergenic | 35.0% |
| TAACTAGCAAAGAAGTCAAG+TGG | - | chr1_3:72383918-72383937 | Msa0139110:intron | 35.0% | |
| AACTAGCAAAGAAGTCAAGT+GGG | - | chr1_3:72383919-72383938 | Msa0139110:intron | 35.0% | |
| ATCAAACGTGGCATAATTCT+TGG | - | chr1_3:72384035-72384054 | Msa0139110:intron | 35.0% | |
| TCAAACGTGGCATAATTCTT+GGG | - | chr1_3:72384036-72384055 | Msa0139110:intron | 35.0% | |
| CCGGTGCATTAGAATTAAAT+TGG | + | chr1_3:72384073-72384092 | None:intergenic | 35.0% | |
| GGCACTAAAATATTACATGC+AGG | + | chr1_3:72384356-72384375 | None:intergenic | 35.0% | |
| !! | AGCTTTATTTGGATGCAAGA+AGG | - | chr1_3:72384390-72384409 | Msa0139110:intron | 35.0% |
| GGTTTATTGAAGAACACGTT+AGG | - | chr1_3:72384411-72384430 | Msa0139110:intron | 35.0% | |
| !! | AGCTCAGTTCTTTGAAATAG+TGG | - | chr1_3:72384925-72384944 | Msa0139110:intron | 35.0% |
| TTGTAGACCCTGTTATAGAA+AGG | - | chr1_3:72385067-72385086 | Msa0139110:intron | 35.0% | |
| TAAAGATGATACAGCTCTTG+TGG | - | chr1_3:72385558-72385577 | Msa0139110:intron | 35.0% | |
| CAATCCTCACAGATTTGTAA+TGG | + | chr1_3:72386049-72386068 | None:intergenic | 35.0% | |
| CTTCTATTATTGCTGTATGG+TGG | - | chr1_3:72386069-72386088 | Msa0139110:intron | 35.0% | |
| AGCGCCAATCATTTAATATC+TGG | - | chr1_3:72386203-72386222 | Msa0139110:intron | 35.0% | |
| ! | TTCAGTATTGTTACTTCCAG+AGG | + | chr1_3:72386511-72386530 | None:intergenic | 35.0% |
| TACCGACAACAGAATTATGT+AGG | + | chr1_3:72386706-72386725 | None:intergenic | 35.0% | |
| GTAATTTGAGGAGTCCTTAA+CGG | + | chr1_3:72386800-72386819 | None:intergenic | 35.0% | |
| GTGCAAACTTCTGTAATTTG+AGG | + | chr1_3:72386812-72386831 | None:intergenic | 35.0% | |
| GAAATGAAAGAGGTTCAGGT+AGG | + | chr1_3:72380832-72380851 | None:intergenic | 40.0% | |
| AGAATCGAGATCGGAGAATT+TGG | + | chr1_3:72380893-72380912 | None:intergenic | 40.0% | |
| CGTATTTGAGGAAATTCCAG+CGG | + | chr1_3:72381136-72381155 | None:intergenic | 40.0% | |
| ! | ATGTCTTCGAACAGAAGTGT+CGG | + | chr1_3:72381606-72381625 | None:intergenic | 40.0% |
| CTAGCGTGAATTGTTGTGTT+TGG | - | chr1_3:72381836-72381855 | Msa0139110:intron | 40.0% | |
| ! | GCACTGACACTTCTAATTGA+AGG | + | chr1_3:72382006-72382025 | None:intergenic | 40.0% |
| ! | TATTGGAGGTGTGGTATCTT+TGG | - | chr1_3:72382155-72382174 | Msa0139110:intron | 40.0% |
| !! | TATGTTGGTGATGTGGTTTG+TGG | + | chr1_3:72382570-72382589 | None:intergenic | 40.0% |
| CAAACCACATCACCAACATA+AGG | - | chr1_3:72382570-72382589 | Msa0139110:intron | 40.0% | |
| !! | GTCAGTTGTTCCCTGTTTTT+AGG | + | chr1_3:72382627-72382646 | None:intergenic | 40.0% |
| GGGAACAACTGACTAAAAAC+AGG | - | chr1_3:72382634-72382653 | Msa0139110:intron | 40.0% | |
| !!! | CTTAGTTTTGGAGCTTTGCA+TGG | - | chr1_3:72382806-72382825 | Msa0139110:intron | 40.0% |
| !!! | TTTTGGAGCTTTGCATGGTT+AGG | - | chr1_3:72382811-72382830 | Msa0139110:intron | 40.0% |
| CTTGCAGAAATTTCAAGGGA+TGG | - | chr1_3:72382920-72382939 | Msa0139110:CDS | 40.0% | |
| TGGCGTACAGAATAAAGCTA+GGG | + | chr1_3:72382975-72382994 | None:intergenic | 40.0% | |
| ! | GTCAAGGGTATGGAACTAAA+TGG | + | chr1_3:72383124-72383143 | None:intergenic | 40.0% |
| ! | CCTTATTTAGGTCAAGGGTA+TGG | + | chr1_3:72383134-72383153 | None:intergenic | 40.0% |
| CCATACCCTTGACCTAAATA+AGG | - | chr1_3:72383131-72383150 | Msa0139110:intron | 40.0% | |
| ! | GACTTCCCTTATTTAGGTCA+AGG | + | chr1_3:72383140-72383159 | None:intergenic | 40.0% |
| ! | CCTAAGGACTTCCCTTATTT+AGG | + | chr1_3:72383146-72383165 | None:intergenic | 40.0% |
| CCTAAATAAGGGAAGTCCTT+AGG | - | chr1_3:72383143-72383162 | Msa0139110:intron | 40.0% | |
| ATGTTTCTCCAAGTTGCCTA+AGG | + | chr1_3:72383162-72383181 | None:intergenic | 40.0% | |
| GTGGGAAAGTTAAAGTGAGA+GGG | - | chr1_3:72383217-72383236 | Msa0139110:CDS | 40.0% | |
| TGTTCCTGCTTTGCATGAAA+GGG | - | chr1_3:72383318-72383337 | Msa0139110:intron | 40.0% | |
| CGATTCATGTTTGTACTTGC+AGG | + | chr1_3:72383441-72383460 | None:intergenic | 40.0% | |
| GCAAGCAGCAATTTATCCAT+GGG | + | chr1_3:72383583-72383602 | None:intergenic | 40.0% | |
| TGCAAGCAGCAATTTATCCA+TGG | + | chr1_3:72383584-72383603 | None:intergenic | 40.0% | |
| !! | TGTGGATAGCGGAAATTTGT+GGG | + | chr1_3:72383792-72383811 | None:intergenic | 40.0% |
| !! | TTGTGGATAGCGGAAATTTG+TGG | + | chr1_3:72383793-72383812 | None:intergenic | 40.0% |
| GTGTTGTCAATTGTGGATAG+CGG | + | chr1_3:72383803-72383822 | None:intergenic | 40.0% | |
| CTATCCACAATTGACAACAC+TGG | - | chr1_3:72383803-72383822 | Msa0139110:intron | 40.0% | |
| TCCTCTGTAGCATTTGATCA+GGG | - | chr1_3:72383890-72383909 | Msa0139110:intron | 40.0% | |
| !!! | ATGCACCGGTTTTGATTTTG+AGG | - | chr1_3:72384084-72384103 | Msa0139110:intron | 40.0% |
| TAAAGCTCTACTGCTTTAGC+AGG | + | chr1_3:72384377-72384396 | None:intergenic | 40.0% | |
| ! | TGTATGGTTCTGTATAACCC+TGG | + | chr1_3:72384542-72384561 | None:intergenic | 40.0% |
| !! | TGGCAGACTTTTAAAAGACC+CGG | - | chr1_3:72384878-72384897 | Msa0139110:intron | 40.0% |
| GATCCAGCCTTTCTATAACA+GGG | + | chr1_3:72385077-72385096 | None:intergenic | 40.0% | |
| CTGCTACTAAGTATCAGGAT+GGG | - | chr1_3:72385130-72385149 | Msa0139110:intron | 40.0% | |
| ! | TTTTTCCCTTTGCCTGTCAT+TGG | - | chr1_3:72385416-72385435 | Msa0139110:intron | 40.0% |
| !! | GTAGGCAACTTTCTAAAGCA+TGG | + | chr1_3:72385495-72385514 | None:intergenic | 40.0% |
| TTAATAGGGACACAGTTCTC+AGG | + | chr1_3:72385520-72385539 | None:intergenic | 40.0% | |
| ATGCACTTACACTCAAGGAA+TGG | + | chr1_3:72385592-72385611 | None:intergenic | 40.0% | |
| !! | CTGCATATGGATAATGGAGA+AGG | + | chr1_3:72385692-72385711 | None:intergenic | 40.0% |
| ATATTCCGAGTGAATTCCTC+AGG | - | chr1_3:72385772-72385791 | Msa0139110:intron | 40.0% | |
| ! | TATGCAATTTGAAACGCCTG+AGG | + | chr1_3:72385791-72385810 | None:intergenic | 40.0% |
| CAGGCGTTTCAAATTGCATA+AGG | - | chr1_3:72385791-72385810 | Msa0139110:intron | 40.0% | |
| TGGGAACTATATTGCAACCA+AGG | - | chr1_3:72385860-72385879 | Msa0139110:intron | 40.0% | |
| GTAATTAACCAGACAAGGGT+GGG | + | chr1_3:72385994-72386013 | None:intergenic | 40.0% | |
| TGTAATTAACCAGACAAGGG+TGG | + | chr1_3:72385995-72386014 | None:intergenic | 40.0% | |
| ! | ATTATTGCTGTATGGTGGTG+TGG | - | chr1_3:72386074-72386093 | Msa0139110:intron | 40.0% |
| ! | TTATTGCTGTATGGTGGTGT+GGG | - | chr1_3:72386075-72386094 | Msa0139110:intron | 40.0% |
| TGAATTAGGAGTGACATGGT+GGG | + | chr1_3:72386305-72386324 | None:intergenic | 40.0% | |
| AAGGTGAATTAGGAGTGACA+TGG | + | chr1_3:72386309-72386328 | None:intergenic | 40.0% | |
| ATGTTGGCGGAAATAAGACA+GGG | + | chr1_3:72386437-72386456 | None:intergenic | 40.0% | |
| AATGTTGGCGGAAATAAGAC+AGG | + | chr1_3:72386438-72386457 | None:intergenic | 40.0% | |
| ! | TTCCGCCAACATTTTTACTC+TGG | - | chr1_3:72386445-72386464 | Msa0139110:CDS | 40.0% |
| CACCAGAGTAAAAATGTTGG+CGG | + | chr1_3:72386450-72386469 | None:intergenic | 40.0% | |
| ! | TGGTGTTTTCCAAATGATGC+AGG | - | chr1_3:72386465-72386484 | Msa0139110:CDS | 40.0% |
| TCCAAATGATGCAGGAAAAC+CGG | - | chr1_3:72386473-72386492 | Msa0139110:CDS | 40.0% | |
| ! | TGGTTCAAGACTCTAGTTCA+GGG | + | chr1_3:72386672-72386691 | None:intergenic | 40.0% |
| ! | ATGGTTCAAGACTCTAGTTC+AGG | + | chr1_3:72386673-72386692 | None:intergenic | 40.0% |
| GGCCTACATAATTCTGTTGT+CGG | - | chr1_3:72386701-72386720 | Msa0139110:CDS | 40.0% | |
| ! | AAGAGGTTCAGGTAGGGTTT+TGG | + | chr1_3:72380825-72380844 | None:intergenic | 45.0% |
| TGAGGAAATTCCAGCGGTTA+GGG | + | chr1_3:72381130-72381149 | None:intergenic | 45.0% | |
| TTGAGGAAATTCCAGCGGTT+AGG | + | chr1_3:72381131-72381150 | None:intergenic | 45.0% | |
| TTCCTCAAATACGCTGCCAT+CGG | - | chr1_3:72381143-72381162 | Msa0139110:three_prime_UTR | 45.0% | |
| ATCAGGTGGAGTGTACTTAG+CGG | + | chr1_3:72381406-72381425 | None:intergenic | 45.0% | |
| ! | CACATATGTGGGTGTCATGT+CGG | - | chr1_3:72381945-72381964 | Msa0139110:intron | 45.0% |
| TATTGGACAGTGACACGTGT+TGG | - | chr1_3:72381968-72381987 | Msa0139110:intron | 45.0% | |
| !! | TAGAAGTGTCAGTGCTACAG+AGG | - | chr1_3:72382011-72382030 | Msa0139110:intron | 45.0% |
| TGGCTCTTCGAATACGAACT+GGG | - | chr1_3:72382078-72382097 | Msa0139110:CDS | 45.0% | |
| AACCAAGCATAAGACGAGCA+AGG | - | chr1_3:72382511-72382530 | Msa0139110:intron | 45.0% | |
| !! | GTTCCCTTATGTTGGTGATG+TGG | + | chr1_3:72382577-72382596 | None:intergenic | 45.0% |
| AGTCGGTTGTTCCCTTATGT+TGG | + | chr1_3:72382585-72382604 | None:intergenic | 45.0% | |
| GCAATAGTGCTGTCCACAAA+AGG | + | chr1_3:72382787-72382806 | None:intergenic | 45.0% | |
| GTATACTCAACTGCAGTGAC+AGG | - | chr1_3:72382942-72382961 | Msa0139110:CDS | 45.0% | |
| GGCGTACAGAATAAAGCTAG+GGG | + | chr1_3:72382974-72382993 | None:intergenic | 45.0% | |
| GTGGCGTACAGAATAAAGCT+AGG | + | chr1_3:72382976-72382995 | None:intergenic | 45.0% | |
| AACTTGGAGAAACATGTGCC+TGG | - | chr1_3:72383167-72383186 | Msa0139110:intron | 45.0% | |
| CTTTCCCACCTCTATCCATT+CGG | + | chr1_3:72383206-72383225 | None:intergenic | 45.0% | |
| GGTGGGAAAGTTAAAGTGAG+AGG | - | chr1_3:72383216-72383235 | Msa0139110:CDS | 45.0% | |
| TCCTCTCAGGATAACTGCTT+GGG | + | chr1_3:72383243-72383262 | None:intergenic | 45.0% | |
| TATCCTGAGAGGAGTTGAGA+AGG | - | chr1_3:72383250-72383269 | Msa0139110:CDS | 45.0% | |
| ATCCTGAGAGGAGTTGAGAA+GGG | - | chr1_3:72383251-72383270 | Msa0139110:CDS | 45.0% | |
| AGGAGTTGAGAAGGGAGTTA+GGG | - | chr1_3:72383259-72383278 | Msa0139110:CDS | 45.0% | |
| CTGTTCCTGCTTTGCATGAA+AGG | - | chr1_3:72383317-72383336 | Msa0139110:intron | 45.0% | |
| GTTCCTGCTTTGCATGAAAG+GGG | - | chr1_3:72383319-72383338 | Msa0139110:intron | 45.0% | |
| !! | CTTTGCATGAAAGGGGTACT+TGG | - | chr1_3:72383326-72383345 | Msa0139110:intron | 45.0% |
| ! | AGTCAAGGGCGGTATGTTTT+GGG | + | chr1_3:72383382-72383401 | None:intergenic | 45.0% |
| AATATGTAGTAGGGGTCCCA+TGG | - | chr1_3:72383564-72383583 | Msa0139110:intron | 45.0% | |
| CTGATCAAATGCTACAGAGG+AGG | + | chr1_3:72383891-72383910 | None:intergenic | 45.0% | |
| CTCCTCTGTAGCATTTGATC+AGG | - | chr1_3:72383889-72383908 | Msa0139110:intron | 45.0% | |
| CAAAGAAGTCAAGTGGGCAT+TGG | - | chr1_3:72383925-72383944 | Msa0139110:intron | 45.0% | |
| GTTGTATTGTTAAGGAGGGC+TGG | - | chr1_3:72383952-72383971 | Msa0139110:intron | 45.0% | |
| TATAACCCTGGAAGGAAGCA+TGG | + | chr1_3:72384530-72384549 | None:intergenic | 45.0% | |
| ! | TGGTTCTGTATAACCCTGGA+AGG | + | chr1_3:72384538-72384557 | None:intergenic | 45.0% |
| ! | AACCTCACATGCACCGTTTT+GGG | - | chr1_3:72384667-72384686 | Msa0139110:intron | 45.0% |
| ATGTGAAGCGAGATACAAGC+TGG | - | chr1_3:72384858-72384877 | Msa0139110:intron | 45.0% | |
| !! | TTCCAAGAAGGCATCAACTC+CGG | + | chr1_3:72384900-72384919 | None:intergenic | 45.0% |
| CTGAGCTAGATGTTCCAAGA+AGG | + | chr1_3:72384912-72384931 | None:intergenic | 45.0% | |
| AGACCCTGTTATAGAAAGGC+TGG | - | chr1_3:72385071-72385090 | Msa0139110:intron | 45.0% | |
| GGATCCAGCCTTTCTATAAC+AGG | + | chr1_3:72385078-72385097 | None:intergenic | 45.0% | |
| ! | TGGATCCTAAGCACTGCATT+AGG | - | chr1_3:72385091-72385110 | Msa0139110:intron | 45.0% |
| CTGTACCTAATGCAGTGCTT+AGG | + | chr1_3:72385099-72385118 | None:intergenic | 45.0% | |
| ! | CTAAGCACTGCATTAGGTAC+AGG | - | chr1_3:72385097-72385116 | Msa0139110:intron | 45.0% |
| GAGACCTGCTACTAAGTATC+AGG | - | chr1_3:72385125-72385144 | Msa0139110:intron | 45.0% | |
| CCATCCTGATACTTAGTAGC+AGG | + | chr1_3:72385132-72385151 | None:intergenic | 45.0% | |
| CCTGCTACTAAGTATCAGGA+TGG | - | chr1_3:72385129-72385148 | Msa0139110:intron | 45.0% | |
| TGAAAGATCCTGCCAATGAC+AGG | + | chr1_3:72385431-72385450 | None:intergenic | 45.0% | |
| ACTGTGTCCCTATTAAGCCA+TGG | - | chr1_3:72385524-72385543 | Msa0139110:intron | 45.0% | |
| CTGTGTCCCTATTAAGCCAT+GGG | - | chr1_3:72385525-72385544 | Msa0139110:intron | 45.0% | |
| TCTGCACCCATGGCTTAATA+GGG | + | chr1_3:72385534-72385553 | None:intergenic | 45.0% | |
| TCTTTATCAGTCTGCACCCA+TGG | + | chr1_3:72385544-72385563 | None:intergenic | 45.0% | |
| GAGGAATGCACTTACACTCA+AGG | + | chr1_3:72385597-72385616 | None:intergenic | 45.0% | |
| GTACGGGCAATAACTGCATA+TGG | + | chr1_3:72385705-72385724 | None:intergenic | 45.0% | |
| !! | TTATATCAGCCGGGCTAGTA+CGG | + | chr1_3:72385722-72385741 | None:intergenic | 45.0% |
| !! | AGCACTGGTCTTATATCAGC+CGG | + | chr1_3:72385732-72385751 | None:intergenic | 45.0% |
| CACTCGGAATATCACATCCT+TGG | + | chr1_3:72385764-72385783 | None:intergenic | 45.0% | |
| AAACGCCTGAGGAATTCACT+CGG | + | chr1_3:72385780-72385799 | None:intergenic | 45.0% | |
| GTGAATTAGGAGTGACATGG+TGG | + | chr1_3:72386306-72386325 | None:intergenic | 45.0% | |
| ! | TCCGGTTTTCCTGCATCATT+TGG | + | chr1_3:72386477-72386496 | None:intergenic | 45.0% |
| AAATGATGCAGGAAAACCGG+AGG | - | chr1_3:72386476-72386495 | Msa0139110:CDS | 45.0% | |
| TTGAAGCCACTGCAAAATCG+AGG | - | chr1_3:72386604-72386623 | Msa0139110:intron | 45.0% | |
| ! | ATCACTCCTCGATTTTGCAG+TGG | + | chr1_3:72386613-72386632 | None:intergenic | 45.0% |
| !!! | TAAATATATAATTAATTTTG+AGG | - | chr1_3:72383026-72383045 | Msa0139110:intron | 5.0% |
| !!! | GTTCAGGTAGGGTTTTGGCT+TGG | + | chr1_3:72380820-72380839 | None:intergenic | 50.0% |
| CGACGGAGAAGAATCGAGAT+CGG | + | chr1_3:72380902-72380921 | None:intergenic | 50.0% | |
| AGGAGGTTGAGGAGTGACTT+TGG | + | chr1_3:72380958-72380977 | None:intergenic | 50.0% | |
| GAGAAACATGGAGGAGGTTG+AGG | + | chr1_3:72380969-72380988 | None:intergenic | 50.0% | |
| GTGGATGAGAAACATGGAGG+AGG | + | chr1_3:72380975-72380994 | None:intergenic | 50.0% | |
| TGAATGAGTAGCAGCAGGAG+CGG | + | chr1_3:72381000-72381019 | None:intergenic | 50.0% | |
| GAAGAAAAAGGAGGAGGTGG+AGG | + | chr1_3:72381098-72381117 | None:intergenic | 50.0% | |
| GTGGAAGAAAAAGGAGGAGG+TGG | + | chr1_3:72381101-72381120 | None:intergenic | 50.0% | |
| GAAGCGGTGGAAGAAAAAGG+AGG | + | chr1_3:72381107-72381126 | None:intergenic | 50.0% | |
| GAGGAAATTCCAGCGGTTAG+GGG | + | chr1_3:72381129-72381148 | None:intergenic | 50.0% | |
| GCTAAGTACACTCCACCTGA+TGG | - | chr1_3:72381405-72381424 | Msa0139110:intron | 50.0% | |
| AGAGAAGTAGCTCCATCAGG+TGG | + | chr1_3:72381420-72381439 | None:intergenic | 50.0% | |
| TCGAGAGAAGTAGCTCCATC+AGG | + | chr1_3:72381423-72381442 | None:intergenic | 50.0% | |
| ! | TGTGGGTGTCATGTCGGTAT+TGG | - | chr1_3:72381951-72381970 | Msa0139110:intron | 50.0% |
| CAGTGACACGTGTTGGACAT+CGG | - | chr1_3:72381975-72381994 | Msa0139110:intron | 50.0% | |
| GTGGCTCTTCGAATACGAAC+TGG | - | chr1_3:72382077-72382096 | Msa0139110:CDS | 50.0% | |
| TACTCAACTGCAGTGACAGG+TGG | - | chr1_3:72382945-72382964 | Msa0139110:CDS | 50.0% | |
| ACTCAACTGCAGTGACAGGT+GGG | - | chr1_3:72382946-72382965 | Msa0139110:CDS | 50.0% | |
| GTGTCTCTTCCCTTGGACTT+CGG | - | chr1_3:72383061-72383080 | Msa0139110:intron | 50.0% | |
| TGTCTCTTCCCTTGGACTTC+GGG | - | chr1_3:72383062-72383081 | Msa0139110:intron | 50.0% | |
| GCAACATTCCCGAAGTCCAA+GGG | + | chr1_3:72383073-72383092 | None:intergenic | 50.0% | |
| AGGGAAGTCCTTAGGCAACT+TGG | - | chr1_3:72383151-72383170 | Msa0139110:intron | 50.0% | |
| GAGTCCGAATGGATAGAGGT+GGG | - | chr1_3:72383199-72383218 | Msa0139110:intron | 50.0% | |
| CTCCTCTCAGGATAACTGCT+TGG | + | chr1_3:72383244-72383263 | None:intergenic | 50.0% | |
| GAGGAGTTGAGAAGGGAGTT+AGG | - | chr1_3:72383258-72383277 | Msa0139110:CDS | 50.0% | |
| AGGGAAAAGAACCTCCCACT+AGG | - | chr1_3:72383278-72383297 | Msa0139110:CDS | 50.0% | |
| GAAAAGAACCTCCCACTAGG+TGG | - | chr1_3:72383281-72383300 | Msa0139110:CDS | 50.0% | |
| CCTTCCTCAAACCACCTAGT+GGG | + | chr1_3:72383295-72383314 | None:intergenic | 50.0% | |
| CCACTAGGTGGTTTGAGGAA+GGG | - | chr1_3:72383293-72383312 | Msa0139110:CDS | 50.0% | |
| CACTAGGTGGTTTGAGGAAG+GGG | - | chr1_3:72383294-72383313 | Msa0139110:CDS | 50.0% | |
| GTACCCCTTTCATGCAAAGC+AGG | + | chr1_3:72383325-72383344 | None:intergenic | 50.0% | |
| ! | CAGTCAAGGGCGGTATGTTT+TGG | + | chr1_3:72383383-72383402 | None:intergenic | 50.0% |
| CAAAACATACCGCCCTTGAC+TGG | - | chr1_3:72383381-72383400 | Msa0139110:intron | 50.0% | |
| ! | AGTGTTGTTCCAGTCAAGGG+CGG | + | chr1_3:72383393-72383412 | None:intergenic | 50.0% |
| ! | GGCAGTGTTGTTCCAGTCAA+GGG | + | chr1_3:72383396-72383415 | None:intergenic | 50.0% |
| ! | TGGCAGTGTTGTTCCAGTCA+AGG | + | chr1_3:72383397-72383416 | None:intergenic | 50.0% |
| TGACTGGAACAACACTGCCA+AGG | - | chr1_3:72383397-72383416 | Msa0139110:intron | 50.0% | |
| GACTGGAACAACACTGCCAA+GGG | - | chr1_3:72383398-72383417 | Msa0139110:intron | 50.0% | |
| AACACTGCCAAGGGTAGGAA+TGG | - | chr1_3:72383407-72383426 | Msa0139110:intron | 50.0% | |
| AGTACGACCATTCCTACCCT+TGG | + | chr1_3:72383417-72383436 | None:intergenic | 50.0% | |
| GCTGCTTGCATATGCGCATT+AGG | - | chr1_3:72383594-72383613 | Msa0139110:intron | 50.0% | |
| GTTATGCTGCGATGTCGTAG+CGG | - | chr1_3:72383687-72383706 | Msa0139110:intron | 50.0% | |
| GCCCTGATCAAATGCTACAG+AGG | + | chr1_3:72383894-72383913 | None:intergenic | 50.0% | |
| TTTGGCCATGCTTCCTTCCA+GGG | - | chr1_3:72384522-72384541 | Msa0139110:intron | 50.0% | |
| GGAAGGAGCTTGTCTGTGTA+TGG | + | chr1_3:72384558-72384577 | None:intergenic | 50.0% | |
| CCTGAGGAAGCAAATCTGGA+AGG | + | chr1_3:72384575-72384594 | None:intergenic | 50.0% | |
| ! | CCTTCCAGATTTGCTTCCTC+AGG | - | chr1_3:72384572-72384591 | Msa0139110:intron | 50.0% |
| TGCTCCTGAGGAAGCAAATC+TGG | + | chr1_3:72384579-72384598 | None:intergenic | 50.0% | |
| GTGAACACATGTTGCTCCTG+AGG | + | chr1_3:72384591-72384610 | None:intergenic | 50.0% | |
| ! | CAACCTCACATGCACCGTTT+TGG | - | chr1_3:72384666-72384685 | Msa0139110:intron | 50.0% |
| ! | ACCTCACATGCACCGTTTTG+GGG | - | chr1_3:72384668-72384687 | Msa0139110:intron | 50.0% |
| !! | TCCAAGAAGGCATCAACTCC+GGG | + | chr1_3:72384899-72384918 | None:intergenic | 50.0% |
| TCCTGCCAATGACAGGCAAA+GGG | + | chr1_3:72385424-72385443 | None:intergenic | 50.0% | |
| ATCCTGCCAATGACAGGCAA+AGG | + | chr1_3:72385425-72385444 | None:intergenic | 50.0% | |
| ! | GGACACAGTTCTCAGGTTGT+AGG | + | chr1_3:72385513-72385532 | None:intergenic | 50.0% |
| GTCTGCACCCATGGCTTAAT+AGG | + | chr1_3:72385535-72385554 | None:intergenic | 50.0% | |
| AGTTATTGCCCGTACTAGCC+CGG | - | chr1_3:72385710-72385729 | Msa0139110:intron | 50.0% | |
| !! | TATATCAGCCGGGCTAGTAC+GGG | + | chr1_3:72385721-72385740 | None:intergenic | 50.0% |
| !! | GCACTGGTCTTATATCAGCC+GGG | + | chr1_3:72385731-72385750 | None:intergenic | 50.0% |
| ! | TGTATGGTGGTGTGGGACAA+GGG | - | chr1_3:72386082-72386101 | Msa0139110:intron | 50.0% |
| !!! | AGGGTTTTGGCTTGGCTTGG+TGG | + | chr1_3:72380812-72380831 | None:intergenic | 55.0% |
| !!! | GGTAGGGTTTTGGCTTGGCT+TGG | + | chr1_3:72380815-72380834 | None:intergenic | 55.0% |
| CGATGACGATGATGCTGCGA+CGG | + | chr1_3:72380919-72380938 | None:intergenic | 55.0% | |
| GTGACTTTGGCGAAGCGGAA+TGG | + | chr1_3:72380945-72380964 | None:intergenic | 55.0% | |
| GAGGAGTGACTTTGGCGAAG+CGG | + | chr1_3:72380950-72380969 | None:intergenic | 55.0% | |
| GCGGTGGATGAGAAACATGG+AGG | + | chr1_3:72380978-72380997 | None:intergenic | 55.0% | |
| GGAGGTGAATGAGTAGCAGC+AGG | + | chr1_3:72381005-72381024 | None:intergenic | 55.0% | |
| GGAAGAAGGTGGAGGAGTAG+CGG | + | chr1_3:72381066-72381085 | None:intergenic | 55.0% | |
| GAAAAAGGAGGAGGTGGAGG+AGG | + | chr1_3:72381095-72381114 | None:intergenic | 55.0% | |
| GCGGTGGAAGAAAAAGGAGG+AGG | + | chr1_3:72381104-72381123 | None:intergenic | 55.0% | |
| GGGGAAGCGGTGGAAGAAAA+AGG | + | chr1_3:72381110-72381129 | None:intergenic | 55.0% | |
| ATTCCAGCGGTTAGGGGAAG+CGG | + | chr1_3:72381123-72381142 | None:intergenic | 55.0% | |
| CACCGATGGCAGCGTATTTG+AGG | + | chr1_3:72381148-72381167 | None:intergenic | 55.0% | |
| ! | GTAAGAGGCGTAACCGGCTA+CGG | + | chr1_3:72381189-72381208 | None:intergenic | 55.0% |
| GTAGCCGGTTACGCCTCTTA+CGG | - | chr1_3:72381188-72381207 | Msa0139110:three_prime_UTR | 55.0% | |
| ! | CGAACCGTAAGAGGCGTAAC+CGG | + | chr1_3:72381195-72381214 | None:intergenic | 55.0% |
| CGCCTTGCTCGTCTTATGCT+TGG | + | chr1_3:72382516-72382535 | None:intergenic | 55.0% | |
| CATGCGAGTGTCTCTTCCCT+TGG | - | chr1_3:72383054-72383073 | Msa0139110:intron | 55.0% | |
| CGCAACATTCCCGAAGTCCA+AGG | + | chr1_3:72383074-72383093 | None:intergenic | 55.0% | |
| AGAAACATGTGCCTGGCGTG+TGG | - | chr1_3:72383174-72383193 | Msa0139110:intron | 55.0% | |
| GAAACATGTGCCTGGCGTGT+GGG | - | chr1_3:72383175-72383194 | Msa0139110:intron | 55.0% | |
| CGAGTCCGAATGGATAGAGG+TGG | - | chr1_3:72383198-72383217 | Msa0139110:intron | 55.0% | |
| GCCCAAGCAGTTATCCTGAG+AGG | - | chr1_3:72383239-72383258 | Msa0139110:CDS | 55.0% | |
| CTCCCTTCTCAACTCCTCTC+AGG | + | chr1_3:72383256-72383275 | None:intergenic | 55.0% | |
| ACCTCCCACTAGGTGGTTTG+AGG | - | chr1_3:72383288-72383307 | Msa0139110:CDS | 55.0% | |
| TCCTCAAACCACCTAGTGGG+AGG | + | chr1_3:72383292-72383311 | None:intergenic | 55.0% | |
| CCCACTAGGTGGTTTGAGGA+AGG | - | chr1_3:72383292-72383311 | Msa0139110:CDS | 55.0% | |
| CCCTTCCTCAAACCACCTAG+TGG | + | chr1_3:72383296-72383315 | None:intergenic | 55.0% | |
| GGTACTTGGTCCCCGAAAGA+AGG | - | chr1_3:72383340-72383359 | Msa0139110:intron | 55.0% | |
| GGAACAACACTGCCAAGGGT+AGG | - | chr1_3:72383402-72383421 | Msa0139110:intron | 55.0% | |
| CTTTGGCCATGCTTCCTTCC+AGG | - | chr1_3:72384521-72384540 | Msa0139110:intron | 55.0% | |
| TCCCCAAAACGGTGCATGTG+AGG | + | chr1_3:72384672-72384691 | None:intergenic | 55.0% | |
| !! | ACCCGGAGTTGATGCCTTCT+TGG | - | chr1_3:72384895-72384914 | Msa0139110:CDS | 55.0% |
| TCCCTTTGCCTGTCATTGGC+AGG | - | chr1_3:72385420-72385439 | Msa0139110:intron | 55.0% | |
| CCTTGGTAAGACTGCAGCAC+TGG | + | chr1_3:72385747-72385766 | None:intergenic | 55.0% | |
| CCAGTGCTGCAGTCTTACCA+AGG | - | chr1_3:72385744-72385763 | Msa0139110:intron | 55.0% | |
| AAACTACGCCCACCCTTGTC+TGG | - | chr1_3:72385983-72386002 | Msa0139110:intron | 55.0% | |
| ! | CTGTATGGTGGTGTGGGACA+AGG | - | chr1_3:72386081-72386100 | Msa0139110:intron | 55.0% |
| GCGGCGGTGGATGAGAAACA+TGG | + | chr1_3:72380981-72381000 | None:intergenic | 60.0% | |
| ATGAGTAGCAGCAGGAGCGG+CGG | + | chr1_3:72380997-72381016 | None:intergenic | 60.0% | |
| GAAGGAGTGGCAGAAGGAGG+AGG | + | chr1_3:72381026-72381045 | None:intergenic | 60.0% | |
| GGAGAAGGAGTGGCAGAAGG+AGG | + | chr1_3:72381029-72381048 | None:intergenic | 60.0% | |
| GGTGGAGAAGGAGTGGCAGA+AGG | + | chr1_3:72381032-72381051 | None:intergenic | 60.0% | |
| GAAGAGGGAGGAGGTGGAGA+AGG | + | chr1_3:72381044-72381063 | None:intergenic | 60.0% | |
| ! | GGTGGAGGAGTAGCGGAAGA+GGG | + | chr1_3:72381059-72381078 | None:intergenic | 60.0% |
| ! | AGGTGGAGGAGTAGCGGAAG+AGG | + | chr1_3:72381060-72381079 | None:intergenic | 60.0% |
| ! | GCTGCCATCGGTGCCTTAAC+CGG | - | chr1_3:72381155-72381174 | Msa0139110:three_prime_UTR | 60.0% |
| !! | GGTTCCGGTTAAGGCACCGA+TGG | + | chr1_3:72381162-72381181 | None:intergenic | 60.0% |
| TACGGCGGTGGTTCCGGTTA+AGG | + | chr1_3:72381171-72381190 | None:intergenic | 60.0% | |
| GGGCGAGTCCGAATGGATAG+AGG | - | chr1_3:72383195-72383214 | Msa0139110:intron | 60.0% | |
| GTGTGGGACAAGGGACAGTC+TGG | - | chr1_3:72386091-72386110 | Msa0139110:intron | 60.0% | |
| !! | GCTTGGCTTGGTGGAGACGC+CGG | + | chr1_3:72380803-72380822 | None:intergenic | 65.0% |
| GGAGTGGCAGAAGGAGGAGG+AGG | + | chr1_3:72381023-72381042 | None:intergenic | 65.0% | |
| GGGAGGAGGTGGAGAAGGAG+TGG | + | chr1_3:72381039-72381058 | None:intergenic | 65.0% | |
| ! | GTAGCGGAAGAGGGAGGAGG+TGG | + | chr1_3:72381050-72381069 | None:intergenic | 65.0% |
| ! | GGAGTAGCGGAAGAGGGAGG+AGG | + | chr1_3:72381053-72381072 | None:intergenic | 65.0% |
| ! | GGAGGAGTAGCGGAAGAGGG+AGG | + | chr1_3:72381056-72381075 | None:intergenic | 65.0% |
| ! | GGAGTGGCGGAAGAAGGTGG+AGG | + | chr1_3:72381074-72381093 | None:intergenic | 65.0% |
| ! | GGAGGAGTGGCGGAAGAAGG+TGG | + | chr1_3:72381077-72381096 | None:intergenic | 65.0% |
| ! | GGAGGAGGAGTGGCGGAAGA+AGG | + | chr1_3:72381080-72381099 | None:intergenic | 65.0% |
| AGGAGGTGGAGGAGGAGTGG+CGG | + | chr1_3:72381087-72381106 | None:intergenic | 65.0% | |
| AGGAGGAGGTGGAGGAGGAG+TGG | + | chr1_3:72381090-72381109 | None:intergenic | 65.0% | |
| ! | AGAGGCGTAACCGGCTACGG+CGG | + | chr1_3:72381186-72381205 | None:intergenic | 65.0% |
| !! | CCAGAGGCGTCTCTGTCCTC+CGG | + | chr1_3:72386495-72386514 | None:intergenic | 65.0% |
| AGTAGCAGCAGGAGCGGCGG+TGG | + | chr1_3:72380994-72381013 | None:intergenic | 70.0% | |
| CCAGCGGTTAGGGGAAGCGG+TGG | + | chr1_3:72381120-72381139 | None:intergenic | 70.0% | |
| CCACCGCTTCCCCTAACCGC+TGG | - | chr1_3:72381117-72381136 | Msa0139110:three_prime_UTR | 70.0% | |
| ACCGGAACCACCGCCGTAGC+CGG | - | chr1_3:72381173-72381192 | Msa0139110:three_prime_UTR | 70.0% | |
| ACCGGCTACGGCGGTGGTTC+CGG | + | chr1_3:72381177-72381196 | None:intergenic | 70.0% | |
| TTCGGACTCGCCCACACGCC+AGG | + | chr1_3:72383188-72383207 | None:intergenic | 70.0% | |
| GGCGTGTGGGCGAGTCCGAA+TGG | - | chr1_3:72383188-72383207 | Msa0139110:intron | 70.0% | |
| CCGGAGGACAGAGACGCCTC+TGG | - | chr1_3:72386492-72386511 | Msa0139110:intron | 70.0% | |
| GGCGTAACCGGCTACGGCGG+TGG | + | chr1_3:72381183-72381202 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 72380795 | 72387061 | 72380795 | ID=Msa0139110;Name=Msa0139110 |
| chr1_3 | mRNA | 72380795 | 72387061 | 72380795 | ID=Msa0139110-mRNA-1;Parent=Msa0139110;Name=Msa0139110-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.8|0.81|0.90|0.8|0.81|11|480|430 |
| chr1_3 | exon | 72380795 | 72381369 | 72380795 | ID=Msa0139110-mRNA-1:exon:25270;Parent=Msa0139110-mRNA-1 |
| chr1_3 | exon | 72381495 | 72381508 | 72381495 | ID=Msa0139110-mRNA-1:exon:25269;Parent=Msa0139110-mRNA-1 |
| chr1_3 | exon | 72382042 | 72382144 | 72382042 | ID=Msa0139110-mRNA-1:exon:25268;Parent=Msa0139110-mRNA-1 |
| chr1_3 | exon | 72382255 | 72382414 | 72382255 | ID=Msa0139110-mRNA-1:exon:25267;Parent=Msa0139110-mRNA-1 |
| chr1_3 | exon | 72382692 | 72382790 | 72382692 | ID=Msa0139110-mRNA-1:exon:25266;Parent=Msa0139110-mRNA-1 |
| chr1_3 | exon | 72382886 | 72382990 | 72382886 | ID=Msa0139110-mRNA-1:exon:25265;Parent=Msa0139110-mRNA-1 |
| chr1_3 | exon | 72383200 | 72383313 | 72383200 | ID=Msa0139110-mRNA-1:exon:25264;Parent=Msa0139110-mRNA-1 |
| chr1_3 | exon | 72383423 | 72383484 | 72383423 | ID=Msa0139110-mRNA-1:exon:25263;Parent=Msa0139110-mRNA-1 |
| chr1_3 | exon | 72384893 | 72384929 | 72384893 | ID=Msa0139110-mRNA-1:exon:25262;Parent=Msa0139110-mRNA-1 |
| chr1_3 | exon | 72386413 | 72386501 | 72386413 | ID=Msa0139110-mRNA-1:exon:25261;Parent=Msa0139110-mRNA-1 |
| chr1_3 | exon | 72386647 | 72387061 | 72386647 | ID=Msa0139110-mRNA-1:exon:25260;Parent=Msa0139110-mRNA-1 |
| chr1_3 | CDS | 72386647 | 72387061 | 72386647 | ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1 |
| chr1_3 | CDS | 72386413 | 72386501 | 72386413 | ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1 |
| chr1_3 | CDS | 72384893 | 72384929 | 72384893 | ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1 |
| chr1_3 | CDS | 72383423 | 72383484 | 72383423 | ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1 |
| chr1_3 | CDS | 72383200 | 72383313 | 72383200 | ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1 |
| chr1_3 | CDS | 72382886 | 72382990 | 72382886 | ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1 |
| chr1_3 | CDS | 72382692 | 72382790 | 72382692 | ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1 |
| chr1_3 | CDS | 72382255 | 72382414 | 72382255 | ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1 |
| chr1_3 | CDS | 72382042 | 72382144 | 72382042 | ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1 |
| chr1_3 | CDS | 72381495 | 72381508 | 72381495 | ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1 |
| chr1_3 | CDS | 72381275 | 72381369 | 72381275 | ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1 |
| chr1_3 | three_prime_UTR | 72380795 | 72381274 | 72380795 | ID=Msa0139110-mRNA-1:three_prime_utr;Parent=Msa0139110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
