AlfalfaGEDB | Msa0139110

M. sativa cultivar zhongmu-4 / Msa0139110

KEGG: K17496
GO: GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006464 GO:0006470 GO:0006605 GO:0006626 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017038 GO:0019538 GO:0019866 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036211 GO:0042578 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:0140096 GO:1901564 GO:1990542
PFAM: PF03031.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0139110	XP_003617793.1	90.164	366	34	1	30	395	1	364	0.0	606

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0139110	sp\|Q8VYE2\|TIM50_ARATH	60.289	277	106	2	116	389	81	356	1.81e-119	355

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0139110	G7K4N6	90.164	366	34	1	30	395	1	364	0.0	606

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0139110	Msa0149980	0.807816	4.202294e-50	-8.615850e-47
Msa0139110	Msa0252470	0.803089	4.117831e-49	-8.615850e-47
Msa0139110	Msa0291960	0.814143	1.789902e-51	-8.615850e-47
Msa0139110	Msa0333220	0.810716	1.003649e-50	-8.615850e-47
Msa0139110	Msa0743920	0.998437	4.772780e-265	-8.615850e-47
Msa0139110	Msa0748180	0.995515	4.812047e-217	-8.615850e-47
Msa0139110	Msa0864230	0.994816	1.868582e-210	-8.615850e-47
Msa0139110	Msa1071040	0.802967	4.363639e-49	-8.615850e-47
Msa0139110	Msa1115190	0.801506	8.720440e-49	-8.615850e-47
Msa0139110	Msa1159030	0.804503	2.093484e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0139110	MtrunA17_Chr5g0446321	90.164	366	34	1	30	395	1	364	0.0	606
Msa0139110	MtrunA17_Chr3g0078241	34.973	183	95	6	212	374	282	460	4.91e-20	92.0
Msa0139110	MtrunA17_Chr2g0303951	32.973	185	104	6	211	379	286	466	3.32e-19	89.7
Msa0139110	MtrunA17_Chr5g0419741	30.526	190	100	5	224	396	126	300	2.58e-17	82.4
Msa0139110	MtrunA17_Chr3g0122541	31.293	147	82	4	215	342	268	414	1.55e-14	75.5
Msa0139110	MtrunA17_Chr2g0284551	30.573	157	90	2	203	343	91	244	3.21e-14	72.8
Msa0139110	MtrunA17_Chr3g0113611	28.671	143	96	4	246	386	129	267	1.41e-12	67.8
Msa0139110	MtrunA17_Chr5g0437111	28.244	131	90	3	246	374	155	283	9.23e-12	65.9
Msa0139110	MtrunA17_Chr3g0122521	32.632	95	63	1	249	342	59	153	3.96e-11	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0139110	AT1G55900.2	60.215	279	107	2	116	391	81	358	1.02e-120	356
Msa0139110	AT1G55900.1	60.289	277	106	2	116	389	81	356	1.84e-120	355
Msa0139110	AT5G11860.3	29.834	181	105	5	213	374	99	276	2.08e-17	82.8
Msa0139110	AT5G11860.5	29.834	181	105	5	213	374	99	276	2.08e-17	82.8
Msa0139110	AT5G11860.1	29.834	181	105	5	213	374	99	276	2.08e-17	82.8
Msa0139110	AT5G11860.4	29.834	181	105	5	213	374	99	276	2.08e-17	82.8
Msa0139110	AT5G11860.2	29.834	181	105	5	213	374	99	276	2.08e-17	82.8
Msa0139110	AT5G45700.1	31.638	177	98	5	224	381	99	271	4.92e-15	75.5
Msa0139110	AT1G29780.1	31.169	154	88	4	224	360	51	203	1.44e-14	73.2
Msa0139110	AT5G46410.2	31.737	167	95	5	224	374	285	448	1.50e-14	75.9

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Find 146 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTGATTCACTACATT+TGG	0.275640	1_3:-72383203	Msa0139110:CDS
AAACGCCTGAGGAATTCACT+CGG	0.654658	1_3:+72382057	None:intergenic
AAAGCTTAACAGAGTTGATC+CGG	0.510006	1_3:-72387053	None:intergenic
AAATGAAAGAGGTTCAGGTA+GGG	0.586182	1_3:+72387006	None:intergenic
AAATGAAATGAAAGAGGTTC+AGG	0.372153	1_3:+72387001	None:intergenic
AAATGATGCAGGAAAACCGG+AGG	0.687211	1_3:-72381358	Msa0139110:intron
AAATTTAGGTTGGTTGTTGA+AGG	0.444026	1_3:-72381494	Msa0139110:intron
AAGAGGTTCAGGTAGGGTTT+TGG	0.354118	1_3:+72387012	None:intergenic
AATATATTTGATTTCTAAAA+TGG	0.149532	1_3:-72380890	Msa0139110:three_prime_UTR
ACCCGGAGTTGATGCCTTCT+TGG	0.287511	1_3:-72382939	Msa0139110:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAAATGAAAGAGGTTC+AGG	+	chr1_3:72380836-72380855	None:intergenic	30.0%
AATTATGACAAAACTCAGCA+TGG	-	chr1_3:72381708-72381727	Msa0139110:intron	30.0%
ATTCACTGTAATCACATATG+TGG	-	chr1_3:72381933-72381952	Msa0139110:intron	30.0%
TTCACTGTAATCACATATGT+GGG	-	chr1_3:72381934-72381953	Msa0139110:intron	30.0%
TTGGATGTAACACTTTGATA+TGG	-	chr1_3:72382174-72382193	Msa0139110:intron	30.0%
TAATAGACCTCAACATTAGT+AGG	-	chr1_3:72382371-72382390	Msa0139110:CDS	30.0%
AAACAAAAGGCCTAAAAACA+GGG	-	chr1_3:72382614-72382633	Msa0139110:intron	30.0%
GACTAAAAACAGGAAACAAA+AGG	-	chr1_3:72382644-72382663	Msa0139110:intron	30.0%
AAACAAAAGGCCTAAAAACA+GGG	-	chr1_3:72382614-72382633	Msa0139110:intron	30.0%
TTAAGTTCATGTTGCATAAG+AGG	+	chr1_3:72382726-72382745	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	72380795	72387061	72380795	ID=Msa0139110;Name=Msa0139110
chr1_3	mRNA	72380795	72387061	72380795	ID=Msa0139110-mRNA-1;Parent=Msa0139110;Name=Msa0139110-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0.8\|0.81\|0.90\|0.8\|0.81\|11\|480\|430
chr1_3	exon	72380795	72381369	72380795	ID=Msa0139110-mRNA-1:exon:25270;Parent=Msa0139110-mRNA-1
chr1_3	exon	72381495	72381508	72381495	ID=Msa0139110-mRNA-1:exon:25269;Parent=Msa0139110-mRNA-1
chr1_3	exon	72382042	72382144	72382042	ID=Msa0139110-mRNA-1:exon:25268;Parent=Msa0139110-mRNA-1
chr1_3	exon	72382255	72382414	72382255	ID=Msa0139110-mRNA-1:exon:25267;Parent=Msa0139110-mRNA-1
chr1_3	exon	72382692	72382790	72382692	ID=Msa0139110-mRNA-1:exon:25266;Parent=Msa0139110-mRNA-1
chr1_3	exon	72382886	72382990	72382886	ID=Msa0139110-mRNA-1:exon:25265;Parent=Msa0139110-mRNA-1
chr1_3	exon	72383200	72383313	72383200	ID=Msa0139110-mRNA-1:exon:25264;Parent=Msa0139110-mRNA-1
chr1_3	exon	72383423	72383484	72383423	ID=Msa0139110-mRNA-1:exon:25263;Parent=Msa0139110-mRNA-1
chr1_3	exon	72384893	72384929	72384893	ID=Msa0139110-mRNA-1:exon:25262;Parent=Msa0139110-mRNA-1
chr1_3	exon	72386413	72386501	72386413	ID=Msa0139110-mRNA-1:exon:25261;Parent=Msa0139110-mRNA-1
chr1_3	exon	72386647	72387061	72386647	ID=Msa0139110-mRNA-1:exon:25260;Parent=Msa0139110-mRNA-1
chr1_3	CDS	72386647	72387061	72386647	ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1
chr1_3	CDS	72386413	72386501	72386413	ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1
chr1_3	CDS	72384893	72384929	72384893	ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1
chr1_3	CDS	72383423	72383484	72383423	ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1
chr1_3	CDS	72383200	72383313	72383200	ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1
chr1_3	CDS	72382886	72382990	72382886	ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1
chr1_3	CDS	72382692	72382790	72382692	ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1
chr1_3	CDS	72382255	72382414	72382255	ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1
chr1_3	CDS	72382042	72382144	72382042	ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1
chr1_3	CDS	72381495	72381508	72381495	ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1
chr1_3	CDS	72381275	72381369	72381275	ID=Msa0139110-mRNA-1:cds;Parent=Msa0139110-mRNA-1
chr1_3	three_prime_UTR	72380795	72381274	72380795	ID=Msa0139110-mRNA-1:three_prime_utr;Parent=Msa0139110-mRNA-1

Gene Sequence

>Msa0139110

TTGATCCGGCGTCTCCACCAAGCCAAGCCAAAACCCTACCTGAACCTCTTTCATTTCATTTCATTCATTCTCATCACCATAACAACAATGTCTCTCCAAATTCTCCGATCTCGATTCTTCTCCGTCGCAGCATCATCGTCATCGAAGCCATTCCGCTTCGCCAAAGTCACTCCTCAACCTCCTCCATGTTTCTCATCCACCGCCGCTCCTGCTGCTACTCATTCACCTCCTCCTCCTTCTGCCACTCCTTCTCCACCTCCTCCCTCTTCCGCTACTCCTCCACCTTCTTCCGCCACTCCTCCTCCACCTCCTCCTTTTTCTTCCACCGCTTCCCCTAACCGCTGGAATTTCCTCAAATACGCTGCCATCGGTGCCTTAACCGGAACCACCGCCGTAGCCGGTTACGCCTCTTACGCTTATAGTTCGGACGAAATTGAGGAGAAAACGAAGTCGTTTCGTGATTCCGCTAAGTACACTCCACCTGATGGAGCTACTTCTCTCGATAAATTTCAAGGGATGGTATACTCAACTGCAGTGACAGTGCCTGCTAAAGCAGTAGAGCTTTATTTGGATGCAAGAAGGTTTATTGAAGAACACGTTAGGGGTTATACAGAACCATACACAGACAAGCTCCTTCCAGATTTGCTTCCTCAGGAGCAACATGTGTTCACACTTGTTCTAGATCTCAATGAAACATTGATTCACTACATTTGGACGCGAGATACAAGCTGGCAGACTTTTAAAAGACCCGGAGTTGATGCCTTCTTGGAACATCTAGCTCAGTTCTTTGAAATAGTGGTGTATACAGATGAACAGAATATGTTTGTAGACCCTGTTATAGAAAGGCTGGATCCTAAGCACTGCATTAGGTACAGGCTCTCGAGACCTGCTACTAAGTATCAGGATGGGAAACACTATAGAGATCTTTCAAAACTAAACAGGAATCCTGCAAAAGTTATGTACTTAAGTGGCCATGCTTTAGAAAGTTGCCTACAACCTGAGAACTGTGTCCCTATTAAGCCATGGGTGCAGACTGATAAAGATGATACAGCTCTTGTGGATTTCATACCATTCCTTGAGTTTATTGCCCGTACTAGCCCGGCTGATATAAGACCAGTGCTGCAGTCTTACCAAGGATGTGATATTCCGAGTGAATTCCTCAGGCGTTTCAAATTGCATAAGGAGTTGGTTGTTGAAGGAAAACCGGAGGACAGAGACGCCTCTGGAAGTAACAATACTGAATTGAATGATACAAGTTTGTCGTCAAGAGATTTTCAGTTTCATGAGAATTGA

Protein sequence

>Msa0139110

LIRRLHQAKPKPYLNLFHFISFILITITTMSLQILRSRFFSVAASSSSKPFRFAKVTPQPPPCFSSTAAPAATHSPPPPSATPSPPPPSSATPPPSSATPPPPPPFSSTASPNRWNFLKYAAIGALTGTTAVAGYASYAYSSDEIEEKTKSFRDSAKYTPPDGATSLDKFQGMVYSTAVTVPAKAVELYLDARRFIEEHVRGYTEPYTDKLLPDLLPQEQHVFTLVLDLNETLIHYIWTRDTSWQTFKRPGVDAFLEHLAQFFEIVVYTDEQNMFVDPVIERLDPKHCIRYRLSRPATKYQDGKHYRDLSKLNRNPAKVMYLSGHALESCLQPENCVPIKPWVQTDKDDTALVDFIPFLEFIARTSPADIRPVLQSYQGCDIPSEFLRRFKLHKELVVEGKPEDRDASGSNNTELNDTSLSSRDFQFHEN*