AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1163980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163980 MtrunA17_Chr7g0261461 100.000 64 0 0 38 101 1 64 5.01e-43 134
Msa1163980 MtrunA17_Chr8g0368411 85.938 64 9 0 38 101 1 64 3.64e-35 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163980 AT2G20490.1 79.688 64 13 0 38 101 1 64 5.43e-32 107
Msa1163980 AT2G20490.3 79.688 64 13 0 38 101 1 64 5.43e-32 107
Msa1163980 AT2G20490.2 78.125 64 13 1 38 101 1 63 1.37e-29 100

Find 41 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAGGAAGGAAGGGTTTA+AGG 0.183369 7_4:+55484031 None:intergenic
TGCCACTTAGGTCTAACATT+TGG 0.292262 7_4:+55482083 None:intergenic
TGATTCAAGGTTTACCTTAG+TGG 0.314345 7_4:+55483787 None:intergenic
AATACTTTGGAGCTGGATGC+TGG 0.320451 7_4:+55482243 None:intergenic
GCCACTTAGGTCTAACATTT+GGG 0.336600 7_4:+55482084 None:intergenic
GTTAAACTGAAGAAGCGATT+TGG 0.348976 7_4:-55482278 Msa1163980:CDS
CTATTATAGTGATTCTCCTT+TGG 0.390617 7_4:-55482200 Msa1163980:three_prime_UTR
TGCTCTGAAAATTTGTCATC+AGG 0.402146 7_4:+55482305 None:intergenic
ATTTGTCATCAGGTGAAAAC+CGG 0.402459 7_4:+55482315 None:intergenic
TGGTTCTTCGCCTCCATCCT+AGG 0.418805 7_4:-55484005 Msa1163980:CDS
AAGTTCAACATTTGCCACTT+AGG 0.422991 7_4:+55482071 None:intergenic
ACCCTTCCTTCCTTCATCGC+TGG 0.424486 7_4:-55484025 Msa1163980:CDS
CTTTCTTCTGTTTCTCAACA+AGG 0.424831 7_4:-55483978 Msa1163980:intron
GTTGCATACGTTGAAAAGTC+AGG 0.457075 7_4:-55481894 Msa1163980:three_prime_UTR
TTGAATATAGCTCAATACTT+TGG 0.457998 7_4:+55482230 None:intergenic
AGGCGAAGAACCAGCGATGA+AGG 0.485944 7_4:+55484015 None:intergenic
TGCAGAAAGAGTCACCGCTT+GGG 0.506313 7_4:-55483693 Msa1163980:intron
AAATCATATCAAAATTGCTA+TGG 0.510024 7_4:-55481926 Msa1163980:three_prime_UTR
TTTGGAGCTGGATGCTGGGT+TGG 0.510089 7_4:+55482248 None:intergenic
ATACTTTGGAGCTGGATGCT+GGG 0.511217 7_4:+55482244 None:intergenic
ATAGCTCAATACTTTGGAGC+TGG 0.511390 7_4:+55482236 None:intergenic
TGTTGAACTTCACTGATGAA+TGG 0.522292 7_4:-55482058 Msa1163980:three_prime_UTR
TTGCAGAAAGAGTCACCGCT+TGG 0.526675 7_4:-55483694 Msa1163980:intron
TCCCAAATGTTAGACCTAAG+TGG 0.527548 7_4:-55482085 Msa1163980:three_prime_UTR
GCTACTCAATCTGCTCATCC+AGG 0.527880 7_4:-55483667 Msa1163980:intron
GCATGAACACAAAACGAGTA+GGG 0.541568 7_4:-55481858 Msa1163980:three_prime_UTR
AACCAGCGATGAAGGAAGGA+AGG 0.546547 7_4:+55484023 None:intergenic
AGAAGAAAGAAAACCTAGGA+TGG 0.552691 7_4:+55483992 None:intergenic
TTTGTCATCAGGTGAAAACC+GGG 0.561589 7_4:+55482316 None:intergenic
GAAGAACCAGCGATGAAGGA+AGG 0.569428 7_4:+55484019 None:intergenic
TTGCATACGTTGAAAAGTCA+GGG 0.612443 7_4:-55481893 Msa1163980:three_prime_UTR
GATGTAAAACTGAAGATACA+TGG 0.619474 7_4:+55483835 None:intergenic
TGACAAGGTCTACACCACTA+AGG 0.622254 7_4:-55483801 Msa1163980:intron
CATCAACGATAACGGTGACA+AGG 0.625395 7_4:-55483816 Msa1163980:CDS
AAACAGAAGAAAGAAAACCT+AGG 0.627521 7_4:+55483988 None:intergenic
AGCATGAACACAAAACGAGT+AGG 0.631761 7_4:-55481859 Msa1163980:three_prime_UTR
ACGTTGAAAAGTCAGGGAGA+AGG 0.636255 7_4:-55481887 Msa1163980:three_prime_UTR
ACCAGCGATGAAGGAAGGAA+GGG 0.649017 7_4:+55484024 None:intergenic
AGACTGCTGCTAATCACCAA+AGG 0.652442 7_4:+55482184 None:intergenic
AGAAAGAAAACCTAGGATGG+AGG 0.653116 7_4:+55483995 None:intergenic
GATTGAGTAGCTAACCCAAG+CGG 0.699776 7_4:+55483679 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATTTAAAA+AGG - chr7_4:55482996-55483015 Msa1163980:intron 0.0%
!! ATATATATATATATTTAAAA+AGG - chr7_4:55482996-55483015 Msa1163980:intron 0.0%
!!! AATAAAGAAATATTACTTTT+TGG - chr7_4:55483272-55483291 Msa1163980:intron 10.0%
!!! AATAAAGAAATATTACTTTT+TGG - chr7_4:55483272-55483291 Msa1163980:intron 10.0%
!! TTCAATAAATTGTAAACAAA+AGG + chr7_4:55482003-55482022 None:intergenic 15.0%
!!! TATATTTTTCAAATAAACGT+TGG + chr7_4:55482154-55482173 None:intergenic 15.0%
!! TCAAAGATTAAAGAAAAAAA+TGG + chr7_4:55482286-55482305 None:intergenic 15.0%
!!! AAATATTACTTTTTGGAATT+TGG - chr7_4:55483279-55483298 Msa1163980:intron 15.0%
!! TAAAAAAAAAATGAGACATA+GGG - chr7_4:55483334-55483353 Msa1163980:intron 15.0%
!!! TTTTGCATTCTAAATAATAT+TGG + chr7_4:55483505-55483524 None:intergenic 15.0%
!! TTCAATAAATTGTAAACAAA+AGG + chr7_4:55482003-55482022 None:intergenic 15.0%
!!! TATATTTTTCAAATAAACGT+TGG + chr7_4:55482154-55482173 None:intergenic 15.0%
!! TCAAAGATTAAAGAAAAAAA+TGG + chr7_4:55482286-55482305 None:intergenic 15.0%
!!! AAATATTACTTTTTGGAATT+TGG - chr7_4:55483279-55483298 Msa1163980:intron 15.0%
!! TAAAAAAAAAATGAGACATA+GGG - chr7_4:55483334-55483353 Msa1163980:intron 15.0%
!!! TTTTGCATTCTAAATAATAT+TGG + chr7_4:55483505-55483524 None:intergenic 15.0%
!!! TTTCTTTAATCTTTGAAACA+TGG - chr7_4:55482290-55482309 Msa1163980:CDS 20.0%
!! TATTGAAAATTGAAACTGAT+AGG - chr7_4:55482474-55482493 Msa1163980:intron 20.0%
!! TAAAGTAAGGAAATTGATAT+GGG + chr7_4:55482915-55482934 None:intergenic 20.0%
!!! CTCAAGTTAAATTGTTTTAA+CGG + chr7_4:55483183-55483202 None:intergenic 20.0%
!! CTAAAAAAAAAATGAGACAT+AGG - chr7_4:55483333-55483352 Msa1163980:intron 20.0%
!! AAATCATATCAAAATTGCTA+TGG - chr7_4:55483971-55483990 Msa1163980:intron 20.0%
!!! TTTCTTTAATCTTTGAAACA+TGG - chr7_4:55482290-55482309 Msa1163980:CDS 20.0%
!! TATTGAAAATTGAAACTGAT+AGG - chr7_4:55482474-55482493 Msa1163980:intron 20.0%
!! TAAAGTAAGGAAATTGATAT+GGG + chr7_4:55482915-55482934 None:intergenic 20.0%
!!! CTCAAGTTAAATTGTTTTAA+CGG + chr7_4:55483183-55483202 None:intergenic 20.0%
!! CTAAAAAAAAAATGAGACAT+AGG - chr7_4:55483333-55483352 Msa1163980:intron 20.0%
!! AAATCATATCAAAATTGCTA+TGG - chr7_4:55483971-55483990 Msa1163980:intron 20.0%
! GTATTAAAATCCTTGATTCA+AGG + chr7_4:55482126-55482145 None:intergenic 25.0%
!!! GATATTTGTTGTCAAAGTAT+TGG - chr7_4:55482366-55482385 Msa1163980:intron 25.0%
!! CAATATTTTACCTCGAAAAT+TGG + chr7_4:55482459-55482478 None:intergenic 25.0%
! TCTATGTGTCATGAAAATTT+AGG - chr7_4:55482672-55482691 Msa1163980:intron 25.0%
! AGTAAAAAATGAGAACTAGA+GGG + chr7_4:55482799-55482818 None:intergenic 25.0%
! AAGTAAAAAATGAGAACTAG+AGG + chr7_4:55482800-55482819 None:intergenic 25.0%
! GTAAAGTAAGGAAATTGATA+TGG + chr7_4:55482916-55482935 None:intergenic 25.0%
!!! CGTTAAAACAATTTAACTTG+AGG - chr7_4:55483181-55483200 Msa1163980:intron 25.0%
!!! ATGTTTTGAATTGTGAAGTA+AGG - chr7_4:55483360-55483379 Msa1163980:intron 25.0%
!!! TGTTTTGAATTGTGAAGTAA+GGG - chr7_4:55483361-55483380 Msa1163980:intron 25.0%
! TAGAAGTTGTCAAAACAAAA+AGG + chr7_4:55483472-55483491 None:intergenic 25.0%
! CATTAATAGTTGTAGAAAGT+TGG + chr7_4:55483529-55483548 None:intergenic 25.0%
! TTGAATATAGCTCAATACTT+TGG + chr7_4:55483670-55483689 None:intergenic 25.0%
! GTATTAAAATCCTTGATTCA+AGG + chr7_4:55482126-55482145 None:intergenic 25.0%
!!! GATATTTGTTGTCAAAGTAT+TGG - chr7_4:55482366-55482385 Msa1163980:intron 25.0%
!! CAATATTTTACCTCGAAAAT+TGG + chr7_4:55482459-55482478 None:intergenic 25.0%
! TCTATGTGTCATGAAAATTT+AGG - chr7_4:55482672-55482691 Msa1163980:intron 25.0%
! AGTAAAAAATGAGAACTAGA+GGG + chr7_4:55482799-55482818 None:intergenic 25.0%
! AAGTAAAAAATGAGAACTAG+AGG + chr7_4:55482800-55482819 None:intergenic 25.0%
! GTAAAGTAAGGAAATTGATA+TGG + chr7_4:55482916-55482935 None:intergenic 25.0%
!!! CGTTAAAACAATTTAACTTG+AGG - chr7_4:55483181-55483200 Msa1163980:intron 25.0%
!!! ATGTTTTGAATTGTGAAGTA+AGG - chr7_4:55483360-55483379 Msa1163980:intron 25.0%
!!! TGTTTTGAATTGTGAAGTAA+GGG - chr7_4:55483361-55483380 Msa1163980:intron 25.0%
! TAGAAGTTGTCAAAACAAAA+AGG + chr7_4:55483472-55483491 None:intergenic 25.0%
! CATTAATAGTTGTAGAAAGT+TGG + chr7_4:55483529-55483548 None:intergenic 25.0%
! TTGAATATAGCTCAATACTT+TGG + chr7_4:55483670-55483689 None:intergenic 25.0%
AAACAGAAGAAAGAAAACCT+AGG + chr7_4:55481912-55481931 None:intergenic 30.0%
!!! AACTTTTTTCTACAGTGACA+AGG - chr7_4:55482021-55482040 Msa1163980:three_prime_UTR 30.0%
GATGTAAAACTGAAGATACA+TGG + chr7_4:55482065-55482084 None:intergenic 30.0%
! CAGTTTTACATCAACGATAA+CGG - chr7_4:55482073-55482092 Msa1163980:three_prime_UTR 30.0%
!! GCTAATTTTAGCAAAATACC+TGG + chr7_4:55482251-55482270 None:intergenic 30.0%
TTTGCATTTGGATTTGCAAT+TGG - chr7_4:55482509-55482528 Msa1163980:intron 30.0%
TTGGATTTGCAATTGGATAT+AGG - chr7_4:55482516-55482535 Msa1163980:intron 30.0%
TGGATTTGCAATTGGATATA+GGG - chr7_4:55482517-55482536 Msa1163980:intron 30.0%
! TTAGGACCTATTCATTTTCA+TGG - chr7_4:55482690-55482709 Msa1163980:intron 30.0%
TTTGCAATGAGAATTAAGAG+TGG + chr7_4:55482742-55482761 None:intergenic 30.0%
TCAATTTCCTTACTTTACCT+TGG - chr7_4:55482918-55482937 Msa1163980:intron 30.0%
!!! GTGATTTTGGTTACAACATT+AGG - chr7_4:55483118-55483137 Msa1163980:intron 30.0%
CTATTATAGTGATTCTCCTT+TGG - chr7_4:55483697-55483716 Msa1163980:intron 30.0%
! ACATTTGGGAAAGATTTTCA+CGG + chr7_4:55483802-55483821 None:intergenic 30.0%
AAACAGAAGAAAGAAAACCT+AGG + chr7_4:55481912-55481931 None:intergenic 30.0%
!!! AACTTTTTTCTACAGTGACA+AGG - chr7_4:55482021-55482040 Msa1163980:three_prime_UTR 30.0%
GATGTAAAACTGAAGATACA+TGG + chr7_4:55482065-55482084 None:intergenic 30.0%
! CAGTTTTACATCAACGATAA+CGG - chr7_4:55482073-55482092 Msa1163980:three_prime_UTR 30.0%
!! GCTAATTTTAGCAAAATACC+TGG + chr7_4:55482251-55482270 None:intergenic 30.0%
TTTGCATTTGGATTTGCAAT+TGG - chr7_4:55482509-55482528 Msa1163980:intron 30.0%
TTGGATTTGCAATTGGATAT+AGG - chr7_4:55482516-55482535 Msa1163980:intron 30.0%
TGGATTTGCAATTGGATATA+GGG - chr7_4:55482517-55482536 Msa1163980:intron 30.0%
! TTAGGACCTATTCATTTTCA+TGG - chr7_4:55482690-55482709 Msa1163980:intron 30.0%
TTTGCAATGAGAATTAAGAG+TGG + chr7_4:55482742-55482761 None:intergenic 30.0%
TCAATTTCCTTACTTTACCT+TGG - chr7_4:55482918-55482937 Msa1163980:intron 30.0%
!!! GTGATTTTGGTTACAACATT+AGG - chr7_4:55483118-55483137 Msa1163980:intron 30.0%
CTATTATAGTGATTCTCCTT+TGG - chr7_4:55483697-55483716 Msa1163980:intron 30.0%
! ACATTTGGGAAAGATTTTCA+CGG + chr7_4:55483802-55483821 None:intergenic 30.0%
AGAAGAAAGAAAACCTAGGA+TGG + chr7_4:55481908-55481927 None:intergenic 35.0%
! CTTTCTTCTGTTTCTCAACA+AGG - chr7_4:55481919-55481938 Msa1163980:three_prime_UTR 35.0%
! TTTTTCTACAGTGACAAGGT+TGG - chr7_4:55482025-55482044 Msa1163980:three_prime_UTR 35.0%
TGATTCAAGGTTTACCTTAG+TGG + chr7_4:55482113-55482132 None:intergenic 35.0%
CTAAGGTAAACCTTGAATCA+AGG - chr7_4:55482113-55482132 Msa1163980:three_prime_UTR 35.0%
TCAGCTAGAAACTTTGCATT+TGG - chr7_4:55482497-55482516 Msa1163980:intron 35.0%
GGATTTGCAATTGGATATAG+GGG - chr7_4:55482518-55482537 Msa1163980:intron 35.0%
! TAGGGGAGGTATACATAAAA+AGG - chr7_4:55482535-55482554 Msa1163980:intron 35.0%
AGAGAGATTCAAACATAGAG+AGG - chr7_4:55482597-55482616 Msa1163980:intron 35.0%
AGACAGACACATTTGAGAAT+AGG - chr7_4:55482642-55482661 Msa1163980:intron 35.0%
AGTGGACCATGAAAATGAAT+AGG + chr7_4:55482699-55482718 None:intergenic 35.0%
AATCGAAAACAAGGGATGAT+AGG + chr7_4:55482868-55482887 None:intergenic 35.0%
GGATTTGCAATCGAAAACAA+GGG + chr7_4:55482876-55482895 None:intergenic 35.0%
TGGATTTGCAATCGAAAACA+AGG + chr7_4:55482877-55482896 None:intergenic 35.0%
TCAATCTCCAAGGTAAAGTA+AGG + chr7_4:55482928-55482947 None:intergenic 35.0%
TTGTAACCAAAATCACTGTG+GGG + chr7_4:55483114-55483133 None:intergenic 35.0%
GTTGTAACCAAAATCACTGT+GGG + chr7_4:55483115-55483134 None:intergenic 35.0%
TGTTGTAACCAAAATCACTG+TGG + chr7_4:55483116-55483135 None:intergenic 35.0%
ACAACAAAAGAAGTAGACGA+GGG + chr7_4:55483247-55483266 None:intergenic 35.0%
AACAACAAAAGAAGTAGACG+AGG + chr7_4:55483248-55483267 None:intergenic 35.0%
ATTTGTCATCAGGTGAAAAC+CGG + chr7_4:55483585-55483604 None:intergenic 35.0%
!! TGCTCTGAAAATTTGTCATC+AGG + chr7_4:55483595-55483614 None:intergenic 35.0%
GTTAAACTGAAGAAGCGATT+TGG - chr7_4:55483619-55483638 Msa1163980:intron 35.0%
! AAGTTCAACATTTGCCACTT+AGG + chr7_4:55483829-55483848 None:intergenic 35.0%
TGTTGAACTTCACTGATGAA+TGG - chr7_4:55483839-55483858 Msa1163980:CDS 35.0%
TTGCATACGTTGAAAAGTCA+GGG - chr7_4:55484004-55484023 Msa1163980:CDS 35.0%
AGAAGAAAGAAAACCTAGGA+TGG + chr7_4:55481908-55481927 None:intergenic 35.0%
! CTTTCTTCTGTTTCTCAACA+AGG - chr7_4:55481919-55481938 Msa1163980:three_prime_UTR 35.0%
! TTTTTCTACAGTGACAAGGT+TGG - chr7_4:55482025-55482044 Msa1163980:three_prime_UTR 35.0%
TGATTCAAGGTTTACCTTAG+TGG + chr7_4:55482113-55482132 None:intergenic 35.0%
CTAAGGTAAACCTTGAATCA+AGG - chr7_4:55482113-55482132 Msa1163980:three_prime_UTR 35.0%
TCAGCTAGAAACTTTGCATT+TGG - chr7_4:55482497-55482516 Msa1163980:intron 35.0%
GGATTTGCAATTGGATATAG+GGG - chr7_4:55482518-55482537 Msa1163980:intron 35.0%
! TAGGGGAGGTATACATAAAA+AGG - chr7_4:55482535-55482554 Msa1163980:intron 35.0%
AGAGAGATTCAAACATAGAG+AGG - chr7_4:55482597-55482616 Msa1163980:intron 35.0%
AGACAGACACATTTGAGAAT+AGG - chr7_4:55482642-55482661 Msa1163980:intron 35.0%
AGTGGACCATGAAAATGAAT+AGG + chr7_4:55482699-55482718 None:intergenic 35.0%
AATCGAAAACAAGGGATGAT+AGG + chr7_4:55482868-55482887 None:intergenic 35.0%
GGATTTGCAATCGAAAACAA+GGG + chr7_4:55482876-55482895 None:intergenic 35.0%
TGGATTTGCAATCGAAAACA+AGG + chr7_4:55482877-55482896 None:intergenic 35.0%
TCAATCTCCAAGGTAAAGTA+AGG + chr7_4:55482928-55482947 None:intergenic 35.0%
TTGTAACCAAAATCACTGTG+GGG + chr7_4:55483114-55483133 None:intergenic 35.0%
GTTGTAACCAAAATCACTGT+GGG + chr7_4:55483115-55483134 None:intergenic 35.0%
TGTTGTAACCAAAATCACTG+TGG + chr7_4:55483116-55483135 None:intergenic 35.0%
ACAACAAAAGAAGTAGACGA+GGG + chr7_4:55483247-55483266 None:intergenic 35.0%
AACAACAAAAGAAGTAGACG+AGG + chr7_4:55483248-55483267 None:intergenic 35.0%
ATTTGTCATCAGGTGAAAAC+CGG + chr7_4:55483585-55483604 None:intergenic 35.0%
!! TGCTCTGAAAATTTGTCATC+AGG + chr7_4:55483595-55483614 None:intergenic 35.0%
GTTAAACTGAAGAAGCGATT+TGG - chr7_4:55483619-55483638 Msa1163980:intron 35.0%
! AAGTTCAACATTTGCCACTT+AGG + chr7_4:55483829-55483848 None:intergenic 35.0%
TGTTGAACTTCACTGATGAA+TGG - chr7_4:55483839-55483858 Msa1163980:CDS 35.0%
TTGCATACGTTGAAAAGTCA+GGG - chr7_4:55484004-55484023 Msa1163980:CDS 35.0%
ATGAAGGAAGGAAGGGTTTA+AGG + chr7_4:55481869-55481888 None:intergenic 40.0%
AGAAAGAAAACCTAGGATGG+AGG + chr7_4:55481905-55481924 None:intergenic 40.0%
GAAAATTGGATGCGTGTCAT+TGG + chr7_4:55482445-55482464 None:intergenic 40.0%
TTTGCAATTGGATATAGGGG+AGG - chr7_4:55482521-55482540 Msa1163980:intron 40.0%
GATTCAAACATAGAGAGGTG+TGG - chr7_4:55482602-55482621 Msa1163980:intron 40.0%
GCACATTTGAGAATTGAGAG+TGG + chr7_4:55482717-55482736 None:intergenic 40.0%
GCAATGAGAATTAAGAGTGG+CGG + chr7_4:55482739-55482758 None:intergenic 40.0%
ATGGGTCGTGTTAGAAACTT+TGG + chr7_4:55482897-55482916 None:intergenic 40.0%
AAGCATGGACACATGAGTTT+CGG + chr7_4:55483079-55483098 None:intergenic 40.0%
! ATCTGATGCATTTTCCGTGT+TGG - chr7_4:55483209-55483228 Msa1163980:intron 40.0%
! TCTGATGCATTTTCCGTGTT+GGG - chr7_4:55483210-55483229 Msa1163980:intron 40.0%
!! GCACTCTTTTGATTCTGCAT+TGG - chr7_4:55483418-55483437 Msa1163980:intron 40.0%
TTTGTCATCAGGTGAAAACC+GGG + chr7_4:55483584-55483603 None:intergenic 40.0%
!! ATAGCTCAATACTTTGGAGC+TGG + chr7_4:55483664-55483683 None:intergenic 40.0%
! TGATTAGCAGCAGTCTTTTG+TGG - chr7_4:55483720-55483739 Msa1163980:intron 40.0%
! GGGAAAGATTTTCACGGAAT+GGG + chr7_4:55483796-55483815 None:intergenic 40.0%
! TGGGAAAGATTTTCACGGAA+TGG + chr7_4:55483797-55483816 None:intergenic 40.0%
TCCCAAATGTTAGACCTAAG+TGG - chr7_4:55483812-55483831 Msa1163980:CDS 40.0%
GCCACTTAGGTCTAACATTT+GGG + chr7_4:55483816-55483835 None:intergenic 40.0%
! TGCCACTTAGGTCTAACATT+TGG + chr7_4:55483817-55483836 None:intergenic 40.0%
GTTGCATACGTTGAAAAGTC+AGG - chr7_4:55484003-55484022 Msa1163980:CDS 40.0%
AGCATGAACACAAAACGAGT+AGG - chr7_4:55484038-55484057 Msa1163980:CDS 40.0%
GCATGAACACAAAACGAGTA+GGG - chr7_4:55484039-55484058 Msa1163980:CDS 40.0%
CATGAACACAAAACGAGTAG+GGG - chr7_4:55484040-55484059 Msa1163980:CDS 40.0%
ATGAAGGAAGGAAGGGTTTA+AGG + chr7_4:55481869-55481888 None:intergenic 40.0%
AGAAAGAAAACCTAGGATGG+AGG + chr7_4:55481905-55481924 None:intergenic 40.0%
GAAAATTGGATGCGTGTCAT+TGG + chr7_4:55482445-55482464 None:intergenic 40.0%
TTTGCAATTGGATATAGGGG+AGG - chr7_4:55482521-55482540 Msa1163980:intron 40.0%
GATTCAAACATAGAGAGGTG+TGG - chr7_4:55482602-55482621 Msa1163980:intron 40.0%
GCACATTTGAGAATTGAGAG+TGG + chr7_4:55482717-55482736 None:intergenic 40.0%
GCAATGAGAATTAAGAGTGG+CGG + chr7_4:55482739-55482758 None:intergenic 40.0%
ATGGGTCGTGTTAGAAACTT+TGG + chr7_4:55482897-55482916 None:intergenic 40.0%
AAGCATGGACACATGAGTTT+CGG + chr7_4:55483079-55483098 None:intergenic 40.0%
! ATCTGATGCATTTTCCGTGT+TGG - chr7_4:55483209-55483228 Msa1163980:intron 40.0%
! TCTGATGCATTTTCCGTGTT+GGG - chr7_4:55483210-55483229 Msa1163980:intron 40.0%
!! GCACTCTTTTGATTCTGCAT+TGG - chr7_4:55483418-55483437 Msa1163980:intron 40.0%
TTTGTCATCAGGTGAAAACC+GGG + chr7_4:55483584-55483603 None:intergenic 40.0%
!! ATAGCTCAATACTTTGGAGC+TGG + chr7_4:55483664-55483683 None:intergenic 40.0%
! TGATTAGCAGCAGTCTTTTG+TGG - chr7_4:55483720-55483739 Msa1163980:intron 40.0%
! GGGAAAGATTTTCACGGAAT+GGG + chr7_4:55483796-55483815 None:intergenic 40.0%
! TGGGAAAGATTTTCACGGAA+TGG + chr7_4:55483797-55483816 None:intergenic 40.0%
TCCCAAATGTTAGACCTAAG+TGG - chr7_4:55483812-55483831 Msa1163980:CDS 40.0%
GCCACTTAGGTCTAACATTT+GGG + chr7_4:55483816-55483835 None:intergenic 40.0%
! TGCCACTTAGGTCTAACATT+TGG + chr7_4:55483817-55483836 None:intergenic 40.0%
GTTGCATACGTTGAAAAGTC+AGG - chr7_4:55484003-55484022 Msa1163980:CDS 40.0%
AGCATGAACACAAAACGAGT+AGG - chr7_4:55484038-55484057 Msa1163980:CDS 40.0%
! CATCAACGATAACGGTGACA+AGG - chr7_4:55482081-55482100 Msa1163980:three_prime_UTR 45.0%
TGACAAGGTCTACACCACTA+AGG - chr7_4:55482096-55482115 Msa1163980:three_prime_UTR 45.0%
GATTGAGTAGCTAACCCAAG+CGG + chr7_4:55482221-55482240 None:intergenic 45.0%
! TGACACGCATCCAATTTTCG+AGG - chr7_4:55482446-55482465 Msa1163980:intron 45.0%
CTAGAGGGATACGTTGAACA+TGG + chr7_4:55482784-55482803 None:intergenic 45.0%
!! GGGAAAAGGTCTTTGAAGCA+TGG + chr7_4:55483094-55483113 None:intergenic 45.0%
CCAAAATCACTGTGGGGAAA+AGG + chr7_4:55483108-55483127 None:intergenic 45.0%
! CCTTTTCCCCACAGTGATTT+TGG - chr7_4:55483105-55483124 Msa1163980:intron 45.0%
! CTGATGCATTTTCCGTGTTG+GGG - chr7_4:55483211-55483230 Msa1163980:intron 45.0%
GGTTTATAGAAGCCCCAACA+CGG + chr7_4:55483226-55483245 None:intergenic 45.0%
!! ATACTTTGGAGCTGGATGCT+GGG + chr7_4:55483656-55483675 None:intergenic 45.0%
!! AATACTTTGGAGCTGGATGC+TGG + chr7_4:55483657-55483676 None:intergenic 45.0%
AGACTGCTGCTAATCACCAA+AGG + chr7_4:55483716-55483735 None:intergenic 45.0%
ACGTTGAAAAGTCAGGGAGA+AGG - chr7_4:55484010-55484029 Msa1163980:CDS 45.0%
! CATCAACGATAACGGTGACA+AGG - chr7_4:55482081-55482100 Msa1163980:three_prime_UTR 45.0%
TGACAAGGTCTACACCACTA+AGG - chr7_4:55482096-55482115 Msa1163980:three_prime_UTR 45.0%
GATTGAGTAGCTAACCCAAG+CGG + chr7_4:55482221-55482240 None:intergenic 45.0%
! TGACACGCATCCAATTTTCG+AGG - chr7_4:55482446-55482465 Msa1163980:intron 45.0%
CTAGAGGGATACGTTGAACA+TGG + chr7_4:55482784-55482803 None:intergenic 45.0%
!! GGGAAAAGGTCTTTGAAGCA+TGG + chr7_4:55483094-55483113 None:intergenic 45.0%
CCAAAATCACTGTGGGGAAA+AGG + chr7_4:55483108-55483127 None:intergenic 45.0%
! CCTTTTCCCCACAGTGATTT+TGG - chr7_4:55483105-55483124 Msa1163980:intron 45.0%
! CTGATGCATTTTCCGTGTTG+GGG - chr7_4:55483211-55483230 Msa1163980:intron 45.0%
GGTTTATAGAAGCCCCAACA+CGG + chr7_4:55483226-55483245 None:intergenic 45.0%
!! ATACTTTGGAGCTGGATGCT+GGG + chr7_4:55483656-55483675 None:intergenic 45.0%
!! AATACTTTGGAGCTGGATGC+TGG + chr7_4:55483657-55483676 None:intergenic 45.0%
AGACTGCTGCTAATCACCAA+AGG + chr7_4:55483716-55483735 None:intergenic 45.0%
ACGTTGAAAAGTCAGGGAGA+AGG - chr7_4:55484010-55484029 Msa1163980:CDS 45.0%
ACCAGCGATGAAGGAAGGAA+GGG + chr7_4:55481876-55481895 None:intergenic 50.0%
AACCAGCGATGAAGGAAGGA+AGG + chr7_4:55481877-55481896 None:intergenic 50.0%
GAAGAACCAGCGATGAAGGA+AGG + chr7_4:55481881-55481900 None:intergenic 50.0%
TTGCAGAAAGAGTCACCGCT+TGG - chr7_4:55482203-55482222 Msa1163980:three_prime_UTR 50.0%
TGCAGAAAGAGTCACCGCTT+GGG - chr7_4:55482204-55482223 Msa1163980:three_prime_UTR 50.0%
GCTACTCAATCTGCTCATCC+AGG - chr7_4:55482230-55482249 Msa1163980:exon 50.0%
TCAACACGCGTCAATCTCCA+AGG + chr7_4:55482938-55482957 None:intergenic 50.0%
TGGAGATTGACGCGTGTTGA+TGG - chr7_4:55482938-55482957 Msa1163980:intron 50.0%
! TGTTTTCCGAAACTGCAGCC+CGG - chr7_4:55483563-55483582 Msa1163980:intron 50.0%
TGAAAACCGGGCTGCAGTTT+CGG + chr7_4:55483572-55483591 None:intergenic 50.0%
ACCAGCGATGAAGGAAGGAA+GGG + chr7_4:55481876-55481895 None:intergenic 50.0%
AACCAGCGATGAAGGAAGGA+AGG + chr7_4:55481877-55481896 None:intergenic 50.0%
GAAGAACCAGCGATGAAGGA+AGG + chr7_4:55481881-55481900 None:intergenic 50.0%
TTGCAGAAAGAGTCACCGCT+TGG - chr7_4:55482203-55482222 Msa1163980:three_prime_UTR 50.0%
TGCAGAAAGAGTCACCGCTT+GGG - chr7_4:55482204-55482223 Msa1163980:three_prime_UTR 50.0%
GCTACTCAATCTGCTCATCC+AGG - chr7_4:55482230-55482249 Msa1163980:exon 50.0%
TCAACACGCGTCAATCTCCA+AGG + chr7_4:55482938-55482957 None:intergenic 50.0%
TGGAGATTGACGCGTGTTGA+TGG - chr7_4:55482938-55482957 Msa1163980:intron 50.0%
! TGTTTTCCGAAACTGCAGCC+CGG - chr7_4:55483563-55483582 Msa1163980:intron 50.0%
TGAAAACCGGGCTGCAGTTT+CGG + chr7_4:55483572-55483591 None:intergenic 50.0%
ACCCTTCCTTCCTTCATCGC+TGG - chr7_4:55481872-55481891 Msa1163980:three_prime_UTR 55.0%
AGGCGAAGAACCAGCGATGA+AGG + chr7_4:55481885-55481904 None:intergenic 55.0%
TGGTTCTTCGCCTCCATCCT+AGG - chr7_4:55481892-55481911 Msa1163980:three_prime_UTR 55.0%
! TTTGGAGCTGGATGCTGGGT+TGG + chr7_4:55483652-55483671 None:intergenic 55.0%
ACCCTTCCTTCCTTCATCGC+TGG - chr7_4:55481872-55481891 Msa1163980:three_prime_UTR 55.0%
AGGCGAAGAACCAGCGATGA+AGG + chr7_4:55481885-55481904 None:intergenic 55.0%
TGGTTCTTCGCCTCCATCCT+AGG - chr7_4:55481892-55481911 Msa1163980:three_prime_UTR 55.0%
! TTTGGAGCTGGATGCTGGGT+TGG + chr7_4:55483652-55483671 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 55481858 55484061 55481858 ID=Msa1163980;Name=Msa1163980
chr7_4 mRNA 55481858 55484061 55481858 ID=Msa1163980-mRNA-1;Parent=Msa1163980;Name=Msa1163980-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.75|1|0.66|0.5|4|383|101
chr7_4 exon 55481858 55482338 55481858 ID=Msa1163980-mRNA-1:exon:16194;Parent=Msa1163980-mRNA-1
chr7_4 exon 55483668 55483710 55483668 ID=Msa1163980-mRNA-1:exon:16193;Parent=Msa1163980-mRNA-1
chr7_4 exon 55483802 55483883 55483802 ID=Msa1163980-mRNA-1:exon:16192;Parent=Msa1163980-mRNA-1
chr7_4 exon 55483979 55484061 55483979 ID=Msa1163980-mRNA-1:exon:16191;Parent=Msa1163980-mRNA-1
chr7_4 CDS 55483979 55484061 55483979 ID=Msa1163980-mRNA-1:cds;Parent=Msa1163980-mRNA-1
chr7_4 CDS 55483802 55483883 55483802 ID=Msa1163980-mRNA-1:cds;Parent=Msa1163980-mRNA-1
chr7_4 CDS 55483668 55483710 55483668 ID=Msa1163980-mRNA-1:cds;Parent=Msa1163980-mRNA-1
chr7_4 CDS 55482241 55482338 55482241 ID=Msa1163980-mRNA-1:cds;Parent=Msa1163980-mRNA-1
chr7_4 three_prime_UTR 55481858 55482240 55481858 ID=Msa1163980-mRNA-1:three_prime_utr;Parent=Msa1163980-mRNA-1
Gene Sequence

>Msa1163980

GTAAACAACCTTAAACCCTTCCTTCCTTCATCGCTGGTTCTTCGCCTCCATCCTAGGTTTTCTTTCTTCTGTTTCTCAACAAGTGACAAGGTTGGTTGTTTCAGTGTAACCATGTATCTTCAGTTTTACATCAACGATAACGGTGACAAGGTCTACACCACTAAGAAAGAGTCACCGCTTGGGTTAGCTACTCAATCTGCTCATCCAGCCCGGTTTTCACCTGATGACAAATTTTCAGAGCAGAGAGTTAAACTGAAGAAGCGATTTGGACTGTTACCAACCCAGCATCCAGCTCCAAAGTATTGA
Protein sequence

>Msa1163980

VNNLKPFLPSSLVLRLHPRFSFFCFSTSDKVGCFSVTMYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKFSEQRVKLKKRFGLLPTQHPAPKY*