Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756030 | sp|B5X4Z4|NAGS2_ARATH | 66.389 | 601 | 180 | 8 | 15 | 601 | 18 | 610 | 0.0 | 797 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756030 | G7K2G8 | 97.377 | 610 | 14 | 2 | 1 | 609 | 1 | 609 | 0.0 | 1215 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0756030 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046100 | Msa0756030 | 0.802663 | 5.041121e-49 | -8.615850e-47 |
| Msa0627910 | Msa0756030 | 0.806742 | 7.097351e-50 | -8.615850e-47 |
| Msa0713790 | Msa0756030 | 0.933232 | 2.565942e-95 | -8.615850e-47 |
| Msa0756030 | Msa0775260 | 0.811002 | 8.703663e-51 | -8.615850e-47 |
| Msa0756030 | Msa0837660 | 0.914305 | 2.239590e-84 | -8.615850e-47 |
| Msa0756030 | Msa0853170 | 0.810084 | 1.374211e-50 | -8.615850e-47 |
| Msa0756030 | Msa0937670 | 0.800458 | 1.427950e-48 | -8.615850e-47 |
| Msa0756030 | Msa1109570 | 0.809921 | 1.489499e-50 | -8.615850e-47 |
| Msa0756030 | Msa1116130 | -0.813265 | 2.793161e-51 | -8.615850e-47 |
| Msa0756030 | Msa1206020 | 0.801614 | 8.285310e-49 | -8.615850e-47 |
| Msa0756030 | Msa1228210 | 0.802020 | 6.837832e-49 | -8.615850e-47 |
| Msa0756030 | Msa1271280 | 0.817116 | 3.896124e-52 | -8.615850e-47 |
| Msa0756030 | Msa1288170 | 0.802204 | 6.267085e-49 | -8.615850e-47 |
| Msa0756030 | Msa1303720 | 0.821962 | 3.054693e-53 | -8.615850e-47 |
| Msa0756030 | Msa1303780 | 0.819700 | 1.011935e-52 | -8.615850e-47 |
| Msa0756030 | Msa1363120 | 0.838269 | 3.178493e-57 | -8.615850e-47 |
| Msa0756030 | Msa1408790 | 0.806751 | 7.063524e-50 | -8.615850e-47 |
| Msa0378340 | Msa0756030 | 0.814322 | 1.634291e-51 | -8.615850e-47 |
| Msa0427690 | Msa0756030 | 0.810837 | 9.449858e-51 | -8.615850e-47 |
| Msa0270270 | Msa0756030 | 0.800944 | 1.136269e-48 | -8.615850e-47 |
| Msa0275600 | Msa0756030 | 0.800401 | 1.466254e-48 | -8.615850e-47 |
| Msa0298390 | Msa0756030 | -0.809020 | 2.326054e-50 | -8.615850e-47 |
| Msa0518520 | Msa0756030 | 0.807811 | 4.212669e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756030 | MtrunA17_Chr5g0401051 | 95.574 | 610 | 14 | 3 | 1 | 609 | 1 | 598 | 0.0 | 1186 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756030 | AT4G37670.2 | 66.389 | 601 | 180 | 8 | 15 | 601 | 18 | 610 | 0.0 | 797 |
| Msa0756030 | AT2G22910.1 | 70.209 | 527 | 154 | 2 | 78 | 601 | 75 | 601 | 0.0 | 768 |
| Msa0756030 | AT4G37670.1 | 65.226 | 532 | 163 | 8 | 15 | 532 | 18 | 541 | 0.0 | 681 |
Find 158 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGTTGATAGTCCTTCTT+TGG | 0.228015 | 5_2:+10039233 | Msa0756030:CDS |
| ACAGCTTGTGCCTTGGCAAT+TGG | 0.248266 | 5_2:+10040963 | Msa0756030:CDS |
| GATGAAGTGGTGAAGTTGAT+AGG | 0.250695 | 5_2:-10038958 | None:intergenic |
| ACAGTAATTCCACTCTTATT+TGG | 0.256128 | 5_2:-10043545 | None:intergenic |
| TCTCCTCAGGGTAAGGAAAA+AGG | 0.290072 | 5_2:-10042587 | None:intergenic |
| CAGCTTGTGCCTTGGCAATT+GGG | 0.298414 | 5_2:+10040964 | Msa0756030:CDS |
| ATCCACTTTGTTATTGTTCC+TGG | 0.304270 | 5_2:+10039580 | Msa0756030:CDS |
| GGTCCAATACTTGATGAAAA+TGG | 0.316810 | 5_2:+10041014 | Msa0756030:CDS |
| GACAACATTCTCAAAGATAA+AGG | 0.329004 | 5_2:+10039619 | Msa0756030:CDS |
| AGCGAGCAAGGCTTTGCTAT+TGG | 0.336026 | 5_2:+10041278 | Msa0756030:CDS |
| TTAAAATTGTTATGCTCAAC+AGG | 0.336039 | 5_2:-10041152 | None:intergenic |
| TGAAATATGTGCAGATTATA+TGG | 0.338432 | 5_2:+10043175 | Msa0756030:intron |
| CAAACAACTTATTCAGCCTT+TGG | 0.343314 | 5_2:+10042350 | Msa0756030:CDS |
| TAAAGGAGCGAGGTTTGAAT+TGG | 0.357227 | 5_2:-10039023 | None:intergenic |
| TTGGAATTGTTTACAAGAGA+TGG | 0.378945 | 5_2:+10041726 | Msa0756030:CDS |
| TTCGTTCCCTTCGTGAAGCT+TGG | 0.379069 | 5_2:+10039157 | Msa0756030:CDS |
| AGCTGCTATTTCACTTTGCT+CGG | 0.382328 | 5_2:-10041093 | None:intergenic |
| TTGTTGGATGGCACTATTAG+TGG | 0.387463 | 5_2:+10041693 | Msa0756030:CDS |
| GCAGTCAAATCTCCACCTAA+TGG | 0.388073 | 5_2:+10041179 | Msa0756030:CDS |
| TGCCCTTGGCCACGGCAATC+AGG | 0.388955 | 5_2:-10042642 | None:intergenic |
| GGAATTGATTATGGGTCAAC+TGG | 0.390661 | 5_2:+10040539 | Msa0756030:CDS |
| CATATAATACTTAGAATTGC+GGG | 0.398277 | 5_2:-10043510 | None:intergenic |
| TTTGAGAATGGAGATGGCTT+AGG | 0.403018 | 5_2:+10041251 | Msa0756030:CDS |
| TCGAGCTACAAGATTGTTAC+GGG | 0.407532 | 5_2:-10043673 | None:intergenic |
| TTTGGAGGCATGTGGCATAC+TGG | 0.410523 | 5_2:+10042368 | Msa0756030:CDS |
| TGATTGCCGTGGCCAAGGGC+AGG | 0.426100 | 5_2:+10042644 | Msa0756030:CDS |
| ATGACTAAGGTTTGAATTGT+GGG | 0.427626 | 5_2:-10043788 | None:intergenic |
| GCAATTTGTCTCCCTGCCCT+TGG | 0.430775 | 5_2:-10042656 | None:intergenic |
| TTTCACGCCGCCGTGCCGCT+TGG | 0.435024 | 5_2:-10038845 | None:intergenic |
| ACCTCTGCACACTTCTCCTC+AGG | 0.437888 | 5_2:-10042600 | None:intergenic |
| GTGGTCGGTGGAATTGATTA+TGG | 0.441744 | 5_2:+10040530 | Msa0756030:CDS |
| GTTGGATAATTTCGTTGTTG+TGG | 0.449871 | 5_2:+10042533 | Msa0756030:CDS |
| TTCTTTCTCCAGCACCTATG+AGG | 0.453361 | 5_2:+10040935 | Msa0756030:intron |
| TCAATTTGCACATGGGTGCC+AGG | 0.453790 | 5_2:-10039598 | None:intergenic |
| ACAAGCTGTTGCAACCTCAT+AGG | 0.454255 | 5_2:-10040949 | None:intergenic |
| ATGTCTACGAATATTGCATA+TGG | 0.454955 | 5_2:-10040312 | None:intergenic |
| TTGTAGCTCGAATCTGTGTT+TGG | 0.456577 | 5_2:+10043685 | Msa0756030:three_prime_UTR |
| CATTGCCGCTTAACACTCAA+TGG | 0.457210 | 5_2:+10038897 | Msa0756030:exon |
| ATTCAATACTTCACCAGAGC+TGG | 0.458082 | 5_2:-10040645 | None:intergenic |
| GAACGTCTAAGTCGAATGAA+TGG | 0.458588 | 5_2:+10041308 | Msa0756030:CDS |
| GTGAAAGCGGTTGAGGAAGA+AGG | 0.459644 | 5_2:+10041122 | Msa0756030:CDS |
| GTGGTGAAGTTGATAGGGTT+TGG | 0.465407 | 5_2:-10038952 | None:intergenic |
| CGCATGCGTGAGAGACTTGA+TGG | 0.466167 | 5_2:+10040587 | Msa0756030:CDS |
| GAGAAGAAAGCAGCATCTCT+TGG | 0.466675 | 5_2:+10043197 | Msa0756030:CDS |
| GGTTCAAAGAGTTCACTTGT+TGG | 0.467382 | 5_2:+10041677 | Msa0756030:CDS |
| TTCGAGCTACAAGATTGTTA+CGG | 0.468888 | 5_2:-10043674 | None:intergenic |
| TCTCCTGATTGCCGTGGCCA+AGG | 0.471147 | 5_2:+10042639 | Msa0756030:CDS |
| TTGAGAATGGAGATGGCTTA+GGG | 0.472572 | 5_2:+10041252 | Msa0756030:CDS |
| TCGAATCTGTGTTTGGTACC+AGG | 0.482437 | 5_2:+10043692 | Msa0756030:three_prime_UTR |
| ATGAAGTGGTGAAGTTGATA+GGG | 0.485825 | 5_2:-10038957 | None:intergenic |
| GGAGCAAGGCTAAGTATGTT+GGG | 0.485838 | 5_2:+10040192 | Msa0756030:CDS |
| TAACTATGTGAAAGCGGTTG+AGG | 0.486501 | 5_2:+10041115 | Msa0756030:CDS |
| AAGAGTGGAATTACTGTTGG+TGG | 0.488225 | 5_2:+10043551 | Msa0756030:CDS |
| GAATGGGTACCTGTCAGAAT+TGG | 0.488645 | 5_2:+10041325 | Msa0756030:CDS |
| GGGAGCAAGGCTAAGTATGT+TGG | 0.490609 | 5_2:+10040191 | Msa0756030:intron |
| TGGTAACTTTCTTGCAGCCA+AGG | 0.491225 | 5_2:+10040379 | Msa0756030:CDS |
| AGCTTGTGCCTTGGCAATTG+GGG | 0.494564 | 5_2:+10040965 | Msa0756030:CDS |
| CAAGAGGCAAGAAACGAATC+AGG | 0.494769 | 5_2:-10041040 | None:intergenic |
| GCACACTTCTCCTCAGGGTA+AGG | 0.495453 | 5_2:-10042594 | None:intergenic |
| TTCTTTGGATCCCATTCTCA+AGG | 0.495609 | 5_2:+10039248 | Msa0756030:CDS |
| CATGACTAAGGTTTGAATTG+TGG | 0.496054 | 5_2:-10043789 | None:intergenic |
| AACGCTGCAATGTGTGCAGC+AGG | 0.498191 | 5_2:+10040245 | Msa0756030:CDS |
| AAGTTAATATGCGTTATAGA+TGG | 0.498769 | 5_2:+10040993 | Msa0756030:CDS |
| CAAAGAGTTCACTTGTTGGA+TGG | 0.500446 | 5_2:+10041681 | Msa0756030:CDS |
| ACAACTTATTCAGCCTTTGG+AGG | 0.501598 | 5_2:+10042353 | Msa0756030:CDS |
| CTCCTGATTGCCGTGGCCAA+GGG | 0.501830 | 5_2:+10042640 | Msa0756030:CDS |
| CTACGATAAGCGAGAAGATA+AGG | 0.502922 | 5_2:-10039180 | None:intergenic |
| AACATGTCTGCTTCTTCAAG+AGG | 0.505053 | 5_2:-10041056 | None:intergenic |
| ATTGTTTACAAGAGATGGGA+TGG | 0.511266 | 5_2:+10041731 | Msa0756030:CDS |
| TGTCTCCCTGCCCTTGGCCA+CGG | 0.513144 | 5_2:-10042650 | None:intergenic |
| CATTGAGTGTTAAGCGGCAA+TGG | 0.513662 | 5_2:-10038896 | None:intergenic |
| TGCATGCCTTGCCTTGAGAA+TGG | 0.515106 | 5_2:-10039259 | None:intergenic |
| TTTGAATTGTGGGCAGGACA+AGG | 0.516611 | 5_2:-10043778 | None:intergenic |
| AACGTCTAAGTCGAATGAAT+GGG | 0.522685 | 5_2:+10041309 | Msa0756030:CDS |
| TGGAATTGTTTACAAGAGAT+GGG | 0.523017 | 5_2:+10041727 | Msa0756030:CDS |
| AACTTGGGCTACTCCAGCTC+TGG | 0.523097 | 5_2:+10040632 | Msa0756030:CDS |
| CTGCTGTACGTGTTGTAAGT+AGG | 0.526017 | 5_2:-10043235 | None:intergenic |
| GGATGGGAACAATGGTGGCT+AGG | 0.526598 | 5_2:+10041748 | Msa0756030:CDS |
| GGTAAGTGTGATTGGAAGCA+TGG | 0.528087 | 5_2:+10043618 | Msa0756030:three_prime_UTR |
| TTCGTTGTTGTGGAAAGAGA+AGG | 0.528576 | 5_2:+10042543 | Msa0756030:CDS |
| GAGCAAGGCTTTGCTATTGG+AGG | 0.529772 | 5_2:+10041281 | Msa0756030:CDS |
| TGGTCGGTGGAATTGATTAT+GGG | 0.530856 | 5_2:+10040531 | Msa0756030:CDS |
| AATTGGAGATTAAGTTGTTG+AGG | 0.531209 | 5_2:-10039006 | None:intergenic |
| GCATGCCTTGCCTTGAGAAT+GGG | 0.531576 | 5_2:-10039258 | None:intergenic |
| TGAAGTTGATAGGGTTTGGA+AGG | 0.532697 | 5_2:-10038948 | None:intergenic |
| GTATAGAGGCGCGATAAAGA+AGG | 0.534931 | 5_2:-10038922 | None:intergenic |
| CTGCAGCAGCCAATTCTGAC+AGG | 0.535179 | 5_2:-10041334 | None:intergenic |
| GATTGCCGTGGCCAAGGGCA+GGG | 0.536027 | 5_2:+10042645 | Msa0756030:CDS |
| CTTGACAGGTTTGTGAGGCG+TGG | 0.536755 | 5_2:+10043428 | Msa0756030:intron |
| CTAAGGTTTGAATTGTGGGC+AGG | 0.541457 | 5_2:-10043784 | None:intergenic |
| ATAGCAGCTAAACTTTCAGT+TGG | 0.541876 | 5_2:+10040284 | Msa0756030:CDS |
| GCAACTTTCCACAATGGTGT+TGG | 0.543734 | 5_2:+10041227 | Msa0756030:CDS |
| TTGAGAATGGGATCCAAAGA+AGG | 0.547593 | 5_2:-10039246 | None:intergenic |
| TCATATAATACTTAGAATTG+CGG | 0.547939 | 5_2:-10043511 | None:intergenic |
| TTTATAGCTGCTACAAACGT+TGG | 0.550580 | 5_2:+10042515 | Msa0756030:intron |
| CACAATTCAAACCTTAGTCA+TGG | 0.553441 | 5_2:+10043790 | Msa0756030:three_prime_UTR |
| GAGGATTGAAGTGAGAGTAT+TGG | 0.555417 | 5_2:-10038987 | None:intergenic |
| ACTCCTCAACTCCATGACTA+AGG | 0.559553 | 5_2:-10043801 | None:intergenic |
| GGCTTAGGGACTAGCGAGCA+AGG | 0.560101 | 5_2:+10041266 | Msa0756030:CDS |
| TTACAACACGTACAGCAGAT+TGG | 0.561074 | 5_2:+10043240 | Msa0756030:CDS |
| CAATAACAAAGTGGATTCCA+AGG | 0.563812 | 5_2:-10039573 | None:intergenic |
| GGGCAGGGAGACAAATTGCT+TGG | 0.563989 | 5_2:+10042660 | Msa0756030:CDS |
| GTGAACGGAATCACTGAAGA+AGG | 0.566221 | 5_2:+10039114 | Msa0756030:CDS |
| AGAAATGACGAGAACAAAAG+TGG | 0.566415 | 5_2:-10039205 | None:intergenic |
| ATGGAAAACGCATTACAGAA+TGG | 0.566481 | 5_2:+10041198 | Msa0756030:CDS |
| GGTTTGGAAGGGAAGTATAG+AGG | 0.566532 | 5_2:-10038936 | None:intergenic |
| TTGTGCCTTGGCAATTGGGG+CGG | 0.568264 | 5_2:+10040968 | Msa0756030:CDS |
| AACTTCTTGACAGGTTTGTG+AGG | 0.570293 | 5_2:+10043423 | Msa0756030:intron |
| AGACATGTTAATTCGCAAGC+GGG | 0.573614 | 5_2:+10041070 | Msa0756030:CDS |
| GAATTGATTATGGGTCAACT+GGG | 0.574055 | 5_2:+10040540 | Msa0756030:CDS |
| GGTTAAGCGGTCTGATGAAG+AGG | 0.575532 | 5_2:+10042389 | Msa0756030:CDS |
| TTGAACAACGAAGGAGTGAA+CGG | 0.576908 | 5_2:+10039099 | Msa0756030:CDS |
| GTAAGTGTGATTGGAAGCAT+GGG | 0.577212 | 5_2:+10043619 | Msa0756030:three_prime_UTR |
| CAGAGAAGAGGGGTGGTCGG+TGG | 0.577629 | 5_2:+10040518 | Msa0756030:intron |
| AGCAGCTAACTATGTGAAAG+CGG | 0.584271 | 5_2:+10041109 | Msa0756030:CDS |
| ACAAATTTGTCCAAGCGGCA+CGG | 0.586516 | 5_2:+10038835 | Msa0756030:five_prime_UTR |
| AATAAGAGTGGAATTACTGT+TGG | 0.587427 | 5_2:+10043548 | Msa0756030:CDS |
| CTTGTCCGCCCCAATTGCCA+AGG | 0.592760 | 5_2:-10040973 | None:intergenic |
| TGACAGAGAAGAGGGGTGGT+CGG | 0.595410 | 5_2:+10040515 | Msa0756030:intron |
| TTGAATTGTGGGCAGGACAA+GGG | 0.600713 | 5_2:-10043777 | None:intergenic |
| ATTCAGCCTTTGGAGGCATG+TGG | 0.604861 | 5_2:+10042360 | Msa0756030:CDS |
| AACGAGGAATTAAAGGAGCG+AGG | 0.605298 | 5_2:-10039033 | None:intergenic |
| ATATGCAATATTCGTAGACA+TGG | 0.605536 | 5_2:+10040314 | Msa0756030:CDS |
| ACAACAGATTTACAATACAA+AGG | 0.606913 | 5_2:-10043735 | None:intergenic |
| GGTTGCAACAGCTTGTGCCT+TGG | 0.608428 | 5_2:+10040956 | Msa0756030:CDS |
| CTACGAATATTGCATATGGA+AGG | 0.610959 | 5_2:-10040308 | None:intergenic |
| AAGAGATGGGATGGGAACAA+TGG | 0.612647 | 5_2:+10041740 | Msa0756030:CDS |
| TTGTTTACAAGAGATGGGAT+GGG | 0.612686 | 5_2:+10041732 | Msa0756030:CDS |
| GTATTGGCGAGAAGATGAAG+TGG | 0.613696 | 5_2:-10038971 | None:intergenic |
| CGCAATGCGTTGAACAACGA+AGG | 0.616719 | 5_2:+10039090 | Msa0756030:CDS |
| TACTGCGTTTACAGGGAGCA+AGG | 0.617201 | 5_2:+10040178 | Msa0756030:intron |
| GAAGTTGATAGGGTTTGGAA+GGG | 0.618757 | 5_2:-10038947 | None:intergenic |
| TCTCAAAACCAACACCATTG+TGG | 0.620130 | 5_2:-10041235 | None:intergenic |
| AAGCTTCTACCAAATAAGAG+TGG | 0.625840 | 5_2:+10043536 | Msa0756030:CDS |
| AGATGGGATGGGAACAATGG+TGG | 0.628080 | 5_2:+10041743 | Msa0756030:CDS |
| GAATGTTGTCAATTTGCACA+TGG | 0.630324 | 5_2:-10039606 | None:intergenic |
| AGAGCTGGAGTAGCCCAAGT+TGG | 0.630783 | 5_2:-10040630 | None:intergenic |
| AGTATGCCACATGCCTCCAA+AGG | 0.632526 | 5_2:-10042366 | None:intergenic |
| CATGTGGCATACTGGTTAAG+CGG | 0.633218 | 5_2:+10042376 | Msa0756030:CDS |
| CAGACATGTTAATTCGCAAG+CGG | 0.635149 | 5_2:+10041069 | Msa0756030:CDS |
| GCAGTATCTCCTGATTGCCG+TGG | 0.635516 | 5_2:+10042633 | Msa0756030:CDS |
| TGAGTGTTAAGCGGCAATGG+CGG | 0.637764 | 5_2:-10038893 | None:intergenic |
| GAAGGTCAAATAATTGCATG+TGG | 0.638311 | 5_2:+10042561 | Msa0756030:CDS |
| AATGCTACATGTCGAAGACC+TGG | 0.640649 | 5_2:-10043710 | None:intergenic |
| CCTCTGCACACTTCTCCTCA+GGG | 0.642147 | 5_2:-10042599 | None:intergenic |
| AAGCAACAAATTTGTCCAAG+CGG | 0.643686 | 5_2:+10038830 | Msa0756030:five_prime_UTR |
| GCTGCAATGTGTGCAGCAGG+AGG | 0.644204 | 5_2:+10040248 | Msa0756030:CDS |
| CCCTGAGGAGAAGTGTGCAG+AGG | 0.655036 | 5_2:+10042599 | Msa0756030:CDS |
| GGTCAAATAATTGCATGTGG+TGG | 0.656987 | 5_2:+10042564 | Msa0756030:CDS |
| GTTAGTGTCAGTGTTACAAG+TGG | 0.659841 | 5_2:+10040359 | Msa0756030:CDS |
| TGCCAGGAACAATAACAAAG+TGG | 0.667425 | 5_2:-10039582 | None:intergenic |
| AGGAGCCATTGAGTGTTAAG+CGG | 0.669047 | 5_2:-10038902 | None:intergenic |
| CATAATGCAACTTTCCACAA+TGG | 0.674650 | 5_2:+10041221 | Msa0756030:CDS |
| ATAAGGCCAAGCTTCACGAA+GGG | 0.694309 | 5_2:-10039163 | None:intergenic |
| AATGTTGTCAATTTGCACAT+GGG | 0.704234 | 5_2:-10039605 | None:intergenic |
| AATTTGTCCAAGCGGCACGG+CGG | 0.732755 | 5_2:+10038838 | Msa0756030:five_prime_UTR |
| AATTGATTATGGGTCAACTG+GGG | 0.744930 | 5_2:+10040541 | Msa0756030:CDS |
| ATGCGTGAGAGACTTGATGG+TGG | 0.746452 | 5_2:+10040590 | Msa0756030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTATATTAAAAAGATG+TGG | - | chr5_2:10043151-10043170 | None:intergenic | 10.0% |
| !! | ATTAAAACAATAAAAGCAAA+AGG | - | chr5_2:10039457-10039476 | None:intergenic | 15.0% |
| !!! | AATTAGAAACAATTTTTGTT+TGG | + | chr5_2:10039730-10039749 | Msa0756030:intron | 15.0% |
| !! | GAAAATTAAAAGATATAACA+TGG | - | chr5_2:10041380-10041399 | None:intergenic | 15.0% |
| !! | TTGAAATTATTTGTAAATGA+TGG | + | chr5_2:10042703-10042722 | Msa0756030:intron | 15.0% |
| !!! | TAATAATTTGTTCTATGTAT+TGG | + | chr5_2:10042741-10042760 | Msa0756030:intron | 15.0% |
| !!! | AATAATTTGTTCTATGTATT+GGG | + | chr5_2:10042742-10042761 | Msa0756030:intron | 15.0% |
| !!! | TTGCTATTTTCTTTTTTGTT+AGG | + | chr5_2:10039289-10039308 | Msa0756030:intron | 20.0% |
| !! | AATTAGAATGAATTCAATTC+TGG | - | chr5_2:10039340-10039359 | None:intergenic | 20.0% |
| !! | TCAAAGAAGTGATTATATTT+AGG | + | chr5_2:10039980-10039999 | Msa0756030:intron | 20.0% |
| !! | CAAAGAAGTGATTATATTTA+GGG | + | chr5_2:10039981-10040000 | Msa0756030:intron | 20.0% |
| !!! | TATAGTTATTTTAACCAACT+TGG | + | chr5_2:10040616-10040635 | Msa0756030:CDS | 20.0% |
| !!! | ATAGTTATTTTAACCAACTT+GGG | + | chr5_2:10040617-10040636 | Msa0756030:CDS | 20.0% |
| !!! | TTCTAAACTTTTAAGTATGT+GGG | - | chr5_2:10042229-10042248 | None:intergenic | 20.0% |
| !!! | TTTCTAAACTTTTAAGTATG+TGG | - | chr5_2:10042230-10042249 | None:intergenic | 20.0% |
| !!! | AATTATTTGTAAATGATGGA+TGG | + | chr5_2:10042707-10042726 | Msa0756030:intron | 20.0% |
| !!! | TGTATAATTTTAATCATCGA+AGG | + | chr5_2:10043103-10043122 | Msa0756030:intron | 20.0% |
| !!! | AAGACAAGTTTTTTGTTTAA+AGG | + | chr5_2:10043330-10043349 | Msa0756030:intron | 20.0% |
| !!! | ATTGTTTTCTTTTTCTTTTC+AGG | - | chr5_2:10043482-10043501 | None:intergenic | 20.0% |
| !! | TCATATAATACTTAGAATTG+CGG | - | chr5_2:10043514-10043533 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTTTGTTAGGTTC+TGG | + | chr5_2:10039295-10039314 | Msa0756030:intron | 25.0% |
| ! | TTAGTAACAGTAATGTTTCT+GGG | + | chr5_2:10039525-10039544 | Msa0756030:intron | 25.0% |
| ! | TCAGTAGATAAGTTCAAATA+AGG | - | chr5_2:10039675-10039694 | None:intergenic | 25.0% |
| !! | TTAAGCACTTAATACTGTTT+TGG | + | chr5_2:10039696-10039715 | Msa0756030:intron | 25.0% |
| ! | AATAAGCTGAAAAAAGCTTA+TGG | - | chr5_2:10039785-10039804 | None:intergenic | 25.0% |
| ! | TGAATCATAAAATCAAACCT+TGG | - | chr5_2:10040399-10040418 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGACAGAGAAG+AGG | + | chr5_2:10040506-10040525 | Msa0756030:intron | 25.0% |
| !!! | TTTTTTTTTGACAGAGAAGA+GGG | + | chr5_2:10040507-10040526 | Msa0756030:intron | 25.0% |
| !!! | ATCTGATATGTACTTTTTCT+AGG | + | chr5_2:10040793-10040812 | Msa0756030:intron | 25.0% |
| ! | AAGTTAATATGCGTTATAGA+TGG | + | chr5_2:10040993-10041012 | Msa0756030:CDS | 25.0% |
| ! | TTAAAATTGTTATGCTCAAC+AGG | - | chr5_2:10041155-10041174 | None:intergenic | 25.0% |
| !! | GTTGAGCATAACAATTTTAA+CGG | + | chr5_2:10041155-10041174 | Msa0756030:CDS | 25.0% |
| !!! | TTGAGCATAACAATTTTAAC+GGG | + | chr5_2:10041156-10041175 | Msa0756030:CDS | 25.0% |
| ! | ATCAATATCAGACCAATAAT+AGG | + | chr5_2:10041477-10041496 | Msa0756030:intron | 25.0% |
| !!! | TATTAGTGGAGTTTTATTGT+TGG | + | chr5_2:10041707-10041726 | Msa0756030:CDS | 25.0% |
| !!! | TTGCAAGTTATTTTGTTCAA+GGG | + | chr5_2:10041812-10041831 | Msa0756030:intron | 25.0% |
| ! | TAAAAGCTAAAACAACTTCA+AGG | - | chr5_2:10041886-10041905 | None:intergenic | 25.0% |
| ! | TAACTAATGGTTTCTTGAAA+GGG | - | chr5_2:10042044-10042063 | None:intergenic | 25.0% |
| !!! | TCGATCTTTTTTGTAACTAA+TGG | - | chr5_2:10042057-10042076 | None:intergenic | 25.0% |
| ! | TTAGTTACAAAAAAGATCGA+AGG | + | chr5_2:10042057-10042076 | Msa0756030:intron | 25.0% |
| !! | AATAAAACATCGTAGGTTTT+TGG | - | chr5_2:10042205-10042224 | None:intergenic | 25.0% |
| ! | AATGTTTAGACAAATTACCA+CGG | - | chr5_2:10042473-10042492 | None:intergenic | 25.0% |
| !! | AAGCTCTTTTGTAACAAATA+TGG | - | chr5_2:10042828-10042847 | None:intergenic | 25.0% |
| !! | AATCATAATTCAGGTTTACA+TGG | - | chr5_2:10042879-10042898 | None:intergenic | 25.0% |
| ! | ACCTGAATTATGATTATGAA+AGG | + | chr5_2:10042884-10042903 | Msa0756030:intron | 25.0% |
| ! | TCCTTTCATAATCATAATTC+AGG | - | chr5_2:10042888-10042907 | None:intergenic | 25.0% |
| ! | ATTAATTCACAAGACATGTT+TGG | + | chr5_2:10042914-10042933 | Msa0756030:intron | 25.0% |
| ! | TTAATTCACAAGACATGTTT+GGG | + | chr5_2:10042915-10042934 | Msa0756030:intron | 25.0% |
| !! | GTTTCAAGAAGATATTTTTC+AGG | + | chr5_2:10043053-10043072 | Msa0756030:intron | 25.0% |
| ! | TGAAATATGTGCAGATTATA+TGG | + | chr5_2:10043175-10043194 | Msa0756030:intron | 25.0% |
| ! | CATATAATACTTAGAATTGC+GGG | - | chr5_2:10043513-10043532 | None:intergenic | 25.0% |
| ! | ACAACAGATTTACAATACAA+AGG | - | chr5_2:10043738-10043757 | None:intergenic | 25.0% |
| ! | AATTGGAGATTAAGTTGTTG+AGG | - | chr5_2:10039009-10039028 | None:intergenic | 30.0% |
| !! | AATTGTTGATAGTCCTTCTT+TGG | + | chr5_2:10039233-10039252 | Msa0756030:CDS | 30.0% |
| !! | TTAACTTTTGAGTCTAAACG+TGG | + | chr5_2:10039373-10039392 | Msa0756030:intron | 30.0% |
| GTTAGTAACAGTAATGTTTC+TGG | + | chr5_2:10039524-10039543 | Msa0756030:intron | 30.0% | |
| AATGTTGTCAATTTGCACAT+GGG | - | chr5_2:10039608-10039627 | None:intergenic | 30.0% | |
| GACAACATTCTCAAAGATAA+AGG | + | chr5_2:10039619-10039638 | Msa0756030:CDS | 30.0% | |
| TCTCAAAGATAAAGGTTAGT+TGG | + | chr5_2:10039627-10039646 | Msa0756030:intron | 30.0% | |
| ! | CTCAAAGATAAAGGTTAGTT+GGG | + | chr5_2:10039628-10039647 | Msa0756030:intron | 30.0% |
| ! | ATAAAGGTTAGTTGGGTTAA+GGG | + | chr5_2:10039635-10039654 | Msa0756030:intron | 30.0% |
| !! | CAATTTTTGTTTGGAGACAA+TGG | + | chr5_2:10039739-10039758 | Msa0756030:intron | 30.0% |
| !! | CTTATTTTCATTAGCTCTTC+AGG | + | chr5_2:10039799-10039818 | Msa0756030:intron | 30.0% |
| TGCATCTAGTAACTTGAAAA+TGG | + | chr5_2:10039931-10039950 | Msa0756030:intron | 30.0% | |
| ACTTGAAAATGGCTTATAGT+TGG | + | chr5_2:10039942-10039961 | Msa0756030:intron | 30.0% | |
| CTTGAAAATGGCTTATAGTT+GGG | + | chr5_2:10039943-10039962 | Msa0756030:intron | 30.0% | |
| CAGTAACATGGTCAATTATA+AGG | - | chr5_2:10040163-10040182 | None:intergenic | 30.0% | |
| ATGTCTACGAATATTGCATA+TGG | - | chr5_2:10040315-10040334 | None:intergenic | 30.0% | |
| ATATGCAATATTCGTAGACA+TGG | + | chr5_2:10040314-10040333 | Msa0756030:CDS | 30.0% | |
| !!! | TTTTTTTTGACAGAGAAGAG+GGG | + | chr5_2:10040508-10040527 | Msa0756030:intron | 30.0% |
| !! | TGAGCATAACAATTTTAACG+GGG | + | chr5_2:10041157-10041176 | Msa0756030:CDS | 30.0% |
| AATATCAGACCAATAATAGG+TGG | + | chr5_2:10041480-10041499 | Msa0756030:intron | 30.0% | |
| ! | ATACCATCTTCCATTTTATC+AGG | + | chr5_2:10041650-10041669 | Msa0756030:intron | 30.0% |
| ! | TACCATCTTCCATTTTATCA+GGG | + | chr5_2:10041651-10041670 | Msa0756030:intron | 30.0% |
| TTGGAATTGTTTACAAGAGA+TGG | + | chr5_2:10041726-10041745 | Msa0756030:CDS | 30.0% | |
| TGGAATTGTTTACAAGAGAT+GGG | + | chr5_2:10041727-10041746 | Msa0756030:CDS | 30.0% | |
| !! | CTTGCAAGTTATTTTGTTCA+AGG | + | chr5_2:10041811-10041830 | Msa0756030:intron | 30.0% |
| AACTAATTGCCAAGAGAAAT+AGG | + | chr5_2:10041840-10041859 | Msa0756030:intron | 30.0% | |
| ! | TTTCAAACACCTATTTCTCT+TGG | - | chr5_2:10041852-10041871 | None:intergenic | 30.0% |
| TTTCTTGAAAGGGAAAACAT+GGG | - | chr5_2:10042034-10042053 | None:intergenic | 30.0% | |
| GTAACTAATGGTTTCTTGAA+AGG | - | chr5_2:10042045-10042064 | None:intergenic | 30.0% | |
| ! | TCTATGTATTGGGATGTTTT+CGG | + | chr5_2:10042752-10042771 | Msa0756030:intron | 30.0% |
| ATCACTAGTACAACTATTCT+GGG | - | chr5_2:10042945-10042964 | None:intergenic | 30.0% | |
| TATCACTAGTACAACTATTC+TGG | - | chr5_2:10042946-10042965 | None:intergenic | 30.0% | |
| ! | AATGACATTGATTGTGGATA+AGG | - | chr5_2:10043298-10043317 | None:intergenic | 30.0% |
| ! | GTGAAAAATGACATTGATTG+TGG | - | chr5_2:10043304-10043323 | None:intergenic | 30.0% |
| ACAGTAATTCCACTCTTATT+TGG | - | chr5_2:10043548-10043567 | None:intergenic | 30.0% | |
| AATAAGAGTGGAATTACTGT+TGG | + | chr5_2:10043548-10043567 | Msa0756030:CDS | 30.0% | |
| ! | AGAACTATTTTCCAGTTACA+AGG | + | chr5_2:10043594-10043613 | Msa0756030:exon | 30.0% |
| ! | GAACTATTTTCCAGTTACAA+GGG | + | chr5_2:10043595-10043614 | Msa0756030:exon | 30.0% |
| ! | AACTATTTTCCAGTTACAAG+GGG | + | chr5_2:10043596-10043615 | Msa0756030:three_prime_UTR | 30.0% |
| ATGACTAAGGTTTGAATTGT+GGG | - | chr5_2:10043791-10043810 | None:intergenic | 30.0% | |
| AAGCAACAAATTTGTCCAAG+CGG | + | chr5_2:10038830-10038849 | Msa0756030:five_prime_UTR | 35.0% | |
| !! | ATGAAGTGGTGAAGTTGATA+GGG | - | chr5_2:10038960-10038979 | None:intergenic | 35.0% |
| GGTGAAAAACGAGGAATTAA+AGG | - | chr5_2:10039043-10039062 | None:intergenic | 35.0% | |
| ! | CATTGTTTCGTGATTTTGAG+CGG | - | chr5_2:10039064-10039083 | None:intergenic | 35.0% |
| AGAAATGACGAGAACAAAAG+TGG | - | chr5_2:10039208-10039227 | None:intergenic | 35.0% | |
| !! | GAATTCAATTCTGGAGTCAA+AGG | - | chr5_2:10039331-10039350 | None:intergenic | 35.0% |
| ! | ATAGCTTTTCTTCATCACCT+TGG | + | chr5_2:10039556-10039575 | Msa0756030:CDS | 35.0% |
| ! | CAATAACAAAGTGGATTCCA+AGG | - | chr5_2:10039576-10039595 | None:intergenic | 35.0% |
| !! | ATCCACTTTGTTATTGTTCC+TGG | + | chr5_2:10039580-10039599 | Msa0756030:CDS | 35.0% |
| GAATGTTGTCAATTTGCACA+TGG | - | chr5_2:10039609-10039628 | None:intergenic | 35.0% | |
| ! | GATAAAGGTTAGTTGGGTTA+AGG | + | chr5_2:10039634-10039653 | Msa0756030:intron | 35.0% |
| ! | GCCTATGAAAACAAGCTTTT+TGG | + | chr5_2:10039825-10039844 | Msa0756030:intron | 35.0% |
| !! | GCCAAAAAGCTTGTTTTCAT+AGG | - | chr5_2:10039829-10039848 | None:intergenic | 35.0% |
| ATAGCAGCTAAACTTTCAGT+TGG | + | chr5_2:10040284-10040303 | Msa0756030:CDS | 35.0% | |
| CTACGAATATTGCATATGGA+AGG | - | chr5_2:10040311-10040330 | None:intergenic | 35.0% | |
| GAATTGATTATGGGTCAACT+GGG | + | chr5_2:10040540-10040559 | Msa0756030:CDS | 35.0% | |
| AATTGATTATGGGTCAACTG+GGG | + | chr5_2:10040541-10040560 | Msa0756030:CDS | 35.0% | |
| GGTCCAATACTTGATGAAAA+TGG | + | chr5_2:10041014-10041033 | Msa0756030:CDS | 35.0% | |
| ! | CGTCCATTTTCATCAAGTAT+TGG | - | chr5_2:10041020-10041039 | None:intergenic | 35.0% |
| ! | TCTGTAATGCGTTTTCCATT+AGG | - | chr5_2:10041197-10041216 | None:intergenic | 35.0% |
| ATGGAAAACGCATTACAGAA+TGG | + | chr5_2:10041198-10041217 | Msa0756030:CDS | 35.0% | |
| CATAATGCAACTTTCCACAA+TGG | + | chr5_2:10041221-10041240 | Msa0756030:CDS | 35.0% | |
| !!! | AATGGTGTTGGTTTTGAGAA+TGG | + | chr5_2:10041239-10041258 | Msa0756030:CDS | 35.0% |
| AACGTCTAAGTCGAATGAAT+GGG | + | chr5_2:10041309-10041328 | Msa0756030:CDS | 35.0% | |
| AAATATTGCCACTGTACTCT+GGG | + | chr5_2:10041569-10041588 | Msa0756030:intron | 35.0% | |
| ! | TCAGTTGATGCATGTTTCTT+TGG | + | chr5_2:10041614-10041633 | Msa0756030:intron | 35.0% |
| ! | ATCTTCCATTTTATCAGGGA+GGG | + | chr5_2:10041655-10041674 | Msa0756030:intron | 35.0% |
| ATTGTTTACAAGAGATGGGA+TGG | + | chr5_2:10041731-10041750 | Msa0756030:CDS | 35.0% | |
| TTGTTTACAAGAGATGGGAT+GGG | + | chr5_2:10041732-10041751 | Msa0756030:CDS | 35.0% | |
| !! | GCTTTTAAGAACAGTTCAGT+TGG | + | chr5_2:10041899-10041918 | Msa0756030:intron | 35.0% |
| AGAGTAAAATCACATGTACC+AGG | - | chr5_2:10041942-10041961 | None:intergenic | 35.0% | |
| TACATCCTTACAGATAACTC+TGG | - | chr5_2:10041973-10041992 | None:intergenic | 35.0% | |
| AAGGATGTAAATATGCGAGT+TGG | + | chr5_2:10041984-10042003 | Msa0756030:intron | 35.0% | |
| GTTTCTTGAAAGGGAAAACA+TGG | - | chr5_2:10042035-10042054 | None:intergenic | 35.0% | |
| TAGCATGCATGTACTCTATA+AGG | - | chr5_2:10042119-10042138 | None:intergenic | 35.0% | |
| TGTGGGAAATAAAACATCGT+AGG | - | chr5_2:10042212-10042231 | None:intergenic | 35.0% | |
| TGTCTACATCAGATTGTTCA+TGG | + | chr5_2:10042255-10042274 | Msa0756030:intron | 35.0% | |
| ! | GCAGAGAAAGAAGATTTTTC+TGG | + | chr5_2:10042324-10042343 | Msa0756030:CDS | 35.0% |
| CAAACAACTTATTCAGCCTT+TGG | + | chr5_2:10042350-10042369 | Msa0756030:CDS | 35.0% | |
| TTTATAGCTGCTACAAACGT+TGG | + | chr5_2:10042515-10042534 | Msa0756030:intron | 35.0% | |
| GTTGGATAATTTCGTTGTTG+TGG | + | chr5_2:10042533-10042552 | Msa0756030:CDS | 35.0% | |
| GAAGGTCAAATAATTGCATG+TGG | + | chr5_2:10042561-10042580 | Msa0756030:CDS | 35.0% | |
| GAAGCTGATTAATATCGTTC+TGG | - | chr5_2:10042802-10042821 | None:intergenic | 35.0% | |
| !!! | TATTTTTCAGGCTTCAGCTT+TGG | + | chr5_2:10043065-10043084 | Msa0756030:intron | 35.0% |
| AAGCTTCTACCAAATAAGAG+TGG | + | chr5_2:10043536-10043555 | Msa0756030:CDS | 35.0% | |
| ! | ACTATTTTCCAGTTACAAGG+GGG | + | chr5_2:10043597-10043616 | Msa0756030:three_prime_UTR | 35.0% |
| TTCGAGCTACAAGATTGTTA+CGG | - | chr5_2:10043677-10043696 | None:intergenic | 35.0% | |
| CATGACTAAGGTTTGAATTG+TGG | - | chr5_2:10043792-10043811 | None:intergenic | 35.0% | |
| !! | GAAGTTGATAGGGTTTGGAA+GGG | - | chr5_2:10038950-10038969 | None:intergenic | 40.0% |
| !! | TGAAGTTGATAGGGTTTGGA+AGG | - | chr5_2:10038951-10038970 | None:intergenic | 40.0% |
| ! | GATGAAGTGGTGAAGTTGAT+AGG | - | chr5_2:10038961-10038980 | None:intergenic | 40.0% |
| ! | GAGGATTGAAGTGAGAGTAT+TGG | - | chr5_2:10038990-10039009 | None:intergenic | 40.0% |
| TAAAGGAGCGAGGTTTGAAT+TGG | - | chr5_2:10039026-10039045 | None:intergenic | 40.0% | |
| ! | ATTTTGAGCGGTGAAAAACG+AGG | - | chr5_2:10039052-10039071 | None:intergenic | 40.0% |
| TTGAACAACGAAGGAGTGAA+CGG | + | chr5_2:10039099-10039118 | Msa0756030:CDS | 40.0% | |
| CTACGATAAGCGAGAAGATA+AGG | - | chr5_2:10039183-10039202 | None:intergenic | 40.0% | |
| TTGAGAATGGGATCCAAAGA+AGG | - | chr5_2:10039249-10039268 | None:intergenic | 40.0% | |
| TTCTTTGGATCCCATTCTCA+AGG | + | chr5_2:10039248-10039267 | Msa0756030:CDS | 40.0% | |
| TGCCAGGAACAATAACAAAG+TGG | - | chr5_2:10039585-10039604 | None:intergenic | 40.0% | |
| !!! | GTTGGGTTAAGGGTTTTGTT+TGG | + | chr5_2:10039645-10039664 | Msa0756030:intron | 40.0% |
| ! | GATGCATTTGTTGCTTCTTC+AGG | - | chr5_2:10039917-10039936 | None:intergenic | 40.0% |
| TCCACCTATGCTGAAAAATG+AGG | + | chr5_2:10040103-10040122 | Msa0756030:intron | 40.0% | |
| CCACCTATGCTGAAAAATGA+GGG | + | chr5_2:10040104-10040123 | Msa0756030:intron | 40.0% | |
| ACCATGTTACTGCGTTTACA+GGG | + | chr5_2:10040171-10040190 | Msa0756030:intron | 40.0% | |
| GTTAGTGTCAGTGTTACAAG+TGG | + | chr5_2:10040359-10040378 | Msa0756030:CDS | 40.0% | |
| TGGTCGGTGGAATTGATTAT+GGG | + | chr5_2:10040531-10040550 | Msa0756030:CDS | 40.0% | |
| GGAATTGATTATGGGTCAAC+TGG | + | chr5_2:10040539-10040558 | Msa0756030:CDS | 40.0% | |
| ATTCAATACTTCACCAGAGC+TGG | - | chr5_2:10040648-10040667 | None:intergenic | 40.0% | |
| AACATGTCTGCTTCTTCAAG+AGG | - | chr5_2:10041059-10041078 | None:intergenic | 40.0% | |
| CAGACATGTTAATTCGCAAG+CGG | + | chr5_2:10041069-10041088 | Msa0756030:CDS | 40.0% | |
| AGACATGTTAATTCGCAAGC+GGG | + | chr5_2:10041070-10041089 | Msa0756030:CDS | 40.0% | |
| !! | AGCTGCTATTTCACTTTGCT+CGG | - | chr5_2:10041096-10041115 | None:intergenic | 40.0% |
| AGCAGCTAACTATGTGAAAG+CGG | + | chr5_2:10041109-10041128 | Msa0756030:CDS | 40.0% | |
| TAACTATGTGAAAGCGGTTG+AGG | + | chr5_2:10041115-10041134 | Msa0756030:CDS | 40.0% | |
| ! | GTAATGCGTTTTCCATTAGG+TGG | - | chr5_2:10041194-10041213 | None:intergenic | 40.0% |
| TCTCAAAACCAACACCATTG+TGG | - | chr5_2:10041238-10041257 | None:intergenic | 40.0% | |
| !!! | GTTGGTTTTGAGAATGGAGA+TGG | + | chr5_2:10041245-10041264 | Msa0756030:CDS | 40.0% |
| TTTGAGAATGGAGATGGCTT+AGG | + | chr5_2:10041251-10041270 | Msa0756030:CDS | 40.0% | |
| TTGAGAATGGAGATGGCTTA+GGG | + | chr5_2:10041252-10041271 | Msa0756030:CDS | 40.0% | |
| GAACGTCTAAGTCGAATGAA+TGG | + | chr5_2:10041308-10041327 | Msa0756030:CDS | 40.0% | |
| ! | AATTTTCTTGTCAAGTGCCC+TGG | + | chr5_2:10041393-10041412 | Msa0756030:intron | 40.0% |
| GACTTAAATAAGCACAGCCA+GGG | - | chr5_2:10041413-10041432 | None:intergenic | 40.0% | |
| AGACTTAAATAAGCACAGCC+AGG | - | chr5_2:10041414-10041433 | None:intergenic | 40.0% | |
| CAGCAAACACCACCTATTAT+TGG | - | chr5_2:10041492-10041511 | None:intergenic | 40.0% | |
| CAAATATTGCCACTGTACTC+TGG | + | chr5_2:10041568-10041587 | Msa0756030:intron | 40.0% | |
| CTCCCTGATAAAATGGAAGA+TGG | - | chr5_2:10041656-10041675 | None:intergenic | 40.0% | |
| ! | CATCTTCCATTTTATCAGGG+AGG | + | chr5_2:10041654-10041673 | Msa0756030:intron | 40.0% |
| ! | TCTTCCATTTTATCAGGGAG+GGG | + | chr5_2:10041656-10041675 | Msa0756030:intron | 40.0% |
| GGTTCAAAGAGTTCACTTGT+TGG | + | chr5_2:10041677-10041696 | Msa0756030:CDS | 40.0% | |
| ! | CAAAGAGTTCACTTGTTGGA+TGG | + | chr5_2:10041681-10041700 | Msa0756030:CDS | 40.0% |
| TTGTTGGATGGCACTATTAG+TGG | + | chr5_2:10041693-10041712 | Msa0756030:CDS | 40.0% | |
| GAGATCCAGAGTTATCTGTA+AGG | + | chr5_2:10041965-10041984 | Msa0756030:intron | 40.0% | |
| AACATGGGAATGCTCACAAA+TGG | - | chr5_2:10042019-10042038 | None:intergenic | 40.0% | |
| ! | TTTTGCAGTGACCTTTACGA+AGG | + | chr5_2:10042291-10042310 | Msa0756030:intron | 40.0% |
| ACAACTTATTCAGCCTTTGG+AGG | + | chr5_2:10042353-10042372 | Msa0756030:CDS | 40.0% | |
| TTACATAGCTTACATAGCCG+TGG | + | chr5_2:10042453-10042472 | Msa0756030:intron | 40.0% | |
| TTCGTTGTTGTGGAAAGAGA+AGG | + | chr5_2:10042543-10042562 | Msa0756030:CDS | 40.0% | |
| GGTCAAATAATTGCATGTGG+TGG | + | chr5_2:10042564-10042583 | Msa0756030:CDS | 40.0% | |
| GCATGCATGATTACATGCAA+GGG | - | chr5_2:10043129-10043148 | None:intergenic | 40.0% | |
| TTACAACACGTACAGCAGAT+TGG | + | chr5_2:10043240-10043259 | Msa0756030:CDS | 40.0% | |
| ! | TCCCCTAATCCATGTCATTT+AGG | + | chr5_2:10043272-10043291 | Msa0756030:intron | 40.0% |
| !! | GCCTAAATGACATGGATTAG+GGG | - | chr5_2:10043276-10043295 | None:intergenic | 40.0% |
| ! | GGCCTAAATGACATGGATTA+GGG | - | chr5_2:10043277-10043296 | None:intergenic | 40.0% |
| AGGCCTAAATGACATGGATT+AGG | - | chr5_2:10043278-10043297 | None:intergenic | 40.0% | |
| TGGATAAGGCCTAAATGACA+TGG | - | chr5_2:10043284-10043303 | None:intergenic | 40.0% | |
| ATGATTCCCAACTTCTTGAC+AGG | + | chr5_2:10043414-10043433 | Msa0756030:intron | 40.0% | |
| CACAAACCTGTCAAGAAGTT+GGG | - | chr5_2:10043423-10043442 | None:intergenic | 40.0% | |
| TCACAAACCTGTCAAGAAGT+TGG | - | chr5_2:10043424-10043443 | None:intergenic | 40.0% | |
| AACTTCTTGACAGGTTTGTG+AGG | + | chr5_2:10043423-10043442 | Msa0756030:intron | 40.0% | |
| AAGAGTGGAATTACTGTTGG+TGG | + | chr5_2:10043551-10043570 | Msa0756030:CDS | 40.0% | |
| ! | GTAAGTGTGATTGGAAGCAT+GGG | + | chr5_2:10043619-10043638 | Msa0756030:three_prime_UTR | 40.0% |
| TCGAGCTACAAGATTGTTAC+GGG | - | chr5_2:10043676-10043695 | None:intergenic | 40.0% | |
| TTGTAGCTCGAATCTGTGTT+TGG | + | chr5_2:10043685-10043704 | Msa0756030:three_prime_UTR | 40.0% | |
| ACAAATTTGTCCAAGCGGCA+CGG | + | chr5_2:10038835-10038854 | Msa0756030:five_prime_UTR | 45.0% | |
| CATTGAGTGTTAAGCGGCAA+TGG | - | chr5_2:10038899-10038918 | None:intergenic | 45.0% | |
| ! | CATTGCCGCTTAACACTCAA+TGG | + | chr5_2:10038897-10038916 | Msa0756030:exon | 45.0% |
| AGGAGCCATTGAGTGTTAAG+CGG | - | chr5_2:10038905-10038924 | None:intergenic | 45.0% | |
| ! | GTATAGAGGCGCGATAAAGA+AGG | - | chr5_2:10038925-10038944 | None:intergenic | 45.0% |
| ! | GGTTTGGAAGGGAAGTATAG+AGG | - | chr5_2:10038939-10038958 | None:intergenic | 45.0% |
| !! | GTGGTGAAGTTGATAGGGTT+TGG | - | chr5_2:10038955-10038974 | None:intergenic | 45.0% |
| ! | GTATTGGCGAGAAGATGAAG+TGG | - | chr5_2:10038974-10038993 | None:intergenic | 45.0% |
| AACGAGGAATTAAAGGAGCG+AGG | - | chr5_2:10039036-10039055 | None:intergenic | 45.0% | |
| GTGAACGGAATCACTGAAGA+AGG | + | chr5_2:10039114-10039133 | Msa0756030:CDS | 45.0% | |
| ATAAGGCCAAGCTTCACGAA+GGG | - | chr5_2:10039166-10039185 | None:intergenic | 45.0% | |
| !! | ACAGTAATGTTTCTGGGTGC+AGG | + | chr5_2:10039531-10039550 | Msa0756030:intron | 45.0% |
| !! | CCCTCATTTTTCAGCATAGG+TGG | - | chr5_2:10040107-10040126 | None:intergenic | 45.0% |
| !! | GAGCCCTCATTTTTCAGCAT+AGG | - | chr5_2:10040110-10040129 | None:intergenic | 45.0% |
| AGGGCTCTTCAATCGTAACA+CGG | + | chr5_2:10040123-10040142 | Msa0756030:intron | 45.0% | |
| GACCATGTTACTGCGTTTAC+AGG | + | chr5_2:10040170-10040189 | Msa0756030:intron | 45.0% | |
| TCCCTGTAAACGCAGTAACA+TGG | - | chr5_2:10040175-10040194 | None:intergenic | 45.0% | |
| GGAGCAAGGCTAAGTATGTT+GGG | + | chr5_2:10040192-10040211 | Msa0756030:CDS | 45.0% | |
| TGGTAACTTTCTTGCAGCCA+AGG | + | chr5_2:10040379-10040398 | Msa0756030:CDS | 45.0% | |
| ! | TTTTTGACAGAGAAGAGGGG+TGG | + | chr5_2:10040511-10040530 | Msa0756030:intron | 45.0% |
| GTGGTCGGTGGAATTGATTA+TGG | + | chr5_2:10040530-10040549 | Msa0756030:CDS | 45.0% | |
| TTCTTTCTCCAGCACCTATG+AGG | + | chr5_2:10040935-10040954 | Msa0756030:intron | 45.0% | |
| ACAAGCTGTTGCAACCTCAT+AGG | - | chr5_2:10040952-10040971 | None:intergenic | 45.0% | |
| CAAGAGGCAAGAAACGAATC+AGG | - | chr5_2:10041043-10041062 | None:intergenic | 45.0% | |
| GCAGTCAAATCTCCACCTAA+TGG | + | chr5_2:10041179-10041198 | Msa0756030:CDS | 45.0% | |
| GCAACTTTCCACAATGGTGT+TGG | + | chr5_2:10041227-10041246 | Msa0756030:CDS | 45.0% | |
| GAATGGGTACCTGTCAGAAT+TGG | + | chr5_2:10041325-10041344 | Msa0756030:CDS | 45.0% | |
| !! | TGCTGCAGCTTTTGTTTGCA+GGG | + | chr5_2:10041349-10041368 | Msa0756030:CDS | 45.0% |
| TGAACCCCTCCCTGATAAAA+TGG | - | chr5_2:10041663-10041682 | None:intergenic | 45.0% | |
| AAGAGATGGGATGGGAACAA+TGG | + | chr5_2:10041740-10041759 | Msa0756030:CDS | 45.0% | |
| AGTTCAGTTGGCATCCTTGT+GGG | + | chr5_2:10041911-10041930 | Msa0756030:intron | 45.0% | |
| TGTACCAGGAAAAACCCACA+AGG | - | chr5_2:10041928-10041947 | None:intergenic | 45.0% | |
| !!! | CTTTTCGAGTGCCTTCGTAA+AGG | - | chr5_2:10042305-10042324 | None:intergenic | 45.0% |
| ! | CATGTGGCATACTGGTTAAG+CGG | + | chr5_2:10042376-10042395 | Msa0756030:CDS | 45.0% |
| TCTCCTCAGGGTAAGGAAAA+AGG | - | chr5_2:10042590-10042609 | None:intergenic | 45.0% | |
| GGCATGCATGATTACATGCA+AGG | - | chr5_2:10043130-10043149 | None:intergenic | 45.0% | |
| GAGAAGAAAGCAGCATCTCT+TGG | + | chr5_2:10043197-10043216 | Msa0756030:CDS | 45.0% | |
| CTGCTGTACGTGTTGTAAGT+AGG | - | chr5_2:10043238-10043257 | None:intergenic | 45.0% | |
| TACAAGGGGGTAAGTGTGAT+TGG | + | chr5_2:10043610-10043629 | Msa0756030:three_prime_UTR | 45.0% | |
| GGTAAGTGTGATTGGAAGCA+TGG | + | chr5_2:10043618-10043637 | Msa0756030:three_prime_UTR | 45.0% | |
| TCGAATCTGTGTTTGGTACC+AGG | + | chr5_2:10043692-10043711 | Msa0756030:three_prime_UTR | 45.0% | |
| AATGCTACATGTCGAAGACC+TGG | - | chr5_2:10043713-10043732 | None:intergenic | 45.0% | |
| TTGAATTGTGGGCAGGACAA+GGG | - | chr5_2:10043780-10043799 | None:intergenic | 45.0% | |
| TTTGAATTGTGGGCAGGACA+AGG | - | chr5_2:10043781-10043800 | None:intergenic | 45.0% | |
| CTAAGGTTTGAATTGTGGGC+AGG | - | chr5_2:10043787-10043806 | None:intergenic | 45.0% | |
| !! | AAATAATCATATTAATATTA+AGG | - | chr5_2:10040914-10040933 | None:intergenic | 5.0% |
| TGAGTGTTAAGCGGCAATGG+CGG | - | chr5_2:10038896-10038915 | None:intergenic | 50.0% | |
| CGCAATGCGTTGAACAACGA+AGG | + | chr5_2:10039090-10039109 | Msa0756030:CDS | 50.0% | |
| TTCGTTCCCTTCGTGAAGCT+TGG | + | chr5_2:10039157-10039176 | Msa0756030:CDS | 50.0% | |
| GATAAGGCCAAGCTTCACGA+AGG | - | chr5_2:10039167-10039186 | None:intergenic | 50.0% | |
| TGGATCCCATTCTCAAGGCA+AGG | + | chr5_2:10039253-10039272 | Msa0756030:intron | 50.0% | |
| GCATGCCTTGCCTTGAGAAT+GGG | - | chr5_2:10039261-10039280 | None:intergenic | 50.0% | |
| TGCATGCCTTGCCTTGAGAA+TGG | - | chr5_2:10039262-10039281 | None:intergenic | 50.0% | |
| TCAATTTGCACATGGGTGCC+AGG | - | chr5_2:10039601-10039620 | None:intergenic | 50.0% | |
| TACTGCGTTTACAGGGAGCA+AGG | + | chr5_2:10040178-10040197 | Msa0756030:intron | 50.0% | |
| GGGAGCAAGGCTAAGTATGT+TGG | + | chr5_2:10040191-10040210 | Msa0756030:intron | 50.0% | |
| ATGCGTGAGAGACTTGATGG+TGG | + | chr5_2:10040590-10040609 | Msa0756030:CDS | 50.0% | |
| TGTTGCAACCTCATAGGTGC+TGG | - | chr5_2:10040946-10040965 | None:intergenic | 50.0% | |
| ACAGCTTGTGCCTTGGCAAT+TGG | + | chr5_2:10040963-10040982 | Msa0756030:CDS | 50.0% | |
| CAGCTTGTGCCTTGGCAATT+GGG | + | chr5_2:10040964-10040983 | Msa0756030:CDS | 50.0% | |
| AGCTTGTGCCTTGGCAATTG+GGG | + | chr5_2:10040965-10040984 | Msa0756030:CDS | 50.0% | |
| GTGAAAGCGGTTGAGGAAGA+AGG | + | chr5_2:10041122-10041141 | Msa0756030:CDS | 50.0% | |
| ! | AGCGAGCAAGGCTTTGCTAT+TGG | + | chr5_2:10041278-10041297 | Msa0756030:CDS | 50.0% |
| !! | GAGCAAGGCTTTGCTATTGG+AGG | + | chr5_2:10041281-10041300 | Msa0756030:CDS | 50.0% |
| !! | CTGCTGCAGCTTTTGTTTGC+AGG | + | chr5_2:10041348-10041367 | Msa0756030:CDS | 50.0% |
| TATTGCCACTGTACTCTGGG+TGG | + | chr5_2:10041572-10041591 | Msa0756030:intron | 50.0% | |
| AGATGGGATGGGAACAATGG+TGG | + | chr5_2:10041743-10041762 | Msa0756030:CDS | 50.0% | |
| CAGTTCAGTTGGCATCCTTG+TGG | + | chr5_2:10041910-10041929 | Msa0756030:intron | 50.0% | |
| ! | GCATCCTTGTGGGTTTTTCC+TGG | + | chr5_2:10041921-10041940 | Msa0756030:intron | 50.0% |
| ! | ATTCAGCCTTTGGAGGCATG+TGG | + | chr5_2:10042360-10042379 | Msa0756030:CDS | 50.0% |
| AGTATGCCACATGCCTCCAA+AGG | - | chr5_2:10042369-10042388 | None:intergenic | 50.0% | |
| ! | TTTGGAGGCATGTGGCATAC+TGG | + | chr5_2:10042368-10042387 | Msa0756030:CDS | 50.0% |
| GGTTAAGCGGTCTGATGAAG+AGG | + | chr5_2:10042389-10042408 | Msa0756030:CDS | 50.0% | |
| ! | TGGCCTTTTTCCTTACCCTG+AGG | + | chr5_2:10042584-10042603 | Msa0756030:CDS | 50.0% |
| CACACTTACCCCCTTGTAAC+TGG | - | chr5_2:10043608-10043627 | None:intergenic | 50.0% | |
| AATTTGTCCAAGCGGCACGG+CGG | + | chr5_2:10038838-10038857 | Msa0756030:five_prime_UTR | 55.0% | |
| AACGCTGCAATGTGTGCAGC+AGG | + | chr5_2:10040245-10040264 | Msa0756030:CDS | 55.0% | |
| TGACAGAGAAGAGGGGTGGT+CGG | + | chr5_2:10040515-10040534 | Msa0756030:intron | 55.0% | |
| CGCATGCGTGAGAGACTTGA+TGG | + | chr5_2:10040587-10040606 | Msa0756030:CDS | 55.0% | |
| AGAGCTGGAGTAGCCCAAGT+TGG | - | chr5_2:10040633-10040652 | None:intergenic | 55.0% | |
| AACTTGGGCTACTCCAGCTC+TGG | + | chr5_2:10040632-10040651 | Msa0756030:CDS | 55.0% | |
| GGTTGCAACAGCTTGTGCCT+TGG | + | chr5_2:10040956-10040975 | Msa0756030:CDS | 55.0% | |
| TTGTGCCTTGGCAATTGGGG+CGG | + | chr5_2:10040968-10040987 | Msa0756030:CDS | 55.0% | |
| CTGCAGCAGCCAATTCTGAC+AGG | - | chr5_2:10041337-10041356 | None:intergenic | 55.0% | |
| CCAAACCACCCAGAGTACAG+TGG | - | chr5_2:10041580-10041599 | None:intergenic | 55.0% | |
| CCACTGTACTCTGGGTGGTT+TGG | + | chr5_2:10041577-10041596 | Msa0756030:intron | 55.0% | |
| GGATGGGAACAATGGTGGCT+AGG | + | chr5_2:10041748-10041767 | Msa0756030:CDS | 55.0% | |
| GCACACTTCTCCTCAGGGTA+AGG | - | chr5_2:10042597-10042616 | None:intergenic | 55.0% | |
| CCTCTGCACACTTCTCCTCA+GGG | - | chr5_2:10042602-10042621 | None:intergenic | 55.0% | |
| ACCTCTGCACACTTCTCCTC+AGG | - | chr5_2:10042603-10042622 | None:intergenic | 55.0% | |
| GCAGTATCTCCTGATTGCCG+TGG | + | chr5_2:10042633-10042652 | Msa0756030:CDS | 55.0% | |
| GCAATTTGTCTCCCTGCCCT+TGG | - | chr5_2:10042659-10042678 | None:intergenic | 55.0% | |
| GGGCAGGGAGACAAATTGCT+TGG | + | chr5_2:10042660-10042679 | Msa0756030:CDS | 55.0% | |
| CTTGACAGGTTTGTGAGGCG+TGG | + | chr5_2:10043428-10043447 | Msa0756030:intron | 55.0% | |
| GCTGCAATGTGTGCAGCAGG+AGG | + | chr5_2:10040248-10040267 | Msa0756030:CDS | 60.0% | |
| CTTGTCCGCCCCAATTGCCA+AGG | - | chr5_2:10040976-10040995 | None:intergenic | 60.0% | |
| ! | GGCTTAGGGACTAGCGAGCA+AGG | + | chr5_2:10041266-10041285 | Msa0756030:CDS | 60.0% |
| ! | CCCTGAGGAGAAGTGTGCAG+AGG | + | chr5_2:10042599-10042618 | Msa0756030:CDS | 60.0% |
| TCTCCTGATTGCCGTGGCCA+AGG | + | chr5_2:10042639-10042658 | Msa0756030:CDS | 60.0% | |
| CTCCTGATTGCCGTGGCCAA+GGG | + | chr5_2:10042640-10042659 | Msa0756030:CDS | 60.0% | |
| CAGAGAAGAGGGGTGGTCGG+TGG | + | chr5_2:10040518-10040537 | Msa0756030:intron | 65.0% | |
| TGCCCTTGGCCACGGCAATC+AGG | - | chr5_2:10042645-10042664 | None:intergenic | 65.0% | |
| TGATTGCCGTGGCCAAGGGC+AGG | + | chr5_2:10042644-10042663 | Msa0756030:CDS | 65.0% | |
| GATTGCCGTGGCCAAGGGCA+GGG | + | chr5_2:10042645-10042664 | Msa0756030:CDS | 65.0% | |
| TGTCTCCCTGCCCTTGGCCA+CGG | - | chr5_2:10042653-10042672 | None:intergenic | 65.0% | |
| ! | TTTCACGCCGCCGTGCCGCT+TGG | - | chr5_2:10038848-10038867 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 10038814 | 10043811 | 10038814 | ID=Msa0756030;Name=Msa0756030 |
| chr5_2 | mRNA | 10038814 | 10043811 | 10038814 | ID=Msa0756030-mRNA-1;Parent=Msa0756030;Name=Msa0756030-mRNA-1;_AED=0.16;_eAED=0.16;_QI=102|1|1|1|1|1|10|216|609 |
| chr5_2 | exon | 10038814 | 10039269 | 10038814 | ID=Msa0756030-mRNA-1:exon:4613;Parent=Msa0756030-mRNA-1 |
| chr5_2 | exon | 10039553 | 10039640 | 10039553 | ID=Msa0756030-mRNA-1:exon:4614;Parent=Msa0756030-mRNA-1 |
| chr5_2 | exon | 10040192 | 10040400 | 10040192 | ID=Msa0756030-mRNA-1:exon:4615;Parent=Msa0756030-mRNA-1 |
| chr5_2 | exon | 10040521 | 10040672 | 10040521 | ID=Msa0756030-mRNA-1:exon:4616;Parent=Msa0756030-mRNA-1 |
| chr5_2 | exon | 10040947 | 10041370 | 10040947 | ID=Msa0756030-mRNA-1:exon:4617;Parent=Msa0756030-mRNA-1 |
| chr5_2 | exon | 10041672 | 10041769 | 10041672 | ID=Msa0756030-mRNA-1:exon:4618;Parent=Msa0756030-mRNA-1 |
| chr5_2 | exon | 10042299 | 10042410 | 10042299 | ID=Msa0756030-mRNA-1:exon:4619;Parent=Msa0756030-mRNA-1 |
| chr5_2 | exon | 10042522 | 10042681 | 10042522 | ID=Msa0756030-mRNA-1:exon:4620;Parent=Msa0756030-mRNA-1 |
| chr5_2 | exon | 10043189 | 10043261 | 10043189 | ID=Msa0756030-mRNA-1:exon:4621;Parent=Msa0756030-mRNA-1 |
| chr5_2 | exon | 10043436 | 10043811 | 10043436 | ID=Msa0756030-mRNA-1:exon:4622;Parent=Msa0756030-mRNA-1 |
| chr5_2 | five_prime_UTR | 10038814 | 10038915 | 10038814 | ID=Msa0756030-mRNA-1:five_prime_utr;Parent=Msa0756030-mRNA-1 |
| chr5_2 | CDS | 10038916 | 10039269 | 10038916 | ID=Msa0756030-mRNA-1:cds;Parent=Msa0756030-mRNA-1 |
| chr5_2 | CDS | 10039553 | 10039640 | 10039553 | ID=Msa0756030-mRNA-1:cds;Parent=Msa0756030-mRNA-1 |
| chr5_2 | CDS | 10040192 | 10040400 | 10040192 | ID=Msa0756030-mRNA-1:cds;Parent=Msa0756030-mRNA-1 |
| chr5_2 | CDS | 10040521 | 10040672 | 10040521 | ID=Msa0756030-mRNA-1:cds;Parent=Msa0756030-mRNA-1 |
| chr5_2 | CDS | 10040947 | 10041370 | 10040947 | ID=Msa0756030-mRNA-1:cds;Parent=Msa0756030-mRNA-1 |
| chr5_2 | CDS | 10041672 | 10041769 | 10041672 | ID=Msa0756030-mRNA-1:cds;Parent=Msa0756030-mRNA-1 |
| chr5_2 | CDS | 10042299 | 10042410 | 10042299 | ID=Msa0756030-mRNA-1:cds;Parent=Msa0756030-mRNA-1 |
| chr5_2 | CDS | 10042522 | 10042681 | 10042522 | ID=Msa0756030-mRNA-1:cds;Parent=Msa0756030-mRNA-1 |
| chr5_2 | CDS | 10043189 | 10043261 | 10043189 | ID=Msa0756030-mRNA-1:cds;Parent=Msa0756030-mRNA-1 |
| chr5_2 | CDS | 10043436 | 10043595 | 10043436 | ID=Msa0756030-mRNA-1:cds;Parent=Msa0756030-mRNA-1 |
| chr5_2 | three_prime_UTR | 10043596 | 10043811 | 10043596 | ID=Msa0756030-mRNA-1:three_prime_utr;Parent=Msa0756030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
