AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046100 MtrunA17_Chr1g0213391 91.837 833 46 6 1 827 1 817 0.0 1486
Msa0046100 MtrunA17_Chr1g0181831 55.874 732 241 20 104 809 174 849 0.0 701
Msa0046100 MtrunA17_Chr1g0181831 58.182 55 20 1 18 69 11 65 5.09e-13 73.2
Msa0046100 MtrunA17_Chr5g0448071 30.063 316 184 9 245 553 106 391 2.35e-37 144
Msa0046100 MtrunA17_Chr6g0456341 31.818 242 120 9 249 479 84 291 1.16e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046100 AT3G55020.1 61.962 836 262 15 10 822 15 817 0.0 938
Msa0046100 AT3G55020.3 64.868 760 229 13 10 754 15 751 0.0 903
Msa0046100 AT2G39280.1 61.214 758 255 14 20 761 10 744 0.0 835
Msa0046100 AT3G55020.2 63.561 719 222 14 10 712 15 709 0.0 830
Msa0046100 AT2G39280.2 60.662 755 253 15 23 761 41 767 0.0 813
Msa0046100 AT2G37290.1 55.572 691 233 16 124 798 209 841 0.0 687
Msa0046100 AT2G37290.1 49.367 79 38 2 23 101 16 92 2.35e-14 77.8
Msa0046100 AT2G37290.3 55.716 691 232 16 124 798 209 841 0.0 687
Msa0046100 AT2G37290.3 46.512 86 44 2 16 101 9 92 2.59e-14 77.8
Msa0046100 AT2G37290.2 53.611 720 236 16 124 798 209 875 0.0 679
Msa0046100 AT2G37290.2 49.367 79 38 2 23 101 16 92 2.47e-14 77.8
Msa0046100 AT3G07890.1 31.686 344 179 12 221 555 100 396 2.13e-40 154
Msa0046100 AT3G07890.4 31.686 344 179 12 221 555 100 396 2.13e-40 154
Msa0046100 AT3G07890.5 31.686 344 179 12 221 555 100 396 2.13e-40 154
Msa0046100 AT3G07890.2 31.686 344 179 12 221 555 100 396 2.13e-40 154
Msa0046100 AT3G07890.3 31.686 344 179 12 221 555 100 396 2.13e-40 154
Msa0046100 AT5G15930.1 32.083 240 122 8 249 479 82 289 2.22e-23 103
Msa0046100 AT3G02460.1 30.417 240 126 8 249 479 85 292 1.63e-20 94.7
Msa0046100 AT3G02460.4 30.417 240 126 8 249 479 85 292 2.18e-20 93.2
Msa0046100 AT3G02460.3 30.453 243 122 9 249 479 85 292 5.40e-20 92.8
Msa0046100 AT3G02460.2 30.702 228 112 8 249 464 85 278 6.10e-18 86.7
Msa0046100 AT3G02460.5 30.667 225 116 7 249 464 85 278 7.81e-18 85.5

Find 241 sgRNAs with CRISPR-Local

Find 635 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGAACTTCATTTATATTT+TGG 0.118339 1_1:+78128243 None:intergenic
ATCGGTATACAAACCCAATT+TGG 0.132514 1_1:+78128867 None:intergenic
TAGAACTGCAGTTGCTTTAA+TGG 0.133261 1_1:-78128485 Msa0046100:CDS
TTTCCCTCATGTTGACTTAC+AGG 0.231638 1_1:+78123427 None:intergenic
AGCCAATCATCTAGATTATC+TGG 0.233143 1_1:-78128751 Msa0046100:CDS
CTGGCCTCCAATGGTGATTC+TGG 0.238333 1_1:-78129807 Msa0046100:CDS
AATCAAAGTACAACAAGAAT+TGG 0.265388 1_1:+78122260 None:intergenic
ACTTATGCTTAAATGCCTTT+TGG 0.272181 1_1:+78122526 None:intergenic
GTGAGCTTAGCTCAATTGTT+AGG 0.274470 1_1:+78122355 None:intergenic
GCGGGAGAGGTTTCCCAAAT+TGG 0.277262 1_1:-78128881 Msa0046100:CDS
TTTCTAGATCCGGGAGATTC+TGG 0.277675 1_1:+78123678 None:intergenic
ATCTTATGGTTGACCATAAC+TGG 0.286814 1_1:+78130349 None:intergenic
GGGGAAGAGAACAAAGTTTC+TGG 0.290787 1_1:-78130513 Msa0046100:CDS
GGAGCTTGAAACAGCATTAA+TGG 0.291836 1_1:-78125838 Msa0046100:CDS
ATTCGTGTTAATAAGAAAAC+TGG 0.298462 1_1:-78130294 Msa0046100:CDS
GATCTGCCGCGGACATTTCC+TGG 0.303734 1_1:-78129570 Msa0046100:CDS
CTAGATACTCCTCTTGTTGA+TGG 0.308816 1_1:-78130111 Msa0046100:CDS
CTCTTGATTGTTTCTAGATC+CGG 0.309833 1_1:+78123668 None:intergenic
TTCTTGCTCCTCAAACCGTC+TGG 0.314143 1_1:+78123342 None:intergenic
AATTTATCCCGTACAGAATC+TGG 0.323143 1_1:-78128080 Msa0046100:CDS
GTTTAATATGACAAAATAAA+TGG 0.324098 1_1:-78122971 Msa0046100:three_prime_UTR
ATATGCTTCCCAAGTGCTTC+AGG 0.328257 1_1:-78124794 Msa0046100:intron
GGTGGTTGGGGTTTGAACTC+TGG 0.328751 1_1:-78122402 Msa0046100:three_prime_UTR
ACAGGAAACTGCAATGCTTC+AGG 0.337217 1_1:-78124979 Msa0046100:intron
CTTTCTCGACCATTTGGACT+TGG 0.337275 1_1:-78123609 Msa0046100:CDS
CGGGAGAGGTTTCCCAAATT+GGG 0.339474 1_1:-78128880 Msa0046100:CDS
AATGAGATTCCTAAATATAA+TGG 0.343970 1_1:-78123077 Msa0046100:three_prime_UTR
TTTCAGCTACTATGAATATA+AGG 0.348559 1_1:+78122696 None:intergenic
CTCGACCATTTGGACTTGGA+TGG 0.351641 1_1:-78123605 Msa0046100:CDS
TGAGTTAAAGAAATGTATAA+TGG 0.354742 1_1:-78122911 Msa0046100:three_prime_UTR
GCTGGTTCTTCCACATTAGT+AGG 0.355189 1_1:+78123463 None:intergenic
TCCTTTGTTGTTACCAAGGC+TGG 0.355345 1_1:+78128353 None:intergenic
GTTCTTTATTACTATGTCAT+AGG 0.356134 1_1:-78123252 Msa0046100:three_prime_UTR
GTGCAGGTTGCATGGGTGAC+TGG 0.357360 1_1:-78128726 Msa0046100:CDS
ATTTCCTGGTCACCCTGCTT+TGG 0.358219 1_1:-78129556 Msa0046100:CDS
TCGAATAATGCGCAAGTGCT+TGG 0.359101 1_1:-78128104 Msa0046100:CDS
GCTGATACTCCACCTGAAAA+TGG 0.359223 1_1:-78130423 Msa0046100:CDS
AGTATTAAGAGATGATCTTA+TGG 0.361165 1_1:+78130335 None:intergenic
TGTTATACAATTATCTAAAC+AGG 0.361819 1_1:-78122761 Msa0046100:three_prime_UTR
TATAAATGAAGTTCGATTGC+AGG 0.367487 1_1:-78128237 Msa0046100:CDS
TTGTGATCGAATGTAATTAC+AGG 0.371474 1_1:+78131267 None:intergenic
CACTAGAGGCTTCGTGTCCT+TGG 0.372322 1_1:-78130047 Msa0046100:CDS
GTTGCTTTAATGGAGCTATA+TGG 0.372455 1_1:-78128475 Msa0046100:intron
AACTGTTGCACTTGCAGAAA+TGG 0.384197 1_1:-78124127 Msa0046100:CDS
GCCCTTCCCCAGACGGTTTG+AGG 0.386727 1_1:-78123350 Msa0046100:three_prime_UTR
AGTTTGCTTTCTCGACCATT+TGG 0.398525 1_1:-78123615 Msa0046100:CDS
AGCTCAGAGAAGGGTGTTGA+TGG 0.400403 1_1:-78130459 Msa0046100:CDS
CGAATAATGCGCAAGTGCTT+GGG 0.402971 1_1:-78128103 Msa0046100:CDS
TAGTATTATGATCTGTATAA+AGG 0.408103 1_1:+78123150 None:intergenic
GAGATGGTTGCAGTTTAGTT+TGG 0.408611 1_1:+78124046 None:intergenic
CAAAAGGGCTTAAAGCTTTG+AGG 0.410424 1_1:-78128163 Msa0046100:CDS
CGTACTCACGGTATCTTTGC+AGG 0.412476 1_1:+78130842 None:intergenic
ATCAAAGTACAACAAGAATT+GGG 0.416799 1_1:+78122261 None:intergenic
ACCTCTCCCCTCAGTGCCAT+TGG 0.417402 1_1:+78129988 None:intergenic
TTAACCTGCTCTGGAAGATC+TGG 0.418284 1_1:+78127996 None:intergenic
TAGTCAAAAGGAGGAGTTAC+CGG 0.426816 1_1:-78130400 Msa0046100:CDS
AATGGAGAAGAGAGCAGTTA+TGG 0.428862 1_1:-78124109 Msa0046100:CDS
GCAATTGAAGAAAGATCAAA+AGG 0.430398 1_1:-78128179 Msa0046100:CDS
TTGAAGAGTTGGTGCGGGAG+AGG 0.436427 1_1:-78128894 Msa0046100:CDS
ATTAAAAGTAATCATCAAAA+CGG 0.438574 1_1:-78129783 Msa0046100:CDS
TCGACCATTTGGACTTGGAT+GGG 0.439304 1_1:-78123604 Msa0046100:CDS
AAGACGGAATTAACCTGCTC+TGG 0.441432 1_1:+78127987 None:intergenic
GAGTTAAAGAAATGTATAAT+GGG 0.441887 1_1:-78122910 Msa0046100:three_prime_UTR
TGAGCTTAGCTCAATTGTTA+GGG 0.447337 1_1:+78122356 None:intergenic
GCTTCCTTGGGAAAGTGGTC+AGG 0.448269 1_1:-78128673 Msa0046100:intron
CGACCATTTGGACTTGGATG+GGG 0.448956 1_1:-78123603 Msa0046100:CDS
TCGGTATACAAACCCAATTT+GGG 0.454846 1_1:+78128868 None:intergenic
GCGGGTAGAGAAGTATTATC+AGG 0.455990 1_1:-78129835 Msa0046100:CDS
ACTTTCTGATAAACAAGAAC+AGG 0.458805 1_1:-78124997 Msa0046100:CDS
TGCTGCTGCTGCACCACTAG+AGG 0.462754 1_1:-78130061 Msa0046100:CDS
GAGCGTTAGTAAGCAGATAC+TGG 0.463481 1_1:+78131401 None:intergenic
ATGCTAAGAGCAACTCCAAC+GGG 0.463639 1_1:-78122485 Msa0046100:three_prime_UTR
ATCTGGGAGTGCAGGTTGCA+TGG 0.464025 1_1:-78128734 Msa0046100:CDS
AGTTGAAGTTTCTAGATATG+TGG 0.464131 1_1:-78122449 Msa0046100:three_prime_UTR
AGAGGATATGATAGAGTCTC+AGG 0.467308 1_1:-78129036 Msa0046100:intron
GAGTTGGAAGTTCTTGTTCG+TGG 0.469569 1_1:-78130018 Msa0046100:CDS
TCAATTGCAGCTATTACAGC+TGG 0.470313 1_1:+78128194 None:intergenic
CTACCATCCTCGTCCAAAGC+AGG 0.473442 1_1:+78129543 None:intergenic
TCCCTCTGTTGGTTACTGTC+AGG 0.474299 1_1:-78129478 Msa0046100:intron
GAAGTATTATCAGGATCTAC+TGG 0.474674 1_1:-78129826 Msa0046100:CDS
AGCTCCAGATCTTCCAGAGC+AGG 0.477837 1_1:-78128000 Msa0046100:intron
TCCCAGATAATCTAGATGAT+TGG 0.479830 1_1:+78128749 None:intergenic
AAAAGGGCTTAAAGCTTTGA+GGG 0.481358 1_1:-78128162 Msa0046100:CDS
TTAAAAGTAATCATCAAAAC+GGG 0.485896 1_1:-78129782 Msa0046100:CDS
TCTTGATTGTTTCTAGATCC+GGG 0.486136 1_1:+78123669 None:intergenic
TGCCTGAGGAAAATGCCTTT+TGG 0.488127 1_1:-78129310 Msa0046100:intron
ACTGACTGTGTGAGCGAGAA+TGG 0.488132 1_1:+78131469 None:intergenic
GTAAGTCAACATGAGGGAAA+TGG 0.490157 1_1:-78123424 Msa0046100:CDS
TGGTCACCCTGCTTTGGACG+AGG 0.490278 1_1:-78129550 Msa0046100:CDS
CTCCTCAAACCGTCTGGGGA+AGG 0.490703 1_1:+78123348 None:intergenic
TACTTCAGTGCTTCGAGTGT+GGG 0.492239 1_1:-78128545 Msa0046100:intron
TTCCCTCATGTTGACTTACA+GGG 0.493592 1_1:+78123428 None:intergenic
ACCTGAAAATGGTAGTCAAA+AGG 0.493903 1_1:-78130412 Msa0046100:CDS
AATTCCAGAATCACCATTGG+AGG 0.496500 1_1:+78129803 None:intergenic
AGTTGGAAGTTCTTGTTCGT+GGG 0.497626 1_1:-78130017 Msa0046100:CDS
ACAGGGCTTTCTACTACAGC+TGG 0.498797 1_1:+78123445 None:intergenic
CGAGACAGAGTCTTCTGTAT+TGG 0.501438 1_1:-78130556 Msa0046100:CDS
TTTGAGGGATGCTAAGGGTC+TGG 0.503136 1_1:-78128147 Msa0046100:CDS
CCCTTCTCTGAGCTAGCATC+AGG 0.503203 1_1:+78130468 None:intergenic
AGAAAAGATCAGCTATTCTC+AGG 0.504550 1_1:-78126655 Msa0046100:intron
CGGTATCTTTGCAGGTGTTG+AGG 0.504674 1_1:+78130850 None:intergenic
AGCATCCTTTGTTGTTACCA+AGG 0.504710 1_1:+78128349 None:intergenic
GGGAGTTCCAATGGCACTGA+GGG 0.506042 1_1:-78129995 Msa0046100:CDS
GGCTTGAGTACCTCAACAAA+TGG 0.507338 1_1:-78130090 Msa0046100:CDS
GCGGGTAGAGCAAGAACAAA+AGG 0.510673 1_1:-78124866 Msa0046100:CDS
TAAAGCTTTGAGGGATGCTA+AGG 0.510952 1_1:-78128153 Msa0046100:CDS
TTTAATTCCAGAATCACCAT+TGG 0.511424 1_1:+78129800 None:intergenic
CAAATTAGTGTGAGGACTCG+AGG 0.512153 1_1:-78122595 Msa0046100:three_prime_UTR
TCTTGCTCCTCAAACCGTCT+GGG 0.512390 1_1:+78123343 None:intergenic
GATGGTGCAAAATCATCAAA+AGG 0.513893 1_1:-78130192 Msa0046100:CDS
ACTTTACTTCAGTCATTAGC+CGG 0.514238 1_1:-78128314 Msa0046100:CDS
AGATGGTTAAGCAGGACAAC+AGG 0.514494 1_1:-78125815 Msa0046100:CDS
CTCACTTTATGCAGATTGCA+TGG 0.515543 1_1:-78126709 Msa0046100:intron
AAAAGGTAACCTGAAGCACT+TGG 0.516055 1_1:+78124785 None:intergenic
CGTTAAAGTACAAGATGAGT+TGG 0.517468 1_1:-78123401 Msa0046100:CDS
TCCTCAAACCGTCTGGGGAA+GGG 0.518435 1_1:+78123349 None:intergenic
ACTTCCAACTCTTCTTTCCA+AGG 0.520731 1_1:+78130030 None:intergenic
ATCATCTCTTAATACTATTG+AGG 0.521914 1_1:-78130328 Msa0046100:CDS
TCGTCCAAAGCAGGGTGACC+AGG 0.522777 1_1:+78129552 None:intergenic
ATTAATGGAGATGGTTAAGC+AGG 0.523073 1_1:-78125823 Msa0046100:CDS
GCAAACTTATCCTCCTGGTA+GGG 0.524898 1_1:+78123631 None:intergenic
GAATTCATAGAGTCCAGTTA+TGG 0.526092 1_1:-78130362 Msa0046100:CDS
ATGTCATAGGATAATAGTAT+TGG 0.527576 1_1:-78123239 Msa0046100:three_prime_UTR
TTGATTAGTCTTACTGGAGA+GGG 0.527695 1_1:-78128035 Msa0046100:CDS
ATCATCTAAAATGCCCATCA+AGG 0.531529 1_1:+78129079 None:intergenic
GCTACTTTGCAGTATCAGTC+TGG 0.532281 1_1:-78124069 Msa0046100:CDS
TTGTAGAACCAGATTCTGTA+CGG 0.533433 1_1:+78128072 None:intergenic
GTACTTCAGTGCTTCGAGTG+TGG 0.533468 1_1:-78128546 Msa0046100:intron
ATTCTAGTCTCCTCGGATGC+CGG 0.534883 1_1:+78130381 None:intergenic
GGGCAGTTAGATGACAATGA+TGG 0.535831 1_1:-78129762 Msa0046100:CDS
ACTGCTATCAAATGTGGAGC+CGG 0.536559 1_1:+78128295 None:intergenic
TGAAACAGCATTAATGGAGA+TGG 0.538013 1_1:-78125832 Msa0046100:CDS
TCACCCCATCCAAGTCCAAA+TGG 0.538801 1_1:+78123600 None:intergenic
CTTAAAACATACCGTGGAGA+TGG 0.540060 1_1:+78124030 None:intergenic
TTGGTAACAACAAAGGATGC+TGG 0.541111 1_1:-78128347 Msa0046100:CDS
TAAAGAAATGTATAATGGGA+TGG 0.543872 1_1:-78122906 Msa0046100:three_prime_UTR
TCTAGATTATCTGGGAGTGC+AGG 0.544285 1_1:-78128742 Msa0046100:CDS
AGAAAGCAAACTTATCCTCC+TGG 0.545441 1_1:+78123626 None:intergenic
TCACTTTGCCCTTCCCCAGA+CGG 0.545776 1_1:-78123357 Msa0046100:three_prime_UTR
ACCTGATGCTAGCTCAGAGA+AGG 0.548837 1_1:-78130469 Msa0046100:CDS
GTGTCCTTGGAAAGAAGAGT+TGG 0.552169 1_1:-78130034 Msa0046100:CDS
TGTGTCAACAGGGATGCCTA+TGG 0.558632 1_1:-78130886 Msa0046100:intron
CTGGTAGGGGTATCCATCGT+AGG 0.559442 1_1:+78123645 None:intergenic
ACAAGAGGAGTATCTAGACT+AGG 0.560908 1_1:+78130117 None:intergenic
AGTTATGGCTGAGTCTATGC+TGG 0.562409 1_1:-78124094 Msa0046100:CDS
AGGTGTGGTAAAAGATGAGC+TGG 0.563044 1_1:-78130244 Msa0046100:CDS
TCTTCACAGCCAGAATCTCC+CGG 0.563964 1_1:-78123687 Msa0046100:CDS
GGCAGTTAGATGACAATGAT+GGG 0.564494 1_1:-78129761 Msa0046100:CDS
AAAGATGAAAGAAATAAGAA+AGG 0.564961 1_1:-78130264 Msa0046100:CDS
CAGTTCTAAATAGCATGACT+CGG 0.565813 1_1:+78128500 None:intergenic
CACCCTGCTTTGGACGAGGA+TGG 0.566489 1_1:-78129546 Msa0046100:CDS
TGTGGGTGTCAAAGCAAGGC+GGG 0.567027 1_1:-78129853 Msa0046100:CDS
AACATGCTTCCTTGGGAAAG+TGG 0.568071 1_1:-78128678 Msa0046100:CDS
CTTGCTCCTCAAACCGTCTG+GGG 0.570168 1_1:+78123344 None:intergenic
AAGAGGAAAGGTCCGAGCGG+TGG 0.571481 1_1:-78130602 Msa0046100:CDS
TCTATGAATTCTAGTCTCCT+CGG 0.571616 1_1:+78130374 None:intergenic
TCCAATGGCACTGAGGGGAG+AGG 0.572143 1_1:-78129989 Msa0046100:intron
ATCATCAAAAGGAGCATGTG+AGG 0.573179 1_1:-78130181 Msa0046100:CDS
TGTAGAACCAGATTCTGTAC+GGG 0.579242 1_1:+78128073 None:intergenic
GCCAATCATCTAGATTATCT+GGG 0.580459 1_1:-78128750 Msa0046100:CDS
CAGGATCTACTGGCCTCCAA+TGG 0.580957 1_1:-78129816 Msa0046100:CDS
GCTCGACATAATCCCTCTGT+TGG 0.584398 1_1:-78129489 Msa0046100:CDS
TTTGATTAGTCTTACTGGAG+AGG 0.585523 1_1:-78128036 Msa0046100:CDS
CAAACTTATCCTCCTGGTAG+GGG 0.586096 1_1:+78123632 None:intergenic
GCACACTCATCAAGCGGTGT+GGG 0.586604 1_1:+78131446 None:intergenic
GGAGGAGTTACCGGCATCCG+AGG 0.588034 1_1:-78130391 Msa0046100:CDS
TGGATGGGGTGATCGAAACA+AGG 0.588081 1_1:-78123589 Msa0046100:intron
CTACGATGGATACCCCTACC+AGG 0.588101 1_1:-78123644 Msa0046100:CDS
TTCAGGAGGAAGAAGAGGAA+AGG 0.588650 1_1:-78130614 Msa0046100:intron
TACCATCCTCGTCCAAAGCA+GGG 0.589974 1_1:+78129544 None:intergenic
TATTATATATAAAAGTGAGA+AGG 0.590859 1_1:-78123108 Msa0046100:three_prime_UTR
TCTGGGAGTGCAGGTTGCAT+GGG 0.591256 1_1:-78128733 Msa0046100:CDS
GCTCAGAGAAGGGTGTTGAT+GGG 0.591623 1_1:-78130458 Msa0046100:CDS
AGCAGCAATACCATTTGTTG+AGG 0.591699 1_1:+78130080 None:intergenic
CAAGAGGAGTATCTAGACTA+GGG 0.592003 1_1:+78130118 None:intergenic
AAAAGGTTACAGAGGATGCT+CGG 0.593286 1_1:-78124849 Msa0046100:CDS
CAATACAGAAGACTCTGTCT+CGG 0.596388 1_1:+78130557 None:intergenic
GTTTCTGGTGCTGAATCTGT+AGG 0.597964 1_1:-78130498 Msa0046100:CDS
ATGTCTTGTAGGTCCAGCCT+TGG 0.598613 1_1:-78128366 Msa0046100:intron
ATAGGGGAAACCTACTAATG+TGG 0.602696 1_1:-78123473 Msa0046100:intron
GGTTAAGCAGGACAACAGGC+GGG 0.603079 1_1:-78125811 Msa0046100:CDS
ATTTCTGATAGGTCTTGATG+CGG 0.605171 1_1:-78124885 Msa0046100:intron
GCAAGAACAAAAGGTTACAG+AGG 0.606679 1_1:-78124857 Msa0046100:CDS
TGCACACTCATCAAGCGGTG+TGG 0.606794 1_1:+78131445 None:intergenic
TAATGGAAAAGTAAATTGAG+TGG 0.610830 1_1:-78123060 Msa0046100:three_prime_UTR
GGTAGAGCGACTAGAAGAAG+AGG 0.611682 1_1:-78125039 Msa0046100:CDS
CATGCTAAGAGCAACTCCAA+CGG 0.613629 1_1:-78122486 Msa0046100:three_prime_UTR
AAGCTGACTGCTATCAAATG+TGG 0.615286 1_1:+78128289 None:intergenic
CTTCAAGCTAACAGACCCGT+TGG 0.616500 1_1:+78122470 None:intergenic
TGTAAATGCTAGCGTACTCA+CGG 0.616978 1_1:+78130830 None:intergenic
AAAGGTAACCTGAAGCACTT+GGG 0.617219 1_1:+78124786 None:intergenic
TGGTTAAGCAGGACAACAGG+CGG 0.617927 1_1:-78125812 Msa0046100:CDS
AAGCCCTGTAAGTCAACATG+AGG 0.619652 1_1:-78123431 Msa0046100:CDS
AGGTCGCACAGTAAATCCAT+AGG 0.619964 1_1:+78130870 None:intergenic
AGGAGCTGAGGAATAAACAT+AGG 0.621180 1_1:-78128217 Msa0046100:CDS
CAAGGACACGAAGCCTCTAG+TGG 0.621659 1_1:+78130048 None:intergenic
TATAACAACAAAATTACAGA+CGG 0.621669 1_1:+78123312 None:intergenic
AGCAAACTTATCCTCCTGGT+AGG 0.622299 1_1:+78123630 None:intergenic
TTGAGCTAAGCTCACAATGA+CGG 0.623778 1_1:-78122347 Msa0046100:three_prime_UTR
TAATTACATTCGATCACAAG+AGG 0.624018 1_1:-78131263 Msa0046100:intron
AAATTAGTGTGAGGACTCGA+GGG 0.624983 1_1:-78122594 Msa0046100:three_prime_UTR
TTGGAAGTTCTTGTTCGTGG+GGG 0.625449 1_1:-78130015 Msa0046100:CDS
GCACATGCACACTCATCAAG+CGG 0.625693 1_1:+78131440 None:intergenic
TTGCATGGGTGACTGGACCA+TGG 0.630069 1_1:-78128719 Msa0046100:CDS
TGAGTACGCTAGCATTTACA+AGG 0.633990 1_1:-78130827 Msa0046100:intron
GTTGGAAGTTCTTGTTCGTG+GGG 0.634337 1_1:-78130016 Msa0046100:CDS
GAGTCACTATCTCTTGCTGA+TGG 0.635928 1_1:-78130210 Msa0046100:CDS
TGAAAGAAATAAGAAAGGTG+TGG 0.636747 1_1:-78130259 Msa0046100:CDS
AAGTTCGATTGCAGGAGCTG+AGG 0.637148 1_1:-78128229 Msa0046100:CDS
GACACAAACAGAATACCTGT+GGG 0.637309 1_1:-78130534 Msa0046100:CDS
TCCAGCCTTGGTAACAACAA+AGG 0.637738 1_1:-78128354 Msa0046100:CDS
GGGGAGTTCCAATGGCACTG+AGG 0.638061 1_1:-78129996 Msa0046100:CDS
AGGAGTTCTATGATGTTGAG+AGG 0.638153 1_1:-78130146 Msa0046100:CDS
ATGGAAAGGACAGATTGAGA+AGG 0.639006 1_1:-78129703 Msa0046100:intron
GGACACAAACAGAATACCTG+TGG 0.639412 1_1:-78130535 Msa0046100:CDS
TTTCTGATAGGTCTTGATGC+GGG 0.639713 1_1:-78124884 Msa0046100:intron
AAAGCTTTGAGGGATGCTAA+GGG 0.642149 1_1:-78128152 Msa0046100:CDS
ACCTGACAGTAACCAACAGA+GGG 0.642883 1_1:+78129477 None:intergenic
GACAACGCATAATATATGCA+AGG 0.647196 1_1:+78122378 None:intergenic
CAATTGAAGAAAGATCAAAA+GGG 0.650314 1_1:-78128178 Msa0046100:CDS
TGAAAATGGTAGTCAAAAGG+AGG 0.652128 1_1:-78130409 Msa0046100:CDS
CACAAACAGAATACCTGTGG+GGG 0.652862 1_1:-78130532 Msa0046100:CDS
GTACTCAAGCCATCAACAAG+AGG 0.653340 1_1:+78130102 None:intergenic
AAACAATCAAGAGCCTACGA+TGG 0.655319 1_1:-78123658 Msa0046100:CDS
CTAAACTGCAACCATCTCCA+CGG 0.655642 1_1:-78124041 Msa0046100:intron
TTCGTGTTAATAAGAAAACT+GGG 0.656298 1_1:-78130293 Msa0046100:CDS
GAGTTAAACAAATTAGTGTG+AGG 0.658730 1_1:-78122603 Msa0046100:three_prime_UTR
CAGGCGGGAACTGAGCGCCA+AGG 0.658763 1_1:-78125796 Msa0046100:intron
CCTGATGCTAGCTCAGAGAA+GGG 0.661370 1_1:-78130468 Msa0046100:CDS
GGGTGACCAGGAAATGTCCG+CGG 0.668654 1_1:+78129564 None:intergenic
AAAACCTGACCACTTTCCCA+AGG 0.674975 1_1:+78128669 None:intergenic
TTGTGGGTGTCAAAGCAAGG+CGG 0.684016 1_1:-78129854 Msa0046100:CDS
GGAGTTCCAATGGCACTGAG+GGG 0.686267 1_1:-78129994 Msa0046100:CDS
GACCTGACAGTAACCAACAG+AGG 0.688150 1_1:+78129476 None:intergenic
AGCCCTGTAAGTCAACATGA+GGG 0.698307 1_1:-78123430 Msa0046100:CDS
ATGTGAGGAAGATTCTGACG+AGG 0.698919 1_1:-78130166 Msa0046100:CDS
TGTTTGTGCAGGATCTGCCG+CGG 0.713471 1_1:-78129581 Msa0046100:intron
AAATAACGAGAGCTACAATG+TGG 0.721563 1_1:+78122294 None:intergenic
AAGAAGAGGAAAGGTCCGAG+CGG 0.722767 1_1:-78130605 Msa0046100:CDS
CGATGGATACCCCTACCAGG+AGG 0.749834 1_1:-78123641 Msa0046100:CDS
ACACAAACAGAATACCTGTG+GGG 0.755400 1_1:-78130533 Msa0046100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATATTTATTTTGAAAAAAA+TGG + chr1_1:78122839-78122858 None:intergenic 10.0%
!! ATTAAAATATTGAAAAATAC+CGG + chr1_1:78124363-78124382 None:intergenic 10.0%
!! AAAAATAAAAATATGTAAGT+GGG + chr1_1:78128185-78128204 None:intergenic 10.0%
!! AAAAAATAAAAATATGTAAG+TGG + chr1_1:78128186-78128205 None:intergenic 10.0%
!!! TACATATTTTTATTTTTTGA+TGG - chr1_1:78128188-78128207 Msa0046100:CDS 10.0%
!!! ACATATTTTTATTTTTTGAT+GGG - chr1_1:78128189-78128208 Msa0046100:CDS 10.0%
!!! TTTTATTAAATAGAAGAAAT+TGG + chr1_1:78129934-78129953 None:intergenic 10.0%
!!! TTCATAATATTCATATTTTT+TGG - chr1_1:78131027-78131046 Msa0046100:intron 10.0%
!!! TCATAATATTCATATTTTTT+GGG - chr1_1:78131028-78131047 Msa0046100:intron 10.0%
!! TCTCATATTTATAATATGAT+GGG + chr1_1:78123796-78123815 None:intergenic 15.0%
!! ATCTCATATTTATAATATGA+TGG + chr1_1:78123797-78123816 None:intergenic 15.0%
!! ATTAAAAGTAATCATCAAAA+CGG - chr1_1:78123974-78123993 Msa0046100:intron 15.0%
!! TTAAAATATTGAAAAATACC+GGG + chr1_1:78124362-78124381 None:intergenic 15.0%
!!! ATTTTAGATGATTATTTTGA+TGG - chr1_1:78124689-78124708 Msa0046100:intron 15.0%
!!! AAATACATATTCATTTTATC+AGG - chr1_1:78124825-78124844 Msa0046100:CDS 15.0%
!! ACAAATAATTACAATAAATC+AGG + chr1_1:78125193-78125212 None:intergenic 15.0%
!! TACAAATAAAACAAGATATA+TGG + chr1_1:78126885-78126904 None:intergenic 15.0%
!! AAGAAAATAAAGAAAGATAT+AGG - chr1_1:78127188-78127207 Msa0046100:intron 15.0%
!! GTATCAATTTAAATTACAAA+AGG - chr1_1:78127831-78127850 Msa0046100:intron 15.0%
!! AATAAAATTTGAAAGAGAAA+AGG + chr1_1:78128992-78129011 None:intergenic 15.0%
!!! AACATACTATTTTTTCATTA+TGG - chr1_1:78129165-78129184 Msa0046100:intron 15.0%
!! TTCAAATTATTATTACAGAA+GGG + chr1_1:78129368-78129387 None:intergenic 15.0%
!! ATTCAAATTATTATTACAGA+AGG + chr1_1:78129369-78129388 None:intergenic 15.0%
!!! ATCATATTTTATTATTTTGC+AGG - chr1_1:78129591-78129610 Msa0046100:intron 15.0%
!! CAAAAAAAGAATAATAGTAT+TGG - chr1_1:78130553-78130572 Msa0046100:CDS 15.0%
!! TATTATATATAAAAGTGAGA+AGG - chr1_1:78130649-78130668 Msa0046100:intron 15.0%
!!! TTTACTTTTCCATTATATTT+AGG + chr1_1:78130692-78130711 None:intergenic 15.0%
!! GTTTAATATGACAAAATAAA+TGG - chr1_1:78130786-78130805 Msa0046100:intron 15.0%
!!! AATTTAAAGACCTTTTTTTT+AGG - chr1_1:78130894-78130913 Msa0046100:intron 15.0%
!!! ATTTAAAGACCTTTTTTTTA+GGG - chr1_1:78130895-78130914 Msa0046100:intron 15.0%
!!! CATAATATTCATATTTTTTG+GGG - chr1_1:78131029-78131048 Msa0046100:intron 15.0%
!!! ATAATATTCATATTTTTTGG+GGG - chr1_1:78131030-78131049 Msa0046100:intron 15.0%
!! ACGGTTAAAAATTGAAAAAA+AGG + chr1_1:78122614-78122633 None:intergenic 20.0%
!! TAGAAAGATAAAAGCAAAAA+CGG + chr1_1:78122633-78122652 None:intergenic 20.0%
!!! GTTTACAATTTTTACTTTTC+AGG - chr1_1:78123126-78123145 Msa0046100:three_prime_UTR 20.0%
!!! CTTATTTCTTTCATCTTTTA+CGG + chr1_1:78123491-78123510 None:intergenic 20.0%
!! AAAGATGAAAGAAATAAGAA+AGG - chr1_1:78123493-78123512 Msa0046100:intron 20.0%
!! TTAAAAGTAATCATCAAAAC+GGG - chr1_1:78123975-78123994 Msa0046100:intron 20.0%
!!! TTTATAAAAGAAGTTTTTCC+CGG - chr1_1:78124341-78124360 Msa0046100:intron 20.0%
!!! TCAATATTTTAATGACTTGT+TGG - chr1_1:78124370-78124389 Msa0046100:intron 20.0%
!!! CAATATTTTAATGACTTGTT+GGG - chr1_1:78124371-78124390 Msa0046100:intron 20.0%
!! GACATGAAAAAGATTTAAAT+CGG + chr1_1:78124911-78124930 None:intergenic 20.0%
!! AATAATTACAATAAATCAGG+AGG + chr1_1:78125190-78125209 None:intergenic 20.0%
!!! TGAAAATGTTTGTTGTTTAT+TGG - chr1_1:78125312-78125331 Msa0046100:intron 20.0%
!!! ATCGAACTTCATTTATATTT+TGG + chr1_1:78125517-78125536 None:intergenic 20.0%
!! TTAAAGATAAATGCACTAAT+TGG + chr1_1:78125963-78125982 None:intergenic 20.0%
!! TATTATGCAAATGTTTATCA+AGG + chr1_1:78126051-78126070 None:intergenic 20.0%
!! AAACATTTGCATAATACTTA+TGG - chr1_1:78126055-78126074 Msa0046100:intron 20.0%
!! TTTATCAAGGAATAAAATTG+AGG + chr1_1:78126201-78126220 None:intergenic 20.0%
!!! TAAACATGTGAAAATGTTTT+TGG - chr1_1:78126217-78126236 Msa0046100:intron 20.0%
!! TTTGAAAACCTAATTTGAAA+AGG - chr1_1:78126435-78126454 Msa0046100:intron 20.0%
!! TTATCTCCTATAAAAAGTTT+AGG - chr1_1:78126517-78126536 Msa0046100:intron 20.0%
!!! TTTAGTTTTACTTGAATGAA+TGG - chr1_1:78126559-78126578 Msa0046100:intron 20.0%
!!! CTATCTGTTTTTTTTTTGTT+CGG + chr1_1:78126591-78126610 None:intergenic 20.0%
!! AAAAAAAAACAGATAGTGAA+AGG - chr1_1:78126595-78126614 Msa0046100:intron 20.0%
!! TACTAATAAAGATTTCACAT+GGG + chr1_1:78126749-78126768 None:intergenic 20.0%
!! TTACTAATAAAGATTTCACA+TGG + chr1_1:78126750-78126769 None:intergenic 20.0%
!!! ATTTATCCTCTATTTTAACT+TGG + chr1_1:78126783-78126802 None:intergenic 20.0%
!!! TTTTTTAAATAACTTAGCCA+CGG - chr1_1:78126828-78126847 Msa0046100:intron 20.0%
!!! CTTTAGATTGATGATTATTA+AGG + chr1_1:78126986-78127005 None:intergenic 20.0%
!! CTTAATAATCATCAATCTAA+AGG - chr1_1:78126984-78127003 Msa0046100:intron 20.0%
!!! GGTAAGAATTCTTTTTTAAA+TGG - chr1_1:78127149-78127168 Msa0046100:intron 20.0%
!!! TCTACAATTAGATTGTATTT+TGG + chr1_1:78127242-78127261 None:intergenic 20.0%
!!! TGGTTTTTATTCTTCAAATT+GGG + chr1_1:78128301-78128320 None:intergenic 20.0%
!!! TTGGTTTTTATTCTTCAAAT+TGG + chr1_1:78128302-78128321 None:intergenic 20.0%
!!! TAATAAGAAAACACCAATTT+TGG + chr1_1:78128453-78128472 None:intergenic 20.0%
!! AATATAGAATATGCCAAAAA+TGG + chr1_1:78128514-78128533 None:intergenic 20.0%
!! ATACTTTCTTTAAGCAAAAT+AGG - chr1_1:78128823-78128842 Msa0046100:intron 20.0%
!!! TGTAAGAATTTATTTCTGAT+AGG - chr1_1:78128861-78128880 Msa0046100:intron 20.0%
!!! AAAATTTTACCCTTAATGTA+GGG + chr1_1:78129324-78129343 None:intergenic 20.0%
!!! TAAAATTTTACCCTTAATGT+AGG + chr1_1:78129325-78129344 None:intergenic 20.0%
!! TGTAATAATAATTTGAATGC+TGG - chr1_1:78129371-78129390 Msa0046100:intron 20.0%
!! AAATATAATTTAGCAGTACA+AGG + chr1_1:78129522-78129541 None:intergenic 20.0%
!! TTATATTTCAATCATCACAA+TGG - chr1_1:78129534-78129553 Msa0046100:CDS 20.0%
!!! AGAAATTGGTGTTTATTTTT+GGG + chr1_1:78129920-78129939 None:intergenic 20.0%
!!! AAGAAATTGGTGTTTATTTT+TGG + chr1_1:78129921-78129940 None:intergenic 20.0%
!! TATAACAACAAAATTACAGA+CGG + chr1_1:78130448-78130467 None:intergenic 20.0%
!! TAGTATTATGATCTGTATAA+AGG + chr1_1:78130610-78130629 None:intergenic 20.0%
!! AATGAGATTCCTAAATATAA+TGG - chr1_1:78130680-78130699 Msa0046100:intron 20.0%
!!! TGAGTGGATAATATTTTTAA+AGG - chr1_1:78130713-78130732 Msa0046100:intron 20.0%
!!! CTTTAACTCATTCAATTTTA+TGG + chr1_1:78130836-78130855 None:intergenic 20.0%
!! TGAGTTAAAGAAATGTATAA+TGG - chr1_1:78130846-78130865 Msa0046100:CDS 20.0%
!! GAGTTAAAGAAATGTATAAT+GGG - chr1_1:78130847-78130866 Msa0046100:CDS 20.0%
!! TATTACATTCCCTAAAAAAA+AGG + chr1_1:78130907-78130926 None:intergenic 20.0%
!! TGTTATACAATTATCTAAAC+AGG - chr1_1:78130996-78131015 Msa0046100:intron 20.0%
!!! TAATATTCATATTTTTTGGG+GGG - chr1_1:78131031-78131050 Msa0046100:intron 20.0%
!!! TTTGTTTGTTTTTTTTCTTC+TGG - chr1_1:78131334-78131353 Msa0046100:five_prime_UTR 20.0%
!!! ATTTTGTTTGTTTAAACTGT+TGG - chr1_1:78131434-78131453 Msa0046100:five_prime_UTR 20.0%
!!! TTTTGTTTGTTTAAACTGTT+GGG - chr1_1:78131435-78131454 Msa0046100:five_prime_UTR 20.0%
!! GAAATACAGATTTTCTGATT+TGG + chr1_1:78123085-78123104 None:intergenic 25.0%
! ATTGTAAACACAAAAGAAGT+GGG + chr1_1:78123115-78123134 None:intergenic 25.0%
! AATTGTAAACACAAAAGAAG+TGG + chr1_1:78123116-78123135 None:intergenic 25.0%
!!! TACAATTTTTACTTTTCAGG+AGG - chr1_1:78123129-78123148 Msa0046100:three_prime_UTR 25.0%
! AGTATTAAGAGATGATCTTA+TGG + chr1_1:78123425-78123444 None:intergenic 25.0%
! ATCATCTCTTAATACTATTG+AGG - chr1_1:78123429-78123448 Msa0046100:CDS 25.0%
! ATTCGTGTTAATAAGAAAAC+TGG - chr1_1:78123463-78123482 Msa0046100:CDS 25.0%
! TTCGTGTTAATAAGAAAACT+GGG - chr1_1:78123464-78123483 Msa0046100:CDS 25.0%
! AAATCCAAGAAAGCTTAATA+AGG + chr1_1:78124478-78124497 None:intergenic 25.0%
!! AAATAGCTTCATCCTTTTAA+AGG - chr1_1:78124546-78124565 Msa0046100:intron 25.0%
! ATAGCTAGTACAAATTAGTA+CGG + chr1_1:78124643-78124662 None:intergenic 25.0%
!! TACATATTCATTTTATCAGG+TGG - chr1_1:78124828-78124847 Msa0046100:CDS 25.0%
! CAATTGAAGAAAGATCAAAA+GGG - chr1_1:78125579-78125598 Msa0046100:intron 25.0%
!!! GAAATTTTGATTAGTCTTAC+TGG - chr1_1:78125716-78125735 Msa0046100:intron 25.0%
!!! GTTTTTTTAACTTTCTGTCT+TGG + chr1_1:78125912-78125931 None:intergenic 25.0%
! AGTTATATAACATGTTCATG+AGG - chr1_1:78125932-78125951 Msa0046100:intron 25.0%
!! ACATTTTCACATGTTTATCA+AGG + chr1_1:78126214-78126233 None:intergenic 25.0%
!! AATTAGGTTTTCAAAGTAAC+AGG + chr1_1:78126430-78126449 None:intergenic 25.0%
! TCCTATAAAAAGTTTAGGAA+AGG - chr1_1:78126522-78126541 Msa0046100:intron 25.0%
!! ACCTTTCCTAAACTTTTTAT+AGG + chr1_1:78126526-78126545 None:intergenic 25.0%
! TAAAAAGTTTAGGAAAGGTT+AGG - chr1_1:78126527-78126546 Msa0046100:intron 25.0%
!! ATTACATGATGCTGTTATTT+AGG - chr1_1:78126665-78126684 Msa0046100:CDS 25.0%
!!! TGCTGTTATTTAGGTTTTTA+TGG - chr1_1:78126674-78126693 Msa0046100:CDS 25.0%
! TAAAGTATAATTGTATTCCG+TGG + chr1_1:78126848-78126867 None:intergenic 25.0%
! ACAAGATATATGGTCATTTA+TGG + chr1_1:78126875-78126894 None:intergenic 25.0%
! TAAATGGAGATATGAAAGTA+TGG - chr1_1:78127165-78127184 Msa0046100:intron 25.0%
!!! TAGAAACTGACTTTTATTGA+TGG - chr1_1:78127258-78127277 Msa0046100:intron 25.0%
!! TTCTAAATTTAGAACACTCA+CGG + chr1_1:78127443-78127462 None:intergenic 25.0%
!!! TTTTTTACATTTGAAGAGCT+TGG - chr1_1:78127636-78127655 Msa0046100:intron 25.0%
!! TTTTTACATTTGAAGAGCTT+GGG - chr1_1:78127637-78127656 Msa0046100:intron 25.0%
! ACATAATAATAAGATTAGCG+TGG - chr1_1:78127782-78127801 Msa0046100:intron 25.0%
! TAAATGTTACATGCAAAAGT+GGG + chr1_1:78127865-78127884 None:intergenic 25.0%
! ATAAATGTTACATGCAAAAG+TGG + chr1_1:78127866-78127885 None:intergenic 25.0%
! ATGGATATGATAATAAACCA+TGG + chr1_1:78128276-78128295 None:intergenic 25.0%
!! GGTTTTTATTCTTCAAATTG+GGG + chr1_1:78128300-78128319 None:intergenic 25.0%
!! AATATTGCGTTATCCATTTT+TGG - chr1_1:78128498-78128517 Msa0046100:CDS 25.0%
!! TGGCATATTCTATATTTTCT+TGG - chr1_1:78128518-78128537 Msa0046100:CDS 25.0%
!! TTTTCATTATGGTATTCGTT+AGG - chr1_1:78129176-78129195 Msa0046100:intron 25.0%
! TAGTGCATTTAAAAGAAGTA+TGG + chr1_1:78129438-78129457 None:intergenic 25.0%
! AGCTAAACCCAAAAAAATTT+GGG + chr1_1:78129789-78129808 None:intergenic 25.0%
! AAGCTAAACCCAAAAAAATT+TGG + chr1_1:78129790-78129809 None:intergenic 25.0%
!!! GAAATTGGTGTTTATTTTTG+GGG + chr1_1:78129919-78129938 None:intergenic 25.0%
! ATAAAAATGTCAAAAGTTGC+TGG - chr1_1:78129948-78129967 Msa0046100:intron 25.0%
!!! GTCTGTAATTTTGTTGTTAT+AGG - chr1_1:78130447-78130466 Msa0046100:CDS 25.0%
! GTTCTTTATTACTATGTCAT+AGG - chr1_1:78130505-78130524 Msa0046100:CDS 25.0%
! ATGTCATAGGATAATAGTAT+TGG - chr1_1:78130518-78130537 Msa0046100:CDS 25.0%
! TAATGGAAAAGTAAATTGAG+TGG - chr1_1:78130697-78130716 Msa0046100:intron 25.0%
!! CATTCAATTTTATGGACAAT+GGG + chr1_1:78130828-78130847 None:intergenic 25.0%
!! TCATTCAATTTTATGGACAA+TGG + chr1_1:78130829-78130848 None:intergenic 25.0%
!! TAAAGAAATGTATAATGGGA+TGG - chr1_1:78130851-78130870 Msa0046100:CDS 25.0%
!!! AATATTCATATTTTTTGGGG+GGG - chr1_1:78131032-78131051 Msa0046100:intron 25.0%
! TTTCAGCTACTATGAATATA+AGG + chr1_1:78131064-78131083 None:intergenic 25.0%
! AAAAAAATAGAGAGACCAAA+AGG - chr1_1:78131216-78131235 Msa0046100:intron 25.0%
TTGTGATCGAATGTAATTAC+AGG + chr1_1:78122493-78122512 None:intergenic 30.0%
TAATTACATTCGATCACAAG+AGG - chr1_1:78122494-78122513 Msa0046100:three_prime_UTR 30.0%
GATGAGAAAGTAGAATTAGA+TGG + chr1_1:78122566-78122585 None:intergenic 30.0%
! TACTTTCTCATCGCATTTTT+AGG - chr1_1:78122574-78122593 Msa0046100:three_prime_UTR 30.0%
! ACTTTCTCATCGCATTTTTA+GGG - chr1_1:78122575-78122594 Msa0046100:three_prime_UTR 30.0%
CCTAGCAAAGAATTAAGAAA+TGG + chr1_1:78122798-78122817 None:intergenic 30.0%
CCATTTCTTAATTCTTTGCT+AGG - chr1_1:78122795-78122814 Msa0046100:three_prime_UTR 30.0%
TTCCACTGAAAATTGAAATG+TGG + chr1_1:78122985-78123004 None:intergenic 30.0%
TGAAAGAAATAAGAAAGGTG+TGG - chr1_1:78123498-78123517 Msa0046100:intron 30.0%
AAGCACAAGAAAAAACATGA+GGG + chr1_1:78123867-78123886 None:intergenic 30.0%
AAAGCACAAGAAAAAACATG+AGG + chr1_1:78123868-78123887 None:intergenic 30.0%
TTTAATTCCAGAATCACCAT+TGG + chr1_1:78123960-78123979 None:intergenic 30.0%
TCAAATAAGATCTCGTCAAA+AGG - chr1_1:78124139-78124158 Msa0046100:CDS 30.0%
TAAGCCAGCAAAAAAATTCA+TGG + chr1_1:78124414-78124433 None:intergenic 30.0%
TTAAGCTTTCTTGGATTTCT+AGG - chr1_1:78124480-78124499 Msa0046100:intron 30.0%
TAAGCTTTCTTGGATTTCTA+GGG - chr1_1:78124481-78124500 Msa0046100:intron 30.0%
ATATGAAAGCTGCAAAAGTA+GGG + chr1_1:78124613-78124632 None:intergenic 30.0%
AATATGAAAGCTGCAAAAGT+AGG + chr1_1:78124614-78124633 None:intergenic 30.0%
! GTACTAATTTGTACTAGCTA+TGG - chr1_1:78124642-78124661 Msa0046100:intron 30.0%
!! TTTTGATGGCTATTATTCAG+AGG - chr1_1:78124703-78124722 Msa0046100:intron 30.0%
!!! TCAACTTGTTTTTGAAGAGT+TGG - chr1_1:78124852-78124871 Msa0046100:CDS 30.0%
ACAAAAATGGAAAGAAACCA+TGG + chr1_1:78125058-78125077 None:intergenic 30.0%
TTAATGGAGCTATATGGTAT+TGG - chr1_1:78125288-78125307 Msa0046100:intron 30.0%
AATTAAGTCTCGTGAAGATA+TGG + chr1_1:78125366-78125385 None:intergenic 30.0%
TATAAATGAAGTTCGATTGC+AGG - chr1_1:78125520-78125539 Msa0046100:intron 30.0%
GCAATTGAAGAAAGATCAAA+AGG - chr1_1:78125578-78125597 Msa0046100:intron 30.0%
AAGATAAATGCACTAATTGG+TGG + chr1_1:78125960-78125979 None:intergenic 30.0%
TTGAACTCATTGAAAACTTG+TGG + chr1_1:78125998-78126017 None:intergenic 30.0%
TCAAGGTATAAAGTTGTTGA+GGG + chr1_1:78126034-78126053 None:intergenic 30.0%
ATCAAGGTATAAAGTTGTTG+AGG + chr1_1:78126035-78126054 None:intergenic 30.0%
TGGTATGTAATTAGTTCAAG+TGG - chr1_1:78126129-78126148 Msa0046100:intron 30.0%
GGTATGTAATTAGTTCAAGT+GGG - chr1_1:78126130-78126149 Msa0046100:intron 30.0%
AAGGAATAAAATTGAGGTGA+AGG + chr1_1:78126195-78126214 None:intergenic 30.0%
!! TTGTTTTACTGTATAGCACT+CGG - chr1_1:78126379-78126398 Msa0046100:intron 30.0%
AAGTCACCAAGTTAAAATAG+AGG - chr1_1:78126774-78126793 Msa0046100:intron 30.0%
CTATTCTCAGGTACTTAAAA+TGG - chr1_1:78127114-78127133 Msa0046100:intron 30.0%
TCAGGTACTTAAAATGGTAT+TGG - chr1_1:78127120-78127139 Msa0046100:intron 30.0%
!! TTAAAATGGTATTGGCTCTT+TGG - chr1_1:78127128-78127147 Msa0046100:intron 30.0%
GTGTGTAATTCTGTTTATGT+TGG + chr1_1:78127296-78127315 None:intergenic 30.0%
GCAGAATTTACACATAACTA+AGG - chr1_1:78127326-78127345 Msa0046100:intron 30.0%
CTAAGTCTATAGTGCAATAA+CGG + chr1_1:78127476-78127495 None:intergenic 30.0%
GTTACATCAGATAAGACTAT+AGG + chr1_1:78127549-78127568 None:intergenic 30.0%
TAACACAAATGTTGATGTAC+TGG - chr1_1:78127565-78127584 Msa0046100:intron 30.0%
AACACAAATGTTGATGTACT+GGG - chr1_1:78127566-78127585 Msa0046100:intron 30.0%
ATCATACTCTATAACCACTT+GGG - chr1_1:78127723-78127742 Msa0046100:intron 30.0%
AATTGATACTCCCATTGTAA+AGG + chr1_1:78127820-78127839 None:intergenic 30.0%
AAATGTTACATGCAAAAGTG+GGG + chr1_1:78127864-78127883 None:intergenic 30.0%
GTAAAAGGGAAGAAATTTGA+AGG + chr1_1:78127890-78127909 None:intergenic 30.0%
TTTCTCATTGTACTGCAAAT+AGG - chr1_1:78128063-78128082 Msa0046100:CDS 30.0%
TGATAAGTGATTACTAGAGA+AGG + chr1_1:78128099-78128118 None:intergenic 30.0%
CACTTATCAAGCAGTTAAAT+TGG - chr1_1:78128110-78128129 Msa0046100:CDS 30.0%
GATAATAAACCATGGTTGAT+TGG + chr1_1:78128268-78128287 None:intergenic 30.0%
CTATTCAACACTGTAATAGT+TGG + chr1_1:78128321-78128340 None:intergenic 30.0%
! CAACTATTACAGTGTTGAAT+AGG - chr1_1:78128319-78128338 Msa0046100:CDS 30.0%
!! AAACACCAATTTTGGCATAT+TGG + chr1_1:78128445-78128464 None:intergenic 30.0%
GACAGCTAATGTAACAAATT+GGG + chr1_1:78128638-78128657 None:intergenic 30.0%
AGACAGCTAATGTAACAAAT+TGG + chr1_1:78128639-78128658 None:intergenic 30.0%
TGTAAATTCTTATCATCTCC+AGG - chr1_1:78128697-78128716 Msa0046100:CDS 30.0%
ACTTTCTGATAAACAAGAAC+AGG - chr1_1:78128760-78128779 Msa0046100:intron 30.0%
TAGATACTGATGGAATAGAA+TGG + chr1_1:78129019-78129038 None:intergenic 30.0%
!! AATCAGTTTTGATCTGTAGT+TGG - chr1_1:78129104-78129123 Msa0046100:intron 30.0%
!! ATCAGTTTTGATCTGTAGTT+GGG - chr1_1:78129105-78129124 Msa0046100:intron 30.0%
TTTCACAATTATTCTGCCAT+AGG - chr1_1:78129286-78129305 Msa0046100:intron 30.0%
CTAAACCCAAAAAAATTTGG+GGG + chr1_1:78129787-78129806 None:intergenic 30.0%
GCTAAACCCAAAAAAATTTG+GGG + chr1_1:78129788-78129807 None:intergenic 30.0%
AAAAGTTGCTGGAGAAATAT+CGG - chr1_1:78129959-78129978 Msa0046100:intron 30.0%
TGAAGATCTATAAAGCAAGA+CGG + chr1_1:78130056-78130075 None:intergenic 30.0%
CTTGCTAATGTTCTTTATTG+TGG - chr1_1:78130233-78130252 Msa0046100:CDS 30.0%
ATTCAAAGTCAACACATACA+AGG + chr1_1:78130266-78130285 None:intergenic 30.0%
!! TGTATGTGTTGACTTTGAAT+AGG - chr1_1:78130266-78130285 Msa0046100:CDS 30.0%
!! GTATGTGTTGACTTTGAATA+GGG - chr1_1:78130267-78130286 Msa0046100:CDS 30.0%
!! TATGTGTTGACTTTGAATAG+GGG - chr1_1:78130268-78130287 Msa0046100:CDS 30.0%
GAGTTAAACAAATTAGTGTG+AGG - chr1_1:78131154-78131173 Msa0046100:intron 30.0%
! ACTTATGCTTAAATGCCTTT+TGG + chr1_1:78131234-78131253 None:intergenic 30.0%
! AGTTGAAGTTTCTAGATATG+TGG - chr1_1:78131308-78131327 Msa0046100:CDS 30.0%
!!! GTTTGTTTTTTTTCTTCTGG+TGG - chr1_1:78131337-78131356 Msa0046100:five_prime_UTR 30.0%
!!! TTTTTTTTCTTCTGGTGGTT+GGG - chr1_1:78131342-78131361 Msa0046100:five_prime_UTR 30.0%
!! GTCTTGTTCATTTTGTGGAT+CGG + chr1_1:78122439-78122458 None:intergenic 35.0%
GTAGAATTAGATGGATCTAG+TGG + chr1_1:78122557-78122576 None:intergenic 35.0%
AAATTGAAATGTGGCAAGGA+TGG + chr1_1:78122976-78122995 None:intergenic 35.0%
CTGAAAATTGAAATGTGGCA+AGG + chr1_1:78122980-78122999 None:intergenic 35.0%
! TGCCACATTTCAATTTTCAG+TGG - chr1_1:78122980-78122999 Msa0046100:three_prime_UTR 35.0%
!!! GGTGGAAGTCTTTTTTAGAT+AGG - chr1_1:78123173-78123192 Msa0046100:three_prime_UTR 35.0%
!!! GAAGTCTTTTTTAGATAGGC+AGG - chr1_1:78123177-78123196 Msa0046100:three_prime_UTR 35.0%
!! TTTTGACTACCATTTTCAGG+TGG + chr1_1:78123346-78123365 None:intergenic 35.0%
ACCTGAAAATGGTAGTCAAA+AGG - chr1_1:78123345-78123364 Msa0046100:three_prime_UTR 35.0%
!! TCCTTTTGACTACCATTTTC+AGG + chr1_1:78123349-78123368 None:intergenic 35.0%
TGAAAATGGTAGTCAAAAGG+AGG - chr1_1:78123348-78123367 Msa0046100:three_prime_UTR 35.0%
TCTATGAATTCTAGTCTCCT+CGG + chr1_1:78123386-78123405 None:intergenic 35.0%
GAATTCATAGAGTCCAGTTA+TGG - chr1_1:78123395-78123414 Msa0046100:CDS 35.0%
ATCTTATGGTTGACCATAAC+TGG + chr1_1:78123411-78123430 None:intergenic 35.0%
GATGGTGCAAAATCATCAAA+AGG - chr1_1:78123565-78123584 Msa0046100:intron 35.0%
!! TTTTTCTTGTGCTTTAGCTC+TGG - chr1_1:78123873-78123892 Msa0046100:intron 35.0%
! GAAGTATTATCAGGATCTAC+TGG - chr1_1:78123931-78123950 Msa0046100:intron 35.0%
TCATGCATGTACCAGAAAAA+TGG - chr1_1:78124035-78124054 Msa0046100:intron 35.0%
CATGTACCAGAAAAATGGAA+AGG - chr1_1:78124040-78124059 Msa0046100:intron 35.0%
!! ATCTGTCCTTTCCATTTTTC+TGG + chr1_1:78124049-78124068 None:intergenic 35.0%
CTGCACAAACAATCAACAAT+TGG + chr1_1:78124167-78124186 None:intergenic 35.0%
! CAATTGTTGATTGTTTGTGC+AGG - chr1_1:78124165-78124184 Msa0046100:intron 35.0%
GTTGGGATAATTCAAATTGC+AGG - chr1_1:78124388-78124407 Msa0046100:intron 35.0%
CTTAATAAGGACCTACCAAA+AGG + chr1_1:78124465-78124484 None:intergenic 35.0%
AGGTCCTTATTAAGCTTTCT+TGG - chr1_1:78124471-78124490 Msa0046100:intron 35.0%
CATATGCAGGAACCTTTAAA+AGG + chr1_1:78124561-78124580 None:intergenic 35.0%
!!! ACTAGCTATGGTTTTTTGTC+AGG - chr1_1:78124654-78124673 Msa0046100:intron 35.0%
!!! TTTTTTGTCAGGACCTTGAT+GGG - chr1_1:78124665-78124684 Msa0046100:intron 35.0%
! ATCATCTAAAATGCCCATCA+AGG + chr1_1:78124681-78124700 None:intergenic 35.0%
!!! TTGTTTTTGAAGAGTTGGTG+CGG - chr1_1:78124857-78124876 Msa0046100:CDS 35.0%
TCGGTATACAAACCCAATTT+GGG + chr1_1:78124892-78124911 None:intergenic 35.0%
ATCGGTATACAAACCCAATT+TGG + chr1_1:78124893-78124912 None:intergenic 35.0%
AGCCAATCATCTAGATTATC+TGG - chr1_1:78125006-78125025 Msa0046100:CDS 35.0%
GCCAATCATCTAGATTATCT+GGG - chr1_1:78125007-78125026 Msa0046100:CDS 35.0%
TCCCAGATAATCTAGATGAT+TGG + chr1_1:78125011-78125030 None:intergenic 35.0%
! AGGAAGCATGTTCACAAAAA+TGG + chr1_1:78125071-78125090 None:intergenic 35.0%
! TTTTTGTGAACATGCTTCCT+TGG - chr1_1:78125071-78125090 Msa0046100:intron 35.0%
! TTTTGTGAACATGCTTCCTT+GGG - chr1_1:78125072-78125091 Msa0046100:intron 35.0%
AATAAATCAGGAGGAAGCTT+AGG + chr1_1:78125181-78125200 None:intergenic 35.0%
!! CAGTTCTAAATAGCATGACT+CGG + chr1_1:78125260-78125279 None:intergenic 35.0%
! TAGAACTGCAGTTGCTTTAA+TGG - chr1_1:78125272-78125291 Msa0046100:intron 35.0%
! GTTGCTTTAATGGAGCTATA+TGG - chr1_1:78125282-78125301 Msa0046100:intron 35.0%
TTAATTGCACCATGTCTTGT+AGG - chr1_1:78125380-78125399 Msa0046100:intron 35.0%
ACTTTACTTCAGTCATTAGC+CGG - chr1_1:78125443-78125462 Msa0046100:intron 35.0%
! AAAAGGGCTTAAAGCTTTGA+GGG - chr1_1:78125595-78125614 Msa0046100:intron 35.0%
AATTTATCCCGTACAGAATC+TGG - chr1_1:78125677-78125696 Msa0046100:intron 35.0%
TTGTAGAACCAGATTCTGTA+CGG + chr1_1:78125688-78125707 None:intergenic 35.0%
!! TTTGATTAGTCTTACTGGAG+AGG - chr1_1:78125721-78125740 Msa0046100:intron 35.0%
!! TTGATTAGTCTTACTGGAGA+GGG - chr1_1:78125722-78125741 Msa0046100:intron 35.0%
TTGTTAGAACGTGAAGTTGA+AGG - chr1_1:78125819-78125838 Msa0046100:CDS 35.0%
! TTTTCAATGAGTTCAAGTGC+TGG - chr1_1:78126002-78126021 Msa0046100:intron 35.0%
GTATAAAGTTGTTGAGGGAA+AGG + chr1_1:78126029-78126048 None:intergenic 35.0%
CCTCTATGTTTATCAGAGTT+GGG - chr1_1:78126098-78126117 Msa0046100:intron 35.0%
!! ATTAGTTCAAGTGGGTTAGT+TGG - chr1_1:78126138-78126157 Msa0046100:intron 35.0%
! GGATAATTTTTGTCCTCAAC+TGG - chr1_1:78126168-78126187 Msa0046100:intron 35.0%
! CCTCTGCATTTTATCAAAGT+CGG - chr1_1:78126260-78126279 Msa0046100:intron 35.0%
!! ATGCACAATTTCTAGTGACT+TGG - chr1_1:78126316-78126335 Msa0046100:intron 35.0%
!! TGCACAATTTCTAGTGACTT+GGG - chr1_1:78126317-78126336 Msa0046100:intron 35.0%
! GTTTTCAAAGTAACAGGTTG+TGG + chr1_1:78126424-78126443 None:intergenic 35.0%
! GGTACAGTCCTTTTCAAATT+AGG + chr1_1:78126446-78126465 None:intergenic 35.0%
TTTAGGAAAGGTTAGGAACT+CGG - chr1_1:78126534-78126553 Msa0046100:intron 35.0%
TAATGTGACCCTCTTAAGTA+AGG - chr1_1:78126634-78126653 Msa0046100:intron 35.0%
AATGTGACCCTCTTAAGTAA+GGG - chr1_1:78126635-78126654 Msa0046100:intron 35.0%
AGAAAAGATCAGCTATTCTC+AGG - chr1_1:78127102-78127121 Msa0046100:intron 35.0%
AAGAAAGATATAGGAGAAGC+AGG - chr1_1:78127197-78127216 Msa0046100:intron 35.0%
AATTCCTATGCAAGAACCTA+AGG - chr1_1:78127375-78127394 Msa0046100:intron 35.0%
CGTTATTGCACTATAGACTT+AGG - chr1_1:78127474-78127493 Msa0046100:intron 35.0%
!! GTAGGAGTCTTGTTTCTTTA+AGG - chr1_1:78127673-78127692 Msa0046100:intron 35.0%
TATAGAGTATGATCATCCAC+TGG + chr1_1:78127716-78127735 None:intergenic 35.0%
GATCATACTCTATAACCACT+TGG - chr1_1:78127722-78127741 Msa0046100:intron 35.0%
TCATACTCTATAACCACTTG+GGG - chr1_1:78127724-78127743 Msa0046100:intron 35.0%
ACAACATTAACCACTGTAGT+GGG + chr1_1:78127760-78127779 None:intergenic 35.0%
TACAACATTAACCACTGTAG+TGG + chr1_1:78127761-78127780 None:intergenic 35.0%
TAATGTACCCTCCTTTACAA+TGG - chr1_1:78127806-78127825 Msa0046100:intron 35.0%
AATGTACCCTCCTTTACAAT+GGG - chr1_1:78127807-78127826 Msa0046100:intron 35.0%
AATGTTACATGCAAAAGTGG+GGG + chr1_1:78127863-78127882 None:intergenic 35.0%
TGAAACAGCATTAATGGAGA+TGG - chr1_1:78127925-78127944 Msa0046100:intron 35.0%
ATTAATGGAGATGGTTAAGC+AGG - chr1_1:78127934-78127953 Msa0046100:intron 35.0%
TTATTCTTCAAATTGGGGCA+TGG + chr1_1:78128295-78128314 None:intergenic 35.0%
ATGCACCAATATGCCAAAAT+TGG - chr1_1:78128437-78128456 Msa0046100:intron 35.0%
ACTTAAACTAATCTGCATCC+TGG + chr1_1:78128576-78128595 None:intergenic 35.0%
ATTTCTGATAGGTCTTGATG+CGG - chr1_1:78128872-78128891 Msa0046100:intron 35.0%
AATTGATATGCTTGCGTTTG+AGG + chr1_1:78129042-78129061 None:intergenic 35.0%
ACACTTGTCTTGATAAGATG+TGG - chr1_1:78129064-78129083 Msa0046100:CDS 35.0%
TGTAGTTGGGACAATTACTT+TGG - chr1_1:78129118-78129137 Msa0046100:intron 35.0%
TACAATACAACGACACTCAA+AGG + chr1_1:78129251-78129270 None:intergenic 35.0%
TACTGGAATCCCTACATTAA+GGG - chr1_1:78129312-78129331 Msa0046100:CDS 35.0%
AAGGGTCATCAACATTAATG+TGG + chr1_1:78129350-78129369 None:intergenic 35.0%
! GGAAGCATAAAGCATTAACA+GGG + chr1_1:78129501-78129520 None:intergenic 35.0%
! AGGAAGCATAAAGCATTAAC+AGG + chr1_1:78129502-78129521 None:intergenic 35.0%
TGAACACTTAAAACATACCG+TGG + chr1_1:78129736-78129755 None:intergenic 35.0%
!!! TGTGAACCCCCAAATTTTTT+TGG - chr1_1:78129778-78129797 Msa0046100:CDS 35.0%
!!! GTGAACCCCCAAATTTTTTT+GGG - chr1_1:78129779-78129798 Msa0046100:CDS 35.0%
GCTTACTAGATACTGAATGT+TGG + chr1_1:78129847-78129866 None:intergenic 35.0%
TCAACCATGTTAAGGTTTAG+GGG + chr1_1:78129893-78129912 None:intergenic 35.0%
CTCAACCATGTTAAGGTTTA+GGG + chr1_1:78129894-78129913 None:intergenic 35.0%
ACTCAACCATGTTAAGGTTT+AGG + chr1_1:78129895-78129914 None:intergenic 35.0%
AAGACAAGGTCATCTATAGA+GGG + chr1_1:78130029-78130048 None:intergenic 35.0%
AAAGACAAGGTCATCTATAG+AGG + chr1_1:78130030-78130049 None:intergenic 35.0%
!! TCTTGATTGTTTCTAGATCC+GGG + chr1_1:78130091-78130110 None:intergenic 35.0%
!! CTCTTGATTGTTTCTAGATC+CGG + chr1_1:78130092-78130111 None:intergenic 35.0%
CGTTAAAGTACAAGATGAGT+TGG - chr1_1:78130356-78130375 Msa0046100:CDS 35.0%
!!! GTTTTTTTTCTTCTGGTGGT+TGG - chr1_1:78131341-78131360 Msa0046100:five_prime_UTR 35.0%
!!! TTTTTTTCTTCTGGTGGTTG+GGG - chr1_1:78131343-78131362 Msa0046100:five_prime_UTR 35.0%
GACAACGCATAATATATGCA+AGG + chr1_1:78131382-78131401 None:intergenic 35.0%
TGAGCTTAGCTCAATTGTTA+GGG + chr1_1:78131404-78131423 None:intergenic 35.0%
AAATAACGAGAGCTACAATG+TGG + chr1_1:78131466-78131485 None:intergenic 35.0%
!!! TGCGAGTCTTGTTCATTTTG+TGG + chr1_1:78122444-78122463 None:intergenic 40.0%
TGTAAATGCTAGCGTACTCA+CGG + chr1_1:78122930-78122949 None:intergenic 40.0%
TGAGTACGCTAGCATTTACA+AGG - chr1_1:78122930-78122949 Msa0046100:three_prime_UTR 40.0%
CACAAAAGAAGTGGGAAATC+AGG + chr1_1:78123107-78123126 None:intergenic 40.0%
!! TACTTTTCAGGAGGAAGAAG+AGG - chr1_1:78123138-78123157 Msa0046100:three_prime_UTR 40.0%
TAAAAAAGACTTCCACCGCT+CGG + chr1_1:78123170-78123189 None:intergenic 40.0%
CAATACAGAAGACTCTGTCT+CGG + chr1_1:78123203-78123222 None:intergenic 40.0%
GACACAAACAGAATACCTGT+GGG - chr1_1:78123223-78123242 Msa0046100:three_prime_UTR 40.0%
ACACAAACAGAATACCTGTG+GGG - chr1_1:78123224-78123243 Msa0046100:three_prime_UTR 40.0%
TAGTCAAAAGGAGGAGTTAC+CGG - chr1_1:78123357-78123376 Msa0046100:three_prime_UTR 40.0%
! ATCATCAAAAGGAGCATGTG+AGG - chr1_1:78123576-78123595 Msa0046100:intron 40.0%
AGGAGTTCTATGATGTTGAG+AGG - chr1_1:78123611-78123630 Msa0046100:CDS 40.0%
!! CAAGAGGAGTATCTAGACTA+GGG + chr1_1:78123642-78123661 None:intergenic 40.0%
!! ACAAGAGGAGTATCTAGACT+AGG + chr1_1:78123643-78123662 None:intergenic 40.0%
CTAGATACTCCTCTTGTTGA+TGG - chr1_1:78123646-78123665 Msa0046100:CDS 40.0%
! AGCAGCAATACCATTTGTTG+AGG + chr1_1:78123680-78123699 None:intergenic 40.0%
ACTTCCAACTCTTCTTTCCA+AGG + chr1_1:78123730-78123749 None:intergenic 40.0%
AGTTGGAAGTTCTTGTTCGT+GGG - chr1_1:78123740-78123759 Msa0046100:intron 40.0%
AATTCCAGAATCACCATTGG+AGG + chr1_1:78123957-78123976 None:intergenic 40.0%
GGCAGTTAGATGACAATGAT+GGG - chr1_1:78123996-78124015 Msa0046100:intron 40.0%
ATGGAAAGGACAGATTGAGA+AGG - chr1_1:78124054-78124073 Msa0046100:CDS 40.0%
!!! CAGGCCATGAATTTTTTTGC+TGG - chr1_1:78124407-78124426 Msa0046100:intron 40.0%
!!! ATTGTTGCTTTTGATGCCTG+AGG - chr1_1:78124433-78124452 Msa0046100:intron 40.0%
!!! TACCAAAAGGCATTTTCCTC+AGG + chr1_1:78124452-78124471 None:intergenic 40.0%
! TGAGGAAAATGCCTTTTGGT+AGG - chr1_1:78124451-78124470 Msa0046100:intron 40.0%
!!! GTTTTTTGTCAGGACCTTGA+TGG - chr1_1:78124664-78124683 Msa0046100:intron 40.0%
AGAGGATATGATAGAGTCTC+AGG - chr1_1:78124721-78124740 Msa0046100:intron 40.0%
!!! TGTTTTTGAAGAGTTGGTGC+GGG - chr1_1:78124858-78124877 Msa0046100:CDS 40.0%
TTCATGTCTTTGAACTCACC+AGG - chr1_1:78124923-78124942 Msa0046100:intron 40.0%
CACTAAAAACAAACTTCGCC+TGG + chr1_1:78124944-78124963 None:intergenic 40.0%
GAATACAAGCGCTCATTTGA+AGG + chr1_1:78125153-78125172 None:intergenic 40.0%
! TGGGATGTGCTTCTTTTTGA+AGG - chr1_1:78125231-78125250 Msa0046100:intron 40.0%
!! AGCATCCTTTGTTGTTACCA+AGG + chr1_1:78125411-78125430 None:intergenic 40.0%
! TTGGTAACAACAAAGGATGC+TGG - chr1_1:78125410-78125429 Msa0046100:intron 40.0%
AAGCTGACTGCTATCAAATG+TGG + chr1_1:78125471-78125490 None:intergenic 40.0%
!!! CTTGTTTTGACAGCTTGCAT+GGG - chr1_1:78125488-78125507 Msa0046100:intron 40.0%
AGGAGCTGAGGAATAAACAT+AGG - chr1_1:78125540-78125559 Msa0046100:intron 40.0%
TCAATTGCAGCTATTACAGC+TGG + chr1_1:78125566-78125585 None:intergenic 40.0%
CAAAAGGGCTTAAAGCTTTG+AGG - chr1_1:78125594-78125613 Msa0046100:intron 40.0%
!! TAAAGCTTTGAGGGATGCTA+AGG - chr1_1:78125604-78125623 Msa0046100:intron 40.0%
!! AAAGCTTTGAGGGATGCTAA+GGG - chr1_1:78125605-78125624 Msa0046100:intron 40.0%
TGTAGAACCAGATTCTGTAC+GGG + chr1_1:78125687-78125706 None:intergenic 40.0%
TTCACGTTCTAACAACAGGA+GGG + chr1_1:78125814-78125833 None:intergenic 40.0%
CAACTTCACGTTCTAACAAC+AGG + chr1_1:78125818-78125837 None:intergenic 40.0%
GCCTCTATGTTTATCAGAGT+TGG - chr1_1:78126097-78126116 Msa0046100:intron 40.0%
CCCAACTCTGATAAACATAG+AGG + chr1_1:78126101-78126120 None:intergenic 40.0%
CCGACTTTGATAAAATGCAG+AGG + chr1_1:78126263-78126282 None:intergenic 40.0%
! ATCAAAGTCGGACAGTGTTT+TGG - chr1_1:78126272-78126291 Msa0046100:intron 40.0%
CATCTTACATCAATGTCGCA+TGG + chr1_1:78126353-78126372 None:intergenic 40.0%
GCGACATTGATGTAAGATGT+TGG - chr1_1:78126354-78126373 Msa0046100:intron 40.0%
AAGGACTGTACCAGAAAACT+AGG - chr1_1:78126454-78126473 Msa0046100:intron 40.0%
!! TTCGCATTGTCCTAGTTTTC+TGG + chr1_1:78126467-78126486 None:intergenic 40.0%
GAAACCACCCTTACTTAAGA+GGG + chr1_1:78126645-78126664 None:intergenic 40.0%
TGAAACCACCCTTACTTAAG+AGG + chr1_1:78126646-78126665 None:intergenic 40.0%
ATAAGATCAATACCACGTCG+TGG + chr1_1:78127024-78127043 None:intergenic 40.0%
CTCACTTTATGCAGATTGCA+TGG - chr1_1:78127048-78127067 Msa0046100:intron 40.0%
ATATAGGAGAAGCAGGAATG+TGG - chr1_1:78127204-78127223 Msa0046100:intron 40.0%
AGCAGGAATGTGGTAGAAAT+TGG - chr1_1:78127214-78127233 Msa0046100:intron 40.0%
TTGCACTATAGACTTAGGCT+TGG - chr1_1:78127479-78127498 Msa0046100:intron 40.0%
TTGTCCACTCAACTTTAGTC+TGG + chr1_1:78127516-78127535 None:intergenic 40.0%
AAACAAGACTCCTACACCAA+TGG + chr1_1:78127668-78127687 None:intergenic 40.0%
GTTTGTATCTGAAAGTCCAG+TGG - chr1_1:78127697-78127716 Msa0046100:intron 40.0%
CATACTCTATAACCACTTGG+GGG - chr1_1:78127725-78127744 Msa0046100:intron 40.0%
!! ATTAACCACTGTAGTGGGTA+GGG + chr1_1:78127755-78127774 None:intergenic 40.0%
GATACTCCCATTGTAAAGGA+GGG + chr1_1:78127816-78127835 None:intergenic 40.0%
TGATACTCCCATTGTAAAGG+AGG + chr1_1:78127817-78127836 None:intergenic 40.0%
GGAGCTTGAAACAGCATTAA+TGG - chr1_1:78127919-78127938 Msa0046100:intron 40.0%
CTCATTGTACTGCAAATAGG+AGG - chr1_1:78128066-78128085 Msa0046100:CDS 40.0%
GTGGGAAAGAAGCAAAGTAA+AGG + chr1_1:78128167-78128186 None:intergenic 40.0%
CATAAACTGCCAATCAACCA+TGG - chr1_1:78128256-78128275 Msa0046100:CDS 40.0%
CGATTTGTCAGAATCTCACT+AGG - chr1_1:78128360-78128379 Msa0046100:intron 40.0%
ATCATATTTGCCACAAGCAC+AGG + chr1_1:78128400-78128419 None:intergenic 40.0%
!! TAGTAACTGTGCTTTGAAGG+TGG + chr1_1:78128552-78128571 None:intergenic 40.0%
GGATAGTAACTGTGCTTTGA+AGG + chr1_1:78128555-78128574 None:intergenic 40.0%
TCAAAGCACAGTTACTATCC+AGG - chr1_1:78128555-78128574 Msa0046100:intron 40.0%
TTTCTGATAGGTCTTGATGC+GGG - chr1_1:78128873-78128892 Msa0046100:intron 40.0%
GCAAGAACAAAAGGTTACAG+AGG - chr1_1:78128900-78128919 Msa0046100:CDS 40.0%
AAAAGGTTACAGAGGATGCT+CGG - chr1_1:78128908-78128927 Msa0046100:CDS 40.0%
! AAAGGTAACCTGAAGCACTT+GGG + chr1_1:78128974-78128993 None:intergenic 40.0%
! AAAAGGTAACCTGAAGCACT+TGG + chr1_1:78128975-78128994 None:intergenic 40.0%
TGATAAGATGTGGTGCTTTC+AGG - chr1_1:78129074-78129093 Msa0046100:CDS 40.0%
ACGACACTCAAAGGAAAGAA+TGG + chr1_1:78129242-78129261 None:intergenic 40.0%
! TGAGTGTCGTTGTATTGTAG+TGG - chr1_1:78129252-78129271 Msa0046100:intron 40.0%
TATTCTGCCATAGGTTGTAC+TGG - chr1_1:78129295-78129314 Msa0046100:intron 40.0%
GTACTGGAATCCCTACATTA+AGG - chr1_1:78129311-78129330 Msa0046100:CDS 40.0%
AACTGTTGCACTTGCAGAAA+TGG - chr1_1:78129630-78129649 Msa0046100:intron 40.0%
AATGGAGAAGAGAGCAGTTA+TGG - chr1_1:78129648-78129667 Msa0046100:intron 40.0%
GAGATGGTTGCAGTTTAGTT+TGG + chr1_1:78129714-78129733 None:intergenic 40.0%
CTTAAAACATACCGTGGAGA+TGG + chr1_1:78129730-78129749 None:intergenic 40.0%
CTAGTAAGCACCACAAATAG+TGG - chr1_1:78129858-78129877 Msa0046100:CDS 40.0%
GACGGTTTAACCACTATTTG+TGG + chr1_1:78129871-78129890 None:intergenic 40.0%
TTGCTGGAGAAATATCGGAA+AGG - chr1_1:78129964-78129983 Msa0046100:intron 40.0%
AAACAATCAAGAGCCTACGA+TGG - chr1_1:78130099-78130118 Msa0046100:CDS 40.0%
AGAAAGCAAACTTATCCTCC+TGG + chr1_1:78130134-78130153 None:intergenic 40.0%
! AGTTTGCTTTCTCGACCATT+TGG - chr1_1:78130142-78130161 Msa0046100:CDS 40.0%
ATAGGGGAAACCTACTAATG+TGG - chr1_1:78130284-78130303 Msa0046100:CDS 40.0%
!! TTCCCTCATGTTGACTTACA+GGG + chr1_1:78130332-78130351 None:intergenic 40.0%
!! TTTCCCTCATGTTGACTTAC+AGG + chr1_1:78130333-78130352 None:intergenic 40.0%
GTAAGTCAACATGAGGGAAA+TGG - chr1_1:78130333-78130352 Msa0046100:CDS 40.0%
AAATTAGTGTGAGGACTCGA+GGG - chr1_1:78131163-78131182 Msa0046100:intron 40.0%
GTGAGCTTAGCTCAATTGTT+AGG + chr1_1:78131405-78131424 None:intergenic 40.0%
TTGAGCTAAGCTCACAATGA+CGG - chr1_1:78131410-78131429 Msa0046100:five_prime_UTR 40.0%
GAGCGTTAGTAAGCAGATAC+TGG + chr1_1:78122359-78122378 None:intergenic 45.0%
TGTGTGTGTGTGTGTCAACA+GGG - chr1_1:78122861-78122880 Msa0046100:three_prime_UTR 45.0%
AGGTCGCACAGTAAATCCAT+AGG + chr1_1:78122890-78122909 None:intergenic 45.0%
GAAATGTGGCAAGGATGGAA+TGG + chr1_1:78122971-78122990 None:intergenic 45.0%
TTCAGGAGGAAGAAGAGGAA+AGG - chr1_1:78123143-78123162 Msa0046100:three_prime_UTR 45.0%
CGAGACAGAGTCTTCTGTAT+TGG - chr1_1:78123201-78123220 Msa0046100:three_prime_UTR 45.0%
GGACACAAACAGAATACCTG+TGG - chr1_1:78123222-78123241 Msa0046100:three_prime_UTR 45.0%
CACAAACAGAATACCTGTGG+GGG - chr1_1:78123225-78123244 Msa0046100:three_prime_UTR 45.0%
GGGGAAGAGAACAAAGTTTC+TGG - chr1_1:78123244-78123263 Msa0046100:three_prime_UTR 45.0%
!! GTTTCTGGTGCTGAATCTGT+AGG - chr1_1:78123259-78123278 Msa0046100:three_prime_UTR 45.0%
GCTGATACTCCACCTGAAAA+TGG - chr1_1:78123334-78123353 Msa0046100:three_prime_UTR 45.0%
AGGTGTGGTAAAAGATGAGC+TGG - chr1_1:78123513-78123532 Msa0046100:intron 45.0%
GAGTCACTATCTCTTGCTGA+TGG - chr1_1:78123547-78123566 Msa0046100:intron 45.0%
ATGTGAGGAAGATTCTGACG+AGG - chr1_1:78123591-78123610 Msa0046100:CDS 45.0%
GTACTCAAGCCATCAACAAG+AGG + chr1_1:78123658-78123677 None:intergenic 45.0%
GGCTTGAGTACCTCAACAAA+TGG - chr1_1:78123667-78123686 Msa0046100:CDS 45.0%
GTGTCCTTGGAAAGAAGAGT+TGG - chr1_1:78123723-78123742 Msa0046100:intron 45.0%
GAGTTGGAAGTTCTTGTTCG+TGG - chr1_1:78123739-78123758 Msa0046100:intron 45.0%
GTTGGAAGTTCTTGTTCGTG+GGG - chr1_1:78123741-78123760 Msa0046100:intron 45.0%
TTGGAAGTTCTTGTTCGTGG+GGG - chr1_1:78123742-78123761 Msa0046100:intron 45.0%
!!! TTAGCTCTGGCAAGCTTTTG+TGG - chr1_1:78123886-78123905 Msa0046100:intron 45.0%
!!! TAGCTCTGGCAAGCTTTTGT+GGG - chr1_1:78123887-78123906 Msa0046100:intron 45.0%
! CTTTTGTGGGTGTCAAAGCA+AGG - chr1_1:78123900-78123919 Msa0046100:intron 45.0%
!! GCGGGTAGAGAAGTATTATC+AGG - chr1_1:78123922-78123941 Msa0046100:intron 45.0%
GGGCAGTTAGATGACAATGA+TGG - chr1_1:78123995-78124014 Msa0046100:intron 45.0%
TCATAGCATCATGAGCTACG+AGG + chr1_1:78124100-78124119 None:intergenic 45.0%
ACCTGACAGTAACCAACAGA+GGG + chr1_1:78124283-78124302 None:intergenic 45.0%
! TGCCTGAGGAAAATGCCTTT+TGG - chr1_1:78124447-78124466 Msa0046100:intron 45.0%
CCATTCCTTCATGACAGCAA+CGG + chr1_1:78124588-78124607 None:intergenic 45.0%
! TCTAGATTATCTGGGAGTGC+AGG - chr1_1:78125015-78125034 Msa0046100:CDS 45.0%
AACATGCTTCCTTGGGAAAG+TGG - chr1_1:78125079-78125098 Msa0046100:intron 45.0%
AAAACCTGACCACTTTCCCA+AGG + chr1_1:78125091-78125110 None:intergenic 45.0%
TACTTCAGTGCTTCGAGTGT+GGG - chr1_1:78125212-78125231 Msa0046100:intron 45.0%
! TCCAGCCTTGGTAACAACAA+AGG - chr1_1:78125403-78125422 Msa0046100:intron 45.0%
!! TCCTTTGTTGTTACCAAGGC+TGG + chr1_1:78125407-78125426 None:intergenic 45.0%
ACTGCTATCAAATGTGGAGC+CGG + chr1_1:78125465-78125484 None:intergenic 45.0%
!!! GCTTGTTTTGACAGCTTGCA+TGG - chr1_1:78125487-78125506 Msa0046100:intron 45.0%
TCGAATAATGCGCAAGTGCT+TGG - chr1_1:78125653-78125672 Msa0046100:intron 45.0%
CGAATAATGCGCAAGTGCTT+GGG - chr1_1:78125654-78125673 Msa0046100:intron 45.0%
!! TTAACCTGCTCTGGAAGATC+TGG + chr1_1:78125764-78125783 None:intergenic 45.0%
AAGACGGAATTAACCTGCTC+TGG + chr1_1:78125773-78125792 None:intergenic 45.0%
TCACGTTCTAACAACAGGAG+GGG + chr1_1:78125813-78125832 None:intergenic 45.0%
CTTCACGTTCTAACAACAGG+AGG + chr1_1:78125815-78125834 None:intergenic 45.0%
! ATCAGAGTTGGGCAGTGTTT+TGG - chr1_1:78126109-78126128 Msa0046100:intron 45.0%
GTGTCCTTAGGTTCTTGCAT+AGG + chr1_1:78127382-78127401 None:intergenic 45.0%
GACTCCAGACTAAAGTTGAG+TGG - chr1_1:78127509-78127528 Msa0046100:intron 45.0%
AATGTTGATGTACTGGGCAG+TGG - chr1_1:78127572-78127591 Msa0046100:intron 45.0%
ACATTTGAAGAGCTTGGGCA+TGG - chr1_1:78127642-78127661 Msa0046100:intron 45.0%
!! CATTAACCACTGTAGTGGGT+AGG + chr1_1:78127756-78127775 None:intergenic 45.0%
AGATGGTTAAGCAGGACAAC+AGG - chr1_1:78127942-78127961 Msa0046100:intron 45.0%
GCACGAAGCAAAATCCATTC+TGG + chr1_1:78127999-78128018 None:intergenic 45.0%
TTGCCTCCTCAGATAGATTG+TGG - chr1_1:78128137-78128156 Msa0046100:CDS 45.0%
AGATGAAGTCTTCCCACAAC+AGG + chr1_1:78128230-78128249 None:intergenic 45.0%
TATTGCTAGACCTGTGCTTG+TGG - chr1_1:78128387-78128406 Msa0046100:intron 45.0%
ACAGGAAACTGCAATGCTTC+AGG - chr1_1:78128778-78128797 Msa0046100:intron 45.0%
ATATGCTTCCCAAGTGCTTC+AGG - chr1_1:78128963-78128982 Msa0046100:intron 45.0%
! GCGTTTGAGGTAGATACTGA+TGG + chr1_1:78129029-78129048 None:intergenic 45.0%
GTCGTTGTATTGTAGTGGTG+TGG - chr1_1:78129257-78129276 Msa0046100:intron 45.0%
AGGGATTCCAGTACAACCTA+TGG + chr1_1:78129305-78129324 None:intergenic 45.0%
TGCAACTCGTGTGATGATAG+AGG + chr1_1:78129410-78129429 None:intergenic 45.0%
AGTTATGGCTGAGTCTATGC+TGG - chr1_1:78129663-78129682 Msa0046100:intron 45.0%
! GCTACTTTGCAGTATCAGTC+TGG - chr1_1:78129688-78129707 Msa0046100:intron 45.0%
CTAAACTGCAACCATCTCCA+CGG - chr1_1:78129716-78129735 Msa0046100:CDS 45.0%
TTGGGGGTTCACATGCATTT+AGG + chr1_1:78129771-78129790 None:intergenic 45.0%
CCATGTTAAGGTTTAGGGGA+CGG + chr1_1:78129889-78129908 None:intergenic 45.0%
TGGGGAACTCAACCATGTTA+AGG + chr1_1:78129901-78129920 None:intergenic 45.0%
AGCAAGACGGCAAAAAGACA+AGG + chr1_1:78130043-78130062 None:intergenic 45.0%
TTTCTAGATCCGGGAGATTC+TGG + chr1_1:78130082-78130101 None:intergenic 45.0%
CAAACTTATCCTCCTGGTAG+GGG + chr1_1:78130128-78130147 None:intergenic 45.0%
GCAAACTTATCCTCCTGGTA+GGG + chr1_1:78130129-78130148 None:intergenic 45.0%
AGCAAACTTATCCTCCTGGT+AGG + chr1_1:78130130-78130149 None:intergenic 45.0%
CTTTCTCGACCATTTGGACT+TGG - chr1_1:78130148-78130167 Msa0046100:CDS 45.0%
TCGACCATTTGGACTTGGAT+GGG - chr1_1:78130153-78130172 Msa0046100:CDS 45.0%
! GCTGGTTCTTCCACATTAGT+AGG + chr1_1:78130297-78130316 None:intergenic 45.0%
AAGCCCTGTAAGTCAACATG+AGG - chr1_1:78130326-78130345 Msa0046100:CDS 45.0%
AGCCCTGTAAGTCAACATGA+GGG - chr1_1:78130327-78130346 Msa0046100:CDS 45.0%
CAAATTAGTGTGAGGACTCG+AGG - chr1_1:78131162-78131181 Msa0046100:intron 45.0%
CATGCTAAGAGCAACTCCAA+CGG - chr1_1:78131271-78131290 Msa0046100:CDS 45.0%
ATGCTAAGAGCAACTCCAAC+GGG - chr1_1:78131272-78131291 Msa0046100:CDS 45.0%
!! AAGAAATTAATAATTAATTA+TGG + chr1_1:78124969-78124988 None:intergenic 5.0%
ACTGACTGTGTGAGCGAGAA+TGG + chr1_1:78122291-78122310 None:intergenic 50.0%
GCACATGCACACTCATCAAG+CGG + chr1_1:78122320-78122339 None:intergenic 50.0%
GTGTGTGTGTGTGTGTCAAC+AGG - chr1_1:78122860-78122879 Msa0046100:three_prime_UTR 50.0%
TGTGTCAACAGGGATGCCTA+TGG - chr1_1:78122871-78122890 Msa0046100:three_prime_UTR 50.0%
! CGGTATCTTTGCAGGTGTTG+AGG + chr1_1:78122910-78122929 None:intergenic 50.0%
CGTACTCACGGTATCTTTGC+AGG + chr1_1:78122918-78122937 None:intergenic 50.0%
GTGGCAAGGATGGAATGGAA+TGG + chr1_1:78122966-78122985 None:intergenic 50.0%
AAGAAGAGGAAAGGTCCGAG+CGG - chr1_1:78123152-78123171 Msa0046100:three_prime_UTR 50.0%
ACTTTGTTCTCTTCCCCCAC+AGG + chr1_1:78123241-78123260 None:intergenic 50.0%
ACCTGATGCTAGCTCAGAGA+AGG - chr1_1:78123288-78123307 Msa0046100:three_prime_UTR 50.0%
CCTGATGCTAGCTCAGAGAA+GGG - chr1_1:78123289-78123308 Msa0046100:three_prime_UTR 50.0%
!! AGCTCAGAGAAGGGTGTTGA+TGG - chr1_1:78123298-78123317 Msa0046100:three_prime_UTR 50.0%
!! GCTCAGAGAAGGGTGTTGAT+GGG - chr1_1:78123299-78123318 Msa0046100:three_prime_UTR 50.0%
ATTCTAGTCTCCTCGGATGC+CGG + chr1_1:78123379-78123398 None:intergenic 50.0%
TTGTGGGTGTCAAAGCAAGG+CGG - chr1_1:78123903-78123922 Msa0046100:intron 50.0%
! GAGGTGAAGTGTCACAGGTA+CGG + chr1_1:78124081-78124100 None:intergenic 50.0%
ATTTCCTGGTCACCCTGCTT+TGG - chr1_1:78124201-78124220 Msa0046100:intron 50.0%
TACCATCCTCGTCCAAAGCA+GGG + chr1_1:78124216-78124235 None:intergenic 50.0%
GCTCGACATAATCCCTCTGT+TGG - chr1_1:78124268-78124287 Msa0046100:intron 50.0%
! TCCCTCTGTTGGTTACTGTC+AGG - chr1_1:78124279-78124298 Msa0046100:intron 50.0%
GACCTGACAGTAACCAACAG+AGG + chr1_1:78124284-78124303 None:intergenic 50.0%
CCGTTGCTGTCATGAAGGAA+TGG - chr1_1:78124585-78124604 Msa0046100:intron 50.0%
CGGGAGAGGTTTCCCAAATT+GGG - chr1_1:78124877-78124896 Msa0046100:CDS 50.0%
GTACTTCAGTGCTTCGAGTG+TGG - chr1_1:78125211-78125230 Msa0046100:intron 50.0%
AAGGCTGGACCTACAAGACA+TGG + chr1_1:78125392-78125411 None:intergenic 50.0%
ATGTCTTGTAGGTCCAGCCT+TGG - chr1_1:78125391-78125410 Msa0046100:intron 50.0%
AAGTTCGATTGCAGGAGCTG+AGG - chr1_1:78125528-78125547 Msa0046100:intron 50.0%
TTTGAGGGATGCTAAGGGTC+TGG - chr1_1:78125610-78125629 Msa0046100:intron 50.0%
GGCGGGGATAAAAGGAAAGA+CGG + chr1_1:78125789-78125808 None:intergenic 50.0%
ACGTTCTAACAACAGGAGGG+GGG + chr1_1:78125811-78125830 None:intergenic 50.0%
CACGTTCTAACAACAGGAGG+GGG + chr1_1:78125812-78125831 None:intergenic 50.0%
!! AGTGGGTTAGTTGGCTGTTG+AGG - chr1_1:78126147-78126166 Msa0046100:intron 50.0%
TTGAGGTGAAGGACCAGTTG+AGG + chr1_1:78126184-78126203 None:intergenic 50.0%
GTGACCCTCTTAAGTAAGGG+TGG - chr1_1:78126638-78126657 Msa0046100:intron 50.0%
GAAAGCAACTAACCACGACG+TGG - chr1_1:78127009-78127028 Msa0046100:intron 50.0%
TCTCACTTGGCCTGGAAACA+GGG - chr1_1:78127413-78127432 Msa0046100:intron 50.0%
TAGACTTAGGCTTGGCAGTC+TGG - chr1_1:78127487-78127506 Msa0046100:intron 50.0%
GATTACCCTACCCACTACAG+TGG - chr1_1:78127747-78127766 Msa0046100:intron 50.0%
! CTTCCCTTTTACCAGAGCAG+AGG - chr1_1:78127898-78127917 Msa0046100:intron 50.0%
GCTCCTCTGCTCTGGTAAAA+GGG + chr1_1:78127904-78127923 None:intergenic 50.0%
AGCTCCTCTGCTCTGGTAAA+AGG + chr1_1:78127905-78127924 None:intergenic 50.0%
TGTTTCAAGCTCCTCTGCTC+TGG + chr1_1:78127912-78127931 None:intergenic 50.0%
TGGTTAAGCAGGACAACAGG+CGG - chr1_1:78127945-78127964 Msa0046100:intron 50.0%
!! TCTGGACTAGTGCCTTACCT+TGG + chr1_1:78127981-78128000 None:intergenic 50.0%
! GGTAAGGCACTAGTCCAGAA+TGG - chr1_1:78127982-78128001 Msa0046100:intron 50.0%
TGAGAAAGCAGCAGATGCAG+AGG + chr1_1:78128050-78128069 None:intergenic 50.0%
TCGCCACAATCTATCTGAGG+AGG + chr1_1:78128143-78128162 None:intergenic 50.0%
GGTTCGCCACAATCTATCTG+AGG + chr1_1:78128146-78128165 None:intergenic 50.0%
TCTCAACCGATAGCCTGTTG+TGG - chr1_1:78128214-78128233 Msa0046100:CDS 50.0%
CTCAACCGATAGCCTGTTGT+GGG - chr1_1:78128215-78128234 Msa0046100:CDS 50.0%
GTCTTCCCACAACAGGCTAT+CGG + chr1_1:78128223-78128242 None:intergenic 50.0%
CTTCTTCTAGTCGCTCTACC+TGG + chr1_1:78128718-78128737 None:intergenic 50.0%
GGTAGAGCGACTAGAAGAAG+AGG - chr1_1:78128718-78128737 Msa0046100:CDS 50.0%
GCGGGTAGAGCAAGAACAAA+AGG - chr1_1:78128891-78128910 Msa0046100:CDS 50.0%
CCGTCCCCTAAACCTTAACA+TGG - chr1_1:78129886-78129905 Msa0046100:intron 50.0%
TCTTCACAGCCAGAATCTCC+CGG - chr1_1:78130070-78130089 Msa0046100:CDS 50.0%
CTCGACCATTTGGACTTGGA+TGG - chr1_1:78130152-78130171 Msa0046100:CDS 50.0%
CGACCATTTGGACTTGGATG+GGG - chr1_1:78130154-78130173 Msa0046100:CDS 50.0%
TCACCCCATCCAAGTCCAAA+TGG + chr1_1:78130160-78130179 None:intergenic 50.0%
TGGATGGGGTGATCGAAACA+AGG - chr1_1:78130168-78130187 Msa0046100:CDS 50.0%
ACAGGGCTTTCTACTACAGC+TGG + chr1_1:78130315-78130334 None:intergenic 50.0%
TCTTGCTCCTCAAACCGTCT+GGG + chr1_1:78130417-78130436 None:intergenic 50.0%
TTCTTGCTCCTCAAACCGTC+TGG + chr1_1:78130418-78130437 None:intergenic 50.0%
CTTCAAGCTAACAGACCCGT+TGG + chr1_1:78131290-78131309 None:intergenic 50.0%
GCACACTCATCAAGCGGTGT+GGG + chr1_1:78122314-78122333 None:intergenic 55.0%
TGCACACTCATCAAGCGGTG+TGG + chr1_1:78122315-78122334 None:intergenic 55.0%
CCCTTCTCTGAGCTAGCATC+AGG + chr1_1:78123292-78123311 None:intergenic 55.0%
CAAGGACACGAAGCCTCTAG+TGG + chr1_1:78123712-78123731 None:intergenic 55.0%
CACTAGAGGCTTCGTGTCCT+TGG - chr1_1:78123710-78123729 Msa0046100:intron 55.0%
TGTTCGTGGGGGAGTTCCAA+TGG - chr1_1:78123753-78123772 Msa0046100:intron 55.0%
! GGGAGTTCCAATGGCACTGA+GGG - chr1_1:78123762-78123781 Msa0046100:intron 55.0%
! GGAGTTCCAATGGCACTGAG+GGG - chr1_1:78123763-78123782 Msa0046100:intron 55.0%
TGTGGGTGTCAAAGCAAGGC+GGG - chr1_1:78123904-78123923 Msa0046100:intron 55.0%
! CAGGATCTACTGGCCTCCAA+TGG - chr1_1:78123941-78123960 Msa0046100:intron 55.0%
CTGGCCTCCAATGGTGATTC+TGG - chr1_1:78123950-78123969 Msa0046100:intron 55.0%
! GCTACGAGGTGAAGTGTCAC+AGG + chr1_1:78124086-78124105 None:intergenic 55.0%
TGTTTGTGCAGGATCTGCCG+CGG - chr1_1:78124176-78124195 Msa0046100:intron 55.0%
CTACCATCCTCGTCCAAAGC+AGG + chr1_1:78124217-78124236 None:intergenic 55.0%
CAGCAACGGTCGTCATATGC+AGG + chr1_1:78124574-78124593 None:intergenic 55.0%
GACGACCGTTGCTGTCATGA+AGG - chr1_1:78124580-78124599 Msa0046100:intron 55.0%
!! TTGAAGAGTTGGTGCGGGAG+AGG - chr1_1:78124863-78124882 Msa0046100:CDS 55.0%
GCGGGAGAGGTTTCCCAAAT+TGG - chr1_1:78124876-78124895 Msa0046100:CDS 55.0%
! ATCTGGGAGTGCAGGTTGCA+TGG - chr1_1:78125023-78125042 Msa0046100:CDS 55.0%
! TCTGGGAGTGCAGGTTGCAT+GGG - chr1_1:78125024-78125043 Msa0046100:CDS 55.0%
TTGCATGGGTGACTGGACCA+TGG - chr1_1:78125038-78125057 Msa0046100:CDS 55.0%
GCTTCCTTGGGAAAGTGGTC+AGG - chr1_1:78125084-78125103 Msa0046100:intron 55.0%
AGCTCCAGATCTTCCAGAGC+AGG - chr1_1:78125757-78125776 Msa0046100:intron 55.0%
CGTTCTAACAACAGGAGGGG+GGG + chr1_1:78125810-78125829 None:intergenic 55.0%
ACCTAAGGACACTCGAACCG+TGG - chr1_1:78127390-78127409 Msa0046100:intron 55.0%
ACCACGGTTCGAGTGTCCTT+AGG + chr1_1:78127394-78127413 None:intergenic 55.0%
ACTCGAACCGTGGTCTCACT+TGG - chr1_1:78127400-78127419 Msa0046100:intron 55.0%
TTCCAGGCCAAGTGAGACCA+CGG + chr1_1:78127410-78127429 None:intergenic 55.0%
GTCTCACTTGGCCTGGAAAC+AGG - chr1_1:78127412-78127431 Msa0046100:intron 55.0%
CTCACTTGGCCTGGAAACAG+GGG - chr1_1:78127414-78127433 Msa0046100:intron 55.0%
AAGAGCTTGGGCATGGCCAT+TGG - chr1_1:78127649-78127668 Msa0046100:intron 55.0%
TTGGGCATGGCCATTGGTGT+AGG - chr1_1:78127655-78127674 Msa0046100:intron 55.0%
GGTTAAGCAGGACAACAGGC+GGG - chr1_1:78127946-78127965 Msa0046100:intron 55.0%
!! CTGGTAGGGGTATCCATCGT+AGG + chr1_1:78130115-78130134 None:intergenic 55.0%
CTACGATGGATACCCCTACC+AGG - chr1_1:78130113-78130132 Msa0046100:CDS 55.0%
TCACTTTGCCCTTCCCCAGA+CGG - chr1_1:78130400-78130419 Msa0046100:CDS 55.0%
TCCTCAAACCGTCTGGGGAA+GGG + chr1_1:78130411-78130430 None:intergenic 55.0%
CTTGCTCCTCAAACCGTCTG+GGG + chr1_1:78130416-78130435 None:intergenic 55.0%
GGTGGTTGGGGTTTGAACTC+TGG - chr1_1:78131355-78131374 Msa0046100:five_prime_UTR 55.0%
AAGAGGAAAGGTCCGAGCGG+TGG - chr1_1:78123155-78123174 Msa0046100:three_prime_UTR 60.0%
TGCTGCTGCTGCACCACTAG+AGG - chr1_1:78123696-78123715 Msa0046100:intron 60.0%
GGGGAGTTCCAATGGCACTG+AGG - chr1_1:78123761-78123780 Msa0046100:intron 60.0%
! TCCAATGGCACTGAGGGGAG+AGG - chr1_1:78123768-78123787 Msa0046100:intron 60.0%
ACCTCTCCCCTCAGTGCCAT+TGG + chr1_1:78123772-78123791 None:intergenic 60.0%
GATCTGCCGCGGACATTTCC+TGG - chr1_1:78124187-78124206 Msa0046100:intron 60.0%
GGGTGACCAGGAAATGTCCG+CGG + chr1_1:78124196-78124215 None:intergenic 60.0%
TCGTCCAAAGCAGGGTGACC+AGG + chr1_1:78124208-78124227 None:intergenic 60.0%
! TGGTCACCCTGCTTTGGACG+AGG - chr1_1:78124207-78124226 Msa0046100:intron 60.0%
! CACCCTGCTTTGGACGAGGA+TGG - chr1_1:78124211-78124230 Msa0046100:intron 60.0%
GTGCAGGTTGCATGGGTGAC+TGG - chr1_1:78125031-78125050 Msa0046100:CDS 60.0%
TCTAACAACAGGAGGGGGGG+CGG + chr1_1:78125807-78125826 None:intergenic 60.0%
AACCGTGGTCTCACTTGGCC+TGG - chr1_1:78127405-78127424 Msa0046100:intron 60.0%
TCACGGAAGCCCCTGTTTCC+AGG + chr1_1:78127426-78127445 None:intergenic 60.0%
GGGTAGGGTAATCCCCCAAG+TGG + chr1_1:78127740-78127759 None:intergenic 60.0%
GGGAACTGAGCGCCAAGGTA+AGG - chr1_1:78127966-78127985 Msa0046100:intron 60.0%
CGATGGATACCCCTACCAGG+AGG - chr1_1:78130116-78130135 Msa0046100:CDS 60.0%
CTCCTCAAACCGTCTGGGGA+AGG + chr1_1:78130412-78130431 None:intergenic 60.0%
GGAGGAGTTACCGGCATCCG+AGG - chr1_1:78123366-78123385 Msa0046100:three_prime_UTR 65.0%
TAACAACAGGAGGGGGGGCG+GGG + chr1_1:78125805-78125824 None:intergenic 65.0%
CTAACAACAGGAGGGGGGGC+GGG + chr1_1:78125806-78125825 None:intergenic 65.0%
GCCCTTCCCCAGACGGTTTG+AGG - chr1_1:78130407-78130426 Msa0046100:CDS 65.0%
GGAGGGGGGGCGGGGATAAA+AGG + chr1_1:78125797-78125816 None:intergenic 70.0%
CAGGCGGGAACTGAGCGCCA+AGG - chr1_1:78127961-78127980 Msa0046100:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 78122273 78131506 78122273 ID=Msa0046100;Name=Msa0046100
chr1_1 mRNA 78122273 78131506 78122273 ID=Msa0046100-mRNA-1;Parent=Msa0046100;Name=Msa0046100-mRNA-1;_AED=0.08;_eAED=0.08;_QI=175|0.88|0.88|1|1|1|18|1117|827
chr1_1 exon 78122273 78123491 78122273 ID=Msa0046100-mRNA-1:exon:26862;Parent=Msa0046100-mRNA-1
chr1_1 exon 78123590 78123710 78123590 ID=Msa0046100-mRNA-1:exon:26861;Parent=Msa0046100-mRNA-1
chr1_1 exon 78124042 78124166 78124042 ID=Msa0046100-mRNA-1:exon:26860;Parent=Msa0046100-mRNA-1
chr1_1 exon 78124795 78124896 78124795 ID=Msa0046100-mRNA-1:exon:26859;Parent=Msa0046100-mRNA-1
chr1_1 exon 78124980 78125060 78124980 ID=Msa0046100-mRNA-1:exon:26858;Parent=Msa0046100-mRNA-1
chr1_1 exon 78125797 78125866 78125797 ID=Msa0046100-mRNA-1:exon:26857;Parent=Msa0046100-mRNA-1
chr1_1 exon 78126656 78126717 78126656 ID=Msa0046100-mRNA-1:exon:26856;Parent=Msa0046100-mRNA-1
chr1_1 exon 78128001 78128377 78128001 ID=Msa0046100-mRNA-1:exon:26855;Parent=Msa0046100-mRNA-1
chr1_1 exon 78128476 78128559 78128476 ID=Msa0046100-mRNA-1:exon:26854;Parent=Msa0046100-mRNA-1
chr1_1 exon 78128674 78128771 78128674 ID=Msa0046100-mRNA-1:exon:26853;Parent=Msa0046100-mRNA-1
chr1_1 exon 78128877 78128932 78128877 ID=Msa0046100-mRNA-1:exon:26852;Parent=Msa0046100-mRNA-1
chr1_1 exon 78129037 78129103 78129037 ID=Msa0046100-mRNA-1:exon:26851;Parent=Msa0046100-mRNA-1
chr1_1 exon 78129311 78129369 78129311 ID=Msa0046100-mRNA-1:exon:26850;Parent=Msa0046100-mRNA-1
chr1_1 exon 78129479 78129592 78129479 ID=Msa0046100-mRNA-1:exon:26849;Parent=Msa0046100-mRNA-1
chr1_1 exon 78129704 78129889 78129704 ID=Msa0046100-mRNA-1:exon:26848;Parent=Msa0046100-mRNA-1
chr1_1 exon 78129990 78130631 78129990 ID=Msa0046100-mRNA-1:exon:26847;Parent=Msa0046100-mRNA-1
chr1_1 exon 78130828 78130897 78130828 ID=Msa0046100-mRNA-1:exon:26846;Parent=Msa0046100-mRNA-1
chr1_1 exon 78131264 78131506 78131264 ID=Msa0046100-mRNA-1:exon:26845;Parent=Msa0046100-mRNA-1
chr1_1 five_prime_UTR 78131332 78131506 78131332 ID=Msa0046100-mRNA-1:five_prime_utr;Parent=Msa0046100-mRNA-1
chr1_1 CDS 78131264 78131331 78131264 ID=Msa0046100-mRNA-1:cds;Parent=Msa0046100-mRNA-1
chr1_1 CDS 78130828 78130897 78130828 ID=Msa0046100-mRNA-1:cds;Parent=Msa0046100-mRNA-1
chr1_1 CDS 78129990 78130631 78129990 ID=Msa0046100-mRNA-1:cds;Parent=Msa0046100-mRNA-1
chr1_1 CDS 78129704 78129889 78129704 ID=Msa0046100-mRNA-1:cds;Parent=Msa0046100-mRNA-1
chr1_1 CDS 78129479 78129592 78129479 ID=Msa0046100-mRNA-1:cds;Parent=Msa0046100-mRNA-1
chr1_1 CDS 78129311 78129369 78129311 ID=Msa0046100-mRNA-1:cds;Parent=Msa0046100-mRNA-1
chr1_1 CDS 78129037 78129103 78129037 ID=Msa0046100-mRNA-1:cds;Parent=Msa0046100-mRNA-1
chr1_1 CDS 78128877 78128932 78128877 ID=Msa0046100-mRNA-1:cds;Parent=Msa0046100-mRNA-1
chr1_1 CDS 78128674 78128771 78128674 ID=Msa0046100-mRNA-1:cds;Parent=Msa0046100-mRNA-1
chr1_1 CDS 78128476 78128559 78128476 ID=Msa0046100-mRNA-1:cds;Parent=Msa0046100-mRNA-1
chr1_1 CDS 78128001 78128377 78128001 ID=Msa0046100-mRNA-1:cds;Parent=Msa0046100-mRNA-1
chr1_1 CDS 78126656 78126717 78126656 ID=Msa0046100-mRNA-1:cds;Parent=Msa0046100-mRNA-1
chr1_1 CDS 78125797 78125866 78125797 ID=Msa0046100-mRNA-1:cds;Parent=Msa0046100-mRNA-1
chr1_1 CDS 78124980 78125060 78124980 ID=Msa0046100-mRNA-1:cds;Parent=Msa0046100-mRNA-1
chr1_1 CDS 78124795 78124896 78124795 ID=Msa0046100-mRNA-1:cds;Parent=Msa0046100-mRNA-1
chr1_1 CDS 78124042 78124166 78124042 ID=Msa0046100-mRNA-1:cds;Parent=Msa0046100-mRNA-1
chr1_1 CDS 78123590 78123710 78123590 ID=Msa0046100-mRNA-1:cds;Parent=Msa0046100-mRNA-1
chr1_1 CDS 78123390 78123491 78123390 ID=Msa0046100-mRNA-1:cds;Parent=Msa0046100-mRNA-1
chr1_1 three_prime_UTR 78122273 78123389 78122273 ID=Msa0046100-mRNA-1:three_prime_utr;Parent=Msa0046100-mRNA-1
Gene Sequence

>Msa0046100

ATGAACAAGACTCGCAAATCTTCTTCTTCTTCTTCAAATTCTCCTGTAATTACATTCGATCACAAGAGGGATGCCTATGGATTTACTGTGCGACCTCAACACCTGCAAAGATACCGTGAGTACGCTAGCATTTACAAGGAGGAAGAAGAGGAAAGGTCCGAGCGGTGGAAGTCTTTTTTAGATAGGCAGGCCGAGACAGAGTCTTCTGTATTGGACACAAACAGAATACCTGTGGGGGAAGAGAACAAAGTTTCTGGTGCTGAATCTGTAGGACAAGAACCTGATGCTAGCTCAGAGAAGGGTGTTGATGGGCAACAAGCAAGCGCTGATACTCCACCTGAAAATGGTAGTCAAAAGGAGGAGTTACCGGCATCCGAGGAGACTAGAATTCATAGAGTCCAGTTATGGTCAACCATAAGATCATCTCTTAATACTATTGAGGATATGATGAGCATTCGTGTTAATAAGAAAACTGGGTCCGTAAAAGATGAAAGAAATAAGAAAGGTGTGGTAAAAGATGAGCTGGTCACTGAAACTGAGTCACTATCTCTTGCTGATGGTGCAAAATCATCAAAAGGAGCATGTGAGGAAGATTCTGACGAGGAGTTCTATGATGTTGAGAGGTCAGACCCTAGTCTAGATACTCCTCTTGTTGATGGCTTGAGTACCTCAACAAATGGTATTGCTGCTGCTGCTGCACCACTAGAGGCTTCGTGTCCTTGGAAAGAAGAGTTGGAAGTTCTTGTTCGTGGGGGAGTTCCAATGGCACTGAGGGGAGAGCTCTGGCAAGCTTTTGTGGGTGTCAAAGCAAGGCGGGTAGAGAAGTATTATCAGGATCTACTGGCCTCCAATGGTGATTCTGGAATTAAAAGTAATCATCAAAACGGGCAGTTAGATGACAATGATGGGAAAACAAATGCAGAATTCATGCATGTACCAGAAAAATGGAAAGGACAGATTGAGAAGGATCTGCCGCGGACATTTCCTGGTCACCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAATCCCTCTGTTGGTTACTGTCAGGCCATGAATTTTTTTGCTGGCTTATTGTTGCTTTTGATGCCTGAGGAAAATGCCTTTTGGACCTTGATGGGCATTTTAGATGATTATTTTGATGGCTATTATTCAGAGGATATGATAGAGTCTCAGGTGGATCAACTTGTTTTTGAAGAGTTGGTGCGGGAGAGGTTTCCCAAATTGGGTTTCCAATCATCTAGATTATCTGGGAGTGCAGGTTGCATGGGTGACTGGACCATGGTTTCTTTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGGTCAGTGCTTCGAGTGTGGGATGTGCTTCTTTTTGAAGGAAACCGAGTCATGCTATTTAGAACTGCAGTTGCTTTAATGGAGCTATATGGTCCAGCCTTGGTAACAACAAAGGATGCTGGAGATGCAGTAACTTTACTTCAGTCATTAGCCGGCTCCACATTTGATAGCAGTCAGCTTGTTTTGACAGCTTGCATGGGTTACCAAAATATAAATGAAGTTCGATTGCAGGAGCTGAGGAATAAACATAGGCCAGCTGTAATAGCTGCAATTGAAGAAAGATCAAAAGGGCTTAAAGCTTTGAGGGATGCTAAGGGTCTGGTATCAAAGCTATTTGAGCAATCGAATAATGCGCAAGTGCTTGGGAATTTATCCCGTACAGAATCTGGTTCTACAAATGCAGATGAAATTTTGATTAGTCTTACTGGAGAGGGTGAGATAGATTCAGCTCCAGATCTTCCAGAGCAGATTGCATGGTTGAAAGTTGAACTTTGCAGATTATTAGAAGAGAAAAGATCAGCTATTCTCAGAGCAGAGGAGCTTGAAACAGCATTAATGGAGATGGTTAAGCAGGACAACAGGCGGGAACTGAGCGCCAAGGTAGAGCGACTAGAAGAAGAGGTTGCTGAGCTTCGACAAGCACTTTCTGATAAACAAGAACAGGAAACTGCAATGCTTCAGGTCTTGATGCGGGTAGAGCAAGAACAAAAGGTTACAGAGGATGCTCGGAGATTTGCTGAGCAAGATGCAACTGCACAGAGATATGCTTCCCAAGTGCTTCAGGAAAAGTATGAAGAAGCAACTGTTGCACTTGCAGAAATGGAGAAGAGAGCAGTTATGGCTGAGTCTATGCTGGAAGCTACTTTGCAGTATCAGTCTGGCCAAACTAAACTGCAACCATCTCCACGATCTTCACAGCCAGAATCTCCCGGATCTAGAAACAATCAAGAGCCTACGATGGATACCCCTACCAGGAGGATAAGTTTGCTTTCTCGACCATTTGGACTTGGATGGGGTGATCGAAACAAGGGGAAACCTACTAATGTGGAAGAACCAGCTGTAGTAGAAAGCCCTGTAAGTCAACATGAGGGAAATGGCGTTAAAGTACAAGATGAGTTGGAAACAAGATAG
Protein sequence

>Msa0046100

MNKTRKSSSSSSNSPVITFDHKRDAYGFTVRPQHLQRYREYASIYKEEEEERSERWKSFLDRQAETESSVLDTNRIPVGEENKVSGAESVGQEPDASSEKGVDGQQASADTPPENGSQKEELPASEETRIHRVQLWSTIRSSLNTIEDMMSIRVNKKTGSVKDERNKKGVVKDELVTETESLSLADGAKSSKGACEEDSDEEFYDVERSDPSLDTPLVDGLSTSTNGIAAAAAPLEASCPWKEELEVLVRGGVPMALRGELWQAFVGVKARRVEKYYQDLLASNGDSGIKSNHQNGQLDDNDGKTNAEFMHVPEKWKGQIEKDLPRTFPGHPALDEDGRNALRRLLTAYARHNPSVGYCQAMNFFAGLLLLLMPEENAFWTLMGILDDYFDGYYSEDMIESQVDQLVFEELVRERFPKLGFQSSRLSGSAGCMGDWTMVSFHFCEHASLGKWSVLRVWDVLLFEGNRVMLFRTAVALMELYGPALVTTKDAGDAVTLLQSLAGSTFDSSQLVLTACMGYQNINEVRLQELRNKHRPAVIAAIEERSKGLKALRDAKGLVSKLFEQSNNAQVLGNLSRTESGSTNADEILISLTGEGEIDSAPDLPEQIAWLKVELCRLLEEKRSAILRAEELETALMEMVKQDNRRELSAKVERLEEEVAELRQALSDKQEQETAMLQVLMRVEQEQKVTEDARRFAEQDATAQRYASQVLQEKYEEATVALAEMEKRAVMAESMLEATLQYQSGQTKLQPSPRSSQPESPGSRNNQEPTMDTPTRRISLLSRPFGLGWGDRNKGKPTNVEEPAVVESPVSQHEGNGVKVQDELETR*