Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713790 | RHN53916.1 | 99.320 | 441 | 2 | 1 | 1 | 441 | 159 | 598 | 0.0 | 897 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713790 | sp|B5X4Z4|NAGS2_ARATH | 73.394 | 436 | 111 | 2 | 3 | 433 | 175 | 610 | 0.0 | 660 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713790 | A0A396HKT9 | 99.320 | 441 | 2 | 1 | 1 | 441 | 159 | 598 | 0.0 | 897 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0713790 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032110 | Msa0713790 | 0.800027 | 1.746873e-48 | -8.615850e-47 |
| Msa0032840 | Msa0713790 | -0.809279 | 2.046590e-50 | -8.615850e-47 |
| Msa0046100 | Msa0713790 | 0.805216 | 1.485661e-49 | -8.615850e-47 |
| Msa0049650 | Msa0713790 | -0.804911 | 1.720602e-49 | -8.615850e-47 |
| Msa0064350 | Msa0713790 | 0.825503 | 4.523017e-54 | -8.615850e-47 |
| Msa0064380 | Msa0713790 | 0.806707 | 7.216603e-50 | -8.615850e-47 |
| Msa0084650 | Msa0713790 | 0.832290 | 1.028732e-55 | -8.615850e-47 |
| Msa0097840 | Msa0713790 | 0.803093 | 4.109690e-49 | -8.615850e-47 |
| Msa0113790 | Msa0713790 | 0.810962 | 8.881435e-51 | -8.615850e-47 |
| Msa0602870 | Msa0713790 | 0.817084 | 3.961225e-52 | -8.615850e-47 |
| Msa0610590 | Msa0713790 | 0.804699 | 1.906078e-49 | -8.615850e-47 |
| Msa0643890 | Msa0713790 | 0.811653 | 6.286005e-51 | -8.615850e-47 |
| Msa0661190 | Msa0713790 | -0.804215 | 2.404139e-49 | -8.615850e-47 |
| Msa0673010 | Msa0713790 | -0.822389 | 2.431881e-53 | -8.615850e-47 |
| Msa0713790 | Msa0729720 | 0.800927 | 1.145177e-48 | -8.615850e-47 |
| Msa0713790 | Msa0756030 | 0.933232 | 2.565942e-95 | -8.615850e-47 |
| Msa0713790 | Msa0797750 | 0.806649 | 7.422788e-50 | -8.615850e-47 |
| Msa0713790 | Msa0820770 | 0.803865 | 2.842955e-49 | -8.615850e-47 |
| Msa0713790 | Msa0835280 | 0.806122 | 9.589914e-50 | -8.615850e-47 |
| Msa0713790 | Msa0837660 | 0.962991 | 1.532489e-121 | -8.615850e-47 |
| Msa0713790 | Msa1078580 | -0.805265 | 1.450887e-49 | -8.615850e-47 |
| Msa0713790 | Msa1078750 | -0.800112 | 1.679417e-48 | -8.615850e-47 |
| Msa0713790 | Msa1116130 | -0.822229 | 2.648935e-53 | -8.615850e-47 |
| Msa0713790 | Msa1199990 | 0.814137 | 1.795600e-51 | -8.615850e-47 |
| Msa0713790 | Msa1303780 | 0.800188 | 1.620356e-48 | -8.615850e-47 |
| Msa0713790 | Msa1304820 | 0.819046 | 1.426238e-52 | -8.615850e-47 |
| Msa0713790 | Msa1340650 | 0.807623 | 4.617716e-50 | -8.615850e-47 |
| Msa0713790 | Msa1345360 | 0.804469 | 2.127913e-49 | -8.615850e-47 |
| Msa0713790 | Msa1363120 | 0.828783 | 7.419327e-55 | -8.615850e-47 |
| Msa0713790 | Msa1364910 | 0.804358 | 2.244183e-49 | -8.615850e-47 |
| Msa0713790 | Msa1370340 | 0.806921 | 6.502546e-50 | -8.615850e-47 |
| Msa0713790 | Msa1382540 | 0.814896 | 1.219537e-51 | -8.615850e-47 |
| Msa0713790 | Msa1452240 | 0.810583 | 1.072472e-50 | -8.615850e-47 |
| Msa0713790 | Msa1453780 | -0.804576 | 2.021318e-49 | -8.615850e-47 |
| Msa0191050 | Msa0713790 | 0.807613 | 4.640520e-50 | -8.615850e-47 |
| Msa0230550 | Msa0713790 | -0.800916 | 1.151175e-48 | -8.615850e-47 |
| Msa0233350 | Msa0713790 | 0.801074 | 1.068978e-48 | -8.615850e-47 |
| Msa0373930 | Msa0713790 | 0.802743 | 4.854594e-49 | -8.615850e-47 |
| Msa0275600 | Msa0713790 | 0.805758 | 1.143792e-49 | -8.615850e-47 |
| Msa0282250 | Msa0713790 | 0.801040 | 1.086227e-48 | -8.615850e-47 |
| Msa0298390 | Msa0713790 | -0.810221 | 1.283703e-50 | -8.615850e-47 |
| Msa0312990 | Msa0713790 | 0.809234 | 2.092915e-50 | -8.615850e-47 |
| Msa0356960 | Msa0713790 | 0.803795 | 2.939265e-49 | -8.615850e-47 |
| Msa0493630 | Msa0713790 | 0.800808 | 1.211322e-48 | -8.615850e-47 |
| Msa0578970 | Msa0713790 | 0.800377 | 1.482800e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713790 | MtrunA17_Chr5g0401051 | 99.320 | 441 | 2 | 1 | 1 | 441 | 159 | 598 | 0.0 | 897 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713790 | AT4G37670.2 | 73.394 | 436 | 111 | 2 | 3 | 433 | 175 | 610 | 0.0 | 660 |
| Msa0713790 | AT2G22910.1 | 72.350 | 434 | 117 | 2 | 3 | 433 | 168 | 601 | 0.0 | 644 |
| Msa0713790 | AT4G37670.1 | 73.025 | 367 | 94 | 2 | 3 | 364 | 175 | 541 | 0.0 | 544 |
Find 123 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGCTTGTGCCTTGGCAAT+TGG | 0.248266 | 5_1:+6233195 | Msa0713790:CDS |
| ACAGTAATTCCACTCTTATT+TGG | 0.256128 | 5_1:-6235777 | None:intergenic |
| TCTCCTCAGGGTAAGGAAAA+AGG | 0.290072 | 5_1:-6234819 | None:intergenic |
| CAGCTTGTGCCTTGGCAATT+GGG | 0.298414 | 5_1:+6233196 | Msa0713790:CDS |
| CAGTAACATGGTCAATTATA+AGG | 0.298468 | 5_1:-6232391 | None:intergenic |
| GACCATGTTACTGCGTTTAC+AGG | 0.302147 | 5_1:+6232401 | Msa0713790:five_prime_UTR |
| GGTCCAATACTTGATGAAAA+TGG | 0.316810 | 5_1:+6233246 | Msa0713790:CDS |
| AGCGAGCAAGGCTTTGCTAT+TGG | 0.336026 | 5_1:+6233510 | Msa0713790:CDS |
| TTAAAATTGTTATGCTCAAC+AGG | 0.336039 | 5_1:-6233384 | None:intergenic |
| TGAAATATGTGCAGATTATA+TGG | 0.338432 | 5_1:+6235407 | Msa0713790:intron |
| CAAACAACTTATTCAGCCTT+TGG | 0.343314 | 5_1:+6234582 | Msa0713790:CDS |
| TTGGAATTGTTTACAAGAGA+TGG | 0.378945 | 5_1:+6233958 | Msa0713790:CDS |
| AGCTGCTATTTCACTTTGCT+CGG | 0.382328 | 5_1:-6233325 | None:intergenic |
| TTGTTGGATGGCACTATTAG+TGG | 0.387463 | 5_1:+6233925 | Msa0713790:CDS |
| GCAGTCAAATCTCCACCTAA+TGG | 0.388073 | 5_1:+6233411 | Msa0713790:CDS |
| TGCCCTTGGCCACGGCAATC+AGG | 0.388955 | 5_1:-6234874 | None:intergenic |
| GGAATTGATTATGGGTCAAC+TGG | 0.390661 | 5_1:+6232771 | Msa0713790:CDS |
| CATATAATACTTAGAATTGC+GGG | 0.398277 | 5_1:-6235742 | None:intergenic |
| TTTGAGAATGGAGATGGCTT+AGG | 0.403018 | 5_1:+6233483 | Msa0713790:CDS |
| TCGAGCTACAAGATTGTTAC+GGG | 0.407532 | 5_1:-6235905 | None:intergenic |
| TTTGGAGGCATGTGGCATAC+TGG | 0.410523 | 5_1:+6234600 | Msa0713790:CDS |
| TGATTGCCGTGGCCAAGGGC+AGG | 0.426100 | 5_1:+6234876 | Msa0713790:CDS |
| ATGACTAAGGTTTGAATTGT+GGG | 0.427626 | 5_1:-6236020 | None:intergenic |
| GCAATTTGTCTCCCTGCCCT+TGG | 0.430775 | 5_1:-6234888 | None:intergenic |
| ACCTCTGCACACTTCTCCTC+AGG | 0.437888 | 5_1:-6234832 | None:intergenic |
| GTGGTCGGTGGAATTGATTA+TGG | 0.441744 | 5_1:+6232762 | Msa0713790:CDS |
| GTTGGATAATTTCGTTGTTG+TGG | 0.449871 | 5_1:+6234765 | Msa0713790:CDS |
| TTCTTTCTCCAGCACCTATG+AGG | 0.453361 | 5_1:+6233167 | Msa0713790:intron |
| ACAAGCTGTTGCAACCTCAT+AGG | 0.454255 | 5_1:-6233181 | None:intergenic |
| ATGTCTACGAATATTGCATA+TGG | 0.454955 | 5_1:-6232543 | None:intergenic |
| TTGTAGCTCGAATCTGTGTT+TGG | 0.456577 | 5_1:+6235917 | Msa0713790:three_prime_UTR |
| ATTCAATACTTCACCAGAGC+TGG | 0.458082 | 5_1:-6232877 | None:intergenic |
| GAACGTCTAAGTCGAATGAA+TGG | 0.458588 | 5_1:+6233540 | Msa0713790:CDS |
| GTGAAAGCGGTTGAGGAAGA+AGG | 0.459644 | 5_1:+6233354 | Msa0713790:CDS |
| CGCATGCGTGAGAGACTTGA+TGG | 0.466167 | 5_1:+6232819 | Msa0713790:CDS |
| GAGAAGAAAGCAGCATCTCT+TGG | 0.466675 | 5_1:+6235429 | Msa0713790:CDS |
| GGTTCAAAGAGTTCACTTGT+TGG | 0.467382 | 5_1:+6233909 | Msa0713790:CDS |
| TTCGAGCTACAAGATTGTTA+CGG | 0.468888 | 5_1:-6235906 | None:intergenic |
| TCTCCTGATTGCCGTGGCCA+AGG | 0.471147 | 5_1:+6234871 | Msa0713790:CDS |
| TTGAGAATGGAGATGGCTTA+GGG | 0.472572 | 5_1:+6233484 | Msa0713790:CDS |
| TCGAATCTGTGTTTGGTACC+AGG | 0.482437 | 5_1:+6235924 | Msa0713790:three_prime_UTR |
| GGAGCAAGGCTAAGTATGTT+GGG | 0.485838 | 5_1:+6232423 | Msa0713790:five_prime_UTR |
| TAACTATGTGAAAGCGGTTG+AGG | 0.486501 | 5_1:+6233347 | Msa0713790:CDS |
| AAGAGTGGAATTACTGTTGG+TGG | 0.488225 | 5_1:+6235783 | Msa0713790:CDS |
| GAATGGGTACCTGTCAGAAT+TGG | 0.488645 | 5_1:+6233557 | Msa0713790:CDS |
| GGGAGCAAGGCTAAGTATGT+TGG | 0.490609 | 5_1:+6232422 | Msa0713790:five_prime_UTR |
| TGGTAACTTTCTTGCAGCCA+AGG | 0.491225 | 5_1:+6232610 | Msa0713790:CDS |
| AGCTTGTGCCTTGGCAATTG+GGG | 0.494564 | 5_1:+6233197 | Msa0713790:CDS |
| CAAGAGGCAAGAAACGAATC+AGG | 0.494769 | 5_1:-6233272 | None:intergenic |
| GCACACTTCTCCTCAGGGTA+AGG | 0.495453 | 5_1:-6234826 | None:intergenic |
| CATGACTAAGGTTTGAATTG+TGG | 0.496054 | 5_1:-6236021 | None:intergenic |
| AACGCTGCAATGTGTGCAGC+AGG | 0.498191 | 5_1:+6232476 | Msa0713790:exon |
| AAGTTAATATGCGTTATAGA+TGG | 0.498769 | 5_1:+6233225 | Msa0713790:CDS |
| CAAAGAGTTCACTTGTTGGA+TGG | 0.500446 | 5_1:+6233913 | Msa0713790:CDS |
| ACAACTTATTCAGCCTTTGG+AGG | 0.501598 | 5_1:+6234585 | Msa0713790:CDS |
| CTCCTGATTGCCGTGGCCAA+GGG | 0.501830 | 5_1:+6234872 | Msa0713790:CDS |
| AACATGTCTGCTTCTTCAAG+AGG | 0.505053 | 5_1:-6233288 | None:intergenic |
| ATTGTTTACAAGAGATGGGA+TGG | 0.511266 | 5_1:+6233963 | Msa0713790:CDS |
| TGTCTCCCTGCCCTTGGCCA+CGG | 0.513144 | 5_1:-6234882 | None:intergenic |
| TTTGAATTGTGGGCAGGACA+AGG | 0.516611 | 5_1:-6236010 | None:intergenic |
| AACGTCTAAGTCGAATGAAT+GGG | 0.522685 | 5_1:+6233541 | Msa0713790:CDS |
| TGGAATTGTTTACAAGAGAT+GGG | 0.523017 | 5_1:+6233959 | Msa0713790:CDS |
| AACTTGGGCTACTCCAGCTC+TGG | 0.523097 | 5_1:+6232864 | Msa0713790:CDS |
| CTGCTGTACGTGTTGTAAGT+AGG | 0.526017 | 5_1:-6235467 | None:intergenic |
| GGATGGGAACAATGGTGGCT+AGG | 0.526598 | 5_1:+6233980 | Msa0713790:CDS |
| GGTAAGTGTGATTGGAAGCA+TGG | 0.528087 | 5_1:+6235850 | Msa0713790:three_prime_UTR |
| TTCGTTGTTGTGGAAAGAGA+AGG | 0.528576 | 5_1:+6234775 | Msa0713790:CDS |
| GAGCAAGGCTTTGCTATTGG+AGG | 0.529772 | 5_1:+6233513 | Msa0713790:CDS |
| TGGTCGGTGGAATTGATTAT+GGG | 0.530856 | 5_1:+6232763 | Msa0713790:CDS |
| CTGCAGCAGCCAATTCTGAC+AGG | 0.535179 | 5_1:-6233566 | None:intergenic |
| GATTGCCGTGGCCAAGGGCA+GGG | 0.536027 | 5_1:+6234877 | Msa0713790:CDS |
| CTTGACAGGTTTGTGAGGCG+TGG | 0.536755 | 5_1:+6235660 | Msa0713790:intron |
| CTAAGGTTTGAATTGTGGGC+AGG | 0.541457 | 5_1:-6236016 | None:intergenic |
| ATAGCAGCTAAACTTTCAGT+TGG | 0.541876 | 5_1:+6232515 | Msa0713790:CDS |
| GCAACTTTCCACAATGGTGT+TGG | 0.543734 | 5_1:+6233459 | Msa0713790:CDS |
| TCATATAATACTTAGAATTG+CGG | 0.547939 | 5_1:-6235743 | None:intergenic |
| TTTATAGCTGCTACAAACGT+TGG | 0.550580 | 5_1:+6234747 | Msa0713790:intron |
| CACAATTCAAACCTTAGTCA+TGG | 0.553441 | 5_1:+6236022 | Msa0713790:three_prime_UTR |
| ACTCCTCAACTCCATGACTA+AGG | 0.559553 | 5_1:-6236033 | None:intergenic |
| GGCTTAGGGACTAGCGAGCA+AGG | 0.560101 | 5_1:+6233498 | Msa0713790:CDS |
| TTACAACACGTACAGCAGAT+TGG | 0.561074 | 5_1:+6235472 | Msa0713790:CDS |
| GGGCAGGGAGACAAATTGCT+TGG | 0.563989 | 5_1:+6234892 | Msa0713790:CDS |
| ATGGAAAACGCATTACAGAA+TGG | 0.566481 | 5_1:+6233430 | Msa0713790:CDS |
| TTGTGCCTTGGCAATTGGGG+CGG | 0.568264 | 5_1:+6233200 | Msa0713790:CDS |
| AACTTCTTGACAGGTTTGTG+AGG | 0.570293 | 5_1:+6235655 | Msa0713790:intron |
| AGACATGTTAATTCGCAAGC+GGG | 0.573614 | 5_1:+6233302 | Msa0713790:CDS |
| GAATTGATTATGGGTCAACT+GGG | 0.574055 | 5_1:+6232772 | Msa0713790:CDS |
| GGTTAAGCGGTCTGATGAAG+AGG | 0.575532 | 5_1:+6234621 | Msa0713790:CDS |
| GTAAGTGTGATTGGAAGCAT+GGG | 0.577212 | 5_1:+6235851 | Msa0713790:three_prime_UTR |
| CAGAGAAGAGGGGTGGTCGG+TGG | 0.577629 | 5_1:+6232750 | Msa0713790:intron |
| ACCATGTTACTGCGTTTACA+GGG | 0.581565 | 5_1:+6232402 | Msa0713790:five_prime_UTR |
| AGCAGCTAACTATGTGAAAG+CGG | 0.584271 | 5_1:+6233341 | Msa0713790:CDS |
| AATAAGAGTGGAATTACTGT+TGG | 0.587427 | 5_1:+6235780 | Msa0713790:CDS |
| CTTGTCCGCCCCAATTGCCA+AGG | 0.592760 | 5_1:-6233205 | None:intergenic |
| TGACAGAGAAGAGGGGTGGT+CGG | 0.595410 | 5_1:+6232747 | Msa0713790:intron |
| TTGAATTGTGGGCAGGACAA+GGG | 0.600713 | 5_1:-6236009 | None:intergenic |
| ATTCAGCCTTTGGAGGCATG+TGG | 0.604861 | 5_1:+6234592 | Msa0713790:CDS |
| ATATGCAATATTCGTAGACA+TGG | 0.605536 | 5_1:+6232545 | Msa0713790:CDS |
| ACAACAGATTTACAATACAA+AGG | 0.606913 | 5_1:-6235967 | None:intergenic |
| GGTTGCAACAGCTTGTGCCT+TGG | 0.608428 | 5_1:+6233188 | Msa0713790:CDS |
| CTACGAATATTGCATATGGA+AGG | 0.610959 | 5_1:-6232539 | None:intergenic |
| AAGAGATGGGATGGGAACAA+TGG | 0.612647 | 5_1:+6233972 | Msa0713790:CDS |
| TTGTTTACAAGAGATGGGAT+GGG | 0.612686 | 5_1:+6233964 | Msa0713790:CDS |
| TCCCTGTAAACGCAGTAACA+TGG | 0.613256 | 5_1:-6232403 | None:intergenic |
| TACTGCGTTTACAGGGAGCA+AGG | 0.617201 | 5_1:+6232409 | Msa0713790:five_prime_UTR |
| TCTCAAAACCAACACCATTG+TGG | 0.620130 | 5_1:-6233467 | None:intergenic |
| AAGCTTCTACCAAATAAGAG+TGG | 0.625840 | 5_1:+6235768 | Msa0713790:CDS |
| AGATGGGATGGGAACAATGG+TGG | 0.628080 | 5_1:+6233975 | Msa0713790:CDS |
| AGAGCTGGAGTAGCCCAAGT+TGG | 0.630783 | 5_1:-6232862 | None:intergenic |
| AGTATGCCACATGCCTCCAA+AGG | 0.632526 | 5_1:-6234598 | None:intergenic |
| CATGTGGCATACTGGTTAAG+CGG | 0.633218 | 5_1:+6234608 | Msa0713790:CDS |
| CAGACATGTTAATTCGCAAG+CGG | 0.635149 | 5_1:+6233301 | Msa0713790:CDS |
| GCAGTATCTCCTGATTGCCG+TGG | 0.635516 | 5_1:+6234865 | Msa0713790:CDS |
| GAAGGTCAAATAATTGCATG+TGG | 0.638311 | 5_1:+6234793 | Msa0713790:CDS |
| AATGCTACATGTCGAAGACC+TGG | 0.640649 | 5_1:-6235942 | None:intergenic |
| CCTCTGCACACTTCTCCTCA+GGG | 0.642147 | 5_1:-6234831 | None:intergenic |
| GCTGCAATGTGTGCAGCAGG+AGG | 0.644204 | 5_1:+6232479 | Msa0713790:exon |
| CCCTGAGGAGAAGTGTGCAG+AGG | 0.655036 | 5_1:+6234831 | Msa0713790:CDS |
| GGTCAAATAATTGCATGTGG+TGG | 0.656987 | 5_1:+6234796 | Msa0713790:CDS |
| GTTAGTGTCAGTGTTACAAG+TGG | 0.659841 | 5_1:+6232590 | Msa0713790:CDS |
| CATAATGCAACTTTCCACAA+TGG | 0.674650 | 5_1:+6233453 | Msa0713790:CDS |
| AATTGATTATGGGTCAACTG+GGG | 0.744930 | 5_1:+6232773 | Msa0713790:CDS |
| ATGCGTGAGAGACTTGATGG+TGG | 0.746452 | 5_1:+6232822 | Msa0713790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTATATTAAAAAGATG+TGG | - | chr5_1:6235383-6235402 | None:intergenic | 10.0% |
| !! | GAAAATTAAAAGATATAACA+TGG | - | chr5_1:6233612-6233631 | None:intergenic | 15.0% |
| !! | TTGAAATTATTTGTAAATGA+TGG | + | chr5_1:6234935-6234954 | Msa0713790:intron | 15.0% |
| !!! | TAATAATTTGTTCTATGTAT+TGG | + | chr5_1:6234973-6234992 | Msa0713790:intron | 15.0% |
| !!! | AATAATTTGTTCTATGTATT+GGG | + | chr5_1:6234974-6234993 | Msa0713790:intron | 15.0% |
| !!! | TATAGTTATTTTAACCAACT+TGG | + | chr5_1:6232848-6232867 | Msa0713790:CDS | 20.0% |
| !!! | ATAGTTATTTTAACCAACTT+GGG | + | chr5_1:6232849-6232868 | Msa0713790:CDS | 20.0% |
| !!! | TTCTAAACTTTTAAGTATGT+GGG | - | chr5_1:6234461-6234480 | None:intergenic | 20.0% |
| !!! | TTTCTAAACTTTTAAGTATG+TGG | - | chr5_1:6234462-6234481 | None:intergenic | 20.0% |
| !!! | AATTATTTGTAAATGATGGA+TGG | + | chr5_1:6234939-6234958 | Msa0713790:intron | 20.0% |
| !!! | TGTATAATTTTAATCATCGA+AGG | + | chr5_1:6235335-6235354 | Msa0713790:intron | 20.0% |
| !!! | AAGACAAGTTTTTTGTTTAA+AGG | + | chr5_1:6235562-6235581 | Msa0713790:intron | 20.0% |
| !!! | ATTGTTTTCTTTTTCTTTTC+AGG | - | chr5_1:6235714-6235733 | None:intergenic | 20.0% |
| !! | TCATATAATACTTAGAATTG+CGG | - | chr5_1:6235746-6235765 | None:intergenic | 20.0% |
| ! | TGAATCATAAAATCAAACCT+TGG | - | chr5_1:6232630-6232649 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGACAGAGAAG+AGG | + | chr5_1:6232738-6232757 | Msa0713790:intron | 25.0% |
| !!! | TTTTTTTTTGACAGAGAAGA+GGG | + | chr5_1:6232739-6232758 | Msa0713790:intron | 25.0% |
| !!! | ATCTGATATGTACTTTTTCT+AGG | + | chr5_1:6233025-6233044 | Msa0713790:intron | 25.0% |
| ! | AAGTTAATATGCGTTATAGA+TGG | + | chr5_1:6233225-6233244 | Msa0713790:CDS | 25.0% |
| ! | TTAAAATTGTTATGCTCAAC+AGG | - | chr5_1:6233387-6233406 | None:intergenic | 25.0% |
| !! | GTTGAGCATAACAATTTTAA+CGG | + | chr5_1:6233387-6233406 | Msa0713790:CDS | 25.0% |
| !!! | TTGAGCATAACAATTTTAAC+GGG | + | chr5_1:6233388-6233407 | Msa0713790:CDS | 25.0% |
| ! | ATCAATATCAGACCAATAAT+AGG | + | chr5_1:6233709-6233728 | Msa0713790:intron | 25.0% |
| !!! | TATTAGTGGAGTTTTATTGT+TGG | + | chr5_1:6233939-6233958 | Msa0713790:CDS | 25.0% |
| !!! | TTGCAAGTTATTTTGTTCAA+GGG | + | chr5_1:6234044-6234063 | Msa0713790:intron | 25.0% |
| ! | TAAAAGCTAAAACAACTTCA+AGG | - | chr5_1:6234118-6234137 | None:intergenic | 25.0% |
| ! | TAACTAATGGTTTCTTGAAA+GGG | - | chr5_1:6234276-6234295 | None:intergenic | 25.0% |
| !!! | TCGATCTTTTTTGTAACTAA+TGG | - | chr5_1:6234289-6234308 | None:intergenic | 25.0% |
| ! | TTAGTTACAAAAAAGATCGA+AGG | + | chr5_1:6234289-6234308 | Msa0713790:intron | 25.0% |
| !! | AATAAAACATCGTAGGTTTT+TGG | - | chr5_1:6234437-6234456 | None:intergenic | 25.0% |
| ! | AATGTTTAGACAAATTACCA+CGG | - | chr5_1:6234705-6234724 | None:intergenic | 25.0% |
| !! | AAGCTCTTTTGTAACAAATA+TGG | - | chr5_1:6235060-6235079 | None:intergenic | 25.0% |
| !! | AATCATAATTCAGGTTTACA+TGG | - | chr5_1:6235111-6235130 | None:intergenic | 25.0% |
| ! | ACCTGAATTATGATTATGAA+AGG | + | chr5_1:6235116-6235135 | Msa0713790:intron | 25.0% |
| ! | TCCTTTCATAATCATAATTC+AGG | - | chr5_1:6235120-6235139 | None:intergenic | 25.0% |
| ! | ATTAATTCACAAGACATGTT+TGG | + | chr5_1:6235146-6235165 | Msa0713790:intron | 25.0% |
| ! | TTAATTCACAAGACATGTTT+GGG | + | chr5_1:6235147-6235166 | Msa0713790:intron | 25.0% |
| !! | GTTTCAAGAAGATATTTTTC+AGG | + | chr5_1:6235285-6235304 | Msa0713790:intron | 25.0% |
| ! | TGAAATATGTGCAGATTATA+TGG | + | chr5_1:6235407-6235426 | Msa0713790:intron | 25.0% |
| ! | CATATAATACTTAGAATTGC+GGG | - | chr5_1:6235745-6235764 | None:intergenic | 25.0% |
| ! | ACAACAGATTTACAATACAA+AGG | - | chr5_1:6235970-6235989 | None:intergenic | 25.0% |
| CAGTAACATGGTCAATTATA+AGG | - | chr5_1:6232394-6232413 | None:intergenic | 30.0% | |
| ATGTCTACGAATATTGCATA+TGG | - | chr5_1:6232546-6232565 | None:intergenic | 30.0% | |
| ATATGCAATATTCGTAGACA+TGG | + | chr5_1:6232545-6232564 | Msa0713790:CDS | 30.0% | |
| !!! | TTTTTTTTGACAGAGAAGAG+GGG | + | chr5_1:6232740-6232759 | Msa0713790:intron | 30.0% |
| !! | TGAGCATAACAATTTTAACG+GGG | + | chr5_1:6233389-6233408 | Msa0713790:CDS | 30.0% |
| AATATCAGACCAATAATAGG+TGG | + | chr5_1:6233712-6233731 | Msa0713790:intron | 30.0% | |
| ! | ATACCATCTTCCATTTTATC+AGG | + | chr5_1:6233882-6233901 | Msa0713790:intron | 30.0% |
| ! | TACCATCTTCCATTTTATCA+GGG | + | chr5_1:6233883-6233902 | Msa0713790:intron | 30.0% |
| TTGGAATTGTTTACAAGAGA+TGG | + | chr5_1:6233958-6233977 | Msa0713790:CDS | 30.0% | |
| TGGAATTGTTTACAAGAGAT+GGG | + | chr5_1:6233959-6233978 | Msa0713790:CDS | 30.0% | |
| !! | CTTGCAAGTTATTTTGTTCA+AGG | + | chr5_1:6234043-6234062 | Msa0713790:intron | 30.0% |
| AACTAATTGCCAAGAGAAAT+AGG | + | chr5_1:6234072-6234091 | Msa0713790:intron | 30.0% | |
| ! | TTTCAAACACCTATTTCTCT+TGG | - | chr5_1:6234084-6234103 | None:intergenic | 30.0% |
| TTTCTTGAAAGGGAAAACAT+GGG | - | chr5_1:6234266-6234285 | None:intergenic | 30.0% | |
| GTAACTAATGGTTTCTTGAA+AGG | - | chr5_1:6234277-6234296 | None:intergenic | 30.0% | |
| ! | TCTATGTATTGGGATGTTTT+CGG | + | chr5_1:6234984-6235003 | Msa0713790:intron | 30.0% |
| ATCACTAGTACAACTATTCT+GGG | - | chr5_1:6235177-6235196 | None:intergenic | 30.0% | |
| TATCACTAGTACAACTATTC+TGG | - | chr5_1:6235178-6235197 | None:intergenic | 30.0% | |
| ! | AATGACATTGATTGTGGATA+AGG | - | chr5_1:6235530-6235549 | None:intergenic | 30.0% |
| ! | GTGAAAAATGACATTGATTG+TGG | - | chr5_1:6235536-6235555 | None:intergenic | 30.0% |
| ACAGTAATTCCACTCTTATT+TGG | - | chr5_1:6235780-6235799 | None:intergenic | 30.0% | |
| AATAAGAGTGGAATTACTGT+TGG | + | chr5_1:6235780-6235799 | Msa0713790:CDS | 30.0% | |
| ! | AGAACTATTTTCCAGTTACA+AGG | + | chr5_1:6235826-6235845 | Msa0713790:exon | 30.0% |
| ! | GAACTATTTTCCAGTTACAA+GGG | + | chr5_1:6235827-6235846 | Msa0713790:exon | 30.0% |
| ! | AACTATTTTCCAGTTACAAG+GGG | + | chr5_1:6235828-6235847 | Msa0713790:three_prime_UTR | 30.0% |
| ATGACTAAGGTTTGAATTGT+GGG | - | chr5_1:6236023-6236042 | None:intergenic | 30.0% | |
| ATAGCAGCTAAACTTTCAGT+TGG | + | chr5_1:6232515-6232534 | Msa0713790:CDS | 35.0% | |
| CTACGAATATTGCATATGGA+AGG | - | chr5_1:6232542-6232561 | None:intergenic | 35.0% | |
| GAATTGATTATGGGTCAACT+GGG | + | chr5_1:6232772-6232791 | Msa0713790:CDS | 35.0% | |
| AATTGATTATGGGTCAACTG+GGG | + | chr5_1:6232773-6232792 | Msa0713790:CDS | 35.0% | |
| GGTCCAATACTTGATGAAAA+TGG | + | chr5_1:6233246-6233265 | Msa0713790:CDS | 35.0% | |
| ! | CGTCCATTTTCATCAAGTAT+TGG | - | chr5_1:6233252-6233271 | None:intergenic | 35.0% |
| ! | TCTGTAATGCGTTTTCCATT+AGG | - | chr5_1:6233429-6233448 | None:intergenic | 35.0% |
| ATGGAAAACGCATTACAGAA+TGG | + | chr5_1:6233430-6233449 | Msa0713790:CDS | 35.0% | |
| CATAATGCAACTTTCCACAA+TGG | + | chr5_1:6233453-6233472 | Msa0713790:CDS | 35.0% | |
| !!! | AATGGTGTTGGTTTTGAGAA+TGG | + | chr5_1:6233471-6233490 | Msa0713790:CDS | 35.0% |
| AACGTCTAAGTCGAATGAAT+GGG | + | chr5_1:6233541-6233560 | Msa0713790:CDS | 35.0% | |
| AAATATTGCCACTGTACTCT+GGG | + | chr5_1:6233801-6233820 | Msa0713790:intron | 35.0% | |
| ! | TCAGTTGATGCATGTTTCTT+TGG | + | chr5_1:6233846-6233865 | Msa0713790:intron | 35.0% |
| ! | ATCTTCCATTTTATCAGGGA+GGG | + | chr5_1:6233887-6233906 | Msa0713790:intron | 35.0% |
| ATTGTTTACAAGAGATGGGA+TGG | + | chr5_1:6233963-6233982 | Msa0713790:CDS | 35.0% | |
| TTGTTTACAAGAGATGGGAT+GGG | + | chr5_1:6233964-6233983 | Msa0713790:CDS | 35.0% | |
| !! | GCTTTTAAGAACAGTTCAGT+TGG | + | chr5_1:6234131-6234150 | Msa0713790:intron | 35.0% |
| AGAGTAAAATCACATGTACC+AGG | - | chr5_1:6234174-6234193 | None:intergenic | 35.0% | |
| TACATCCTTACAGATAACTC+TGG | - | chr5_1:6234205-6234224 | None:intergenic | 35.0% | |
| AAGGATGTAAATATGCGAGT+TGG | + | chr5_1:6234216-6234235 | Msa0713790:intron | 35.0% | |
| GTTTCTTGAAAGGGAAAACA+TGG | - | chr5_1:6234267-6234286 | None:intergenic | 35.0% | |
| TAGCATGCATGTACTCTATA+AGG | - | chr5_1:6234351-6234370 | None:intergenic | 35.0% | |
| TGTGGGAAATAAAACATCGT+AGG | - | chr5_1:6234444-6234463 | None:intergenic | 35.0% | |
| TGTCTACATCAGATTGTTCA+TGG | + | chr5_1:6234487-6234506 | Msa0713790:intron | 35.0% | |
| ! | GCAGAGAAAGAAGATTTTTC+TGG | + | chr5_1:6234556-6234575 | Msa0713790:CDS | 35.0% |
| CAAACAACTTATTCAGCCTT+TGG | + | chr5_1:6234582-6234601 | Msa0713790:CDS | 35.0% | |
| TTTATAGCTGCTACAAACGT+TGG | + | chr5_1:6234747-6234766 | Msa0713790:intron | 35.0% | |
| GTTGGATAATTTCGTTGTTG+TGG | + | chr5_1:6234765-6234784 | Msa0713790:CDS | 35.0% | |
| GAAGGTCAAATAATTGCATG+TGG | + | chr5_1:6234793-6234812 | Msa0713790:CDS | 35.0% | |
| GAAGCTGATTAATATCGTTC+TGG | - | chr5_1:6235034-6235053 | None:intergenic | 35.0% | |
| !!! | TATTTTTCAGGCTTCAGCTT+TGG | + | chr5_1:6235297-6235316 | Msa0713790:intron | 35.0% |
| AAGCTTCTACCAAATAAGAG+TGG | + | chr5_1:6235768-6235787 | Msa0713790:CDS | 35.0% | |
| ! | ACTATTTTCCAGTTACAAGG+GGG | + | chr5_1:6235829-6235848 | Msa0713790:three_prime_UTR | 35.0% |
| TTCGAGCTACAAGATTGTTA+CGG | - | chr5_1:6235909-6235928 | None:intergenic | 35.0% | |
| CATGACTAAGGTTTGAATTG+TGG | - | chr5_1:6236024-6236043 | None:intergenic | 35.0% | |
| ACCATGTTACTGCGTTTACA+GGG | + | chr5_1:6232402-6232421 | Msa0713790:five_prime_UTR | 40.0% | |
| GTTAGTGTCAGTGTTACAAG+TGG | + | chr5_1:6232590-6232609 | Msa0713790:CDS | 40.0% | |
| TGGTCGGTGGAATTGATTAT+GGG | + | chr5_1:6232763-6232782 | Msa0713790:CDS | 40.0% | |
| GGAATTGATTATGGGTCAAC+TGG | + | chr5_1:6232771-6232790 | Msa0713790:CDS | 40.0% | |
| ATTCAATACTTCACCAGAGC+TGG | - | chr5_1:6232880-6232899 | None:intergenic | 40.0% | |
| AACATGTCTGCTTCTTCAAG+AGG | - | chr5_1:6233291-6233310 | None:intergenic | 40.0% | |
| CAGACATGTTAATTCGCAAG+CGG | + | chr5_1:6233301-6233320 | Msa0713790:CDS | 40.0% | |
| AGACATGTTAATTCGCAAGC+GGG | + | chr5_1:6233302-6233321 | Msa0713790:CDS | 40.0% | |
| !! | AGCTGCTATTTCACTTTGCT+CGG | - | chr5_1:6233328-6233347 | None:intergenic | 40.0% |
| AGCAGCTAACTATGTGAAAG+CGG | + | chr5_1:6233341-6233360 | Msa0713790:CDS | 40.0% | |
| TAACTATGTGAAAGCGGTTG+AGG | + | chr5_1:6233347-6233366 | Msa0713790:CDS | 40.0% | |
| ! | GTAATGCGTTTTCCATTAGG+TGG | - | chr5_1:6233426-6233445 | None:intergenic | 40.0% |
| TCTCAAAACCAACACCATTG+TGG | - | chr5_1:6233470-6233489 | None:intergenic | 40.0% | |
| !!! | GTTGGTTTTGAGAATGGAGA+TGG | + | chr5_1:6233477-6233496 | Msa0713790:CDS | 40.0% |
| TTTGAGAATGGAGATGGCTT+AGG | + | chr5_1:6233483-6233502 | Msa0713790:CDS | 40.0% | |
| TTGAGAATGGAGATGGCTTA+GGG | + | chr5_1:6233484-6233503 | Msa0713790:CDS | 40.0% | |
| GAACGTCTAAGTCGAATGAA+TGG | + | chr5_1:6233540-6233559 | Msa0713790:CDS | 40.0% | |
| ! | AATTTTCTTGTCAAGTGCCC+TGG | + | chr5_1:6233625-6233644 | Msa0713790:intron | 40.0% |
| GACTTAAATAAGCACAGCCA+GGG | - | chr5_1:6233645-6233664 | None:intergenic | 40.0% | |
| AGACTTAAATAAGCACAGCC+AGG | - | chr5_1:6233646-6233665 | None:intergenic | 40.0% | |
| CAGCAAACACCACCTATTAT+TGG | - | chr5_1:6233724-6233743 | None:intergenic | 40.0% | |
| CAAATATTGCCACTGTACTC+TGG | + | chr5_1:6233800-6233819 | Msa0713790:intron | 40.0% | |
| CTCCCTGATAAAATGGAAGA+TGG | - | chr5_1:6233888-6233907 | None:intergenic | 40.0% | |
| ! | CATCTTCCATTTTATCAGGG+AGG | + | chr5_1:6233886-6233905 | Msa0713790:intron | 40.0% |
| ! | TCTTCCATTTTATCAGGGAG+GGG | + | chr5_1:6233888-6233907 | Msa0713790:intron | 40.0% |
| GGTTCAAAGAGTTCACTTGT+TGG | + | chr5_1:6233909-6233928 | Msa0713790:CDS | 40.0% | |
| ! | CAAAGAGTTCACTTGTTGGA+TGG | + | chr5_1:6233913-6233932 | Msa0713790:CDS | 40.0% |
| TTGTTGGATGGCACTATTAG+TGG | + | chr5_1:6233925-6233944 | Msa0713790:CDS | 40.0% | |
| TGTACCAGGAAAAACCAACA+AGG | - | chr5_1:6234160-6234179 | None:intergenic | 40.0% | |
| GAGATCCAGAGTTATCTGTA+AGG | + | chr5_1:6234197-6234216 | Msa0713790:intron | 40.0% | |
| AACATGGGAATGCTCACAAA+TGG | - | chr5_1:6234251-6234270 | None:intergenic | 40.0% | |
| ! | TTTTGCAGTGACCTTTACGA+AGG | + | chr5_1:6234523-6234542 | Msa0713790:intron | 40.0% |
| ACAACTTATTCAGCCTTTGG+AGG | + | chr5_1:6234585-6234604 | Msa0713790:CDS | 40.0% | |
| TTACATAGCTTACATAGCCG+TGG | + | chr5_1:6234685-6234704 | Msa0713790:intron | 40.0% | |
| TTCGTTGTTGTGGAAAGAGA+AGG | + | chr5_1:6234775-6234794 | Msa0713790:CDS | 40.0% | |
| GGTCAAATAATTGCATGTGG+TGG | + | chr5_1:6234796-6234815 | Msa0713790:CDS | 40.0% | |
| GCATGCATGATTACATGCAA+GGG | - | chr5_1:6235361-6235380 | None:intergenic | 40.0% | |
| TTACAACACGTACAGCAGAT+TGG | + | chr5_1:6235472-6235491 | Msa0713790:CDS | 40.0% | |
| ! | TCCCCTAATCCATGTCATTT+AGG | + | chr5_1:6235504-6235523 | Msa0713790:intron | 40.0% |
| !! | GCCTAAATGACATGGATTAG+GGG | - | chr5_1:6235508-6235527 | None:intergenic | 40.0% |
| ! | GGCCTAAATGACATGGATTA+GGG | - | chr5_1:6235509-6235528 | None:intergenic | 40.0% |
| AGGCCTAAATGACATGGATT+AGG | - | chr5_1:6235510-6235529 | None:intergenic | 40.0% | |
| TGGATAAGGCCTAAATGACA+TGG | - | chr5_1:6235516-6235535 | None:intergenic | 40.0% | |
| ATGATTCCCAACTTCTTGAC+AGG | + | chr5_1:6235646-6235665 | Msa0713790:intron | 40.0% | |
| CACAAACCTGTCAAGAAGTT+GGG | - | chr5_1:6235655-6235674 | None:intergenic | 40.0% | |
| TCACAAACCTGTCAAGAAGT+TGG | - | chr5_1:6235656-6235675 | None:intergenic | 40.0% | |
| AACTTCTTGACAGGTTTGTG+AGG | + | chr5_1:6235655-6235674 | Msa0713790:intron | 40.0% | |
| AAGAGTGGAATTACTGTTGG+TGG | + | chr5_1:6235783-6235802 | Msa0713790:CDS | 40.0% | |
| ! | GTAAGTGTGATTGGAAGCAT+GGG | + | chr5_1:6235851-6235870 | Msa0713790:three_prime_UTR | 40.0% |
| TCGAGCTACAAGATTGTTAC+GGG | - | chr5_1:6235908-6235927 | None:intergenic | 40.0% | |
| TTGTAGCTCGAATCTGTGTT+TGG | + | chr5_1:6235917-6235936 | Msa0713790:three_prime_UTR | 40.0% | |
| GACCATGTTACTGCGTTTAC+AGG | + | chr5_1:6232401-6232420 | Msa0713790:five_prime_UTR | 45.0% | |
| TCCCTGTAAACGCAGTAACA+TGG | - | chr5_1:6232406-6232425 | None:intergenic | 45.0% | |
| GGAGCAAGGCTAAGTATGTT+GGG | + | chr5_1:6232423-6232442 | Msa0713790:five_prime_UTR | 45.0% | |
| TGGTAACTTTCTTGCAGCCA+AGG | + | chr5_1:6232610-6232629 | Msa0713790:CDS | 45.0% | |
| ! | TTTTTGACAGAGAAGAGGGG+TGG | + | chr5_1:6232743-6232762 | Msa0713790:intron | 45.0% |
| GTGGTCGGTGGAATTGATTA+TGG | + | chr5_1:6232762-6232781 | Msa0713790:CDS | 45.0% | |
| TTCTTTCTCCAGCACCTATG+AGG | + | chr5_1:6233167-6233186 | Msa0713790:intron | 45.0% | |
| ACAAGCTGTTGCAACCTCAT+AGG | - | chr5_1:6233184-6233203 | None:intergenic | 45.0% | |
| CAAGAGGCAAGAAACGAATC+AGG | - | chr5_1:6233275-6233294 | None:intergenic | 45.0% | |
| GCAGTCAAATCTCCACCTAA+TGG | + | chr5_1:6233411-6233430 | Msa0713790:CDS | 45.0% | |
| GCAACTTTCCACAATGGTGT+TGG | + | chr5_1:6233459-6233478 | Msa0713790:CDS | 45.0% | |
| GAATGGGTACCTGTCAGAAT+TGG | + | chr5_1:6233557-6233576 | Msa0713790:CDS | 45.0% | |
| !! | TGCTGCAGCTTTTGTTTGCA+GGG | + | chr5_1:6233581-6233600 | Msa0713790:CDS | 45.0% |
| TGAACCCCTCCCTGATAAAA+TGG | - | chr5_1:6233895-6233914 | None:intergenic | 45.0% | |
| AAGAGATGGGATGGGAACAA+TGG | + | chr5_1:6233972-6233991 | Msa0713790:CDS | 45.0% | |
| AGTTCAGTTGGCATCCTTGT+TGG | + | chr5_1:6234143-6234162 | Msa0713790:intron | 45.0% | |
| !!! | GCATCCTTGTTGGTTTTTCC+TGG | + | chr5_1:6234153-6234172 | Msa0713790:intron | 45.0% |
| !!! | CTTTTCGAGTGCCTTCGTAA+AGG | - | chr5_1:6234537-6234556 | None:intergenic | 45.0% |
| ! | CATGTGGCATACTGGTTAAG+CGG | + | chr5_1:6234608-6234627 | Msa0713790:CDS | 45.0% |
| TCTCCTCAGGGTAAGGAAAA+AGG | - | chr5_1:6234822-6234841 | None:intergenic | 45.0% | |
| GGCATGCATGATTACATGCA+AGG | - | chr5_1:6235362-6235381 | None:intergenic | 45.0% | |
| GAGAAGAAAGCAGCATCTCT+TGG | + | chr5_1:6235429-6235448 | Msa0713790:CDS | 45.0% | |
| CTGCTGTACGTGTTGTAAGT+AGG | - | chr5_1:6235470-6235489 | None:intergenic | 45.0% | |
| TACAAGGGGGTAAGTGTGAT+TGG | + | chr5_1:6235842-6235861 | Msa0713790:three_prime_UTR | 45.0% | |
| GGTAAGTGTGATTGGAAGCA+TGG | + | chr5_1:6235850-6235869 | Msa0713790:three_prime_UTR | 45.0% | |
| TCGAATCTGTGTTTGGTACC+AGG | + | chr5_1:6235924-6235943 | Msa0713790:three_prime_UTR | 45.0% | |
| AATGCTACATGTCGAAGACC+TGG | - | chr5_1:6235945-6235964 | None:intergenic | 45.0% | |
| TTGAATTGTGGGCAGGACAA+GGG | - | chr5_1:6236012-6236031 | None:intergenic | 45.0% | |
| TTTGAATTGTGGGCAGGACA+AGG | - | chr5_1:6236013-6236032 | None:intergenic | 45.0% | |
| CTAAGGTTTGAATTGTGGGC+AGG | - | chr5_1:6236019-6236038 | None:intergenic | 45.0% | |
| !! | AAATAATCATATTAATATTA+AGG | - | chr5_1:6233146-6233165 | None:intergenic | 5.0% |
| TACTGCGTTTACAGGGAGCA+AGG | + | chr5_1:6232409-6232428 | Msa0713790:five_prime_UTR | 50.0% | |
| GGGAGCAAGGCTAAGTATGT+TGG | + | chr5_1:6232422-6232441 | Msa0713790:five_prime_UTR | 50.0% | |
| ATGCGTGAGAGACTTGATGG+TGG | + | chr5_1:6232822-6232841 | Msa0713790:CDS | 50.0% | |
| TGTTGCAACCTCATAGGTGC+TGG | - | chr5_1:6233178-6233197 | None:intergenic | 50.0% | |
| ACAGCTTGTGCCTTGGCAAT+TGG | + | chr5_1:6233195-6233214 | Msa0713790:CDS | 50.0% | |
| CAGCTTGTGCCTTGGCAATT+GGG | + | chr5_1:6233196-6233215 | Msa0713790:CDS | 50.0% | |
| AGCTTGTGCCTTGGCAATTG+GGG | + | chr5_1:6233197-6233216 | Msa0713790:CDS | 50.0% | |
| GTGAAAGCGGTTGAGGAAGA+AGG | + | chr5_1:6233354-6233373 | Msa0713790:CDS | 50.0% | |
| ! | AGCGAGCAAGGCTTTGCTAT+TGG | + | chr5_1:6233510-6233529 | Msa0713790:CDS | 50.0% |
| !! | GAGCAAGGCTTTGCTATTGG+AGG | + | chr5_1:6233513-6233532 | Msa0713790:CDS | 50.0% |
| !! | CTGCTGCAGCTTTTGTTTGC+AGG | + | chr5_1:6233580-6233599 | Msa0713790:CDS | 50.0% |
| TATTGCCACTGTACTCTGGG+TGG | + | chr5_1:6233804-6233823 | Msa0713790:intron | 50.0% | |
| AGATGGGATGGGAACAATGG+TGG | + | chr5_1:6233975-6233994 | Msa0713790:CDS | 50.0% | |
| ! | ATTCAGCCTTTGGAGGCATG+TGG | + | chr5_1:6234592-6234611 | Msa0713790:CDS | 50.0% |
| AGTATGCCACATGCCTCCAA+AGG | - | chr5_1:6234601-6234620 | None:intergenic | 50.0% | |
| ! | TTTGGAGGCATGTGGCATAC+TGG | + | chr5_1:6234600-6234619 | Msa0713790:CDS | 50.0% |
| GGTTAAGCGGTCTGATGAAG+AGG | + | chr5_1:6234621-6234640 | Msa0713790:CDS | 50.0% | |
| ! | TGGCCTTTTTCCTTACCCTG+AGG | + | chr5_1:6234816-6234835 | Msa0713790:CDS | 50.0% |
| CACACTTACCCCCTTGTAAC+TGG | - | chr5_1:6235840-6235859 | None:intergenic | 50.0% | |
| AACGCTGCAATGTGTGCAGC+AGG | + | chr5_1:6232476-6232495 | Msa0713790:exon | 55.0% | |
| TGACAGAGAAGAGGGGTGGT+CGG | + | chr5_1:6232747-6232766 | Msa0713790:intron | 55.0% | |
| CGCATGCGTGAGAGACTTGA+TGG | + | chr5_1:6232819-6232838 | Msa0713790:CDS | 55.0% | |
| AGAGCTGGAGTAGCCCAAGT+TGG | - | chr5_1:6232865-6232884 | None:intergenic | 55.0% | |
| AACTTGGGCTACTCCAGCTC+TGG | + | chr5_1:6232864-6232883 | Msa0713790:CDS | 55.0% | |
| GGTTGCAACAGCTTGTGCCT+TGG | + | chr5_1:6233188-6233207 | Msa0713790:CDS | 55.0% | |
| TTGTGCCTTGGCAATTGGGG+CGG | + | chr5_1:6233200-6233219 | Msa0713790:CDS | 55.0% | |
| CTGCAGCAGCCAATTCTGAC+AGG | - | chr5_1:6233569-6233588 | None:intergenic | 55.0% | |
| CCAAACCACCCAGAGTACAG+TGG | - | chr5_1:6233812-6233831 | None:intergenic | 55.0% | |
| CCACTGTACTCTGGGTGGTT+TGG | + | chr5_1:6233809-6233828 | Msa0713790:intron | 55.0% | |
| GGATGGGAACAATGGTGGCT+AGG | + | chr5_1:6233980-6233999 | Msa0713790:CDS | 55.0% | |
| GCACACTTCTCCTCAGGGTA+AGG | - | chr5_1:6234829-6234848 | None:intergenic | 55.0% | |
| CCTCTGCACACTTCTCCTCA+GGG | - | chr5_1:6234834-6234853 | None:intergenic | 55.0% | |
| ACCTCTGCACACTTCTCCTC+AGG | - | chr5_1:6234835-6234854 | None:intergenic | 55.0% | |
| GCAGTATCTCCTGATTGCCG+TGG | + | chr5_1:6234865-6234884 | Msa0713790:CDS | 55.0% | |
| GCAATTTGTCTCCCTGCCCT+TGG | - | chr5_1:6234891-6234910 | None:intergenic | 55.0% | |
| GGGCAGGGAGACAAATTGCT+TGG | + | chr5_1:6234892-6234911 | Msa0713790:CDS | 55.0% | |
| CTTGACAGGTTTGTGAGGCG+TGG | + | chr5_1:6235660-6235679 | Msa0713790:intron | 55.0% | |
| GCTGCAATGTGTGCAGCAGG+AGG | + | chr5_1:6232479-6232498 | Msa0713790:exon | 60.0% | |
| CTTGTCCGCCCCAATTGCCA+AGG | - | chr5_1:6233208-6233227 | None:intergenic | 60.0% | |
| ! | GGCTTAGGGACTAGCGAGCA+AGG | + | chr5_1:6233498-6233517 | Msa0713790:CDS | 60.0% |
| ! | CCCTGAGGAGAAGTGTGCAG+AGG | + | chr5_1:6234831-6234850 | Msa0713790:CDS | 60.0% |
| TCTCCTGATTGCCGTGGCCA+AGG | + | chr5_1:6234871-6234890 | Msa0713790:CDS | 60.0% | |
| CTCCTGATTGCCGTGGCCAA+GGG | + | chr5_1:6234872-6234891 | Msa0713790:CDS | 60.0% | |
| CAGAGAAGAGGGGTGGTCGG+TGG | + | chr5_1:6232750-6232769 | Msa0713790:intron | 65.0% | |
| TGCCCTTGGCCACGGCAATC+AGG | - | chr5_1:6234877-6234896 | None:intergenic | 65.0% | |
| TGATTGCCGTGGCCAAGGGC+AGG | + | chr5_1:6234876-6234895 | Msa0713790:CDS | 65.0% | |
| GATTGCCGTGGCCAAGGGCA+GGG | + | chr5_1:6234877-6234896 | Msa0713790:CDS | 65.0% | |
| TGTCTCCCTGCCCTTGGCCA+CGG | - | chr5_1:6234885-6234904 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 6232378 | 6236043 | 6232378 | ID=Msa0713790;Name=Msa0713790 |
| chr5_1 | mRNA | 6232378 | 6236043 | 6232378 | ID=Msa0713790-mRNA-1;Parent=Msa0713790;Name=Msa0713790-mRNA-1;_AED=0.07;_eAED=0.07;_QI=107|1|1|1|1|1|8|216|441 |
| chr5_1 | exon | 6232378 | 6232631 | 6232378 | ID=Msa0713790-mRNA-1:exon:2629;Parent=Msa0713790-mRNA-1 |
| chr5_1 | exon | 6232753 | 6232904 | 6232753 | ID=Msa0713790-mRNA-1:exon:2630;Parent=Msa0713790-mRNA-1 |
| chr5_1 | exon | 6233179 | 6233602 | 6233179 | ID=Msa0713790-mRNA-1:exon:2631;Parent=Msa0713790-mRNA-1 |
| chr5_1 | exon | 6233904 | 6234001 | 6233904 | ID=Msa0713790-mRNA-1:exon:2632;Parent=Msa0713790-mRNA-1 |
| chr5_1 | exon | 6234531 | 6234642 | 6234531 | ID=Msa0713790-mRNA-1:exon:2633;Parent=Msa0713790-mRNA-1 |
| chr5_1 | exon | 6234754 | 6234913 | 6234754 | ID=Msa0713790-mRNA-1:exon:2634;Parent=Msa0713790-mRNA-1 |
| chr5_1 | exon | 6235421 | 6235493 | 6235421 | ID=Msa0713790-mRNA-1:exon:2635;Parent=Msa0713790-mRNA-1 |
| chr5_1 | exon | 6235668 | 6236043 | 6235668 | ID=Msa0713790-mRNA-1:exon:2636;Parent=Msa0713790-mRNA-1 |
| chr5_1 | five_prime_UTR | 6232378 | 6232484 | 6232378 | ID=Msa0713790-mRNA-1:five_prime_utr;Parent=Msa0713790-mRNA-1 |
| chr5_1 | CDS | 6232485 | 6232631 | 6232485 | ID=Msa0713790-mRNA-1:cds;Parent=Msa0713790-mRNA-1 |
| chr5_1 | CDS | 6232753 | 6232904 | 6232753 | ID=Msa0713790-mRNA-1:cds;Parent=Msa0713790-mRNA-1 |
| chr5_1 | CDS | 6233179 | 6233602 | 6233179 | ID=Msa0713790-mRNA-1:cds;Parent=Msa0713790-mRNA-1 |
| chr5_1 | CDS | 6233904 | 6234001 | 6233904 | ID=Msa0713790-mRNA-1:cds;Parent=Msa0713790-mRNA-1 |
| chr5_1 | CDS | 6234531 | 6234642 | 6234531 | ID=Msa0713790-mRNA-1:cds;Parent=Msa0713790-mRNA-1 |
| chr5_1 | CDS | 6234754 | 6234913 | 6234754 | ID=Msa0713790-mRNA-1:cds;Parent=Msa0713790-mRNA-1 |
| chr5_1 | CDS | 6235421 | 6235493 | 6235421 | ID=Msa0713790-mRNA-1:cds;Parent=Msa0713790-mRNA-1 |
| chr5_1 | CDS | 6235668 | 6235827 | 6235668 | ID=Msa0713790-mRNA-1:cds;Parent=Msa0713790-mRNA-1 |
| chr5_1 | three_prime_UTR | 6235828 | 6236043 | 6235828 | ID=Msa0713790-mRNA-1:three_prime_utr;Parent=Msa0713790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
