Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275600 | XP_039686258.1 | 96.834 | 379 | 12 | 0 | 1 | 379 | 1 | 379 | 0.0 | 746 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275600 | sp|F6HDM2|NNRD_VITVI | 77.684 | 354 | 76 | 2 | 23 | 374 | 1 | 353 | 0.0 | 553 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0275600 | 0.818796 | 1.625684e-52 | -8.615850e-47 |
| Msa0020930 | Msa0275600 | 0.801028 | 1.092037e-48 | -8.615850e-47 |
| Msa0031340 | Msa0275600 | 0.805914 | 1.060546e-49 | -8.615850e-47 |
| Msa0046100 | Msa0275600 | 0.825370 | 4.864488e-54 | -8.615850e-47 |
| Msa0068680 | Msa0275600 | 0.808952 | 2.405347e-50 | -8.615850e-47 |
| Msa0110970 | Msa0275600 | 0.821320 | 4.297854e-53 | -8.615850e-47 |
| Msa0140780 | Msa0275600 | 0.824339 | 8.516789e-54 | -8.615850e-47 |
| Msa0146260 | Msa0275600 | 0.804410 | 2.189265e-49 | -8.615850e-47 |
| Msa0157290 | Msa0275600 | 0.818772 | 1.646044e-52 | -8.615850e-47 |
| Msa0159930 | Msa0275600 | 0.802703 | 4.946395e-49 | -8.615850e-47 |
| Msa0184020 | Msa0275600 | 0.813827 | 2.101577e-51 | -8.615850e-47 |
| Msa0184960 | Msa0275600 | 0.812648 | 3.813775e-51 | -8.615850e-47 |
| Msa0200260 | Msa0275600 | 0.800285 | 1.548314e-48 | -8.615850e-47 |
| Msa0243100 | Msa0275600 | 0.837908 | 3.937956e-57 | -8.615850e-47 |
| Msa0275600 | Msa0287650 | 0.810934 | 9.002461e-51 | -8.615850e-47 |
| Msa0275600 | Msa0340090 | 0.802595 | 5.206624e-49 | -8.615850e-47 |
| Msa0275600 | Msa0342360 | 0.802312 | 5.955964e-49 | -8.615850e-47 |
| Msa0275600 | Msa0369850 | 0.815997 | 6.938723e-52 | -8.615850e-47 |
| Msa0275600 | Msa0373930 | 0.806654 | 7.404631e-50 | -8.615850e-47 |
| Msa0275600 | Msa0379640 | 0.800593 | 1.340288e-48 | -8.615850e-47 |
| Msa0275600 | Msa0425010 | 0.804534 | 2.063319e-49 | -8.615850e-47 |
| Msa0275600 | Msa0442670 | 0.802750 | 4.837189e-49 | -8.615850e-47 |
| Msa0275600 | Msa0474950 | 0.804720 | 1.886561e-49 | -8.615850e-47 |
| Msa0275600 | Msa0488400 | 0.821728 | 3.460887e-53 | -8.615850e-47 |
| Msa0275600 | Msa0495320 | 0.803372 | 3.597367e-49 | -8.615850e-47 |
| Msa0275600 | Msa0507680 | 0.801115 | 1.048263e-48 | -8.615850e-47 |
| Msa0275600 | Msa0509610 | 0.803326 | 3.677781e-49 | -8.615850e-47 |
| Msa0275600 | Msa0523460 | 0.811194 | 7.908183e-51 | -8.615850e-47 |
| Msa0275600 | Msa0599890 | 0.806286 | 8.856115e-50 | -8.615850e-47 |
| Msa0275600 | Msa0625530 | -0.801008 | 1.102443e-48 | -8.615850e-47 |
| Msa0275600 | Msa0713790 | 0.805758 | 1.143792e-49 | -8.615850e-47 |
| Msa0275600 | Msa0740640 | 0.810923 | 9.054645e-51 | -8.615850e-47 |
| Msa0275600 | Msa0743720 | 0.804883 | 1.744321e-49 | -8.615850e-47 |
| Msa0275600 | Msa0756030 | 0.800401 | 1.466254e-48 | -8.615850e-47 |
| Msa0275600 | Msa0837660 | 0.802142 | 6.455710e-49 | -8.615850e-47 |
| Msa0275600 | Msa0880140 | 0.816363 | 5.747138e-52 | -8.615850e-47 |
| Msa0275600 | Msa0993600 | 0.802990 | 4.316490e-49 | -8.615850e-47 |
| Msa0275600 | Msa1082500 | 0.822181 | 2.718165e-53 | -8.615850e-47 |
| Msa0275600 | Msa1203250 | 0.807845 | 4.143073e-50 | -8.615850e-47 |
| Msa0275600 | Msa1211150 | -0.800938 | 1.139640e-48 | -8.615850e-47 |
| Msa0275600 | Msa1228210 | 0.802826 | 4.665647e-49 | -8.615850e-47 |
| Msa0275600 | Msa1236100 | 0.821592 | 3.720775e-53 | -8.615850e-47 |
| Msa0275600 | Msa1242220 | 0.804814 | 1.803156e-49 | -8.615850e-47 |
| Msa0275600 | Msa1271280 | 0.814857 | 1.244058e-51 | -8.615850e-47 |
| Msa0275600 | Msa1279380 | 0.803777 | 2.965393e-49 | -8.615850e-47 |
| Msa0275600 | Msa1283860 | 0.826378 | 2.802791e-54 | -8.615850e-47 |
| Msa0275600 | Msa1322890 | 0.806315 | 8.733392e-50 | -8.615850e-47 |
| Msa0275600 | Msa1340020 | 0.814911 | 1.210162e-51 | -8.615850e-47 |
| Msa0275600 | Msa1345360 | 0.869734 | 2.480631e-66 | -8.615850e-47 |
| Msa0275600 | Msa1346370 | 0.802667 | 5.031842e-49 | -8.615850e-47 |
| Msa0275600 | Msa1374040 | 0.801584 | 8.404862e-49 | -8.615850e-47 |
| Msa0275600 | Msa1464940 | 0.803591 | 3.239791e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275600 | MtrunA17_Chr2g0287881 | 96.834 | 379 | 12 | 0 | 1 | 379 | 1 | 379 | 0.0 | 746 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275600 | AT5G19150.2 | 71.920 | 349 | 86 | 4 | 29 | 374 | 25 | 364 | 4.56e-177 | 497 |
| Msa0275600 | AT5G19150.1 | 71.920 | 349 | 86 | 4 | 29 | 374 | 25 | 364 | 4.56e-177 | 497 |
Find 112 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGAGCTTAGTACCTTTC+TGG | 0.072207 | 2_3:-7748395 | Msa0275600:five_prime_UTR |
| AATTGGTTTCAAACCTTATT+TGG | 0.090433 | 2_3:+7748743 | Msa0275610:CDS |
| CGCTTATATTCATTGACATT+TGG | 0.238912 | 2_3:+7746392 | None:intergenic |
| GGCCAAGGCGATATCCTTTC+TGG | 0.241899 | 2_3:-7745064 | Msa0275600:CDS |
| ACTTGAGCTTTCTCCAAATA+AGG | 0.250781 | 2_3:-7748756 | Msa0275600:five_prime_UTR |
| GCTTATATTCATTGACATTT+GGG | 0.266006 | 2_3:+7746393 | None:intergenic |
| TATAAAATGTGTCGAGTTAC+TGG | 0.275300 | 2_3:-7743793 | Msa0275600:three_prime_UTR |
| GTCAAAACAGTTAGCATCTA+TGG | 0.286837 | 2_3:-7745106 | Msa0275600:CDS |
| TTCATCTTCATATCTGATTT+CGG | 0.288987 | 2_3:-7748660 | Msa0275600:five_prime_UTR |
| CTCAAATCTTTGTTTGTTCA+AGG | 0.289164 | 2_3:-7743701 | Msa0275600:three_prime_UTR |
| CAAGCAAATCACCAGATAAT+TGG | 0.300290 | 2_3:-7749032 | Msa0275600:five_prime_UTR |
| GTTGATTGTGCACCCTGTTT+TGG | 0.311517 | 2_3:-7746948 | Msa0275600:CDS |
| CTTTATGTCTACTTCGATCT+AGG | 0.313756 | 2_3:+7747804 | None:intergenic |
| CTTTGGTCTGTCATAATGTA+TGG | 0.314126 | 2_3:+7749093 | None:intergenic |
| GCACATATACTCTTCGAATT+AGG | 0.315076 | 2_3:+7749196 | None:intergenic |
| TAGGTCAGGAATAGTGGTTT+TGG | 0.325123 | 2_3:+7748689 | Msa0275610:CDS |
| TCAGGAAACATAGCTGTTAT+TGG | 0.331184 | 2_3:-7747190 | Msa0275600:intron |
| CATCATACCAATTATAGTTC+TGG | 0.333386 | 2_3:-7747884 | Msa0275600:CDS |
| TAGTTTGTTGTATTTAATAA+AGG | 0.340075 | 2_3:-7743752 | Msa0275600:three_prime_UTR |
| TGACCCATCTTCTGATTTCA+AGG | 0.345670 | 2_3:+7748827 | Msa0275610:CDS |
| AACATCCCAATTGTGATAGA+TGG | 0.346293 | 2_3:-7746561 | Msa0275600:CDS |
| TCTGAGCTTAGTACCTTTCT+GGG | 0.349937 | 2_3:-7748394 | Msa0275600:five_prime_UTR |
| CAAACAAAGATTTGAGTTGA+TGG | 0.353786 | 2_3:+7743708 | None:intergenic |
| GCAGTGTTGGGATCCATTGC+TGG | 0.361523 | 2_3:-7744049 | Msa0275600:CDS |
| TTCTGTGCACACCAATTATC+TGG | 0.362548 | 2_3:+7749021 | None:intergenic |
| CTAGTCATTGGTCCAGGCCT+TGG | 0.363699 | 2_3:-7746743 | Msa0275600:CDS |
| CATACCCCATCTATCACAAT+TGG | 0.364871 | 2_3:+7746555 | None:intergenic |
| TTTGTTGTTAGTTTGTCTTA+TGG | 0.372047 | 2_3:+7749132 | None:intergenic |
| TGCAATTAGGTCAGGAATAG+TGG | 0.380299 | 2_3:+7748683 | Msa0275610:CDS |
| CTATACGATTCTTCCAAAAC+AGG | 0.387268 | 2_3:+7746935 | None:intergenic |
| TCTGTTGATATCAGTTTCAA+TGG | 0.399526 | 2_3:+7749059 | None:intergenic |
| GGTGTTACTATCCTAAGAAA+AGG | 0.417575 | 2_3:-7745775 | Msa0275600:CDS |
| TGTGAATAGGGGTTGCTGTT+TGG | 0.421326 | 2_3:-7748044 | Msa0275600:intron |
| AATCACCTTGAACTTGTTAG+TGG | 0.422168 | 2_3:-7746437 | Msa0275600:CDS |
| TTCACATTCAAATTCATCAT+AGG | 0.422511 | 2_3:+7748574 | None:intergenic |
| ATCAAGGTTCTTGCTGAAGT+TGG | 0.425502 | 2_3:-7746791 | Msa0275600:CDS |
| AGAGTAAGCACTTGCTCAGC+AGG | 0.425937 | 2_3:+7746326 | None:intergenic |
| GACGTGCACGTGTTCCCAAC+TGG | 0.429006 | 2_3:+7748471 | None:intergenic |
| AACCGATGTCTTCTGAAAAC+AGG | 0.444182 | 2_3:+7747938 | None:intergenic |
| GACTGTCTAGTCATTGGTCC+AGG | 0.449752 | 2_3:-7746749 | Msa0275600:CDS |
| GCTGAAATAGCAGCAAAGTA+TGG | 0.452837 | 2_3:+7747142 | None:intergenic |
| GTGTTGAATTGAAGAGAGTA+TGG | 0.457059 | 2_3:+7748629 | None:intergenic |
| TCATTGAATGCTTAGGGAAA+AGG | 0.460736 | 2_3:-7743955 | Msa0275600:intron |
| TATGGTGGTTAAGCAGTGAT+TGG | 0.463655 | 2_3:+7749150 | None:intergenic |
| AAGTTGGCAAATGGTTAGAA+AGG | 0.464587 | 2_3:-7746775 | Msa0275600:CDS |
| AGGTTTGACTGTCTAGTCAT+TGG | 0.469835 | 2_3:-7746755 | Msa0275600:CDS |
| GGTACTAAGCTCAGAAATTG+AGG | 0.471229 | 2_3:+7748402 | None:intergenic |
| GGTGACATCATTGAATGCTT+AGG | 0.472445 | 2_3:-7743962 | Msa0275600:CDS |
| ATATGAAGATGAATGCAATT+AGG | 0.474166 | 2_3:+7748670 | Msa0275610:CDS |
| GTGACATCATTGAATGCTTA+GGG | 0.475692 | 2_3:-7743961 | Msa0275600:CDS |
| CTAGATCGAAGTAGACATAA+AGG | 0.479089 | 2_3:-7747803 | Msa0275600:CDS |
| TGGAAGAATCGTATAGTGTC+AGG | 0.480517 | 2_3:-7746928 | Msa0275600:intron |
| TGCAAAGAATTGTATGCTAC+TGG | 0.482117 | 2_3:-7747969 | Msa0275600:CDS |
| AATGTGTCTCTTCCAAGGCC+TGG | 0.488920 | 2_3:+7746731 | None:intergenic |
| GTTAACCTGAGATATGAATC+TGG | 0.489466 | 2_3:+7744168 | None:intergenic |
| ACATCCCAATTGTGATAGAT+GGG | 0.491513 | 2_3:-7746560 | Msa0275600:CDS |
| GCAAGAATTGTGTACCTGCC+TGG | 0.497015 | 2_3:+7747780 | None:intergenic |
| AAGATGAATGCAATTAGGTC+AGG | 0.497334 | 2_3:+7748675 | Msa0275610:CDS |
| CCTAGACGCTGTGGTGGCCA+AGG | 0.497476 | 2_3:-7745079 | Msa0275600:CDS |
| TTCTTGCTGAAGTTGGCAAA+TGG | 0.497957 | 2_3:-7746784 | Msa0275600:CDS |
| CATAGCCACTAACAAGTTCA+AGG | 0.498864 | 2_3:+7746432 | None:intergenic |
| CTGGTCCAGATTCATATCTC+AGG | 0.505172 | 2_3:-7744173 | Msa0275600:intron |
| AGGTCACAAACTGCATGAAC+CGG | 0.507023 | 2_3:+7743827 | None:intergenic |
| GTTGTTAGTTTGTCTTATGG+TGG | 0.514081 | 2_3:+7749135 | None:intergenic |
| AAGAAAAGATCAACTGTCAC+TGG | 0.520063 | 2_3:-7743983 | Msa0275600:CDS |
| GATTCCTTGAAATCAGAAGA+TGG | 0.525934 | 2_3:-7748831 | Msa0275600:five_prime_UTR |
| GCAATGGATCCCAACACTGC+TGG | 0.527491 | 2_3:+7744052 | None:intergenic |
| ATTGTGTATGTTGTTGAAGA+AGG | 0.533476 | 2_3:+7743534 | None:intergenic |
| AAATCACTTGCCTTCCAGAA+AGG | 0.533730 | 2_3:+7745050 | None:intergenic |
| GTACTAAGCTCAGAAATTGA+GGG | 0.535519 | 2_3:+7748403 | None:intergenic |
| TTGGAAGATATTTGTCCTGC+CGG | 0.536420 | 2_3:-7743846 | Msa0275600:CDS |
| TGTCTACTTCGATCTAGGAC+AGG | 0.537753 | 2_3:+7747809 | None:intergenic |
| CGCCAACATATTGAAGCCGC+TGG | 0.538329 | 2_3:-7744192 | Msa0275600:CDS |
| CCTTGGCCACCACAGCGTCT+AGG | 0.541683 | 2_3:+7745079 | None:intergenic |
| AAAGACTAATTTCAGGGAGG+AGG | 0.546606 | 2_3:-7746831 | Msa0275600:intron |
| TCGAAGTAGACATAAAGGCC+AGG | 0.549602 | 2_3:-7747798 | Msa0275600:CDS |
| ATACCCCATCTATCACAATT+GGG | 0.552293 | 2_3:+7746556 | None:intergenic |
| GTGTTACTATCCTAAGAAAA+GGG | 0.553052 | 2_3:-7745774 | Msa0275600:CDS |
| TCTTCGAATTAGGCATGTCC+TGG | 0.554035 | 2_3:+7749206 | None:intergenic |
| AGTAGACATAAAGGCCAGGC+AGG | 0.554724 | 2_3:-7747794 | Msa0275600:intron |
| GACCAGCGGCTTCAATATGT+TGG | 0.558603 | 2_3:+7744190 | None:intergenic |
| GGAGGGTGTCGAGAATATAC+AGG | 0.562370 | 2_3:-7747169 | Msa0275600:CDS |
| CATCATAGCAGAACCAGCAA+TGG | 0.569174 | 2_3:+7744036 | None:intergenic |
| TTCCAGAAAGGATATCGCCT+TGG | 0.569656 | 2_3:+7745062 | None:intergenic |
| CTTATATTCATTGACATTTG+GGG | 0.570403 | 2_3:+7746394 | None:intergenic |
| AAAATTACTCTAGCCCAGAA+AGG | 0.570694 | 2_3:+7748381 | None:intergenic |
| ATTCCTTGAAATCAGAAGAT+GGG | 0.574749 | 2_3:-7748830 | Msa0275600:five_prime_UTR |
| CACAAACTGCATGAACCGGC+AGG | 0.577053 | 2_3:+7743831 | None:intergenic |
| GGAAACATAGCTGTTATTGG+AGG | 0.581792 | 2_3:-7747187 | Msa0275600:CDS |
| CTAATAAGCGATGGTGACAA+AGG | 0.586144 | 2_3:-7745742 | Msa0275600:intron |
| GAAGAAATGTGTCTCTTCCA+AGG | 0.587504 | 2_3:+7746726 | None:intergenic |
| TCAACAGCAGCAGCAAAATG+AGG | 0.591319 | 2_3:+7748779 | Msa0275610:CDS |
| TTTGGTCTGTCATAATGTAT+GGG | 0.594954 | 2_3:+7749094 | None:intergenic |
| CTGTTGAGGTTGATGCTGAG+AGG | 0.602725 | 2_3:-7747850 | Msa0275600:CDS |
| TTTCTTATCTGAGAAAGCAA+GGG | 0.603389 | 2_3:+7744000 | None:intergenic |
| AAATCTGATCTAATAAGCGA+TGG | 0.625347 | 2_3:-7745751 | Msa0275600:CDS |
| TGTTGAGGTTGATGCTGAGA+GGG | 0.627704 | 2_3:-7747849 | Msa0275600:CDS |
| TCTATCTCTTTCCCTGAACG+TGG | 0.628499 | 2_3:+7748852 | Msa0275610:CDS |
| GGTTCTCCTAGACGCTGTGG+TGG | 0.634816 | 2_3:-7745085 | Msa0275600:CDS |
| GAAACATAGCTGTTATTGGA+GGG | 0.636930 | 2_3:-7747186 | Msa0275600:CDS |
| ACAGGGTGCACAATCAACTC+AGG | 0.644569 | 2_3:+7746953 | None:intergenic |
| TGGTTCTGCTATGATGAGGA+AGG | 0.646503 | 2_3:-7744029 | Msa0275600:CDS |
| ATTCTTTGCACAATACAACA+AGG | 0.649931 | 2_3:+7747982 | None:intergenic |
| GAGATATGAATCTGGACCAG+CGG | 0.651593 | 2_3:+7744176 | None:intergenic |
| CATCCCAATTGTGATAGATG+GGG | 0.653855 | 2_3:-7746559 | Msa0275600:intron |
| TTCTTTGCACAATACAACAA+GGG | 0.653862 | 2_3:+7747983 | None:intergenic |
| TGTTCAAGGCAACATTTGTG+TGG | 0.654416 | 2_3:-7743687 | Msa0275600:three_prime_UTR |
| AAGGCGATATCCTTTCTGGA+AGG | 0.654435 | 2_3:-7745060 | Msa0275600:intron |
| TATGGTTCTCCTAGACGCTG+TGG | 0.663571 | 2_3:-7745088 | Msa0275600:CDS |
| TTGCTGGTTCTGCTATGATG+AGG | 0.663985 | 2_3:-7744033 | Msa0275600:CDS |
| GGTCATGTTAATGAAACATG+TGG | 0.675238 | 2_3:-7748023 | Msa0275600:exon |
| TATACGATTCTTCCAAAACA+GGG | 0.700328 | 2_3:+7746936 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAAAAATGAAGATA+TGG | + | chr2_3:7745002-7745021 | None:intergenic | 10.0% |
| !!! | TTCATTTTTTTTTTAATAAC+TGG | - | chr2_3:7745006-7745025 | Msa0275600:intron | 10.0% |
| !!! | AATAAATGTTTTTTTTTTAC+AGG | - | chr2_3:7749177-7749196 | Msa0275600:five_prime_UTR | 10.0% |
| !! | AAAAAATTGTTTATAATACC+TGG | + | chr2_3:7744403-7744422 | None:intergenic | 15.0% |
| !!! | TGTATTTTGTTATCAAAATT+TGG | - | chr2_3:7744498-7744517 | Msa0275600:intron | 15.0% |
| !! | AAAATTTGGTTATAAGAATT+AGG | - | chr2_3:7744512-7744531 | Msa0275600:intron | 15.0% |
| !! | AAATTTGGTTATAAGAATTA+GGG | - | chr2_3:7744513-7744532 | Msa0275600:intron | 15.0% |
| !!! | TTTTTTATTTTGTGAATTCA+TGG | - | chr2_3:7744571-7744590 | Msa0275600:intron | 15.0% |
| !!! | AATTCTAATATCAATTTTCA+TGG | + | chr2_3:7744651-7744670 | None:intergenic | 15.0% |
| !! | ATGAAAATTGATATTAGAAT+TGG | - | chr2_3:7744650-7744669 | Msa0275600:intron | 15.0% |
| !! | TGAAAATTGATATTAGAATT+GGG | - | chr2_3:7744651-7744670 | Msa0275600:intron | 15.0% |
| !! | GGTGTTAATTATATATTAAA+AGG | - | chr2_3:7745123-7745142 | Msa0275600:intron | 15.0% |
| !! | TCAATCTTATGAAATATAAT+AGG | - | chr2_3:7746628-7746647 | Msa0275600:intron | 15.0% |
| !!! | CAAACTTAAAATTACTTTTT+TGG | - | chr2_3:7747402-7747421 | Msa0275600:intron | 15.0% |
| !!! | AAAATCAGAAGAAATTTTAA+AGG | - | chr2_3:7747950-7747969 | Msa0275600:CDS | 15.0% |
| !! | GAACAAAAATATAATTATCA+AGG | + | chr2_3:7748667-7748686 | Msa0275610:CDS | 15.0% |
| !!! | AATACAACAAACTATTTTTT+AGG | + | chr2_3:7748994-7749013 | None:intergenic | 15.0% |
| !!! | TAGTTTGTTGTATTTAATAA+AGG | - | chr2_3:7749000-7749019 | Msa0275600:five_prime_UTR | 15.0% |
| !!! | TAGAGTAATTTTTATTTTCC+AGG | - | chr2_3:7744382-7744401 | Msa0275600:intron | 20.0% |
| !! | AAACACAACATTTGAATAAA+GGG | + | chr2_3:7744442-7744461 | None:intergenic | 20.0% |
| !! | AATTTGGTTATAAGAATTAG+GGG | - | chr2_3:7744514-7744533 | Msa0275600:intron | 20.0% |
| !! | GAAAATTGATATTAGAATTG+GGG | - | chr2_3:7744652-7744671 | Msa0275600:intron | 20.0% |
| !! | AAAATTGATATTAGAATTGG+GGG | - | chr2_3:7744653-7744672 | Msa0275600:intron | 20.0% |
| !!! | TTTTTAAGGTATTCATGTTT+GGG | - | chr2_3:7744683-7744702 | Msa0275600:intron | 20.0% |
| !! | GAAATGTTTAGAAAACAAAA+AGG | + | chr2_3:7745416-7745435 | None:intergenic | 20.0% |
| !! | TTTCAATTATGTTTCAAATC+AGG | - | chr2_3:7745544-7745563 | Msa0275600:intron | 20.0% |
| !!! | ACAAGTACTAACAATTTTTA+AGG | + | chr2_3:7745635-7745654 | None:intergenic | 20.0% |
| !! | TTTAATGAAAGACTAATTTC+AGG | - | chr2_3:7745914-7745933 | Msa0275600:intron | 20.0% |
| !! | TTAATGAAAGACTAATTTCA+GGG | - | chr2_3:7745915-7745934 | Msa0275600:intron | 20.0% |
| !! | TTTATTATACACTTGGAAAT+AGG | - | chr2_3:7746097-7746116 | Msa0275600:intron | 20.0% |
| !!! | TTTTATGATTTACACAAGTT+AGG | + | chr2_3:7746556-7746575 | None:intergenic | 20.0% |
| !! | TATGAAATATAATAGGCTAA+TGG | - | chr2_3:7746635-7746654 | Msa0275600:intron | 20.0% |
| !!! | TTCAATTTTATGTTCAAGTT+TGG | - | chr2_3:7746752-7746771 | Msa0275600:CDS | 20.0% |
| !!! | GTTCTTTTTCTCAATATAAA+TGG | + | chr2_3:7747281-7747300 | None:intergenic | 20.0% |
| !!! | TTGGTTGATGTTTAAATAAA+TGG | - | chr2_3:7747421-7747440 | Msa0275600:intron | 20.0% |
| !!! | TGGTTGATGTTTAAATAAAT+GGG | - | chr2_3:7747422-7747441 | Msa0275600:intron | 20.0% |
| !! | ATAAAGTAAGAAACTAACAA+GGG | + | chr2_3:7747891-7747910 | None:intergenic | 20.0% |
| !!! | TGTTACTTTAAAACAACTAT+TGG | + | chr2_3:7748104-7748123 | None:intergenic | 20.0% |
| !!! | TTTAAGGTCATTAAATTTAG+TGG | - | chr2_3:7748270-7748289 | Msa0275600:intron | 20.0% |
| !! | CAACTAATGTATTTCATTTA+AGG | - | chr2_3:7748304-7748323 | Msa0275600:intron | 20.0% |
| !! | GTCAAAAATTGTTTCATTTA+AGG | + | chr2_3:7748361-7748380 | None:intergenic | 20.0% |
| !!! | TAACGTTTTCTATTTTTCTT+AGG | - | chr2_3:7748603-7748622 | Msa0275600:five_prime_UTR | 20.0% |
| !!! | ATTTTATTGTCTTCCTAAAT+TGG | + | chr2_3:7749136-7749155 | None:intergenic | 20.0% |
| !!! | TTTGTTGTTAGTTTGTCTTA+TGG | + | chr2_3:7743623-7743642 | None:intergenic | 25.0% |
| !!! | ATTTTTTATTAACCACGTTC+AGG | - | chr2_3:7743888-7743907 | Msa0275600:intron | 25.0% |
| !!! | TTTTTTATTAACCACGTTCA+GGG | - | chr2_3:7743889-7743908 | Msa0275600:intron | 25.0% |
| !! | AATTGGTTTCAAACCTTATT+TGG | + | chr2_3:7744012-7744031 | None:intergenic | 25.0% |
| ! | ATATGAAGATGAATGCAATT+AGG | + | chr2_3:7744085-7744104 | None:intergenic | 25.0% |
| ! | TTCATCTTCATATCTGATTT+CGG | - | chr2_3:7744092-7744111 | Msa0275600:intron | 25.0% |
| ! | TTCACATTCAAATTCATCAT+AGG | + | chr2_3:7744181-7744200 | None:intergenic | 25.0% |
| !!! | TTGAGTTGAATTTTGATACT+AGG | - | chr2_3:7744201-7744220 | Msa0275600:CDS | 25.0% |
| !!! | TGAGTTGAATTTTGATACTA+GGG | - | chr2_3:7744202-7744221 | Msa0275600:CDS | 25.0% |
| ! | CAAACACAACATTTGAATAA+AGG | + | chr2_3:7744443-7744462 | None:intergenic | 25.0% |
| ! | ATAAAGACTCAATTCTTTAG+AGG | + | chr2_3:7744616-7744635 | None:intergenic | 25.0% |
| ! | AAATTGATATTAGAATTGGG+GGG | - | chr2_3:7744654-7744673 | Msa0275600:intron | 25.0% |
| !!! | GTTTTTAAGGTATTCATGTT+TGG | - | chr2_3:7744682-7744701 | Msa0275600:intron | 25.0% |
| !! | CATTTTTCCAGAACTATAAT+TGG | + | chr2_3:7744878-7744897 | None:intergenic | 25.0% |
| ! | AGATTTGCCTCTTAAAAAAA+TGG | + | chr2_3:7745073-7745092 | None:intergenic | 25.0% |
| ! | AAATACATATAAGCTATGCT+AGG | + | chr2_3:7745475-7745494 | None:intergenic | 25.0% |
| !! | ATCTTTTGTACAGAATACAT+GGG | + | chr2_3:7745752-7745771 | None:intergenic | 25.0% |
| ! | CATTAAAAACAACATTCACT+AGG | + | chr2_3:7745901-7745920 | None:intergenic | 25.0% |
| ! | CAAGAAAAACATATCAATCA+AGG | - | chr2_3:7745945-7745964 | Msa0275600:intron | 25.0% |
| ! | CTTATATTCATTGACATTTG+GGG | + | chr2_3:7746361-7746380 | None:intergenic | 25.0% |
| ! | GCTTATATTCATTGACATTT+GGG | + | chr2_3:7746362-7746381 | None:intergenic | 25.0% |
| ! | CAAATAGAACAACTAAAATG+AGG | + | chr2_3:7746468-7746487 | None:intergenic | 25.0% |
| ! | GTTTAAATCACTATCCATAT+AGG | + | chr2_3:7746588-7746607 | None:intergenic | 25.0% |
| !! | AGTCAATTGACAATTTTCAA+GGG | - | chr2_3:7746698-7746717 | Msa0275600:intron | 25.0% |
| ! | AGCATGATAAATTGTTTGAT+TGG | - | chr2_3:7746862-7746881 | Msa0275600:intron | 25.0% |
| ! | TACAAAACTTTAATGACAGT+TGG | - | chr2_3:7746931-7746950 | Msa0275600:CDS | 25.0% |
| ! | ACAAAACTTTAATGACAGTT+GGG | - | chr2_3:7746932-7746951 | Msa0275600:CDS | 25.0% |
| ! | CTTCGATAAATATAAAATCC+CGG | - | chr2_3:7747038-7747057 | Msa0275600:intron | 25.0% |
| ! | AAATAAGAAACTAGACAAGA+AGG | + | chr2_3:7747068-7747087 | None:intergenic | 25.0% |
| !!! | TCTTGTCTAGTTTCTTATTT+TGG | - | chr2_3:7747068-7747087 | Msa0275600:intron | 25.0% |
| !!! | CTTGTCTAGTTTCTTATTTT+GGG | - | chr2_3:7747069-7747088 | Msa0275600:intron | 25.0% |
| ! | ATGAACATTACATTCTTGAT+TGG | + | chr2_3:7747161-7747180 | None:intergenic | 25.0% |
| ! | CTTGTATATAACATGTCATA+CGG | + | chr2_3:7747213-7747232 | None:intergenic | 25.0% |
| !! | AACAAGATTTTGTGTAAAAG+AGG | + | chr2_3:7747371-7747390 | None:intergenic | 25.0% |
| !!! | TAGAGACTGTTTTAAACATT+TGG | - | chr2_3:7747543-7747562 | Msa0275600:intron | 25.0% |
| ! | GATAAAGTAAGAAACTAACA+AGG | + | chr2_3:7747892-7747911 | None:intergenic | 25.0% |
| !! | CTCTTTCTATTTTCTTTTCA+GGG | + | chr2_3:7747982-7748001 | None:intergenic | 25.0% |
| !! | TCTCTTTCTATTTTCTTTTC+AGG | + | chr2_3:7747983-7748002 | None:intergenic | 25.0% |
| ! | CCTTAAATGAACAGTATTAT+AGG | + | chr2_3:7748257-7748276 | None:intergenic | 25.0% |
| ! | CCTATAATACTGTTCATTTA+AGG | - | chr2_3:7748254-7748273 | Msa0275600:intron | 25.0% |
| ! | ACAGGGAGATAAATAAAAAT+TGG | + | chr2_3:7748383-7748402 | None:intergenic | 25.0% |
| !! | ACACATTTTATACAAGTGTT+TGG | + | chr2_3:7748951-7748970 | None:intergenic | 25.0% |
| !!! | TGTCGTGAATTTTTTAATGA+TGG | - | chr2_3:7749110-7749129 | Msa0275600:five_prime_UTR | 25.0% |
| !! | TTTTTAATGATGGCCAATTT+AGG | - | chr2_3:7749120-7749139 | Msa0275600:five_prime_UTR | 25.0% |
| TTTGGTCTGTCATAATGTAT+GGG | + | chr2_3:7743661-7743680 | None:intergenic | 30.0% | |
| !!! | CAATGGTTTGATTTTAGCTT+TGG | + | chr2_3:7743679-7743698 | None:intergenic | 30.0% |
| TCTGTTGATATCAGTTTCAA+TGG | + | chr2_3:7743696-7743715 | None:intergenic | 30.0% | |
| ! | TTTCTCTTTGCTTCTGTTTT+GGG | + | chr2_3:7743860-7743879 | None:intergenic | 30.0% |
| ! | TTTTCTCTTTGCTTCTGTTT+TGG | + | chr2_3:7743861-7743880 | None:intergenic | 30.0% |
| ATTCCTTGAAATCAGAAGAT+GGG | - | chr2_3:7743922-7743941 | Msa0275600:intron | 30.0% | |
| !! | GGTTATTTGAGTTTTCGAAT+TGG | + | chr2_3:7744029-7744048 | None:intergenic | 30.0% |
| ! | TCATGTTTGGGTTTATGAAT+AGG | - | chr2_3:7744543-7744562 | Msa0275600:intron | 30.0% |
| TTCTTTGCACAATACAACAA+GGG | + | chr2_3:7744772-7744791 | None:intergenic | 30.0% | |
| ATTCTTTGCACAATACAACA+AGG | + | chr2_3:7744773-7744792 | None:intergenic | 30.0% | |
| ! | TTTTTGATAAGATCTCTTGG+AGG | - | chr2_3:7744835-7744854 | Msa0275600:intron | 30.0% |
| CATCATACCAATTATAGTTC+TGG | - | chr2_3:7744868-7744887 | Msa0275600:intron | 30.0% | |
| !!! | TGTGCTACCATTTTTTTAAG+AGG | - | chr2_3:7745063-7745082 | Msa0275600:CDS | 30.0% |
| ! | TCAAACACTGACTACTAATA+GGG | + | chr2_3:7745281-7745300 | None:intergenic | 30.0% |
| ! | TTCAAACACTGACTACTAAT+AGG | + | chr2_3:7745282-7745301 | None:intergenic | 30.0% |
| GTTTAGAAAACAAAAAGGCA+AGG | + | chr2_3:7745411-7745430 | None:intergenic | 30.0% | |
| AGGCATATTTGCAATAATCA+GGG | + | chr2_3:7745455-7745474 | None:intergenic | 30.0% | |
| TAGGCATATTTGCAATAATC+AGG | + | chr2_3:7745456-7745475 | None:intergenic | 30.0% | |
| ! | CATCTTTTGTACAGAATACA+TGG | + | chr2_3:7745753-7745772 | None:intergenic | 30.0% |
| TATACGATTCTTCCAAAACA+GGG | + | chr2_3:7745819-7745838 | None:intergenic | 30.0% | |
| TCCAAGTGTATAATAAAGCT+GGG | + | chr2_3:7746094-7746113 | None:intergenic | 30.0% | |
| TTCCAAGTGTATAATAAAGC+TGG | + | chr2_3:7746095-7746114 | None:intergenic | 30.0% | |
| !! | AACATTTTGACAATGTTACC+AGG | - | chr2_3:7746130-7746149 | Msa0275600:intron | 30.0% |
| AAGTGTATTGCTTACTGTTT+CGG | - | chr2_3:7746261-7746280 | Msa0275600:intron | 30.0% | |
| CGCTTATATTCATTGACATT+TGG | + | chr2_3:7746363-7746382 | None:intergenic | 30.0% | |
| AAAATGAGGAACTTACTGTT+TGG | + | chr2_3:7746454-7746473 | None:intergenic | 30.0% | |
| ! | TAAAAAGCATGCTACCTATA+TGG | - | chr2_3:7746571-7746590 | Msa0275600:CDS | 30.0% |
| TTTCATAAGATTGAATGCAG+TGG | + | chr2_3:7746622-7746641 | None:intergenic | 30.0% | |
| CTTGAAAATTGTCAATTGAC+TGG | + | chr2_3:7746699-7746718 | None:intergenic | 30.0% | |
| ! | CAGTCAATTGACAATTTTCA+AGG | - | chr2_3:7746697-7746716 | Msa0275600:intron | 30.0% |
| !! | AAGTTTTGTACTTAGTACCA+GGG | + | chr2_3:7746921-7746940 | None:intergenic | 30.0% |
| !! | AAAGTTTTGTACTTAGTACC+AGG | + | chr2_3:7746922-7746941 | None:intergenic | 30.0% |
| CAAAACTTTAATGACAGTTG+GGG | - | chr2_3:7746933-7746952 | Msa0275600:CDS | 30.0% | |
| ! | GTGTTACTATCCTAAGAAAA+GGG | - | chr2_3:7746978-7746997 | Msa0275600:CDS | 30.0% |
| AAATCTGATCTAATAAGCGA+TGG | - | chr2_3:7747001-7747020 | Msa0275600:CDS | 30.0% | |
| ! | TTTTAGCAGAACTGTTCATT+TGG | + | chr2_3:7747319-7747338 | None:intergenic | 30.0% |
| !! | ACTGTTTTAAACATTTGGCA+TGG | - | chr2_3:7747548-7747567 | Msa0275600:intron | 30.0% |
| !! | CTGTTTTAAACATTTGGCAT+GGG | - | chr2_3:7747549-7747568 | Msa0275600:intron | 30.0% |
| !! | TGTTTTAAACATTTGGCATG+GGG | - | chr2_3:7747550-7747569 | Msa0275600:intron | 30.0% |
| AAATGGTTTCGAAACATCTT+TGG | + | chr2_3:7747603-7747622 | None:intergenic | 30.0% | |
| TGTTTCGAAACCATTTGATT+TGG | - | chr2_3:7747607-7747626 | Msa0275600:intron | 30.0% | |
| ! | GTTTCGAAACCATTTGATTT+GGG | - | chr2_3:7747608-7747627 | Msa0275600:intron | 30.0% |
| AATAACAGACCCAAATCAAA+TGG | + | chr2_3:7747620-7747639 | None:intergenic | 30.0% | |
| TTGCTCTTCTTTATGTCATA+TGG | - | chr2_3:7747790-7747809 | Msa0275600:intron | 30.0% | |
| !!! | CATTTTTTGATAGCGAATTG+TGG | - | chr2_3:7748178-7748197 | Msa0275600:intron | 30.0% |
| ! | AGTTTTCACTTATTCCATCT+TGG | - | chr2_3:7748216-7748235 | Msa0275600:intron | 30.0% |
| TTTCTTATCTGAGAAAGCAA+GGG | + | chr2_3:7748755-7748774 | Msa0275610:CDS | 30.0% | |
| ! | TTTTCTTATCTGAGAAAGCA+AGG | + | chr2_3:7748756-7748775 | Msa0275610:CDS | 30.0% |
| ATCTATTCTTTCTTGCAGTT+TGG | - | chr2_3:7748887-7748906 | Msa0275600:five_prime_UTR | 30.0% | |
| ! | CATTTTATACAAGTGTTTGG+AGG | + | chr2_3:7748948-7748967 | None:intergenic | 30.0% |
| TATAAAATGTGTCGAGTTAC+TGG | - | chr2_3:7748959-7748978 | Msa0275600:five_prime_UTR | 30.0% | |
| !! | CAAACAAAGATTTGAGTTGA+TGG | + | chr2_3:7749047-7749066 | None:intergenic | 30.0% |
| ! | CTCAAATCTTTGTTTGTTCA+AGG | - | chr2_3:7749051-7749070 | Msa0275600:five_prime_UTR | 30.0% |
| GCACATATACTCTTCGAATT+AGG | + | chr2_3:7743559-7743578 | None:intergenic | 35.0% | |
| !! | GTTGTTAGTTTGTCTTATGG+TGG | + | chr2_3:7743620-7743639 | None:intergenic | 35.0% |
| CTTTGGTCTGTCATAATGTA+TGG | + | chr2_3:7743662-7743681 | None:intergenic | 35.0% | |
| CAAGCAAATCACCAGATAAT+TGG | - | chr2_3:7743720-7743739 | Msa0275600:three_prime_UTR | 35.0% | |
| GATTCCTTGAAATCAGAAGA+TGG | - | chr2_3:7743921-7743940 | Msa0275600:intron | 35.0% | |
| ACTTGAGCTTTCTCCAAATA+AGG | - | chr2_3:7743996-7744015 | Msa0275600:CDS | 35.0% | |
| AAGATGAATGCAATTAGGTC+AGG | + | chr2_3:7744080-7744099 | None:intergenic | 35.0% | |
| GTGTTGAATTGAAGAGAGTA+TGG | + | chr2_3:7744126-7744145 | None:intergenic | 35.0% | |
| !!! | GTTTTGAGAATCTTCCAGTT+GGG | - | chr2_3:7744267-7744286 | Msa0275600:intron | 35.0% |
| GTACTAAGCTCAGAAATTGA+GGG | + | chr2_3:7744352-7744371 | None:intergenic | 35.0% | |
| AAAATTACTCTAGCCCAGAA+AGG | + | chr2_3:7744374-7744393 | None:intergenic | 35.0% | |
| TTGTGAATTCATGGTTGTGT+TGG | - | chr2_3:7744580-7744599 | Msa0275600:intron | 35.0% | |
| ! | TCATGTTTGGGTTTGTGAAT+AGG | - | chr2_3:7744695-7744714 | Msa0275600:intron | 35.0% |
| ! | CATGTTTGGGTTTGTGAATA+GGG | - | chr2_3:7744696-7744715 | Msa0275600:intron | 35.0% |
| ! | ATGTTTGGGTTTGTGAATAG+GGG | - | chr2_3:7744697-7744716 | Msa0275600:intron | 35.0% |
| GGTCATGTTAATGAAACATG+TGG | - | chr2_3:7744729-7744748 | Msa0275600:intron | 35.0% | |
| TGCAAAGAATTGTATGCTAC+TGG | - | chr2_3:7744783-7744802 | Msa0275600:intron | 35.0% | |
| ! | CGGTTTTTGATAAGATCTCT+TGG | - | chr2_3:7744832-7744851 | Msa0275600:intron | 35.0% |
| CTTTATGTCTACTTCGATCT+AGG | + | chr2_3:7744951-7744970 | None:intergenic | 35.0% | |
| CTAGATCGAAGTAGACATAA+AGG | - | chr2_3:7744949-7744968 | Msa0275600:intron | 35.0% | |
| CTATGATATGTTAGTAGCGA+CGG | - | chr2_3:7745102-7745121 | Msa0275600:CDS | 35.0% | |
| TCTTAATCATCGTTGCATTG+CGG | + | chr2_3:7745198-7745217 | None:intergenic | 35.0% | |
| CATTGCAATCGTTGATATTG+CGG | + | chr2_3:7745241-7745260 | None:intergenic | 35.0% | |
| TACTAATAGGGTAACAGTTG+CGG | + | chr2_3:7745269-7745288 | None:intergenic | 35.0% | |
| TCAGGAAACATAGCTGTTAT+TGG | - | chr2_3:7745562-7745581 | Msa0275600:intron | 35.0% | |
| GAAACATAGCTGTTATTGGA+GGG | - | chr2_3:7745566-7745585 | Msa0275600:intron | 35.0% | |
| !! | AACTATTTTTCCATCCATGC+AGG | - | chr2_3:7745714-7745733 | Msa0275600:intron | 35.0% |
| !! | ACTATTTTTCCATCCATGCA+GGG | - | chr2_3:7745715-7745734 | Msa0275600:intron | 35.0% |
| CTATACGATTCTTCCAAAAC+AGG | + | chr2_3:7745820-7745839 | None:intergenic | 35.0% | |
| ATGAAAGACTAATTTCAGGG+AGG | - | chr2_3:7745918-7745937 | Msa0275600:intron | 35.0% | |
| AAGTTGGCAAATGGTTAGAA+AGG | - | chr2_3:7745977-7745996 | Msa0275600:intron | 35.0% | |
| !! | TCCCAGCTTTATTATACACT+TGG | - | chr2_3:7746090-7746109 | Msa0275600:intron | 35.0% |
| AACATCCCAATTGTGATAGA+TGG | - | chr2_3:7746191-7746210 | Msa0275600:intron | 35.0% | |
| ACATCCCAATTGTGATAGAT+GGG | - | chr2_3:7746192-7746211 | Msa0275600:intron | 35.0% | |
| ATACCCCATCTATCACAATT+GGG | + | chr2_3:7746199-7746218 | None:intergenic | 35.0% | |
| TTACTGTTTCGGCATATTTC+AGG | - | chr2_3:7746272-7746291 | Msa0275600:intron | 35.0% | |
| !! | AATCACCTTGAACTTGTTAG+TGG | - | chr2_3:7746315-7746334 | Msa0275600:intron | 35.0% |
| !!! | ATTGCTTTTTGCAGAATTGG+TGG | - | chr2_3:7746956-7746975 | Msa0275600:CDS | 35.0% |
| !! | GGTGTTACTATCCTAAGAAA+AGG | - | chr2_3:7746977-7746996 | Msa0275600:CDS | 35.0% |
| ! | GATCAGATTTCCCTTTTCTT+AGG | + | chr2_3:7746991-7747010 | None:intergenic | 35.0% |
| AACTAGACAAGAAGGAAAAC+CGG | + | chr2_3:7747060-7747079 | None:intergenic | 35.0% | |
| !!! | TCTAGTTTCTTATTTTGGGC+AGG | - | chr2_3:7747073-7747092 | Msa0275600:intron | 35.0% |
| AAGTGAAAGATGGAAGAACA+AGG | + | chr2_3:7747119-7747138 | None:intergenic | 35.0% | |
| !! | TGAGATTAGTCTATGGGATA+GGG | - | chr2_3:7747462-7747481 | Msa0275600:intron | 35.0% |
| GTCAAAACAGTTAGCATCTA+TGG | - | chr2_3:7747646-7747665 | Msa0275600:intron | 35.0% | |
| GTATTTGTGAAATTCCTTCC+AGG | - | chr2_3:7747741-7747760 | Msa0275600:intron | 35.0% | |
| TACTGCATCATAAAGTTTCC+TGG | + | chr2_3:7747762-7747781 | None:intergenic | 35.0% | |
| AGTAAGAAACTAACAAGGGA+AGG | + | chr2_3:7747887-7747906 | None:intergenic | 35.0% | |
| AAGTGCATTCAAGAAACAGT+TGG | - | chr2_3:7747915-7747934 | Msa0275600:CDS | 35.0% | |
| GAGCTCAAGTACTAAATGAA+CGG | + | chr2_3:7748335-7748354 | None:intergenic | 35.0% | |
| GTTAACCTGAGATATGAATC+TGG | + | chr2_3:7748587-7748606 | None:intergenic | 35.0% | |
| ! | TTCTAAAAATCCAGCAGTGT+TGG | - | chr2_3:7748690-7748709 | Msa0275600:five_prime_UTR | 35.0% |
| TCTAAAAATCCAGCAGTGTT+GGG | - | chr2_3:7748691-7748710 | Msa0275600:five_prime_UTR | 35.0% | |
| AAGAAAAGATCAACTGTCAC+TGG | - | chr2_3:7748769-7748788 | Msa0275600:five_prime_UTR | 35.0% | |
| GTGACATCATTGAATGCTTA+GGG | - | chr2_3:7748791-7748810 | Msa0275600:five_prime_UTR | 35.0% | |
| TCATTGAATGCTTAGGGAAA+AGG | - | chr2_3:7748797-7748816 | Msa0275600:five_prime_UTR | 35.0% | |
| ! | TTTTTACAGGATTGCGTTCA+TGG | - | chr2_3:7749190-7749209 | Msa0275600:five_prime_UTR | 35.0% |
| TATGGTGGTTAAGCAGTGAT+TGG | + | chr2_3:7743605-7743624 | None:intergenic | 40.0% | |
| TTCTGTGCACACCAATTATC+TGG | + | chr2_3:7743734-7743753 | None:intergenic | 40.0% | |
| TGACCCATCTTCTGATTTCA+AGG | + | chr2_3:7743928-7743947 | None:intergenic | 40.0% | |
| ! | AGGTCAGGAATAGTGGTTTT+GGG | + | chr2_3:7744065-7744084 | None:intergenic | 40.0% |
| ! | TAGGTCAGGAATAGTGGTTT+TGG | + | chr2_3:7744066-7744085 | None:intergenic | 40.0% |
| TGCAATTAGGTCAGGAATAG+TGG | + | chr2_3:7744072-7744091 | None:intergenic | 40.0% | |
| !!! | CGTTTTGAGAATCTTCCAGT+TGG | - | chr2_3:7744266-7744285 | Msa0275600:intron | 40.0% |
| GGTACTAAGCTCAGAAATTG+AGG | + | chr2_3:7744353-7744372 | None:intergenic | 40.0% | |
| TTCTGAGCTTAGTACCTTTC+TGG | - | chr2_3:7744357-7744376 | Msa0275600:intron | 40.0% | |
| TCTGAGCTTAGTACCTTTCT+GGG | - | chr2_3:7744358-7744377 | Msa0275600:intron | 40.0% | |
| TTAGGGGATGCATTCATGTT+TGG | - | chr2_3:7744530-7744549 | Msa0275600:intron | 40.0% | |
| TAGGGGATGCATTCATGTTT+GGG | - | chr2_3:7744531-7744550 | Msa0275600:intron | 40.0% | |
| !! | TTGGGGGGTTTGTGTTTTTA+AGG | - | chr2_3:7744669-7744688 | Msa0275600:intron | 40.0% |
| ! | AACCGATGTCTTCTGAAAAC+AGG | + | chr2_3:7744817-7744836 | None:intergenic | 40.0% |
| TGGAAAAATGCAGTCTGTTG+AGG | - | chr2_3:7744888-7744907 | Msa0275600:intron | 40.0% | |
| AGTAGTCAGTGTTTGAACTC+TGG | - | chr2_3:7745285-7745304 | Msa0275600:intron | 40.0% | |
| AACCAATTGAGTCACACCTT+AGG | - | chr2_3:7745331-7745350 | Msa0275600:intron | 40.0% | |
| ACCAATTGAGTCACACCTTA+GGG | - | chr2_3:7745332-7745351 | Msa0275600:intron | 40.0% | |
| TATGTTAGCACATGTCCCTA+AGG | + | chr2_3:7745350-7745369 | None:intergenic | 40.0% | |
| TCAGGGAACTTCTTATCACA+TGG | + | chr2_3:7745438-7745457 | None:intergenic | 40.0% | |
| GGAAACATAGCTGTTATTGG+AGG | - | chr2_3:7745565-7745584 | Msa0275600:intron | 40.0% | |
| GCTGAAATAGCAGCAAAGTA+TGG | + | chr2_3:7745613-7745632 | None:intergenic | 40.0% | |
| TGGAAGAATCGTATAGTGTC+AGG | - | chr2_3:7745824-7745843 | Msa0275600:intron | 40.0% | |
| AAAGACTAATTTCAGGGAGG+AGG | - | chr2_3:7745921-7745940 | Msa0275600:intron | 40.0% | |
| ATCAAGGTTCTTGCTGAAGT+TGG | - | chr2_3:7745961-7745980 | Msa0275600:intron | 40.0% | |
| TTCTTGCTGAAGTTGGCAAA+TGG | - | chr2_3:7745968-7745987 | Msa0275600:intron | 40.0% | |
| AGGTTTGACTGTCTAGTCAT+TGG | - | chr2_3:7745997-7746016 | Msa0275600:intron | 40.0% | |
| GAAGAAATGTGTCTCTTCCA+AGG | + | chr2_3:7746029-7746048 | None:intergenic | 40.0% | |
| CATCCCAATTGTGATAGATG+GGG | - | chr2_3:7746193-7746212 | Msa0275600:intron | 40.0% | |
| CATACCCCATCTATCACAAT+TGG | + | chr2_3:7746200-7746219 | None:intergenic | 40.0% | |
| TAGATGGGGTATGTATGTCA+AGG | - | chr2_3:7746207-7746226 | Msa0275600:intron | 40.0% | |
| TGTTTCGGCATATTTCAGGA+TGG | - | chr2_3:7746276-7746295 | Msa0275600:intron | 40.0% | |
| CATAGCCACTAACAAGTTCA+AGG | + | chr2_3:7746323-7746342 | None:intergenic | 40.0% | |
| TTACACAAGTTAGGATGCTG+AGG | + | chr2_3:7746547-7746566 | None:intergenic | 40.0% | |
| !! | ACAATTTTCAAGGGCTAAGC+TGG | - | chr2_3:7746707-7746726 | Msa0275600:intron | 40.0% |
| AGTGATTTCTCATTACTCCC+TGG | - | chr2_3:7746901-7746920 | Msa0275600:intron | 40.0% | |
| !!! | GGGATTGCTTTTTGCAGAAT+TGG | - | chr2_3:7746953-7746972 | Msa0275600:CDS | 40.0% |
| CTAATAAGCGATGGTGACAA+AGG | - | chr2_3:7747010-7747029 | Msa0275600:CDS | 40.0% | |
| ACTAGACAAGAAGGAAAACC+GGG | + | chr2_3:7747059-7747078 | None:intergenic | 40.0% | |
| !!! | AGTTTCTTATTTTGGGCAGG+TGG | - | chr2_3:7747076-7747095 | Msa0275600:intron | 40.0% |
| !!! | GTTTCTTATTTTGGGCAGGT+GGG | - | chr2_3:7747077-7747096 | Msa0275600:intron | 40.0% |
| TCTTCCATCTTTCACTTGAC+CGG | - | chr2_3:7747122-7747141 | Msa0275600:intron | 40.0% | |
| GATTGGAATCGAAAATGTGC+CGG | + | chr2_3:7747144-7747163 | None:intergenic | 40.0% | |
| GACAACTTTAGTATGGCATG+CGG | + | chr2_3:7747185-7747204 | None:intergenic | 40.0% | |
| TGCCATACTAAAGTTGTCAG+TGG | - | chr2_3:7747187-7747206 | Msa0275600:CDS | 40.0% | |
| ATCTCAGAGAGGACAATTGT+AGG | + | chr2_3:7747448-7747467 | None:intergenic | 40.0% | |
| !! | TCCTCTCTGAGATTAGTCTA+TGG | - | chr2_3:7747455-7747474 | Msa0275600:intron | 40.0% |
| !! | CCTCTCTGAGATTAGTCTAT+GGG | - | chr2_3:7747456-7747475 | Msa0275600:intron | 40.0% |
| !! | CTGAGATTAGTCTATGGGAT+AGG | - | chr2_3:7747461-7747480 | Msa0275600:intron | 40.0% |
| !! | GAGATTAGTCTATGGGATAG+GGG | - | chr2_3:7747463-7747482 | Msa0275600:intron | 40.0% |
| AAATCACTTGCCTTCCAGAA+AGG | + | chr2_3:7747705-7747724 | None:intergenic | 40.0% | |
| GCATCATAAAGTTTCCTGGA+AGG | + | chr2_3:7747758-7747777 | None:intergenic | 40.0% | |
| TCATACAATCACTGTCTCTG+TGG | - | chr2_3:7748070-7748089 | Msa0275600:intron | 40.0% | |
| GCTATCAAAAAATGCCCACA+AGG | + | chr2_3:7748172-7748191 | None:intergenic | 40.0% | |
| CCTATTTCGAATAGCCAAGA+TGG | + | chr2_3:7748233-7748252 | None:intergenic | 40.0% | |
| CCATCTTGGCTATTCGAAAT+AGG | - | chr2_3:7748230-7748249 | Msa0275600:intron | 40.0% | |
| TGGTAATCAAGAGTTCGACA+GGG | + | chr2_3:7748400-7748419 | None:intergenic | 40.0% | |
| ! | TTGGTAATCAAGAGTTCGAC+AGG | + | chr2_3:7748401-7748420 | None:intergenic | 40.0% |
| CTCTCAAGAGAAAAGAGCTT+TGG | + | chr2_3:7748420-7748439 | None:intergenic | 40.0% | |
| !!! | CACTGCTGGATTTTTAGAAC+TGG | + | chr2_3:7748689-7748708 | Msa0275610:CDS | 40.0% |
| GGTGACATCATTGAATGCTT+AGG | - | chr2_3:7748790-7748809 | Msa0275600:five_prime_UTR | 40.0% | |
| TTGGAAGATATTTGTCCTGC+CGG | - | chr2_3:7748906-7748925 | Msa0275600:five_prime_UTR | 40.0% | |
| TGTTCAAGGCAACATTTGTG+TGG | - | chr2_3:7749065-7749084 | Msa0275600:five_prime_UTR | 40.0% | |
| TCTTCGAATTAGGCATGTCC+TGG | + | chr2_3:7743549-7743568 | None:intergenic | 45.0% | |
| TCTATCTCTTTCCCTGAACG+TGG | + | chr2_3:7743903-7743922 | None:intergenic | 45.0% | |
| TCAACAGCAGCAGCAAAATG+AGG | + | chr2_3:7743976-7743995 | None:intergenic | 45.0% | |
| !!! | GTTTTGGGAGCATTAGCGTT+TGG | + | chr2_3:7744050-7744069 | None:intergenic | 45.0% |
| ! | TGTGAATAGGGGTTGCTGTT+TGG | - | chr2_3:7744708-7744727 | Msa0275600:intron | 45.0% |
| ! | CGCCTGTTTTCAGAAGACAT+CGG | - | chr2_3:7744812-7744831 | Msa0275600:intron | 45.0% |
| !! | TGTTGAGGTTGATGCTGAGA+GGG | - | chr2_3:7744903-7744922 | Msa0275600:intron | 45.0% |
| ! | TGTCTACTTCGATCTAGGAC+AGG | + | chr2_3:7744946-7744965 | None:intergenic | 45.0% |
| TCGAAGTAGACATAAAGGCC+AGG | - | chr2_3:7744954-7744973 | Msa0275600:intron | 45.0% | |
| TCCCTAAGGTGTGACTCAAT+TGG | + | chr2_3:7745336-7745355 | None:intergenic | 45.0% | |
| !! | GGACTGTAGCTTTTGATGAC+AGG | + | chr2_3:7745781-7745800 | None:intergenic | 45.0% |
| ! | GTTGATTGTGCACCCTGTTT+TGG | - | chr2_3:7745804-7745823 | Msa0275600:intron | 45.0% |
| GGGGTATGTATGTCAAGGTT+TGG | - | chr2_3:7746212-7746231 | Msa0275600:intron | 45.0% | |
| TAGGATGCTGAGGAAACATG+TGG | + | chr2_3:7746537-7746556 | None:intergenic | 45.0% | |
| GAATGCAGTGGAAGAGAAAC+TGG | + | chr2_3:7746610-7746629 | None:intergenic | 45.0% | |
| GGACCATGAAAGTCTGTAAG+TGG | - | chr2_3:7746773-7746792 | Msa0275600:CDS | 45.0% | |
| ! | CTGCCACTTACAGACTTTCA+TGG | + | chr2_3:7746779-7746798 | None:intergenic | 45.0% |
| GGCCACTGACAACTTTAGTA+TGG | + | chr2_3:7747192-7747211 | None:intergenic | 45.0% | |
| CCCATAGACTAATCTCAGAG+AGG | + | chr2_3:7747459-7747478 | None:intergenic | 45.0% | |
| ! | GGGATAGGGGCTTTATGTTA+TGG | - | chr2_3:7747476-7747495 | Msa0275600:intron | 45.0% |
| ACATTTGGCATGGGGCTTAT+AGG | - | chr2_3:7747558-7747577 | Msa0275600:intron | 45.0% | |
| CATTTGGCATGGGGCTTATA+GGG | - | chr2_3:7747559-7747578 | Msa0275600:intron | 45.0% | |
| TTCCAGAAAGGATATCGCCT+TGG | + | chr2_3:7747693-7747712 | None:intergenic | 45.0% | |
| AAGGCGATATCCTTTCTGGA+AGG | - | chr2_3:7747692-7747711 | Msa0275600:intron | 45.0% | |
| !! | CAGTAGACTCGGTGAATTAG+CGG | + | chr2_3:7748148-7748167 | None:intergenic | 45.0% |
| GAGATATGAATCTGGACCAG+CGG | + | chr2_3:7748579-7748598 | None:intergenic | 45.0% | |
| CTGGTCCAGATTCATATCTC+AGG | - | chr2_3:7748579-7748598 | Msa0275600:five_prime_UTR | 45.0% | |
| CATCATAGCAGAACCAGCAA+TGG | + | chr2_3:7748719-7748738 | Msa0275610:CDS | 45.0% | |
| !! | TTGCTGGTTCTGCTATGATG+AGG | - | chr2_3:7748719-7748738 | Msa0275600:five_prime_UTR | 45.0% |
| ! | TGGTTCTGCTATGATGAGGA+AGG | - | chr2_3:7748723-7748742 | Msa0275600:five_prime_UTR | 45.0% |
| AGGTCACAAACTGCATGAAC+CGG | + | chr2_3:7748928-7748947 | None:intergenic | 45.0% | |
| !! | CTGTTGAGGTTGATGCTGAG+AGG | - | chr2_3:7744902-7744921 | Msa0275600:intron | 50.0% |
| AGTAGACATAAAGGCCAGGC+AGG | - | chr2_3:7744958-7744977 | Msa0275600:intron | 50.0% | |
| GCAAGAATTGTGTACCTGCC+TGG | + | chr2_3:7744975-7744994 | None:intergenic | 50.0% | |
| AAGGTTCTGCACCTGCGAAT+TGG | - | chr2_3:7745142-7745161 | Msa0275600:intron | 50.0% | |
| AGGTTCTGCACCTGCGAATT+GGG | - | chr2_3:7745143-7745162 | Msa0275600:intron | 50.0% | |
| TTGAACTCTGGACCTCCTTC+TGG | - | chr2_3:7745297-7745316 | Msa0275600:intron | 50.0% | |
| TGAACTGAGACACCAGAAGG+AGG | + | chr2_3:7745312-7745331 | None:intergenic | 50.0% | |
| GGTTGAACTGAGACACCAGA+AGG | + | chr2_3:7745315-7745334 | None:intergenic | 50.0% | |
| !! | GGAGGGTGTCGAGAATATAC+AGG | - | chr2_3:7745583-7745602 | Msa0275600:intron | 50.0% |
| AAATCTGCACCCTGCATGGA+TGG | + | chr2_3:7745727-7745746 | None:intergenic | 50.0% | |
| ACAGGGTGCACAATCAACTC+AGG | + | chr2_3:7745802-7745821 | None:intergenic | 50.0% | |
| GACTGTCTAGTCATTGGTCC+AGG | - | chr2_3:7746003-7746022 | Msa0275600:intron | 50.0% | |
| AATGTGTCTCTTCCAAGGCC+TGG | + | chr2_3:7746024-7746043 | None:intergenic | 50.0% | |
| TGATGTCACTCACACAGTCC+TGG | + | chr2_3:7746151-7746170 | None:intergenic | 50.0% | |
| AGAGTAAGCACTTGCTCAGC+AGG | + | chr2_3:7746429-7746448 | None:intergenic | 50.0% | |
| ! | TGTGCCGGTCAAGTGAAAGA+TGG | + | chr2_3:7747129-7747148 | None:intergenic | 50.0% |
| TATGGTTCTCCTAGACGCTG+TGG | - | chr2_3:7747664-7747683 | Msa0275600:intron | 50.0% | |
| ACCGAGTCTACTGACCTTGT+GGG | - | chr2_3:7748155-7748174 | Msa0275600:intron | 50.0% | |
| GACCAGCGGCTTCAATATGT+TGG | + | chr2_3:7748565-7748584 | None:intergenic | 50.0% | |
| ! | TTTTCCGCAGCCCAATTCGC+AGG | + | chr2_3:7745156-7745175 | None:intergenic | 55.0% |
| GGACAAATCTGCACCCTGCA+TGG | + | chr2_3:7745731-7745750 | None:intergenic | 55.0% | |
| CTAGTCATTGGTCCAGGCCT+TGG | - | chr2_3:7746009-7746028 | Msa0275600:intron | 55.0% | |
| GGCCAAGGCGATATCCTTTC+TGG | - | chr2_3:7747688-7747707 | Msa0275600:intron | 55.0% | |
| CACCGAGTCTACTGACCTTG+TGG | - | chr2_3:7748154-7748173 | Msa0275600:intron | 55.0% | |
| GCCCACAAGGTCAGTAGACT+CGG | + | chr2_3:7748159-7748178 | None:intergenic | 55.0% | |
| CGCCAACATATTGAAGCCGC+TGG | - | chr2_3:7748560-7748579 | Msa0275600:five_prime_UTR | 55.0% | |
| GCAATGGATCCCAACACTGC+TGG | + | chr2_3:7748703-7748722 | Msa0275610:CDS | 55.0% | |
| ! | GCAGTGTTGGGATCCATTGC+TGG | - | chr2_3:7748703-7748722 | Msa0275600:five_prime_UTR | 55.0% |
| CACAAACTGCATGAACCGGC+AGG | + | chr2_3:7748924-7748943 | None:intergenic | 55.0% | |
| GACGTGCACGTGTTCCCAAC+TGG | + | chr2_3:7744284-7744303 | None:intergenic | 60.0% | |
| TGCACCTGCGAATTGGGCTG+CGG | - | chr2_3:7745149-7745168 | Msa0275600:intron | 60.0% | |
| GGTTCTCCTAGACGCTGTGG+TGG | - | chr2_3:7747667-7747686 | Msa0275600:intron | 60.0% | |
| CCTTGGCCACCACAGCGTCT+AGG | + | chr2_3:7747676-7747695 | None:intergenic | 65.0% | |
| CCTAGACGCTGTGGTGGCCA+AGG | - | chr2_3:7747673-7747692 | Msa0275600:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 7743546 | 7749228 | 7743546 | ID=Msa0275600;Name=Msa0275600 |
| chr2_3 | mRNA | 7743546 | 7749228 | 7743546 | ID=Msa0275600-mRNA-1;Parent=Msa0275600;Name=Msa0275600-mRNA-1;_AED=0.09;_eAED=0.09;_QI=874|1|1|1|0.90|0.83|12|284|379 |
| chr2_3 | exon | 7743546 | 7743869 | 7743546 | ID=Msa0275600-mRNA-1:exon:3523;Parent=Msa0275600-mRNA-1 |
| chr2_3 | exon | 7743956 | 7744084 | 7743956 | ID=Msa0275600-mRNA-1:exon:3522;Parent=Msa0275600-mRNA-1 |
| chr2_3 | exon | 7744174 | 7744239 | 7744174 | ID=Msa0275600-mRNA-1:exon:3521;Parent=Msa0275600-mRNA-1 |
| chr2_3 | exon | 7745061 | 7745127 | 7745061 | ID=Msa0275600-mRNA-1:exon:3520;Parent=Msa0275600-mRNA-1 |
| chr2_3 | exon | 7745743 | 7745804 | 7745743 | ID=Msa0275600-mRNA-1:exon:3519;Parent=Msa0275600-mRNA-1 |
| chr2_3 | exon | 7746317 | 7746480 | 7746317 | ID=Msa0275600-mRNA-1:exon:3518;Parent=Msa0275600-mRNA-1 |
| chr2_3 | exon | 7746560 | 7746622 | 7746560 | ID=Msa0275600-mRNA-1:exon:3517;Parent=Msa0275600-mRNA-1 |
| chr2_3 | exon | 7746724 | 7746838 | 7746724 | ID=Msa0275600-mRNA-1:exon:3516;Parent=Msa0275600-mRNA-1 |
| chr2_3 | exon | 7746929 | 7747038 | 7746929 | ID=Msa0275600-mRNA-1:exon:3515;Parent=Msa0275600-mRNA-1 |
| chr2_3 | exon | 7747132 | 7747208 | 7747132 | ID=Msa0275600-mRNA-1:exon:3514;Parent=Msa0275600-mRNA-1 |
| chr2_3 | exon | 7747795 | 7748057 | 7747795 | ID=Msa0275600-mRNA-1:exon:3513;Parent=Msa0275600-mRNA-1 |
| chr2_3 | exon | 7748371 | 7749228 | 7748371 | ID=Msa0275600-mRNA-1:exon:3512;Parent=Msa0275600-mRNA-1 |
| chr2_3 | five_prime_UTR | 7748371 | 7749228 | 7748371 | ID=Msa0275600-mRNA-1:five_prime_utr;Parent=Msa0275600-mRNA-1 |
| chr2_3 | five_prime_UTR | 7748042 | 7748057 | 7748042 | ID=Msa0275600-mRNA-1:five_prime_utr;Parent=Msa0275600-mRNA-1 |
| chr2_3 | CDS | 7747795 | 7748041 | 7747795 | ID=Msa0275600-mRNA-1:cds;Parent=Msa0275600-mRNA-1 |
| chr2_3 | CDS | 7747132 | 7747208 | 7747132 | ID=Msa0275600-mRNA-1:cds;Parent=Msa0275600-mRNA-1 |
| chr2_3 | CDS | 7746929 | 7747038 | 7746929 | ID=Msa0275600-mRNA-1:cds;Parent=Msa0275600-mRNA-1 |
| chr2_3 | CDS | 7746724 | 7746838 | 7746724 | ID=Msa0275600-mRNA-1:cds;Parent=Msa0275600-mRNA-1 |
| chr2_3 | CDS | 7746560 | 7746622 | 7746560 | ID=Msa0275600-mRNA-1:cds;Parent=Msa0275600-mRNA-1 |
| chr2_3 | CDS | 7746317 | 7746480 | 7746317 | ID=Msa0275600-mRNA-1:cds;Parent=Msa0275600-mRNA-1 |
| chr2_3 | CDS | 7745743 | 7745804 | 7745743 | ID=Msa0275600-mRNA-1:cds;Parent=Msa0275600-mRNA-1 |
| chr2_3 | CDS | 7745061 | 7745127 | 7745061 | ID=Msa0275600-mRNA-1:cds;Parent=Msa0275600-mRNA-1 |
| chr2_3 | CDS | 7744174 | 7744239 | 7744174 | ID=Msa0275600-mRNA-1:cds;Parent=Msa0275600-mRNA-1 |
| chr2_3 | CDS | 7743956 | 7744084 | 7743956 | ID=Msa0275600-mRNA-1:cds;Parent=Msa0275600-mRNA-1 |
| chr2_3 | CDS | 7743830 | 7743869 | 7743830 | ID=Msa0275600-mRNA-1:cds;Parent=Msa0275600-mRNA-1 |
| chr2_3 | three_prime_UTR | 7743546 | 7743829 | 7743546 | ID=Msa0275600-mRNA-1:three_prime_utr;Parent=Msa0275600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
