Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0759970 | G7K428 | 92.884 | 267 | 19 | 0 | 1 | 267 | 1 | 267 | 7.20e-156 | 444 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0617830 | Msa0759970 | 0.800687 | 1.282464e-48 | -8.615850e-47 |
| Msa0704730 | Msa0759970 | 0.815239 | 1.023572e-51 | -8.615850e-47 |
| Msa0759970 | Msa0801360 | 0.883034 | 6.313566e-71 | -8.615850e-47 |
| Msa0759970 | Msa0839830 | 0.883368 | 4.761001e-71 | -8.615850e-47 |
| Msa0759970 | Msa0898860 | 0.814438 | 1.540962e-51 | -8.615850e-47 |
| Msa0759970 | Msa1079730 | -0.812111 | 4.995971e-51 | -8.615850e-47 |
| Msa0759970 | Msa1168040 | -0.804819 | 1.799063e-49 | -8.615850e-47 |
| Msa0759970 | Msa1187520 | 0.804533 | 2.063745e-49 | -8.615850e-47 |
| Msa0759970 | Msa1212760 | 0.829099 | 6.220015e-55 | -8.615850e-47 |
| Msa0759970 | Msa1212980 | 0.824338 | 8.518767e-54 | -8.615850e-47 |
| Msa0759970 | Msa1241820 | 0.840789 | 7.036156e-58 | -8.615850e-47 |
| Msa0759970 | Msa1260130 | 0.810292 | 1.239100e-50 | -8.615850e-47 |
| Msa0759970 | Msa1282920 | 0.813455 | 2.538221e-51 | -8.615850e-47 |
| Msa0759970 | Msa1300050 | 0.803416 | 3.522731e-49 | -8.615850e-47 |
| Msa0129360 | Msa0759970 | 0.801311 | 9.560898e-49 | -8.615850e-47 |
| Msa0377280 | Msa0759970 | 0.801303 | 9.595569e-49 | -8.615850e-47 |
| Msa0379380 | Msa0759970 | 0.818471 | 1.926943e-52 | -8.615850e-47 |
| Msa0379410 | Msa0759970 | 0.833379 | 5.516462e-56 | -8.615850e-47 |
| Msa0388840 | Msa0759970 | 0.800499 | 1.400333e-48 | -8.615850e-47 |
| Msa0404090 | Msa0759970 | 0.804872 | 1.753180e-49 | -8.615850e-47 |
| Msa0307470 | Msa0759970 | 0.818795 | 1.626546e-52 | -8.615850e-47 |
| Msa0536650 | Msa0759970 | 0.805066 | 1.596961e-49 | -8.615850e-47 |
| Msa0577120 | Msa0759970 | 0.812718 | 3.682593e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0759970 | MtrunA17_Chr5g0408291 | 92.884 | 267 | 19 | 0 | 1 | 267 | 1 | 267 | 1.39e-159 | 444 |
| Msa0759970 | MtrunA17_Chr4g0034241 | 44.843 | 223 | 101 | 5 | 56 | 267 | 51 | 262 | 2.01e-56 | 181 |
| Msa0759970 | MtrunA17_Chr4g0042851 | 38.418 | 177 | 95 | 3 | 95 | 265 | 123 | 291 | 1.00e-39 | 139 |
| Msa0759970 | MtrunA17_Chr3g0089821 | 41.429 | 70 | 27 | 1 | 198 | 267 | 8 | 63 | 9.48e-12 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0759970 | AT4G19390.1 | 65.574 | 183 | 63 | 0 | 85 | 267 | 91 | 273 | 9.88e-84 | 252 |
| Msa0759970 | AT4G19390.2 | 65.698 | 172 | 59 | 0 | 96 | 267 | 14 | 185 | 2.70e-79 | 238 |
| Msa0759970 | AT5G13720.1 | 48.925 | 186 | 81 | 4 | 92 | 267 | 80 | 261 | 1.01e-53 | 175 |
Find 66 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAAATTTGAGGTGAATT+TGG | 0.196817 | 5_2:+15965468 | None:intergenic |
| TCTGATAGATCAAATCTATT+TGG | 0.202531 | 5_2:-15963451 | Msa0759970:CDS |
| TGCCGGTTTCTTGCTATTCT+TGG | 0.205672 | 5_2:-15964604 | Msa0759970:CDS |
| TTAAACATGTATGCAAATTA+AGG | 0.228466 | 5_2:+15963084 | None:intergenic |
| CCGTATGTTGCTTCCAATTC+GGG | 0.234633 | 5_2:-15965144 | Msa0759970:CDS |
| TGTTGGGATATAAAAGTTTC+AGG | 0.236692 | 5_2:-15965236 | Msa0759970:CDS |
| GATGATGGTGTTATAGTAAA+TGG | 0.243484 | 5_2:+15965312 | None:intergenic |
| ATTCTGTACATATTAATATT+AGG | 0.264478 | 5_2:-15962972 | Msa0759970:three_prime_UTR |
| GAGAGTCAAGGTTGTTGATT+TGG | 0.287553 | 5_2:+15965378 | None:intergenic |
| GCCGTATGTTGCTTCCAATT+CGG | 0.293511 | 5_2:-15965145 | Msa0759970:CDS |
| GGTGAATTTGGCTTTGTCTT+TGG | 0.303093 | 5_2:+15965480 | None:intergenic |
| AACAGAATCTAAACCCGAAT+TGG | 0.363263 | 5_2:+15965131 | None:intergenic |
| TGAAGTATGTTGCATGTCTT+AGG | 0.364725 | 5_2:-15962948 | Msa0759970:three_prime_UTR |
| GGAACGGTGATGCTAGTCTT+TGG | 0.366383 | 5_2:-15963541 | Msa0759970:CDS |
| CTTCTCAGGAACGACCAAAA+TGG | 0.370797 | 5_2:-15963302 | Msa0759970:intron |
| GTTTGGTGCCACTAGTTGTT+TGG | 0.381707 | 5_2:+15965502 | None:intergenic |
| CCTGAGACAGTTTCATGGTT+GGG | 0.383325 | 5_2:+15965349 | None:intergenic |
| GGCAGAAGGGTTTCTGTGTT+GGG | 0.394157 | 5_2:-15965252 | Msa0759970:CDS |
| AGATTCTGTTGTATCTCATC+AGG | 0.402390 | 5_2:-15965118 | Msa0759970:CDS |
| AATTCTATCTTCAGCTCATA+TGG | 0.405829 | 5_2:-15965273 | Msa0759970:CDS |
| CATGTAGATCTCTATCTCTT+AGG | 0.406031 | 5_2:-15963562 | Msa0759970:intron |
| ATTTGGCTTATTCACTTTGA+AGG | 0.417143 | 5_2:-15963434 | Msa0759970:intron |
| ATAGTGATGCTGCTTCTGAT+TGG | 0.427966 | 5_2:-15963231 | Msa0759970:CDS |
| ATTTGGCTTTGTCTTTGGTT+TGG | 0.431686 | 5_2:+15965485 | None:intergenic |
| CAATGCCTGAGACAGTTTCA+TGG | 0.442267 | 5_2:+15965344 | None:intergenic |
| TCATCACTCATGAGAATGTA+AGG | 0.461535 | 5_2:-15963058 | Msa0759970:three_prime_UTR |
| TGGCAGAAGGGTTTCTGTGT+TGG | 0.462058 | 5_2:-15965253 | Msa0759970:CDS |
| TCAGGAGATGTCAGGGAGGT+TGG | 0.463862 | 5_2:-15965100 | Msa0759970:CDS |
| CTCCAAGAATAGCAAGAAAC+CGG | 0.468046 | 5_2:+15964602 | None:intergenic |
| GTATCTCATCAGGAGATGTC+AGG | 0.472937 | 5_2:-15965108 | Msa0759970:CDS |
| TTTGTTTGACAGAAGTAAGA+AGG | 0.477435 | 5_2:-15963208 | Msa0759970:CDS |
| TGTAGGTGATTTATAGATGC+CGG | 0.489478 | 5_2:-15964621 | Msa0759970:intron |
| ATCAATTCTATGTTTCATCA+AGG | 0.489947 | 5_2:-15964560 | Msa0759970:intron |
| CACTATCACATGACCAACCT+TGG | 0.497716 | 5_2:+15963248 | None:intergenic |
| CATGAAACTGTCTCAGGCAT+TGG | 0.498268 | 5_2:-15965343 | Msa0759970:CDS |
| ATCAGTGTCAAACACAAAGA+TGG | 0.504506 | 5_2:+15965449 | None:intergenic |
| GAAGCAACATACGGCGATGA+AGG | 0.508512 | 5_2:+15965153 | None:intergenic |
| TTTGCTGTCCAAGCTGAATG+AGG | 0.509196 | 5_2:-15963115 | Msa0759970:CDS |
| TTAATTAGCCTCATTCAGCT+TGG | 0.510184 | 5_2:+15963107 | None:intergenic |
| GCCTGAGACAGTTTCATGGT+TGG | 0.516678 | 5_2:+15965348 | None:intergenic |
| CCCGAATTGGAAGCAACATA+CGG | 0.523923 | 5_2:+15965144 | None:intergenic |
| GCAATTGAATTACTTTACTA+CGG | 0.524763 | 5_2:+15964150 | None:intergenic |
| AATAGATTTGATCTATCAGA+AGG | 0.529196 | 5_2:+15963454 | None:intergenic |
| CCCAACCATGAAACTGTCTC+AGG | 0.536021 | 5_2:-15965349 | Msa0759970:exon |
| TGACAGTGAATTAACGATGA+TGG | 0.540521 | 5_2:+15965297 | None:intergenic |
| GTGATGCTAGTCTTTGGAAT+GGG | 0.541127 | 5_2:-15963535 | Msa0759970:CDS |
| AACACAAAGATGGAAATTTG+AGG | 0.544773 | 5_2:+15965459 | None:intergenic |
| TCTTCAGCTCATATGGCAGA+AGG | 0.556818 | 5_2:-15965266 | Msa0759970:CDS |
| GAGATGTCAGGGAGGTTGGA+AGG | 0.568738 | 5_2:-15965096 | Msa0759970:CDS |
| AGGTTGGAAGGCATAGAAGA+AGG | 0.570718 | 5_2:-15965084 | Msa0759970:CDS |
| GGTGATGCTAGTCTTTGGAA+TGG | 0.578084 | 5_2:-15963536 | Msa0759970:CDS |
| ATACGGCGATGAAGGATTCA+CGG | 0.578205 | 5_2:+15965161 | None:intergenic |
| CTTCAGCTCATATGGCAGAA+GGG | 0.578699 | 5_2:-15965265 | Msa0759970:CDS |
| AAAAGACTCTGCAACAAATG+TGG | 0.581983 | 5_2:+15964190 | None:intergenic |
| CAATTGCTGATAGAAGCTCT+TGG | 0.584191 | 5_2:-15964134 | Msa0759970:intron |
| GTTGGGATTTCAGAGAGTCA+AGG | 0.603072 | 5_2:+15965366 | None:intergenic |
| CATAGAAGAAGGCATTGAGA+AGG | 0.605938 | 5_2:-15965073 | Msa0759970:intron |
| CAGAAGCATAACAAATCCAC+AGG | 0.610865 | 5_2:+15963171 | None:intergenic |
| AATGAACTGAAAACCAAGGT+TGG | 0.611400 | 5_2:-15963261 | Msa0759970:CDS |
| GGCTACTATTCAAACTCCTG+TGG | 0.612934 | 5_2:-15963187 | Msa0759970:CDS |
| AATTCTCTCCAAACAACTAG+TGG | 0.627133 | 5_2:-15965510 | Msa0759970:five_prime_UTR |
| TATCTCATCAGGAGATGTCA+GGG | 0.635748 | 5_2:-15965107 | Msa0759970:CDS |
| AGATCTCTATCTCTTAGGAA+CGG | 0.665995 | 5_2:-15963557 | Msa0759970:CDS |
| CACGGCAGATGAAGAAACAG+AGG | 0.674392 | 5_2:+15965179 | None:intergenic |
| AGTGAATGAACTGAAAACCA+AGG | 0.699304 | 5_2:-15963265 | Msa0759970:CDS |
| CTCATCAGGAGATGTCAGGG+AGG | 0.743544 | 5_2:-15965104 | Msa0759970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAATTACAAACAATTAA+AGG | + | chr5_2:15963732-15963751 | None:intergenic | 15.0% |
| !!! | ATTGACAAATACAATAATTT+TGG | + | chr5_2:15963938-15963957 | None:intergenic | 15.0% |
| !! | AAAATTATTGTATTTGTCAA+TGG | - | chr5_2:15963937-15963956 | Msa0759970:intron | 15.0% |
| !! | AAATTATTGTATTTGTCAAT+GGG | - | chr5_2:15963938-15963957 | Msa0759970:intron | 15.0% |
| !!! | AACTAATTATACAAACTTTT+AGG | + | chr5_2:15964341-15964360 | None:intergenic | 15.0% |
| !! | ATTCTGTACATATTAATATT+AGG | - | chr5_2:15965455-15965474 | Msa0759970:five_prime_UTR | 15.0% |
| !! | ATAAGTTATTTATCTACACA+TGG | + | chr5_2:15963389-15963408 | None:intergenic | 20.0% |
| !! | TGTTTGTAATTATCTTTGAA+TGG | - | chr5_2:15963737-15963756 | Msa0759970:intron | 20.0% |
| !!! | CTAATGTTATTTAATCACAA+AGG | + | chr5_2:15964417-15964436 | None:intergenic | 20.0% |
| !!! | TTTTTTTCCCGTTAAAATTT+AGG | - | chr5_2:15964496-15964515 | Msa0759970:intron | 20.0% |
| !!! | GTTTTTATATTCAACCATTT+TGG | + | chr5_2:15965142-15965161 | None:intergenic | 20.0% |
| !! | TTAAACATGTATGCAAATTA+AGG | + | chr5_2:15965346-15965365 | None:intergenic | 20.0% |
| !!! | GCTGTTTTAAGTAGTTAATT+AGG | - | chr5_2:15963485-15963504 | Msa0759970:CDS | 25.0% |
| !!! | TTGTAATCATTGGTTTGTTT+CGG | - | chr5_2:15963660-15963679 | Msa0759970:intron | 25.0% |
| !!! | CTTTGAATGGTTTTGAATTT+TGG | - | chr5_2:15963750-15963769 | Msa0759970:intron | 25.0% |
| ! | ATCAATTCTATGTTTCATCA+AGG | - | chr5_2:15963867-15963886 | Msa0759970:intron | 25.0% |
| !! | ATTGTTCAATTTTACATGCA+GGG | - | chr5_2:15964212-15964231 | Msa0759970:intron | 25.0% |
| ! | GCAATTGAATTACTTTACTA+CGG | + | chr5_2:15964280-15964299 | None:intergenic | 25.0% |
| ! | GTTCAATTTCATTCATGATA+GGG | + | chr5_2:15964441-15964460 | None:intergenic | 25.0% |
| ! | AGTTCAATTTCATTCATGAT+AGG | + | chr5_2:15964442-15964461 | None:intergenic | 25.0% |
| !!! | AGTTAGTCCTAAATTTTAAC+GGG | + | chr5_2:15964506-15964525 | None:intergenic | 25.0% |
| !! | GAGTTAGTCCTAAATTTTAA+CGG | + | chr5_2:15964507-15964526 | None:intergenic | 25.0% |
| ! | CGATATGAGTTTATAAAAAG+AGG | + | chr5_2:15964564-15964583 | None:intergenic | 25.0% |
| !!! | GTTAGACCTAAATTTTAACA+CGG | + | chr5_2:15964706-15964725 | None:intergenic | 25.0% |
| ! | GTTAGACTTAAAATTGAAGA+TGG | - | chr5_2:15964758-15964777 | Msa0759970:intron | 25.0% |
| ! | TGTTATTCTCTTCTTTCTAA+CGG | - | chr5_2:15964829-15964848 | Msa0759970:intron | 25.0% |
| ! | AATAGATTTGATCTATCAGA+AGG | + | chr5_2:15964976-15964995 | None:intergenic | 25.0% |
| ! | TCTGATAGATCAAATCTATT+TGG | - | chr5_2:15964976-15964995 | Msa0759970:intron | 25.0% |
| ! | ATGGAAATTTGAGGTGAATT+TGG | + | chr5_2:15962962-15962981 | None:intergenic | 30.0% |
| AACACAAAGATGGAAATTTG+AGG | + | chr5_2:15962971-15962990 | None:intergenic | 30.0% | |
| !! | GATGATGGTGTTATAGTAAA+TGG | + | chr5_2:15963118-15963137 | None:intergenic | 30.0% |
| AATTCTATCTTCAGCTCATA+TGG | - | chr5_2:15963154-15963173 | Msa0759970:CDS | 30.0% | |
| TGTTGGGATATAAAAGTTTC+AGG | - | chr5_2:15963191-15963210 | Msa0759970:CDS | 30.0% | |
| TTCTTCTTCGTTGTAATCAT+TGG | - | chr5_2:15963650-15963669 | Msa0759970:intron | 30.0% | |
| ! | TTTTGTGTGATGTATTGTGT+AGG | - | chr5_2:15963789-15963808 | Msa0759970:intron | 30.0% |
| !! | TTGCTATTCTTGGAGTTTTT+GGG | - | chr5_2:15963833-15963852 | Msa0759970:intron | 30.0% |
| AATAGTGTGCATTTGTGATT+TGG | - | chr5_2:15964026-15964045 | Msa0759970:intron | 30.0% | |
| GATTATACACTTTCTCAAAC+TGG | - | chr5_2:15964110-15964129 | Msa0759970:intron | 30.0% | |
| ! | CATTGTTCAATTTTACATGC+AGG | - | chr5_2:15964211-15964230 | Msa0759970:intron | 30.0% |
| !!! | ATTTGTTGCAGAGTCTTTTT+TGG | - | chr5_2:15964241-15964260 | Msa0759970:intron | 30.0% |
| !!! | TTTGTTGCAGAGTCTTTTTT+GGG | - | chr5_2:15964242-15964261 | Msa0759970:intron | 30.0% |
| GAATGAAATTGAACTGATAC+TGG | - | chr5_2:15964447-15964466 | Msa0759970:intron | 30.0% | |
| TTGGTGCGTTTATTGATATT+GGG | - | chr5_2:15964655-15964674 | Msa0759970:intron | 30.0% | |
| CTGATACCGTGTTAAAATTT+AGG | - | chr5_2:15964697-15964716 | Msa0759970:intron | 30.0% | |
| ! | ATTTGGCTTATTCACTTTGA+AGG | - | chr5_2:15964993-15965012 | Msa0759970:intron | 30.0% |
| TTTGTTTGACAGAAGTAAGA+AGG | - | chr5_2:15965219-15965238 | Msa0759970:CDS | 30.0% | |
| AATTCTCTCCAAACAACTAG+TGG | - | chr5_2:15962917-15962936 | Msa0759970:three_prime_UTR | 35.0% | |
| !! | ATTTGGCTTTGTCTTTGGTT+TGG | + | chr5_2:15962945-15962964 | None:intergenic | 35.0% |
| ATCAGTGTCAAACACAAAGA+TGG | + | chr5_2:15962981-15963000 | None:intergenic | 35.0% | |
| TGACAGTGAATTAACGATGA+TGG | + | chr5_2:15963133-15963152 | None:intergenic | 35.0% | |
| AACAGAATCTAAACCCGAAT+TGG | + | chr5_2:15963299-15963318 | None:intergenic | 35.0% | |
| AGATTCTGTTGTATCTCATC+AGG | - | chr5_2:15963309-15963328 | Msa0759970:intron | 35.0% | |
| TCAAATAAGCCAATCCAATC+TGG | - | chr5_2:15963598-15963617 | Msa0759970:intron | 35.0% | |
| TGTAGGTGATTTATAGATGC+CGG | - | chr5_2:15963806-15963825 | Msa0759970:intron | 35.0% | |
| !!! | CTTGCTATTCTTGGAGTTTT+TGG | - | chr5_2:15963832-15963851 | Msa0759970:intron | 35.0% |
| !!! | GGAGTTTTTGGGTCTTTAAT+TGG | - | chr5_2:15963844-15963863 | Msa0759970:intron | 35.0% |
| TAGAATCATGTAGTCTTCTC+TGG | + | chr5_2:15963991-15964010 | None:intergenic | 35.0% | |
| TCACAAATGCACACTATTGA+AGG | + | chr5_2:15964024-15964043 | None:intergenic | 35.0% | |
| AAAAGACTCTGCAACAAATG+TGG | + | chr5_2:15964240-15964259 | None:intergenic | 35.0% | |
| !!! | AGAGTCTTTTTTGGGATACT+TGG | - | chr5_2:15964250-15964269 | Msa0759970:intron | 35.0% |
| CTAACTCATCCTTACAAATC+CGG | - | chr5_2:15964520-15964539 | Msa0759970:intron | 35.0% | |
| TTCAATAGTACTATGCGTGA+GGG | + | chr5_2:15964634-15964653 | None:intergenic | 35.0% | |
| ACGCATAGTACTATTGAACT+TGG | - | chr5_2:15964636-15964655 | Msa0759970:intron | 35.0% | |
| ! | CTTGGTGCGTTTATTGATAT+TGG | - | chr5_2:15964654-15964673 | Msa0759970:intron | 35.0% |
| CTAACTCATCGTTACAAAAC+TGG | + | chr5_2:15964743-15964762 | None:intergenic | 35.0% | |
| GACAACACTAACACAAAAGT+AGG | + | chr5_2:15964788-15964807 | None:intergenic | 35.0% | |
| ! | AGTGTTGTCATTGTTCTAAG+AGG | - | chr5_2:15964799-15964818 | Msa0759970:intron | 35.0% |
| CATGTAGATCTCTATCTCTT+AGG | - | chr5_2:15964865-15964884 | Msa0759970:intron | 35.0% | |
| AGATCTCTATCTCTTAGGAA+CGG | - | chr5_2:15964870-15964889 | Msa0759970:intron | 35.0% | |
| ! | CTATCAGAAGGTTTTTGATC+TGG | + | chr5_2:15964964-15964983 | None:intergenic | 35.0% |
| !! | AAATCCTACTGACTTGGATA+AGG | + | chr5_2:15965050-15965069 | None:intergenic | 35.0% |
| TCCAAGTCAGTAGGATTTAA+TGG | - | chr5_2:15965052-15965071 | Msa0759970:intron | 35.0% | |
| ! | ACCATTAAATCCTACTGACT+TGG | + | chr5_2:15965056-15965075 | None:intergenic | 35.0% |
| AGTGAATGAACTGAAAACCA+AGG | - | chr5_2:15965162-15965181 | Msa0759970:CDS | 35.0% | |
| AATGAACTGAAAACCAAGGT+TGG | - | chr5_2:15965166-15965185 | Msa0759970:CDS | 35.0% | |
| ! | TTAATTAGCCTCATTCAGCT+TGG | + | chr5_2:15965323-15965342 | None:intergenic | 35.0% |
| TCATCACTCATGAGAATGTA+AGG | - | chr5_2:15965369-15965388 | Msa0759970:five_prime_UTR | 35.0% | |
| TGAAGTATGTTGCATGTCTT+AGG | - | chr5_2:15965479-15965498 | Msa0759970:five_prime_UTR | 35.0% | |
| !! | GGTGAATTTGGCTTTGTCTT+TGG | + | chr5_2:15962950-15962969 | None:intergenic | 40.0% |
| ! | GAGAGTCAAGGTTGTTGATT+TGG | + | chr5_2:15963052-15963071 | None:intergenic | 40.0% |
| TATCTCATCAGGAGATGTCA+GGG | - | chr5_2:15963320-15963339 | Msa0759970:intron | 40.0% | |
| !! | CATAGAAGAAGGCATTGAGA+AGG | - | chr5_2:15963354-15963373 | Msa0759970:intron | 40.0% |
| GTCTTACAACCAGATTGGAT+TGG | + | chr5_2:15963610-15963629 | None:intergenic | 40.0% | |
| CACATGTCTTACAACCAGAT+TGG | + | chr5_2:15963615-15963634 | None:intergenic | 40.0% | |
| AGACATGTGATGAGAGTTTG+TGG | - | chr5_2:15963626-15963645 | Msa0759970:intron | 40.0% | |
| CTCCAAGAATAGCAAGAAAC+CGG | + | chr5_2:15963828-15963847 | None:intergenic | 40.0% | |
| CAATTGCTGATAGAAGCTCT+TGG | - | chr5_2:15964293-15964312 | Msa0759970:intron | 40.0% | |
| CCATACAAACCGGATTTGTA+AGG | + | chr5_2:15964532-15964551 | None:intergenic | 40.0% | |
| ! | CCTTACAAATCCGGTTTGTA+TGG | - | chr5_2:15964529-15964548 | Msa0759970:intron | 40.0% |
| GAAAAACCCAAGTTCCACAT+GGG | + | chr5_2:15964601-15964620 | None:intergenic | 40.0% | |
| TCAATAGTACTATGCGTGAG+GGG | + | chr5_2:15964633-15964652 | None:intergenic | 40.0% | |
| GTTCAATAGTACTATGCGTG+AGG | + | chr5_2:15964635-15964654 | None:intergenic | 40.0% | |
| !! | GTGATGCTAGTCTTTGGAAT+GGG | - | chr5_2:15964892-15964911 | Msa0759970:intron | 40.0% |
| ! | TGACTTGGATAAGGTTGACT+AGG | + | chr5_2:15965041-15965060 | None:intergenic | 40.0% |
| TCAACCTTATCCAAGTCAGT+AGG | - | chr5_2:15965043-15965062 | Msa0759970:intron | 40.0% | |
| ! | ATAGTGATGCTGCTTCTGAT+TGG | - | chr5_2:15965196-15965215 | Msa0759970:CDS | 40.0% |
| ! | CAGAAGCATAACAAATCCAC+AGG | + | chr5_2:15965259-15965278 | None:intergenic | 40.0% |
| !! | GTTTGGTGCCACTAGTTGTT+TGG | + | chr5_2:15962928-15962947 | None:intergenic | 45.0% |
| GTTGGGATTTCAGAGAGTCA+AGG | + | chr5_2:15963064-15963083 | None:intergenic | 45.0% | |
| CCTGAGACAGTTTCATGGTT+GGG | + | chr5_2:15963081-15963100 | None:intergenic | 45.0% | |
| CAATGCCTGAGACAGTTTCA+TGG | + | chr5_2:15963086-15963105 | None:intergenic | 45.0% | |
| CATGAAACTGTCTCAGGCAT+TGG | - | chr5_2:15963084-15963103 | Msa0759970:three_prime_UTR | 45.0% | |
| TCTTCAGCTCATATGGCAGA+AGG | - | chr5_2:15963161-15963180 | Msa0759970:CDS | 45.0% | |
| CTTCAGCTCATATGGCAGAA+GGG | - | chr5_2:15963162-15963181 | Msa0759970:CDS | 45.0% | |
| ATACGGCGATGAAGGATTCA+CGG | + | chr5_2:15963269-15963288 | None:intergenic | 45.0% | |
| ! | GCCGTATGTTGCTTCCAATT+CGG | - | chr5_2:15963282-15963301 | Msa0759970:CDS | 45.0% |
| CCCGAATTGGAAGCAACATA+CGG | + | chr5_2:15963286-15963305 | None:intergenic | 45.0% | |
| ! | CCGTATGTTGCTTCCAATTC+GGG | - | chr5_2:15963283-15963302 | Msa0759970:CDS | 45.0% |
| GTATCTCATCAGGAGATGTC+AGG | - | chr5_2:15963319-15963338 | Msa0759970:intron | 45.0% | |
| ! | AGGTTGGAAGGCATAGAAGA+AGG | - | chr5_2:15963343-15963362 | Msa0759970:intron | 45.0% |
| !! | TGCCGGTTTCTTGCTATTCT+TGG | - | chr5_2:15963823-15963842 | Msa0759970:intron | 45.0% |
| ! | CAAATCCGGTTTGTATGGTG+AGG | - | chr5_2:15964534-15964553 | Msa0759970:intron | 45.0% |
| AGAATCCTACCTATCCCATG+TGG | - | chr5_2:15964584-15964603 | Msa0759970:CDS | 45.0% | |
| AAGTTCCACATGGGATAGGT+AGG | + | chr5_2:15964592-15964611 | None:intergenic | 45.0% | |
| TACCTATCCCATGTGGAACT+TGG | - | chr5_2:15964591-15964610 | Msa0759970:CDS | 45.0% | |
| ACCTATCCCATGTGGAACTT+GGG | - | chr5_2:15964592-15964611 | Msa0759970:CDS | 45.0% | |
| GGAAAAACCCAAGTTCCACA+TGG | + | chr5_2:15964602-15964621 | None:intergenic | 45.0% | |
| CAATAGTACTATGCGTGAGG+GGG | + | chr5_2:15964632-15964651 | None:intergenic | 45.0% | |
| ATTGGGTAACCCGAATCGAT+AGG | - | chr5_2:15964672-15964691 | Msa0759970:intron | 45.0% | |
| !! | GTATCAGAGCCTATCGATTC+GGG | + | chr5_2:15964684-15964703 | None:intergenic | 45.0% |
| ! | GGTATCAGAGCCTATCGATT+CGG | + | chr5_2:15964685-15964704 | None:intergenic | 45.0% |
| !! | GGTGATGCTAGTCTTTGGAA+TGG | - | chr5_2:15964891-15964910 | Msa0759970:intron | 45.0% |
| AGCATCAAAGTACAGCAGAG+AGG | + | chr5_2:15965089-15965108 | None:intergenic | 45.0% | |
| TTCCAATGTTGCTCCTTCTC+AGG | - | chr5_2:15965111-15965130 | Msa0759970:CDS | 45.0% | |
| TTCCTGAGAAGGAGCAACAT+TGG | + | chr5_2:15965116-15965135 | None:intergenic | 45.0% | |
| !! | CATTTTGGTCGTTCCTGAGA+AGG | + | chr5_2:15965127-15965146 | None:intergenic | 45.0% |
| CTTCTCAGGAACGACCAAAA+TGG | - | chr5_2:15965125-15965144 | Msa0759970:CDS | 45.0% | |
| CACTATCACATGACCAACCT+TGG | + | chr5_2:15965182-15965201 | None:intergenic | 45.0% | |
| GGCTACTATTCAAACTCCTG+TGG | - | chr5_2:15965240-15965259 | Msa0759970:CDS | 45.0% | |
| ! | TTTGCTGTCCAAGCTGAATG+AGG | - | chr5_2:15965312-15965331 | Msa0759970:CDS | 45.0% |
| CCCAACCATGAAACTGTCTC+AGG | - | chr5_2:15963078-15963097 | Msa0759970:three_prime_UTR | 50.0% | |
| GCCTGAGACAGTTTCATGGT+TGG | + | chr5_2:15963082-15963101 | None:intergenic | 50.0% | |
| TGGCAGAAGGGTTTCTGTGT+TGG | - | chr5_2:15963174-15963193 | Msa0759970:CDS | 50.0% | |
| GGCAGAAGGGTTTCTGTGTT+GGG | - | chr5_2:15963175-15963194 | Msa0759970:CDS | 50.0% | |
| CACGGCAGATGAAGAAACAG+AGG | + | chr5_2:15963251-15963270 | None:intergenic | 50.0% | |
| GAAGCAACATACGGCGATGA+AGG | + | chr5_2:15963277-15963296 | None:intergenic | 50.0% | |
| GCACTCCTCACCATACAAAC+CGG | + | chr5_2:15964542-15964561 | None:intergenic | 50.0% | |
| ACCCAAGTTCCACATGGGAT+AGG | + | chr5_2:15964596-15964615 | None:intergenic | 50.0% | |
| TATGCGTGAGGGGGTCTATT+AGG | + | chr5_2:15964623-15964642 | None:intergenic | 50.0% | |
| !! | GGAACGGTGATGCTAGTCTT+TGG | - | chr5_2:15964886-15964905 | Msa0759970:intron | 50.0% |
| CTCATCAGGAGATGTCAGGG+AGG | - | chr5_2:15963323-15963342 | Msa0759970:intron | 55.0% | |
| TCAGGAGATGTCAGGGAGGT+TGG | - | chr5_2:15963327-15963346 | Msa0759970:intron | 55.0% | |
| GAGATGTCAGGGAGGTTGGA+AGG | - | chr5_2:15963331-15963350 | Msa0759970:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 15962914 | 15965535 | 15962914 | ID=Msa0759970;Name=Msa0759970 |
| chr5_2 | mRNA | 15962914 | 15965535 | 15962914 | ID=Msa0759970-mRNA-1;Parent=Msa0759970;Name=Msa0759970-mRNA-1;_AED=0.01;_eAED=0.01;_QI=171|1|1|1|1|1|5|193|267 |
| chr5_2 | exon | 15962914 | 15963316 | 15962914 | ID=Msa0759970-mRNA-1:exon:7193;Parent=Msa0759970-mRNA-1 |
| chr5_2 | exon | 15963435 | 15963577 | 15963435 | ID=Msa0759970-mRNA-1:exon:7192;Parent=Msa0759970-mRNA-1 |
| chr5_2 | exon | 15964135 | 15964216 | 15964135 | ID=Msa0759970-mRNA-1:exon:7191;Parent=Msa0759970-mRNA-1 |
| chr5_2 | exon | 15964561 | 15964638 | 15964561 | ID=Msa0759970-mRNA-1:exon:7190;Parent=Msa0759970-mRNA-1 |
| chr5_2 | exon | 15965074 | 15965535 | 15965074 | ID=Msa0759970-mRNA-1:exon:7189;Parent=Msa0759970-mRNA-1 |
| chr5_2 | five_prime_UTR | 15965365 | 15965535 | 15965365 | ID=Msa0759970-mRNA-1:five_prime_utr;Parent=Msa0759970-mRNA-1 |
| chr5_2 | CDS | 15965074 | 15965364 | 15965074 | ID=Msa0759970-mRNA-1:cds;Parent=Msa0759970-mRNA-1 |
| chr5_2 | CDS | 15964561 | 15964638 | 15964561 | ID=Msa0759970-mRNA-1:cds;Parent=Msa0759970-mRNA-1 |
| chr5_2 | CDS | 15964135 | 15964216 | 15964135 | ID=Msa0759970-mRNA-1:cds;Parent=Msa0759970-mRNA-1 |
| chr5_2 | CDS | 15963435 | 15963577 | 15963435 | ID=Msa0759970-mRNA-1:cds;Parent=Msa0759970-mRNA-1 |
| chr5_2 | CDS | 15963107 | 15963316 | 15963107 | ID=Msa0759970-mRNA-1:cds;Parent=Msa0759970-mRNA-1 |
| chr5_2 | three_prime_UTR | 15962914 | 15963106 | 15962914 | ID=Msa0759970-mRNA-1:three_prime_utr;Parent=Msa0759970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
